LMS-2760 correct dist folder added

SVN: 24284

openbis_standard_technologies/dist/server/etc/log.xml

+<?xml version="1.0" encoding="UTF-8" ?>
+<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd">
+
+<log4j:configuration xmlns:log4j='http://jakarta.apache.org/log4j/'>
+
+    <appender name="DEFAULT" class="org.apache.log4j.DailyRollingFileAppender">
+
+        <param name="File" value="logs/openbis_log.txt" />
+        <param name="DatePattern" value="'.'yyyy-MM-dd" />
+
+        <layout class="org.apache.log4j.PatternLayout">
+            <!--
+                // %d: outputs the date of the logging event.
+                // %-5p: priority (i.e. level) of the logging event should be left justified to
+                //       a width of five characters.
+                // %t: outputs the name of the thread that generated the logging event.
+                // %c: outputs the category of the logging event.
+                // %m: outputs the application supplied message associated with the logging event.
+                // %X: outputs the MDC (mapped diagnostic context) associated with the thread that generated the logging event.
+            -->
+            <param name="ConversionPattern" value="%d %-5p [%t]%X{sessionInfo} %c - %m%n" />
+        </layout>
+
+    </appender>
+    <appender name="AUTH" class="org.apache.log4j.DailyRollingFileAppender">
+
+        <param name="File" value="logs/openbis_auth_log.txt" />
+        <param name="DatePattern" value="'.'yyyy-MM-dd" />
+
+        <layout class="org.apache.log4j.PatternLayout">
+            <param name="ConversionPattern" value="%d %-5p [%t]%X{sessionInfo} %c - %m%n" />
+        </layout>
+    </appender>
+
+    <appender name="USAGE" class="org.apache.log4j.DailyRollingFileAppender">
+
+        <param name="File" value="logs/openbis_usage_log.txt" />
+        <param name="DatePattern" value="'.'yyyy-MM-dd" />
+
+        <layout class="org.apache.log4j.PatternLayout">
+            <param name="ConversionPattern" value="%d %-5p [%t]%X{sessionInfo} %c - %m%n" />
+        </layout>
+    </appender>
+
+    <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender">
+        <layout class="org.apache.log4j.PatternLayout">
+            <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n" />
+        </layout>
+    </appender>
+
+    <!--
+        // Defined but not used right now.
+    -->
+    <appender name="NULL" class="org.apache.log4j.varia.NullAppender" />
+
+    <appender name="EMAIL" class="org.apache.log4j.net.SMTPAppender">
+
+        <param name="BufferSize" value="512" />
+        <param name="SMTPHost" value="localhost" />
+        <param name="From" value="openbis@localhost" />
+        <param name="To" value="openbis@localhost" />
+        <param name="Subject" value="ATTENTION: openBIS Server" />
+        <param name="EvaluatorClass"
+            value="ch.systemsx.cisd.common.logging.AlwaysTrueTriggeringEventEvaluator" />
+
+        <layout class="org.apache.log4j.PatternLayout">
+            <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n" />
+        </layout>
+
+    </appender>
+
+    <!--
+        // If we have the category 'NOTIFY' and we send a logging event with priority 'info', then an email will be sent.
+    -->
+    <category name="NOTIFY">
+        <priority value="info" />
+        <appender-ref ref="DEFAULT" />
+        <appender-ref ref="EMAIL" />
+    </category>
+    
+    <!--
+        // If we have the category 'AUTH' and we send a logging event with priority 'info', then log to AUTH and USAGE.
+    -->
+    <category name="AUTH">
+        <priority value="info" />
+        <appender-ref ref="AUTH" />
+        <appender-ref ref="USAGE" />
+    </category>
+
+    <!--
+        // If we have the category 'TRACKING' and we send a logging event with priority 'info', then log to USAGE.
+    -->
+    <category name="TRACKING">
+        <priority value="info" />
+        <appender-ref ref="USAGE" />
+    </category>
+
+    <!--
+        // If we have the category 'ACCESS' and we send a logging event with priority 'info', then log to USAGE.
+    -->
+    <category name="ACCESS">
+        <priority value="info" />
+        <appender-ref ref="USAGE" />
+    </category>
+    
+    <!-- 
+        // Do not use log level debug otherwise plain passwords are readable.
+    -->
+    <logger name="httpclient.wire">
+        <level value="ERROR" />
+    </logger>
+
+    <root>
+        <priority value="info" />
+        <appender-ref ref="DEFAULT" />
+    </root>
+
+</log4j:configuration>

