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Commit 73bcd32e authored by juanf's avatar juanf
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SSDM-3733 : TXT implementation, properties labels 

SVN: 36691
parent ed7f1d32
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openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/exports-api.py
+ 39
− 5
View file @ 73bcd32e
...@@ -39,6 +39,8 @@ from ch.systemsx.cisd.common.mail import EMailAddress; ...@@ -39,6 +39,8 @@ from ch.systemsx.cisd.common.mail import EMailAddress;
#To obtain the openBIS URL #To obtain the openBIS URL
from ch.systemsx.cisd.openbis.dss.generic.server import DataStoreServer; from ch.systemsx.cisd.openbis.dss.generic.server import DataStoreServer;
from ch.systemsx.cisd.openbis.dss.generic.server import SessionTokenManager
from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
OPENBISURL = DataStoreServer.getConfigParameters().getServerURL() + "/openbis/openbis"; OPENBISURL = DataStoreServer.getConfigParameters().getServerURL() + "/openbis/openbis";
V3_DSS_BEAN = "data-store-server_INTERNAL"; V3_DSS_BEAN = "data-store-server_INTERNAL";
...@@ -50,11 +52,21 @@ from ch.ethz.sis.openbis.generic.asapi.v3.dto.project.search import ProjectSearc ...@@ -50,11 +52,21 @@ from ch.ethz.sis.openbis.generic.asapi.v3.dto.project.search import ProjectSearc
from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search import ExperimentSearchCriteria; from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search import ExperimentSearchCriteria;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search import SampleSearchCriteria; from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search import SampleSearchCriteria;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search import DataSetSearchCriteria; from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search import DataSetSearchCriteria;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.project.fetchoptions import ProjectFetchOptions; from ch.ethz.sis.openbis.generic.asapi.v3.dto.project.fetchoptions import ProjectFetchOptions;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions import ExperimentFetchOptions; from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions import ExperimentFetchOptions;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions import SampleFetchOptions; from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions import SampleFetchOptions;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions import DataSetFetchOptions; from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions import DataSetFetchOptions;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search import ExperimentTypeSearchCriteria;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions import ExperimentTypeFetchOptions;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search import SampleTypeSearchCriteria;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions import SampleTypeFetchOptions;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search import DataSetTypeSearchCriteria;
from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions import DataSetTypeFetchOptions;
#V3 API - Files #V3 API - Files
from ch.ethz.sis.openbis.generic.dssapi.v3 import IDataStoreServerApi; from ch.ethz.sis.openbis.generic.dssapi.v3 import IDataStoreServerApi;
from ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search import DataSetFileSearchCriteria; from ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search import DataSetFileSearchCriteria;
...@@ -323,7 +335,7 @@ def export(sessionToken, entities, includeRoot, userEmail, mailClient): ...@@ -323,7 +335,7 @@ def export(sessionToken, entities, includeRoot, userEmail, mailClient):
entityJson = String(objectMapper.writeValueAsString(entityObj)); entityJson = String(objectMapper.writeValueAsString(entityObj));
addFile(tempDirPath, entityFilePath, "json", entityJson.getBytes(), zos); addFile(tempDirPath, entityFilePath, "json", entityJson.getBytes(), zos);
#TEXT #TEXT
entityTXT = String(getTXT(entityObj)); entityTXT = String(getTXT(entityObj, v3, sessionToken));
addFile(tempDirPath, entityFilePath, "txt", entityTXT.getBytes(), zos); addFile(tempDirPath, entityFilePath, "txt", entityTXT.getBytes(), zos);
...@@ -342,20 +354,38 @@ def export(sessionToken, entities, includeRoot, userEmail, mailClient): ...@@ -342,20 +354,38 @@ def export(sessionToken, entities, includeRoot, userEmail, mailClient):
FileUtils.forceDelete(File(tempZipFilePath)); FileUtils.forceDelete(File(tempZipFilePath));
return True return True
def getTXT(entityObj): def getTXT(entityObj, v3, sessionToken):
txtBuilder = StringBuilder(); txtBuilder = StringBuilder();
txtBuilder.append(entityObj.getCode()).append("\n"); txtBuilder.append(entityObj.getCode()).append("\n");
txtBuilder.append("# Identification Info:").append("\n"); txtBuilder.append("# Identification Info:").append("\n");
typeObj = None
if isinstance(entityObj, Project): if isinstance(entityObj, Project):
txtBuilder.append("Kind: Project").append("\n"); txtBuilder.append("Kind: Project").append("\n");
if isinstance(entityObj, Experiment): if isinstance(entityObj, Experiment):
txtBuilder.append("Kind: Experiment").append("\n"); txtBuilder.append("Kind: Experiment").append("\n");
searchCriteria = ExperimentTypeSearchCriteria();
searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
fetchOptions = ExperimentTypeFetchOptions();
fetchOptions.withPropertyAssignments();
results = v3.searchExperimentTypes(sessionToken, searchCriteria, fetchOptions);
typeObj = results.getObjects().get(0);
if isinstance(entityObj, Sample): if isinstance(entityObj, Sample):
txtBuilder.append("Kind: Sample").append("\n"); txtBuilder.append("Kind: Sample").append("\n");
searchCriteria = SampleTypeSearchCriteria();
searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
fetchOptions = SampleTypeFetchOptions();
fetchOptions.withPropertyAssignments();
results = v3.searchSampleTypes(sessionToken, searchCriteria, fetchOptions);
typeObj = results.getObjects().get(0);
if isinstance(entityObj, DataSet): if isinstance(entityObj, DataSet):
txtBuilder.append("Kind: DataSet").append("\n"); txtBuilder.append("Kind: DataSet").append("\n");
searchCriteria = DataSetTypeSearchCriteria();
searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
fetchOptions = DataSetTypeFetchOptions();
fetchOptions.withPropertyAssignments();
results = v3.searchDataSetTypes(sessionToken, searchCriteria, fetchOptions);
typeObj = results.getObjects().get(0);
if not isinstance(entityObj, Project): if not isinstance(entityObj, Project):
txtBuilder.append("Type: " + entityObj.getType().getCode()).append("\n"); txtBuilder.append("Type: " + entityObj.getType().getCode()).append("\n");
...@@ -383,10 +413,14 @@ def getTXT(entityObj): ...@@ -383,10 +413,14 @@ def getTXT(entityObj):
if not isinstance(entityObj, Project): if not isinstance(entityObj, Project):
txtBuilder.append("# Properties:").append("\n"); txtBuilder.append("# Properties:").append("\n");
propertyAssigments = typeObj.getPropertyAssignments();
properties = entityObj.getProperties(); properties = entityObj.getProperties();
for propertyCode in properties: for propertyAssigment in propertyAssigments:
txtBuilder.append(propertyCode).append(": ").append(properties[propertyCode]).append("\n"); propertyType = propertyAssigment.getPropertyType();
if propertyType.getCode() in properties:
txtBuilder.append(propertyType.getLabel()).append(": ").append(properties[propertyType.getCode()]).append("\n");
print txtBuilder.toString();
return txtBuilder.toString(); return txtBuilder.toString();
def addFile(tempDirPath, entityFilePath, extension, fileContent, zos): def addFile(tempDirPath, entityFilePath, extension, fileContent, zos):
......
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