LMS-2612 add disabled-core-plugins property, remove jython drop box because it...

LMS-2612 add disabled-core-plugins property, remove jython drop box because it hase been moved to core-plugins

SVN: 24583

openbis_standard_technologies/dist/etc/service.properties

@@ -67,6 +67,8 @@ mail.smtp.host = file://${root-dir}
 # mail.smtp.user = 
 # mail.smtp.password = 
 
+disabled-core-plugins =  $DISABLED_TECHNOLOGIES
+
 # ---------------------------------------------------------------------------
 # (optional) archiver configuration
 # ---------------------------------------------------------------------------

openbis_standard_technologies/dist/tarball/installer/data/dropboxes/hcs-dropbox.py

-import os
-from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig
-from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import ImageMetadata
-from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry
-
-SPACE_CODE = "TEST"
-PROJECT_CODE = "TEST-PROJECT"
-PROJECT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s" % vars()
-EXPERIMENT_CODE = "DEMO-EXP-HCS"
-EXPERIMENT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s/%(EXPERIMENT_CODE)s" % vars()
-
-PLATE_CODE = "PLATE1"
-PLATE_ID = "/%(SPACE_CODE)s/%(PLATE_CODE)s" % vars()
-PLATE_GEOMETRY_PROPERTY_CODE = "$PLATE_GEOMETRY"
-PLATE_GEOMETRY = "384_WELLS_16X24"
-
-
-def create_space_if_needed(transaction):
-    space = transaction.getSpace(SPACE_CODE)
-    if None == space:
-        space = transaction.createNewSpace(SPACE_CODE, None)
-        space.setDescription("A demo space")
-
-def create_project_if_needed(transaction):
-    project = transaction.getProject(PROJECT_ID)
-    if None == project:
-        create_space_if_needed(transaction)
-        project = transaction.createNewProject(PROJECT_ID)
-        project.setDescription("A demo project")
-        
-def create_experiment_if_needed(transaction):
-    """ Get the specified experiment or register it if necessary """
-    exp = transaction.getExperiment(EXPERIMENT_ID)
-    if None == exp:
-        create_project_if_needed(transaction)
-        print 'Creating new experiment : ' + EXPERIMENT_ID
-        exp = transaction.createNewExperiment(EXPERIMENT_ID, 'SIRNA_HCS')
-        exp.setPropertyValue("DESCRIPTION", "A sample experiment")
-        
-    return exp
-    
-def create_plate_if_needed(transaction):
-    """ Get the specified sample or register it if necessary """
-
-    samp = transaction.getSample(PLATE_ID)
-
-    if None == samp:
-        exp = create_experiment_if_needed(transaction)
-        samp = transaction.createNewSample(PLATE_ID, 'PLATE')
-        samp.setPropertyValue(PLATE_GEOMETRY_PROPERTY_CODE, PLATE_GEOMETRY)
-        samp.setExperiment(exp)
-        
-    return samp
-
-     
-class MyImageDataSetConfig(SimpleImageDataConfig):
-    def extractImageMetadata(self, imagePath):
-     
-        basename = os.path.splitext(imagePath)[0]
-        (plate, well, tile, channelCode) = basename.split("_")
-         
-        image_tokens = ImageMetadata()
-        image_tokens.well = well
-        try:
-            image_tokens.tileNumber = int(tile)
-        except ValueError:
-            raise Exception("Cannot parse field number from '" + tile + "' in '" + basename + "' file name.")
-     
-        image_tokens.channelCode = channelCode
-        return image_tokens
-    
-    def getTileGeometry(self, imageTokens, maxTileNumber):
-        return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3)    
- 
-if incoming.isDirectory():
-    imageDataset = MyImageDataSetConfig()
-    imageDataset.setRawImageDatasetType()
-    imageDataset.setPlate(SPACE_CODE, PLATE_CODE)
-    registrationDetails = factory.createImageRegistrationDetails(imageDataset, incoming)  
-    transaction = service.transaction(incoming, factory)
-    plate = create_plate_if_needed(transaction)
-    dataset = transaction.createNewDataSet(registrationDetails);
-    dataset.setSample(plate)
-    transaction.moveFile(incoming.getPath(), dataset);