SP-168 BIS-90 : bugfix: permanent deletion problem

SVN: 25990

openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseVersionHolder.java

@@ -24,7 +24,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess.db;
 public final class DatabaseVersionHolder
 {
     /** Current version of the database. */
-    private static final String DATABASE_VERSION = "113"; // S135
+    private static final String DATABASE_VERSION = "114"; // S135
 
     private DatabaseVersionHolder()
     {

openbis/source/sql/generic/114/data-114.sql

+----------------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table DATABASE_INSTANCES
+----------------------------------------------------------------------------
+
+INSERT INTO database_instances(
+              id
+            , code
+	    	, uuid
+            , is_original_source)
+    VALUES (  nextval('DATABASE_INSTANCE_ID_SEQ')
+            , 'SYSTEM_DEFAULT'
+	    	, 'SYSTEM_DEFAULT'
+            , 'T');
+
+----------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table PERSONS
+-----------------------------------------------------------------------
+
+insert into persons
+(id
+,first_name
+,last_name
+,user_id
+,email
+,dbin_id)
+values
+(nextval('PERSON_ID_SEQ')
+,''
+,'System User'
+,'system'
+,''
+,(select id from database_instances where code = 'SYSTEM_DEFAULT') );
+
+-----------------------------------------------------------------------------------
+--  Purpose:  Create Controlled Vocabulary STORAGE_FORMAT
+-----------------------------------------------------------------------------------
+insert into controlled_vocabularies 
+       ( id
+       , code
+       , is_internal_namespace      
+       , description
+       , pers_id_registerer
+       , is_managed_internally
+       , dbin_id)
+values  (nextval('CONTROLLED_VOCABULARY_ID_SEQ')
+       , 'STORAGE_FORMAT'
+       , true
+       , 'The on-disk storage format of a data set'
+       , (select id from persons where user_id ='system')
+       , true
+       , (select id from database_instances where code = 'SYSTEM_DEFAULT'));
+
+
+-----------------------------------------------------------------------------------
+--  Purpose:  Create Controlled Vocabulary Terms for STORAGE_FORMAT
+-----------------------------------------------------------------------------------
+insert into controlled_vocabulary_terms 
+       ( id
+       , code
+       , covo_id 
+       , pers_id_registerer
+       , ordinal )
+values  (nextval('CVTE_ID_SEQ')
+       , 'PROPRIETARY'
+       , (select id from controlled_vocabularies where code = 'STORAGE_FORMAT' and is_internal_namespace = true)
+       , (select id from persons where user_id ='system')
+       , 1);
+
+insert into controlled_vocabulary_terms 
+       ( id
+       , code
+       , covo_id 
+       , pers_id_registerer
+       , ordinal)
+values  (nextval('CVTE_ID_SEQ')
+       , 'BDS_DIRECTORY'
+       , (select id from controlled_vocabularies where code = 'STORAGE_FORMAT' and is_internal_namespace = true)
+       , (select id from persons where user_id ='system')
+       , 2);
+
+------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table DATA_TYPES
+------------------------------------------------------------------
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'VARCHAR'
+,'Short text'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'MULTILINE_VARCHAR'
+ ,'Long text'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'INTEGER'
+,'Integer number'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'REAL'
+,'Real number, i.e. an inexact, variable-precision numeric type'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'BOOLEAN'
+,'True or False'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'TIMESTAMP'
+,'Both date and time. Format: yyyy-mm-dd hh:mm:ss'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'CONTROLLEDVOCABULARY'
+ ,'Controlled Vocabulary'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'MATERIAL'
+ ,'Reference to a material'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'HYPERLINK'
+ ,'Address of a web page'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'XML'
+ ,'XML document'
+);
+
+----------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table PROPERTY_TYPES
+-----------------------------------------------------------------------
+
+insert into property_types
+(id
+,code
+,description
+,label
+,daty_id
+,pers_id_registerer
+,dbin_id)
+values 
+(nextval('PROPERTY_TYPE_ID_SEQ')
+,'DESCRIPTION'
+,'A Description'
+,'Description'
+,(select id from data_types where code ='VARCHAR')
+,(select id from persons where user_id ='system')
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+--------------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table DATA_SET_TYPES
+--------------------------------------------------------------------------
+
+insert into data_set_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('DATA_SET_TYPE_ID_SEQ')
+,'UNKNOWN'
+,'Unknown'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+-------------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table FILE_FORMAT_TYPES
+-------------------------------------------------------------------------
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'HDF5'
+,'Hierarchical Data Format File, version 5'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'PROPRIETARY'
+,'Proprietary Format File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'SRF'
+,'Sequence Read Format File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'TIFF'
+,'TIFF File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'TSV'
+,'Tab Separated Values File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'XML'
+,'XML File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+---------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table LOCATOR_TYPES
+---------------------------------------------------------------------
+
+insert into locator_types
+(id
+,code
+,description)
+values 
+(nextval('LOCATOR_TYPE_ID_SEQ')
+,'RELATIVE_LOCATION'
+,'Relative Location'
+);
+
+---------------------------------------------------------------------
+--  Purpose:  Insert an initial data into table RELATIONSHIP_TYPES
+---------------------------------------------------------------------
+
+insert into relationship_types
+(id, 
+code, 
+label, 
+parent_label, 
+child_label, 
+description, 
+pers_id_registerer, 
+is_managed_internally, 
+is_internal_namespace, 
+dbin_id) 
+values
+(
+nextval('RELATIONSHIP_TYPE_ID_SEQ'),
+'PARENT_CHILD',
+'Parent - Child', 
+'Parent', 
+'Child', 
+'Parent - Child relationship', 
+(select id from persons where user_id ='system'), 
+'T', 
+'T', 
+(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into relationship_types
+(id, 
+code, 
+label, 
+parent_label, 
+child_label, 
+description, 
+pers_id_registerer, 
+is_managed_internally, 
+is_internal_namespace, 
+dbin_id) 
+values
+(
+nextval('RELATIONSHIP_TYPE_ID_SEQ'),
+'PLATE_CONTROL_LAYOUT',
+'Plate - Control Layout', 
+'Plate', 
+'Control Layout', 
+'Plate - Control Layout relationship', 
+(select id from persons where user_id ='system'), 
+'T', 
+'T', 
+(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+

