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Commit 76b989e9 authored by tpylak's avatar tpylak
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LMS-2069 iBrain2 dropboxes: dss config

SVN: 20348
parent 09cd223d
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inputs = hcs_image_raw, hcs_image_overview, hcs_image_segmentation, hcs_analysis_well_features, hcs_analysis_well_quality, hcs_analysis_well_features, hcs_analysis_cell_features_csv, hcs_analysis_cell_features_mat inputs = hcs_image_raw, hcs_image_overview, hcs_image_segmentation, hcs_analysis_well_features, hcs_analysis_well_quality, hcs_analysis_cell_features_csv, hcs_analysis_cell_features_mat
root = ~/data/dropboxes root = ~/data/dropboxes
ibrain2-dropboxes-dir = ${root}/ibrain2-dropboxes-test ibrain2-dropboxes-dir = ${root}/incoming
staging-dir = ${root}/tmp staging-dir = ${root}/tmp
scripts-dir = ${root}/scripts scripts-dir = ${root}/scripts
# --- hcs_image_raw ------------ # --- hcs_image_raw ------------
hcs_image_raw.incoming-dir = ${ibrain2-dropboxes-dir}/hcs_image_raw hcs_image_raw.incoming-dir = ${ibrain2-dropboxes-dir}/hcs_image_raw
...@@ -14,18 +13,50 @@ hcs_image_raw.script-path = ${scripts-dir}/hcs_image_raw.py ...@@ -14,18 +13,50 @@ hcs_image_raw.script-path = ${scripts-dir}/hcs_image_raw.py
hcs_image_raw.incoming-data-completeness-condition = auto-detection hcs_image_raw.incoming-data-completeness-condition = auto-detection
hcs_image_raw.top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.JythonPlateDataSetHandler hcs_image_raw.top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.JythonPlateDataSetHandler
hcs_image_raw.staging-dir = ${staging-dir} hcs_image_raw.staging-dir = ${staging-dir}
hcs_image_raw.storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor hcs_image_raw.storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor
hcs_image_raw.storage-processor.data-source = imaging-db hcs_image_raw.storage-processor.data-source = imaging-db
# --- hcs_image_overview # --- hcs_image_overview
hcs_image_overview.incoming-dir = ${ibrain2-dropboxes-dir}/hcs_image_overview
hcs_image_overview.script-path = ${scripts-dir}/hcs_image_overview.py
hcs_image_overview.incoming-data-completeness-condition = auto-detection
hcs_image_overview.top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.JythonPlateDataSetHandler
hcs_image_overview.staging-dir = ${staging-dir}
hcs_image_overview.storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor
hcs_image_overview.storage-processor.data-source = imaging-db
# --- hcs_image_segmentation # --- hcs_image_segmentation
hcs_image_segmentation.incoming-dir = ${ibrain2-dropboxes-dir}/hcs_image_segmentation
hcs_image_segmentation.script-path = ${scripts-dir}/hcs_image_segmentation.py
hcs_image_segmentation.incoming-data-completeness-condition = auto-detection
hcs_image_segmentation.top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.JythonPlateDataSetHandler
hcs_image_segmentation.staging-dir = ${staging-dir}
hcs_image_segmentation.storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor
hcs_image_segmentation.storage-processor.data-source = imaging-db
# --- hcs_analysis_cell_features_csv # --- hcs_analysis_cell_features_csv
hcs_analysis_cell_features_csv.incoming-dir = ${ibrain2-dropboxes-dir}/hcs_analysis_cell_features_csv
hcs_analysis_cell_features_csv.script-path = ${scripts-dir}/hcs_analysis_cell_features_csv.py
hcs_analysis_cell_features_csv.incoming-data-completeness-condition = auto-detection
hcs_analysis_cell_features_csv.top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.JythonTopLevelDataSetHandler
hcs_analysis_cell_features_csv.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
hcs_analysis_cell_features_csv.staging-dir = ${staging-dir}
# --- hcs_analysis_cell_features_mat # --- hcs_analysis_cell_features_mat
hcs_analysis_cell_features_mat.incoming-dir = ${ibrain2-dropboxes-dir}/hcs_analysis_cell_features_mat
hcs_analysis_cell_features_mat.script-path = ${scripts-dir}/hcs_analysis_cell_features_mat.py
hcs_analysis_cell_features_mat.incoming-data-completeness-condition = auto-detection
hcs_analysis_cell_features_mat.top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.JythonTopLevelDataSetHandler
hcs_analysis_cell_features_mat.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
hcs_analysis_cell_features_mat.staging-dir = ${staging-dir}
# --- hcs_analysis_well_quality ----------- # --- hcs_analysis_well_quality -----------
......
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