openbis_standard_technologies/dist/server/etc/passwd

+a:a@admins.com:A:The Admin:J3fII6Pex7jnCBwF+uXz2mFuB1QVhPUi
+u:u@users.com:U:The User:dmbGKaGRmbX8YKfslMxUHObmYfjywkuT
+o:o@observers.com:O:The Observer:t53ADCnFnEFhBvHB7FPoHhbHeW2O1KJc
+etlserver::::SHGHSPawL/B3NKXD5nsu4fSrj5LwR2MX

openbis_standard_technologies/dist/server/openbis.conf

+#
+# openBIS configuration file
+#
+
+#
+# Home directory of the JRE that should be used
+#
+#JAVA_HOME=${JAVA_HOME:=/usr/java/latest}
+
+#
+# General options to the JRE
+#
+JAVA_OPTS=${JAVA_OPTS:=-server -d64 -Djavax.net.ssl.trustStore=etc/openBIS.keystore}
+
+#
+# Memory options to the JRE
+#
+JAVA_MEM_OPTS="-Xmx2048m -Xms512m -XX:MaxPermSize=256m"

openbis_standard_technologies/dist/server/service.properties

+# Supported: 'file-authentication-service' and 'crowd-authentication-service'
+authentication-service = file-authentication-service
+
+# The time after which an inactive session is expired by the service (in minutes).
+session-timeout = 720
+
+# Authorization
+# Supported: 'no-authorization' and 'active-authorization'
+authorization-component-factory = active-authorization
+
+script-folder = .
+
+# Supported: currently only 'postgresql' is supported
+database.engine = postgresql
+database.create-from-scratch = false
+# For debugging set this value to true.
+database.script-single-step-mode = false
+database.url-host-part =
+database.kind = standard
+database.owner =
+database.owner-password =
+database.admin-user = 
+database.admin-password =
+
+proteomics.database.engine = postgresql
+proteomics.database.create-from-scratch = false
+proteomics.database.script-single-step-mode = false
+proteomics.database.url-host-part =
+proteomics.database.basic-name = proteomics
+proteomics.database.kind = productive
+proteomics.database.owner =
+proteomics.database.owner-password =
+proteomics.database.admin-user = 
+proteomics.database.admin-password =
+proteomics.script-folder = proteomics
+
+data-source-provider = dss-based-data-source-provider
+
+dss-based-data-source-provider.data-store-servers = dss-screening
+dss-based-data-source-provider.dss-screening.database-driver = org.postgresql.Driver
+dss-based-data-source-provider.dss-screening.database-url = jdbc:postgresql://localhost/imaging_productive
+
+crowd.service.host = crowd.systemsx.ch
+crowd.service.port = 8443
+crowd.application.name = openbis
+crowd.application.password =
+
+# The database instance local unique identifier. Used when the new database is created.
+database-instance = STANDARD
+
+# The URL of the CIFEX server
+cifex-url = https://cifex.ethz.ch:443
+
+# Hibernate Search
+# The working directory.
+hibernate.search.index-base = ./indices
+# One of NO_INDEX, SKIP_IF_MARKER_FOUND, INDEX_FROM_SCRATCH.
+# If not specified, default (SKIP_IF_MARKER_FOUND) is taken.
+hibernate.search.index-mode = SKIP_IF_MARKER_FOUND
+# Defines the maximum number of elements indexed before flushing the transaction-bound queue.
+# Default is 1000.
+hibernate.search.batch-size = 1000
+# Maximum number of search results
+hibernate.search.maxResults = 100000
+# If 'async', the update of indices will be done in a separate thread.
+hibernate.search.worker.execution=async
+
+# Name of the file that stores Web Client configuration
+web-client-configuration-file = etc/web-client.properties
+
+# ---------------------------------------------------------------------------
+# anonymous login configuration
+# ---------------------------------------------------------------------------
+# Login of the existing user whose settings will be used for anonymous login 
+#user-for-anonymous-login = <user-login>
+
+core-plugins-folder=./webapps/openbis/core-plugins
+
+# When set to "true" enables the system to store material codes containing non-alphanumeric characters.
+# Regardless of the value of this property no white spaces are allowed in the material codes.
+#material-relax-code-constraints=false
+
+# A comma-separated list of trusted cross-origin domains, that are allowed to
+# query openBIS content. Typically these are lightweight webapps that integrate with openBIS 
+# via JSON-RPC services, but are not directly hosted within the openBIS application.
+# 
+# Example 1 (two different domains configured):
+# 
+# trusted-cross-origin-domains=https://myapp.domain.com:8443, http://other.domain.com
+#
+# Example 2 (match every domain):
+#
+# trusted-cross-origin-domains= *
+#
+# The '*' matches any arbitrary domain. It should be used with care as it opens openBIS 
+# for potential cross-site scripting attacks.
+#
+#trusted-cross-origin-domains=

