[LMS-2209] Data table extended by invalidation column, DataPE and ExternalData adjusted

SVN: 21753

openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseVersionHolder.java

@@ -24,7 +24,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess.db;
 public final class DatabaseVersionHolder
 {
     /** Current version of the database. */
-    private static final String DATABASE_VERSION = "072";// S106
+    private static final String DATABASE_VERSION = "073";// S109
 
     private DatabaseVersionHolder()
     {

openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataPE.java

@@ -122,6 +122,14 @@ public class DataPE extends AbstractIdAndCodeHolder<DataPE> implements
 
     private List<DataPE> containedDataSets = new ArrayList<DataPE>();
 
+    /**
+     * Invalidation information.
+     * <p>
+     * If not <code>null</code>, then this data set is considered as <i>invalid</i>.
+     * </p>
+     */
+    private InvalidationPE invalidation;
+
     /**
      * the index of this {@link DataPE} within its virtual parent; null if there is virtual parent
      */
@@ -668,4 +676,16 @@ public class DataPE extends AbstractIdAndCodeHolder<DataPE> implements
     {
         return getExperiment().getProject().getSpace();
     }
+
+    @ManyToOne(fetch = FetchType.EAGER)
+    @JoinColumn(name = ColumnNames.INVALIDATION_COLUMN)
+    public InvalidationPE getInvalidation()
+    {
+        return invalidation;
+    }
+
+    public void setInvalidation(final InvalidationPE invalidation)
+    {
+        this.invalidation = invalidation;
+    }
 }
\ No newline at end of file

openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/translator/DataSetTranslator.java

@@ -34,7 +34,6 @@ import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment;
 import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExperimentType;
 import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData;
 import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IEntityProperty;
-import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Invalidation;
 import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project;
 import ch.systemsx.cisd.openbis.generic.shared.basic.dto.PropertyType;
 import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Sample;
@@ -44,7 +43,6 @@ import ch.systemsx.cisd.openbis.generic.shared.dto.DataPE;
 import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription;
 import ch.systemsx.cisd.openbis.generic.shared.dto.ExperimentPE;
 import ch.systemsx.cisd.openbis.generic.shared.dto.ExternalDataPE;
-import ch.systemsx.cisd.openbis.generic.shared.dto.InvalidationPE;
 import ch.systemsx.cisd.openbis.generic.shared.dto.PropertyTypePE;
 import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE;
 import ch.systemsx.cisd.openbis.generic.shared.translator.ExperimentTranslator.LoadableFields;
@@ -160,7 +158,6 @@ public class DataSetTranslator
         externalData.setDataSetType(DataSetTypeTranslator.translate(dataPE.getDataSetType(),
                 new HashMap<PropertyTypePE, PropertyType>()));
         externalData.setDerived(dataPE.isDerived());
-        externalData.setInvalidation(tryToGetInvalidation(sampleOrNull, experiment));
         externalData.setContainer(tryToTranslateContainer(dataPE.getContainer(), baseIndexURL));
         final Collection<ExternalData> parents = new HashSet<ExternalData>();
         externalData.setParents(parents);
@@ -181,7 +178,7 @@ public class DataSetTranslator
         setProperties(dataPE, externalData);
         externalData.setExperiment(ExperimentTranslator.translate(experiment, baseIndexURL,
                 withExperimentFields));
-
+        externalData.setInvalidation(InvalidationTranslator.translate(dataPE.getInvalidation()));
         return externalData;
     }
 