openbis/source/sql/postgresql/114/domains-114.sql

+-- Creating domains
+
+CREATE DOMAIN AUTHORIZATION_ROLE AS VARCHAR(40) CHECK (VALUE IN ('ADMIN', 'POWER_USER', 'USER', 'OBSERVER', 'ETL_SERVER'));
+CREATE DOMAIN BOOLEAN_CHAR AS BOOLEAN DEFAULT FALSE;
+CREATE DOMAIN BOOLEAN_CHAR_OR_UNKNOWN AS CHAR(1) DEFAULT 'U' CHECK (VALUE IN ('F', 'T', 'U'));
+CREATE DOMAIN CODE AS VARCHAR(60);
+CREATE DOMAIN COLUMN_LABEL AS VARCHAR(128);
+CREATE DOMAIN DATA_STORE_SERVICE_KIND AS VARCHAR(40) CHECK (VALUE IN ('PROCESSING', 'QUERIES'));
+CREATE DOMAIN DATA_STORE_SERVICE_REPORTING_PLUGIN_TYPE AS VARCHAR(40) CHECK (VALUE IN ('TABLE_MODEL', 'DSS_LINK', 'AGGREGATION_TABLE_MODEL'));
+CREATE DOMAIN EVENT_TYPE AS VARCHAR(40) CHECK (VALUE IN ('DELETION', 'MOVEMENT'));
+CREATE DOMAIN FILE AS BYTEA;
+CREATE DOMAIN FILE_NAME AS VARCHAR(100);
+CREATE DOMAIN TEXT_VALUE AS TEXT;
+CREATE DOMAIN OBJECT_NAME AS VARCHAR(50);
+CREATE DOMAIN REAL_VALUE AS REAL;
+CREATE DOMAIN TECH_ID AS BIGINT;
+CREATE DOMAIN TIME_STAMP AS TIMESTAMP WITH TIME ZONE;
+CREATE DOMAIN TIME_STAMP_DFL AS TIMESTAMP WITH TIME ZONE NOT NULL DEFAULT CURRENT_TIMESTAMP;
+CREATE DOMAIN USER_ID AS VARCHAR(50);
+CREATE DOMAIN TITLE_100 AS VARCHAR(100);
+CREATE DOMAIN GRID_EXPRESSION AS VARCHAR(2000);
+CREATE DOMAIN GRID_ID AS VARCHAR(200);
+CREATE DOMAIN ORDINAL_INT AS BIGINT CHECK (VALUE > 0);
+CREATE DOMAIN DESCRIPTION_2000 AS VARCHAR(2000);
+CREATE DOMAIN ARCHIVING_STATUS AS VARCHAR(100) CHECK (VALUE IN ('LOCKED', 'AVAILABLE', 'ARCHIVED', 'ARCHIVE_PENDING', 'UNARCHIVE_PENDING', 'BACKUP_PENDING'));
+CREATE DOMAIN QUERY_TYPE AS VARCHAR(40) CHECK (VALUE IN ('GENERIC', 'EXPERIMENT', 'SAMPLE', 'DATA_SET', 'MATERIAL'));
+CREATE DOMAIN ENTITY_KIND AS VARCHAR(40) CHECK (VALUE IN ('SAMPLE', 'EXPERIMENT', 'DATA_SET', 'MATERIAL'));
+CREATE DOMAIN SCRIPT_TYPE AS VARCHAR(40) CHECK (VALUE IN ('DYNAMIC_PROPERTY', 'MANAGED_PROPERTY'));
+CREATE DOMAIN IDENTIFIER AS VARCHAR(200);
+CREATE DOMAIN DATA_SET_KIND AS VARCHAR(40) CHECK (VALUE IN ('EXTERNAL', 'LINK', 'CONTAINER'));
\ No newline at end of file

openbis/source/sql/postgresql/114/grants-114.sql

+-- Granting SELECT privilege to group OPENBIS_READONLY
+
+GRANT SELECT ON SEQUENCE attachment_content_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE attachment_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE code_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE controlled_vocabulary_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE core_plugin_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE cvte_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_set_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_set_relationship_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_set_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_store_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE DATA_STORE_SERVICES_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE database_instance_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE dstpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE etpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE event_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE experiment_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE experiment_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE experiment_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE file_format_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE space_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE deletion_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE locator_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE material_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE material_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE material_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE mtpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE perm_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE person_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE project_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE property_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE role_assignment_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE sample_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE sample_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE sample_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE stpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE authorization_group_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE filter_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE query_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE POST_REGISTRATION_DATASET_QUEUE_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE ENTITY_OPERATIONS_LOG_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE EXPERIMENT_RELATIONSHIPS_HISTORY_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE SAMPLE_RELATIONSHIPS_HISTORY_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE DATA_SET_RELATIONSHIPS_HISTORY_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE PROJECT_RELATIONSHIPS_HISTORY_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE EXTERNAL_DATA_MANAGEMENT_SYSTEM_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE attachment_contents TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE attachments TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE controlled_vocabularies TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE controlled_vocabulary_terms TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE core_plugins TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_all TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON data TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON data_deleted TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_properties_history TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON data_set_relationships TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_relationships_all TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_stores TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE DATA_STORE_SERVICES TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE DATA_STORE_SERVICE_DATA_SET_TYPES TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE database_instances TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE database_version_logs TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE events TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_properties_history TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiments_all TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON experiments TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON experiments_deleted TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE external_data TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE file_format_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE spaces TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE deletions TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE locator_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_properties_history TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE materials TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE persons TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE projects TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE role_assignments TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_properties_history TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE samples_all TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON samples TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON samples_deleted TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON sample_relationships TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_relationships_all TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE authorization_groups TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE authorization_group_persons TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE filters TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE queries TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE scripts TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE POST_REGISTRATION_DATASET_QUEUE TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE ENTITY_OPERATIONS_LOG TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE EXPERIMENT_RELATIONSHIPS_HISTORY TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE SAMPLE_RELATIONSHIPS_HISTORY TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE DATA_SET_RELATIONSHIPS_HISTORY TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE PROJECT_RELATIONSHIPS_HISTORY TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON sample_history_view TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON data_set_history_view TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON experiment_history_view TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE EXTERNAL_DATA_MANAGEMENT_SYSTEMS TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE LINK_DATA TO GROUP OPENBIS_READONLY;