openbis_standard_technologies/dist/server/web-client.properties

+# Enable moving entities to trash (non-permanent deletion).
+# Default value: true
+enable-trash = true
+
+# Default view mode that should be used if user doesn't have it specified in URL. 
+# Options: 
+#  'NORMAL' (standard mode - default), 
+#  'SIMPLE' (readonly mode with simplified GUI), 
+#  'EMBEDDED' (similar to 'SIMPLE', suitable to be embedded on external pages) 
+#
+#default-view-mode = SIMPLE
+
+# Maximal number of visible columns in tables. Default: 50.
+#max-visible-columns = 20
+
+# (optional) List of data set types for which there should be an image overview shown in dataset tables.
+# If not specified image overview will not be shown for any datasets 
+# even if some overview plugins have been configured. 
+#
+data-set-types-with-image-overview = MICROSCOPY_IMAGE, .*IMG.*
+
+# Configuration of entity (experiment, sample, data set, material) detail views.
+# Allows to hide chosen sections.
+#
+# Mandatory properties: 
+#   - view (entity detail view id) 
+#   - types (list of entity type codes)
+# Optional properties: 
+#   - hide-sections (list of section ids)
+#   - hide-smart-view (removes "Smart View" from Data Set Detail View -> Data View) (generic_dataset_viewer)
+#   - hide-file-view (removes "File View" from Data Set Detail View -> Data View) (generic_dataset_viewer)
+# Available sections in entity-detail-views:
+#   generic_dataset_viewer
+#   	data-set-data-section
+#   	data-set-parents-section
+#   	data-set-children-section
+#   	query-section
+#   generic_experiment_viewer
+#   	data-sets-section
+#   	attachment-section
+#   	query-section
+#   	container-sample-section
+#   generic_sample_viewer
+#   	container-sample-section
+#   	derived-samples-section
+#   	parent-samples-section
+#   	data-sets-section
+#   	attachment-section
+#   	query-section
+#   generic_material_viewer
+#   	query-section
+#
+# Example:
+# 
+detail-views = plate-or-well-view, image-data-view, image-analysis-data-view, microscopy-dataset-view
+
+#experiment-view.view = generic_experiment_viewer
+#experiment-view.types = SIRNA_HCS
+#experiment-view.hide-sections = data-sets-section, attachment-section
+
+plate-or-well-view.view = generic_sample_viewer
+plate-or-well-view.types = PLATE.*, .*WELL.*
+plate-or-well-view.hide-sections = container-sample-section, derived-samples-section, parent-samples-section
+
+image-data-view.view = generic_dataset_viewer
+image-data-view.types = HCS_IMAGE.*
+image-data-view.hide-sections = data-set-parents-section, data-set-children-section, plate-layout-dataset-section
+image-data-view.hide-smart-view = false
+image-data-view.hide-file-view = true
+
+image-analysis-data-view.view = generic_dataset_viewer
+image-analysis-data-view.types = HCS_ANALYSIS_WELL_FEATURES.*
+image-analysis-data-view.hide-sections = data-set-parents-section, data-set-children-section
+image-analysis-data-view.hide-smart-view = true
+image-analysis-data-view.hide-file-view = true
+
+microscopy-dataset-view.view = generic_dataset_viewer
+microscopy-dataset-view.types = MICROSCOPY_IMAGE, .*IMG.*
+microscopy-dataset-view.hide-sections = data-set-children-section, data-set-parents-section
+microscopy-dataset-view.hide-smart-view = false
+microscopy-dataset-view.hide-file-view = true
+
+technologies = proteomics, screening
+
+# Relative path of cache. Default value is 'cache'.
+proteomics.cache-folder = ../../../web-client-data-cache
+# Minimum free disk space needed for the cache. Default value is 1 GB.
+#proteomics.minimum-free-disk-space-in-MB = 1024
+# Maximum retention time. Data older than this time will be removed from cache. Default value is a week.
+#proteomics.maximum-retention-time-in-days = 7
+
+screening.image-viewer-enabled = true
+# Material properties of the configured type will be rendered as links 
+# to the material detail view. 
+#screening.material-details-property-type = GENE_SYMBOLS