@@ -228,60 +225,11 @@ public class DataSetTranslator
         }
     }
 
-    private static Invalidation tryToGetInvalidation(SamplePE sampleOrNull, ExperimentPE experiment)
-    {
-        InvalidationPE invalidationOrNull;
-        if (sampleOrNull != null)
-        {
-            invalidationOrNull = tryToGetInvalidationPE(sampleOrNull);
-        } else
-        {
-            invalidationOrNull = tryToGetInvalidationPE(experiment);
-        }
-        return translateInvalidation(invalidationOrNull);
-    }
-
-    private static InvalidationPE tryToGetInvalidationPE(SamplePE sampleOrNull)
-    {
-        if (sampleOrNull != null)
-        {
-            return sampleOrNull.getInvalidation();
-        } else
-        {
-            return null;
-        }
-    }
-
-    private static InvalidationPE tryToGetInvalidationPE(ExperimentPE experiment)
-    {
-        if (experiment != null)
-        {
-            return experiment.getInvalidation();
-        } else
-        {
-            return null;
-        }
-    }
-
-    private static Invalidation translateInvalidation(InvalidationPE invalidationPE)
-    {
-        if (invalidationPE == null)
-        {
-            return null;
-        }
-        Invalidation result = new Invalidation();
-        result.setReason(invalidationPE.getReason());
-        result.setRegistrationDate(invalidationPE.getRegistrationDate());
-        result.setRegistrator(PersonTranslator.translate(invalidationPE.getRegistrator()));
-        return result;
-    }
-
     private static Sample fillSample(Sample sample, SamplePE samplePE, boolean loadSampleProperties)
     {
         sample.setId(HibernateUtils.getId(samplePE));
         sample.setPermId(samplePE.getPermId());
         SampleTranslator.setCodes(sample, samplePE);
-        sample.setInvalidation(translateInvalidation(samplePE.getInvalidation()));
         sample.setSampleType(TypeTranslator.translate(samplePE.getSampleType()));
         sample.setIdentifier(samplePE.getSampleIdentifier().toString());
         sample.setRegistrationDate(samplePE.getRegistrationDate());

openbis/source/sql/generic/073/data-073.sql

+----------------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table DATABASE_INSTANCES
+----------------------------------------------------------------------------
+
+INSERT INTO database_instances(
+              id
+            , code
+	    	, uuid
+            , is_original_source)
+    VALUES (  nextval('DATABASE_INSTANCE_ID_SEQ')
+            , 'SYSTEM_DEFAULT'
+	    	, 'SYSTEM_DEFAULT'
+            , 'T');
+
+----------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table PERSONS
+-----------------------------------------------------------------------
+
+insert into persons
+(id
+,first_name
+,last_name
+,user_id
+,email
+,dbin_id)
+values
+(nextval('PERSON_ID_SEQ')
+,''
+,'System User'
+,'system'
+,''
+,(select id from database_instances where code = 'SYSTEM_DEFAULT') );
+
+-----------------------------------------------------------------------------------
+--  Purpose:  Create Controlled Vocabulary STORAGE_FORMAT
+-----------------------------------------------------------------------------------
+insert into controlled_vocabularies 
+       ( id
+       , code
+       , is_internal_namespace      
+       , description
+       , pers_id_registerer
+       , is_managed_internally
+       , dbin_id)
+values  (nextval('CONTROLLED_VOCABULARY_ID_SEQ')
+       , 'STORAGE_FORMAT'
+       , true
+       , 'The on-disk storage format of a data set'
+       , (select id from persons where user_id ='system')
+       , true
+       , (select id from database_instances where code = 'SYSTEM_DEFAULT'));
+
+
+-----------------------------------------------------------------------------------
+--  Purpose:  Create Controlled Vocabulary Terms for STORAGE_FORMAT
+-----------------------------------------------------------------------------------
+insert into controlled_vocabulary_terms 
+       ( id
+       , code
+       , covo_id 
+       , pers_id_registerer
+       , ordinal )
+values  (nextval('CVTE_ID_SEQ')
+       , 'PROPRIETARY'
+       , (select id from controlled_vocabularies where code = 'STORAGE_FORMAT' and is_internal_namespace = true)
+       , (select id from persons where user_id ='system')
+       , 1);
+
+insert into controlled_vocabulary_terms 
+       ( id
+       , code
+       , covo_id 
+       , pers_id_registerer
+       , ordinal)
+values  (nextval('CVTE_ID_SEQ')
+       , 'BDS_DIRECTORY'