openbis/source/sql/postgresql/migration/migration-113-114.sql

+-- Migration from 113 to 114
+
+ALTER TABLE LINK_DATA DROP CONSTRAINT LNDA_DATA_FK;
+ALTER TABLE LINK_DATA ADD CONSTRAINT LNDA_DATA_FK FOREIGN KEY (DATA_ID) REFERENCES DATA_ALL(ID) ON DELETE CASCADE;

openbis/sourceTest/sql/postgresql/114/001=attachment_contents.tsv

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+4	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+5	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+6	\\x33564350310a33564350320a3356435033
+7	\\x616c610a6d610a6b6f74610a610a6b6f740a6a6573740a6964696f7461
+8	\\x33564350310a33564350320a3356435033

openbis/sourceTest/sql/postgresql/114/002=attachments.tsv

+1	2	exampleExperiments.txt	2008-12-10 13:48:17.996703+01	1	2	1	\N	\N	\N	\N
+2	2	exampleExperiments.txt	2008-12-10 13:49:14.564025+01	2	2	2	\N	\N	\N	\N
+3	2	exampleExperiments.txt	2008-12-10 13:49:20.23603+01	3	2	3	\N	\N	\N	\N
+4	2	exampleExperiments.txt	2008-12-10 13:49:27.90141+01	4	2	4	\N	\N	\N	\N
+5	8	exampleExperiments.txt	2008-12-10 13:49:48.879301+01	1	2	5	\N	\N	\N	\N
+6	8	cellPlates.txt	2008-12-10 13:51:10.050748+01	1	2	6	\N	\N	\N	\N
+7	\N	sampleHistory.txt	2009-06-09 17:00:00+02	1	2	7	987	\N	\N	\N
+8	22	cellPlates.txt	2008-12-10 13:51:10.050748+01	1	2	8	\N	\N	\N	\N

openbis/sourceTest/sql/postgresql/114/005=controlled_vocabularies.tsv

+1	PLATE_GEOMETRY	The geometry or dimensions of a plate	2008-11-05 09:18:00.622+01	1	t	t	1	2009-03-23 15:34:44.462776+01	t	\N
+2	STORAGE_FORMAT	The on-disk storage format of a data set	2008-11-05 09:18:00.622+01	1	t	t	1	2009-03-23 15:34:44.462776+01	t	\N
+3	ORGANISM	available-organism	2008-11-05 09:18:30.327+01	2	f	f	1	2009-03-23 15:34:44.462776+01	t	\N
+4	GENDER	\N	2008-11-05 09:18:30.421+01	2	f	f	1	2009-03-23 15:34:44.462776+01	t	\N
+5	HUMAN	Humans	2008-11-05 09:18:30.983+01	2	f	f	1	2009-03-23 15:34:44.462776+01	t	\N

