CCS-9 SP-304 : Modified script that retrieves data from Chicago to write to a...

CCS-9 SP-304 : Modified script that retrieves data from Chicago to write to a tmp file and then mv the tmp file to the correct location.

SVN: 27114

eu_basynthec/source/core-plugins/basynthec/1/dss/reporting-plugins/chicago/data-from-server.csv

@@ -517,4 +517,3 @@ JJS-MGP201,False,True
 JJS-MGP163,False,True
 JJS-MGP108,False,True
 JJS-MGP043,False,True
-JJS-MGP999,False,True

eu_basynthec/source/core-plugins/basynthec/1/dss/reporting-plugins/chicago/load-data-from-server-and-save-in-file.py

@@ -3,6 +3,7 @@
 import urllib
 import json
 import csv
+import shutil
 
 FIELD_ID = 'id'
 FIELD_PREDICTIONS = 'predictions'
@@ -48,5 +49,6 @@ def writeDataToFile(filePath, dataList):
       file.close()
 
 data = loadDataFromServer('http://pubseed.theseed.org/model-prod/StrainServer.cgi?user=reviewer&pass=reviewer&method=getAllPhenotypesAndPredictions&encoding=json')
-writeDataToFile('data-from-server.csv', convertData(data))
+writeDataToFile('data-from-server.csv.tmp', convertData(data))
+shutil.move('data-from-server.csv.tmp', 'data-from-server.csv')