+       , (select id from controlled_vocabularies where code = 'STORAGE_FORMAT' and is_internal_namespace = true)
+       , (select id from persons where user_id ='system')
+       , 2);
+
+------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table DATA_TYPES
+------------------------------------------------------------------
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'VARCHAR'
+,'Short text'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'MULTILINE_VARCHAR'
+ ,'Long text'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'INTEGER'
+,'Integer number'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'REAL'
+,'Real number, i.e. an inexact, variable-precision numeric type'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'BOOLEAN'
+,'True or False'
+);
+
+insert into data_types
+(id
+,code
+,description)
+values 
+(nextval('DATA_TYPE_ID_SEQ')
+,'TIMESTAMP'
+,'Both date and time. Format: yyyy-mm-dd hh:mm:ss'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'CONTROLLEDVOCABULARY'
+ ,'Controlled Vocabulary'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'MATERIAL'
+ ,'Reference to a material'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'HYPERLINK'
+ ,'Address of a web page'
+);
+
+insert into data_types
+(id
+ ,code
+ ,description)
+ values 
+ (nextval('DATA_TYPE_ID_SEQ')
+ ,'XML'
+ ,'XML document'
+);
+
+----------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table PROPERTY_TYPES
+-----------------------------------------------------------------------
+
+insert into property_types
+(id
+,code
+,description
+,label
+,daty_id
+,pers_id_registerer
+,dbin_id)
+values 
+(nextval('PROPERTY_TYPE_ID_SEQ')
+,'DESCRIPTION'
+,'A Description'
+,'Description'
+,(select id from data_types where code ='VARCHAR')
+,(select id from persons where user_id ='system')
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+--------------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table DATA_SET_TYPES
+--------------------------------------------------------------------------
+
+insert into data_set_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('DATA_SET_TYPE_ID_SEQ')
+,'UNKNOWN'
+,'Unknown'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+-------------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table FILE_FORMAT_TYPES
+-------------------------------------------------------------------------
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'HDF5'
+,'Hierarchical Data Format File, version 5'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'PROPRIETARY'
+,'Proprietary Format File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'SRF'
+,'Sequence Read Format File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'TIFF'
+,'TIFF File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'TSV'
+,'Tab Separated Values File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into file_format_types
+(id
+,code
+,description
+,dbin_id)
+values 
+(nextval('FILE_FORMAT_TYPE_ID_SEQ')
+,'XML'
+,'XML File'
+,(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+---------------------------------------------------------------------
+--  Purpose:  Insert an initial data set into the table LOCATOR_TYPES
+---------------------------------------------------------------------
+
+insert into locator_types
+(id
+,code
+,description)
+values 
+(nextval('LOCATOR_TYPE_ID_SEQ')
+,'RELATIVE_LOCATION'
+,'Relative Location'
+);
+
+---------------------------------------------------------------------
+--  Purpose:  Insert an initial data into table RELATIONSHIP_TYPES
+---------------------------------------------------------------------
+
+insert into relationship_types
+(id, 
+code, 
+label, 
+parent_label, 
+child_label, 
+description, 
+pers_id_registerer, 
+is_managed_internally, 
+is_internal_namespace, 
+dbin_id) 
+values
+(
+nextval('RELATIONSHIP_TYPE_ID_SEQ'),
+'PARENT_CHILD',
+'Parent - Child', 
+'Parent', 
+'Child', 
+'Parent - Child relationship', 
+(select id from persons where user_id ='system'), 
+'T', 
+'T', 
+(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+insert into relationship_types
+(id, 
+code, 
+label, 
+parent_label, 
+child_label, 
+description, 
+pers_id_registerer, 
+is_managed_internally, 
+is_internal_namespace, 
+dbin_id) 
+values
+(
+nextval('RELATIONSHIP_TYPE_ID_SEQ'),
+'PLATE_CONTROL_LAYOUT',
+'Plate - Control Layout', 
+'Plate', 
+'Control Layout', 
+'Plate - Control Layout relationship', 
+(select id from persons where user_id ='system'), 
+'T', 
+'T', 
+(select id from database_instances where code = 'SYSTEM_DEFAULT')
+);
+
+