openbis/sourceTest/sql/postgresql/114/006=controlled_vocabulary_terms.tsv

+1	96_WELLS_8X12	2008-11-05 09:18:00.622+01	1	1	\N	\N	1	t
+2	384_WELLS_16X24	2008-11-05 09:18:00.622+01	1	1	\N	\N	2	t
+3	1536_WELLS_32X48	2008-11-05 09:18:00.622+01	1	1	\N	\N	3	t
+4	PROPRIETARY	2008-11-05 09:18:00.622+01	2	1	\N	\N	1	t
+5	BDS_DIRECTORY	2008-11-05 09:18:00.622+01	2	1	\N	\N	2	t
+6	RAT	2008-11-05 09:18:30.327+01	3	2	\N	\N	1	t
+7	DOG	2008-11-05 09:18:30.327+01	3	2	\N	\N	2	t
+8	HUMAN	2008-11-05 09:18:30.327+01	3	2	\N	\N	3	t
+9	GORILLA	2008-11-05 09:18:30.327+01	3	2	\N	\N	4	t
+10	FLY	2008-11-05 09:18:30.327+01	3	2	\N	\N	5	t
+11	MALE	2008-11-05 09:18:30.421+01	4	2	\N	\N	1	t
+12	FEMALE	2008-11-05 09:18:30.421+01	4	2	\N	\N	2	t
+13	MAN	2008-11-05 09:18:30.983+01	5	2	\N	\N	1	t
+14	WOMAN	2008-11-05 09:18:30.983+01	5	2	\N	\N	2	t
+15	CHILD	2008-11-05 09:18:31.061+01	5	2	\N	\N	3	t

openbis/sourceTest/sql/postgresql/114/008=data_all.tsv

+2	20081105092158673-1	2	\N	2008-11-05 09:21:58.688+01	2008-11-05 09:21:58.798+01	f	t	2009-03-23 15:34:44.462776+01	2	1	f	982	\N	\N	\N	1	\N
+4	20081105092159188-3	2	\N	2008-11-05 09:21:59.203+01	2008-11-05 09:21:59.313+01	f	t	2009-03-23 15:34:44.462776+01	2	1	t	\N	\N	\N	\N	\N	\N
+5	20081105092159111-1	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:20:21.646654+01	f	t	2009-03-23 15:34:44.462776+01	18	1	f	1042	\N	\N	\N	\N	\N
+6	20081105092159222-2	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:21:11.479816+01	f	t	2009-03-23 15:34:44.462776+01	19	1	f	1043	\N	\N	\N	\N	\N
+7	20081105092159333-3	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:21:47.815468+01	f	t	2009-03-23 15:34:44.462776+01	20	1	f	1044	\N	\N	\N	\N	\N
+8	20081105092259000-8	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N	\N
+9	20081105092259000-9	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N	\N
+10	20081105092259900-0	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N	\N
+11	20081105092259900-1	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N	\N
+12	20081105092359990-2	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N	\N
+13	20110509092359990-10	4	\N	2011-05-09 10:22:59.203+02	2011-05-09 10:22:59.313+02	f	t	2011-05-09 16:34:44.462776+02	8	1	t	\N	\N	\N	\N	\N	\N
+14	20110509092359990-11	2	\N	2011-05-09 10:22:59.203+02	2011-05-09 10:22:59.313+02	f	t	2011-05-09 16:34:44.462776+02	8	1	t	\N	\N	1	13	\N	\N
+15	20110509092359990-12	2	\N	2011-05-09 10:22:59.203+02	2011-05-09 10:22:59.313+02	f	t	2011-05-09 16:34:44.462776+02	8	1	t	\N	\N	2	13	\N	\N
+17	20110805092359990-17	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:21:47.815468+01	f	t	2009-03-23 15:34:44.462776+01	20	1	f	1044	\N	\N	\N	\N	\N
+18	20081105092259000-18	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N	\N
+19	20081105092259000-19	4	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	2	\N	\N	\N	\N
+20	20081105092259000-20	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	2	\N	\N	\N	\N
+21	20081105092259000-21	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	2	\N	\N	\N	\N
+22	20120619092259000-22	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	23	1	t	\N	2	\N	\N	\N	\N
+23	20120628092259000-23	5	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	23	1	t	\N	2	\N	\N	\N	\N
+24	20120628092259000-24	5	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	23	1	t	\N	2	\N	\N	\N	\N
+25	20120628092259000-25	5	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	23	1	t	\N	2	\N	\N	\N	\N

