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sispub
openbis
Commits
66c445ec
Commit
66c445ec
authored
13 years ago
by
felmer
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LMS-2612 remove drop box configs from service.properties standard technologies distribution
SVN: 24586
parent
c4250ab5
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openbis_standard_technologies/dist/etc/service.properties
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openbis_standard_technologies/dist/etc/service.properties
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66c445ec
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@@ -183,96 +183,3 @@ data-set-clean-up-proteomics.interval = 300
data-set-clean-up-proteomics.data-source
=
data-source
data-set-clean-up-proteomics.data-set-table-name
=
data_sets
# ---------------------------------------------------------------------------
# DROPBOXES CONFIGURATION
# ---------------------------------------------------------------------------
incoming-root-dir
=
${root-dir}
# Globally used separator character which separates entities in a data set file name
data-set-file-name-entity-separator
=
_
# The period of no write access that needs to pass before an incoming data item is considered
# complete and ready to be processed (in seconds) [default: 300].
# Valid only when auto-detection method is used to determine if an incoming data are ready to be processed.
quiet-period
=
10
# code of the default space in openBIS to which the data will be imported
import-space-code
=
DEMO
# Comma separated names of processing threads. Each thread should have configuration properties prefixed with its name.
# E.g. 'code-extractor' property for the thread 'my-etl' should be specified as 'my-etl.code-extractor'
inputs
=
simple-dropbox, hcs-dropbox, ms-injection, ms-search
# ---------------------------------------------------------------------------
# ---------------------------------------------------------------------------
# ---------- Dropbox for unspecified data -----------------------------------
# ---------------------------------------------------------------------------
simple-dropbox.incoming-dir
=
${incoming-root-dir}/incoming-simple
simple-dropbox.incoming-data-completeness-condition
=
auto-detection
simple-dropbox.top-level-data-set-handler
=
ch.systemsx.cisd.etlserver.registrator.JythonTopLevelDataSetHandler
simple-dropbox.script-path
=
${incoming-root-dir}/dropboxes/simple-dropbox.py
simple-dropbox.storage-processor
=
ch.systemsx.cisd.etlserver.DefaultStorageProcessor
# ---------------------------------------------------------------------------
# ---------------------------------------------------------------------------
# ---------- Dropbox for HCS images -----------------------------------------
# ---------------------------------------------------------------------------
hcs-dropbox.incoming-dir
=
${incoming-root-dir}/incoming-hcs
hcs-dropbox.incoming-data-completeness-condition
=
auto-detection
hcs-dropbox.top-level-data-set-handler
=
ch.systemsx.cisd.openbis.dss.etl.jython.JythonPlateDataSetHandler
hcs-dropbox.script-path
=
${incoming-root-dir}/dropboxes/hcs-dropbox.py
hcs-dropbox.storage-processor
=
ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor
hcs-dropbox.storage-processor.data-source
=
imaging-db
hcs-dropbox.storage-processor.define-channels-per-experiment
=
false
# ---------------------------------------------------------------------------
# 'ms-injection' drop box for spectra data
# ---------------------------------------------------------------------------
# The directory to watch for incoming data.
ms-injection.incoming-dir
=
${incoming-root-dir}/incoming-ms-injection
# Determines when the incoming data should be considered complete and ready to be processed.
# Allowed values:
# - auto-detection - when no write access will be detected for a specified 'quite-period'
# - marker-file - when an appropriate marker file for the data exists.
# The default value is 'marker-file'.
ms-injection.incoming-data-completeness-condition
=
auto-detection
ms-injection.data-set-info-extractor
=
ch.systemsx.cisd.openbis.etlserver.proteomics.DataSetInfoExtractorForMSInjection
ms-injection.storage-processor
=
ch.systemsx.cisd.etlserver.DefaultStorageProcessor
ms-injection.type-extractor
=
ch.systemsx.cisd.openbis.etlserver.proteomics.TypeExtractorForMSInjection
# ---------------------------------------------------------------------------
# 'ms-search' drop box for spectra data
# ---------------------------------------------------------------------------
# The directory to watch for incoming data.
ms-search.incoming-dir
=
${incoming-root-dir}/incoming-ms-search
# Determines when the incoming data should be considered complete and ready to be processed.
# Allowed values:
# - auto-detection - when no write access will be detected for a specified 'quite-period'
# - marker-file - when an appropriate marker file for the data exists.
# The default value is 'marker-file'.
ms-search.incoming-data-completeness-condition
=
auto-detection
ms-search.data-set-info-extractor
=
ch.systemsx.cisd.openbis.etlserver.proteomics.DataSetInfoExtractorForProteinResults
ms-search.data-set-info-extractor.separator
=
+
ms-search.type-extractor
=
ch.systemsx.cisd.etlserver.SimpleTypeExtractor
ms-search.type-extractor.file-format-type
=
XML
ms-search.type-extractor.locator-type
=
RELATIVE_LOCATION
ms-search.type-extractor.data-set-type
=
PROT_RESULT
ms-search.type-extractor.is-measured
=
false
ms-search.storage-processor
=
ch.systemsx.cisd.openbis.etlserver.proteomics.StorageProcessorWithResultDataSetUploader
ms-search.storage-processor.processor
=
ch.systemsx.cisd.etlserver.DefaultStorageProcessor
ms-search.storage-processor.assuming-extended-prot-xml
=
false
ms-search.storage-processor.database.basic-name
=
${data-source.basicDatabaseName}
ms-search.storage-processor.database.kind
=
${data-source.databaseKind}
ms-search.storage-processor.database.owner
=
ms-search.storage-processor.database.password =
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