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Commit 70e56f32 authored by tpylak's avatar tpylak
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SE-352 add comments how to switch off using 'convert'

SVN: 22107
parent 2536303f
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...@@ -69,6 +69,8 @@ STORE_CHANNELS_ON_EXPERIMENT_LEVEL = False ...@@ -69,6 +69,8 @@ STORE_CHANNELS_ON_EXPERIMENT_LEVEL = False
""" should the original data be stored in the original form or should we pack them into one container? """ """ should the original data be stored in the original form or should we pack them into one container? """
ORIGINAL_DATA_STORAGE_FORMAT = OriginalDataStorageFormat.UNCHANGED ORIGINAL_DATA_STORAGE_FORMAT = OriginalDataStorageFormat.UNCHANGED
""" Change to 'False' if 'convert' tool is not installed """
USE_IMAGE_MAGIC_CONVERT_TOOL = True
def rollback_service(service, ex): def rollback_service(service, ex):
global plateCode global plateCode
...@@ -286,10 +288,9 @@ if incoming.isDirectory(): ...@@ -286,10 +288,9 @@ if incoming.isDirectory():
imageDatasetConfig = MyImageDataSetConfig(incoming, incoming) imageDatasetConfig = MyImageDataSetConfig(incoming, incoming)
imageDatasetConfig.setRawImageDatasetType() imageDatasetConfig.setRawImageDatasetType()
imageDatasetConfig.setFileFormatType(IMAGE_DATASET_FILE_FORMAT) imageDatasetConfig.setFileFormatType(IMAGE_DATASET_FILE_FORMAT)
# Change to 'False' if 'convert' tool is not installed imageDatasetConfig.setUseImageMagicToGenerateThumbnails(USE_IMAGE_MAGIC_CONVERT_TOOL)
imageDatasetConfig.setUseImageMagicToGenerateThumbnails(True) # Available in the next release:
# used only if Image Magic is used to generate thumbnails #imageDatasetConfig.setThumbnailsGenerationImageMagicParams(["-contrast-stretch", "0"])
imageDatasetConfig.setThumbnailsGenerationImageMagicParams(["-contrast-stretch", "0"])
imageDatasetDetails = factory.createImageRegistrationDetails(imageDatasetConfig, incoming) imageDatasetDetails = factory.createImageRegistrationDetails(imageDatasetConfig, incoming)
imageDataSet = transaction.createNewDataSet(imageDatasetDetails) imageDataSet = transaction.createNewDataSet(imageDatasetDetails)
imageDataSet.setPropertyValue(IMAGE_DATASET_BATCH_PROPCODE, batchName) imageDataSet.setPropertyValue(IMAGE_DATASET_BATCH_PROPCODE, batchName)
...@@ -302,10 +303,9 @@ if incoming.isDirectory(): ...@@ -302,10 +303,9 @@ if incoming.isDirectory():
overlayDatasetConfig = MyImageDataSetConfig(overlaysDir, overlaysDir) overlayDatasetConfig = MyImageDataSetConfig(overlaysDir, overlaysDir)
overlayDatasetConfig.setSegmentationImageDatasetType() overlayDatasetConfig.setSegmentationImageDatasetType()
overlayDatasetConfig.setFileFormatType(OVERLAY_IMAGE_FILE_FORMAT) overlayDatasetConfig.setFileFormatType(OVERLAY_IMAGE_FILE_FORMAT)
# Change to 'False' if 'convert' tool is not installed overlayDatasetConfig.setUseImageMagicToGenerateThumbnails(USE_IMAGE_MAGIC_CONVERT_TOOL)
overlayDatasetConfig.setUseImageMagicToGenerateThumbnails(True) # Available in the next release:
# used only if Image Magic is used to generate thumbnails #overlayDatasetConfig.setThumbnailsGenerationImageMagicParams(["-contrast-stretch", "0"])
overlayDatasetConfig.setThumbnailsGenerationImageMagicParams(["-contrast-stretch", "0"])
overlayDatasetDetails = factory.createImageRegistrationDetails(overlayDatasetConfig, overlaysDir) overlayDatasetDetails = factory.createImageRegistrationDetails(overlayDatasetConfig, overlaysDir)
overlayDataset = transaction.createNewDataSet(overlayDatasetDetails) overlayDataset = transaction.createNewDataSet(overlayDatasetDetails)
......
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