openbis/sourceTest/sql/postgresql/114/009=data_set_properties.tsv

+1	2	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.085+02	1
+2	4	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.089+02	1
+3	5	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.09+02	1
+4	6	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.09+02	1
+5	7	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+6	8	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+7	9	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+8	10	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+9	11	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+10	12	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+11	14	1	non-virtual comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+12	15	1	non-virtual comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+13	5	4	\N	12	\N	2	2009-09-15 08:45:48.059548+02	2009-09-15 08:45:48.639+02	1
+14	5	3	\N	\N	22	2	2009-09-15 08:45:48.059548+02	2009-09-15 08:45:48.64+02	1
+15	5	2	\N	\N	2498	2	2009-09-15 08:45:48.059548+02	2009-09-15 08:45:48.64+02	1
+19	17	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1
+20	18	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02	1

openbis/sourceTest/sql/postgresql/114/011=data_set_relationships_all.tsv

+7	8	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+5	9	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+6	9	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+7	9	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+9	10	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+9	11	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+10	12	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+11	12	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+17	18	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+2	4	1	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+2	9	1	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+19	20	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02
+19	21	\N	\N	2012-05-31 15:01:16.531617+02	2012-05-31 15:01:16.531617+02

openbis/sourceTest/sql/postgresql/114/013=data_set_type_property_types.tsv

+1	2	14	t	f	2	2009-04-24 14:45:06.348563+02	\N	1	\N	t
+2	2	26	f	f	2	2009-09-15 08:44:10.351183+02	\N	2	\N	t
+3	2	25	f	f	2	2009-09-15 08:44:16.365221+02	\N	3	\N	t
+4	2	13	f	f	2	2009-09-15 08:44:36.342115+02	\N	4	\N	t

openbis/sourceTest/sql/postgresql/114/014=data_set_types.tsv

+1	UNKNOWN	Unknown	1	2009-03-23 15:34:44.462776+01	\N	\N	f	EXTERNAL
+2	HCS_IMAGE	High Content Screening Image	1	2009-03-23 15:34:44.462776+01	\N	\N	f	EXTERNAL
+3	HCS_IMAGE_ANALYSIS_DATA	Data derived from analysis of HCS images	1	2009-03-23 15:34:44.462776+01	\N	\N	f	EXTERNAL
+4	CONTAINER_TYPE	A container (virtual) data set type	1	2011-05-09 12:24:44.462776+02	\N	\N	f	CONTAINER
+5	LINK_TYPE	A link data set type	1	2012-06-26 12:24:44.462776+02	\N	\N	f	LINK

openbis/sourceTest/sql/postgresql/114/017=data_stores.tsv

+1	1	STANDARD		2008-11-05 09:18:00.622+01			2009-04-09 09:36:34.982+02	f

openbis/sourceTest/sql/postgresql/114/018=data_types.tsv

+1	VARCHAR	Variable length character
+2	INTEGER	Integer
+3	REAL	Real number, i.e. an inexact, variable-precision numeric type
+4	BOOLEAN	An enumerated type with values True and False
+5	TIMESTAMP	Both date and time. Format: yyyy-mm-dd hh:mm:ss
+6	CONTROLLEDVOCABULARY	Controlled Vocabulary
+7	MATERIAL	Reference to a material
+8	HYPERLINK	Address of a web page
+9	MULTILINE_VARCHAR	Long text
+10	XML	XML document

openbis/sourceTest/sql/postgresql/114/019=database_instances.tsv

+1	CISD	57F0FA8F-80AC-42AB-9C6A-AAADBCC37A3E	t	2008-11-05 09:18:00.622+01