openbis/source/sql/postgresql/073/domains-073.sql

+-- Creating domains
+
+CREATE DOMAIN AUTHORIZATION_ROLE AS VARCHAR(40) CHECK (VALUE IN ('ADMIN', 'POWER_USER', 'USER', 'OBSERVER', 'ETL_SERVER'));
+CREATE DOMAIN BOOLEAN_CHAR AS BOOLEAN DEFAULT FALSE;
+CREATE DOMAIN BOOLEAN_CHAR_OR_UNKNOWN AS CHAR(1) DEFAULT 'U' CHECK (VALUE IN ('F', 'T', 'U'));
+CREATE DOMAIN CODE AS VARCHAR(60);
+CREATE DOMAIN COLUMN_LABEL AS VARCHAR(128);
+CREATE DOMAIN DATA_STORE_SERVICE_KIND AS VARCHAR(40) CHECK (VALUE IN ('PROCESSING', 'QUERIES'));
+CREATE DOMAIN DATA_STORE_SERVICE_REPORTING_PLUGIN_TYPE AS VARCHAR(40) CHECK (VALUE IN ('TABLE_MODEL', 'DSS_LINK'));
+CREATE DOMAIN EVENT_TYPE AS VARCHAR(40) CHECK (VALUE IN ('DELETION', 'INVALIDATION', 'MOVEMENT'));
+CREATE DOMAIN FILE AS BYTEA;
+CREATE DOMAIN FILE_NAME AS VARCHAR(100);
+CREATE DOMAIN TEXT_VALUE AS TEXT;
+CREATE DOMAIN OBJECT_NAME AS VARCHAR(50);
+CREATE DOMAIN REAL_VALUE AS REAL;
+CREATE DOMAIN TECH_ID AS BIGINT;
+CREATE DOMAIN TIME_STAMP AS TIMESTAMP WITH TIME ZONE;
+CREATE DOMAIN TIME_STAMP_DFL AS TIMESTAMP WITH TIME ZONE NOT NULL DEFAULT CURRENT_TIMESTAMP;
+CREATE DOMAIN USER_ID AS VARCHAR(50);
+CREATE DOMAIN TITLE_100 AS VARCHAR(100);
+CREATE DOMAIN GRID_EXPRESSION AS VARCHAR(2000);
+CREATE DOMAIN GRID_ID AS VARCHAR(200);
+CREATE DOMAIN ORDINAL_INT AS BIGINT CHECK (VALUE > 0);
+CREATE DOMAIN DESCRIPTION_2000 AS VARCHAR(2000);
+CREATE DOMAIN ARCHIVING_STATUS AS VARCHAR(100) CHECK (VALUE IN ('LOCKED', 'AVAILABLE', 'ARCHIVED', 'ARCHIVE_PENDING', 'UNARCHIVE_PENDING', 'BACKUP_PENDING'));
+CREATE DOMAIN QUERY_TYPE AS VARCHAR(40) CHECK (VALUE IN ('GENERIC', 'EXPERIMENT', 'SAMPLE', 'DATA_SET', 'MATERIAL'));
+CREATE DOMAIN ENTITY_KIND AS VARCHAR(40) CHECK (VALUE IN ('SAMPLE', 'EXPERIMENT', 'DATA_SET', 'MATERIAL'));
+CREATE DOMAIN SCRIPT_TYPE AS VARCHAR(40) CHECK (VALUE IN ('DYNAMIC_PROPERTY', 'MANAGED_PROPERTY'));
\ No newline at end of file

openbis/source/sql/postgresql/073/function-073.sql

+-- Creating Functions
+
+------------------------------------------------------------------------------------
+--  Purpose:  Create function RENAME_SEQUENCE() that is required for renaming the sequences belonging to tables
+------------------------------------------------------------------------------------
+CREATE FUNCTION RENAME_SEQUENCE(OLD_NAME VARCHAR, NEW_NAME VARCHAR) RETURNS INTEGER AS $$
+DECLARE
+  CURR_SEQ_VAL   INTEGER;
+BEGIN
+  SELECT INTO CURR_SEQ_VAL NEXTVAL(OLD_NAME);
+  EXECUTE 'CREATE SEQUENCE ' || NEW_NAME || ' START WITH ' || CURR_SEQ_VAL;
+  EXECUTE 'DROP SEQUENCE ' || OLD_NAME;
+  RETURN CURR_SEQ_VAL;
+END;
+$$ LANGUAGE 'plpgsql';
+
+
+------------------------------------------------------------------------------------
+--  Purpose:  Create trigger CONTROLLED_VOCABULARY_CHECK 
+------------------------------------------------------------------------------------
+
+CREATE OR REPLACE FUNCTION CONTROLLED_VOCABULARY_CHECK() RETURNS trigger AS $$
+DECLARE
+   v_code  CODE;
+BEGIN
+
+   select code into v_code from data_types where id = NEW.daty_id;
+
+   -- Check if the data is of type "CONTROLLEDVOCABULARY"
+   if v_code = 'CONTROLLEDVOCABULARY' then
+      if NEW.covo_id IS NULL then
+         RAISE EXCEPTION 'Insert/Update of Property Type (Code: %) failed, as its Data Type is CONTROLLEDVOCABULARY, but it is not linked to a Controlled Vocabulary.', NEW.code;
+      end if;
+   end if;
+
+   RETURN NEW;
+
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER CONTROLLED_VOCABULARY_CHECK BEFORE INSERT OR UPDATE ON PROPERTY_TYPES
+    FOR EACH ROW EXECUTE PROCEDURE CONTROLLED_VOCABULARY_CHECK();
+
+
+------------------------------------------------------------------------------------
+--  Purpose:  Create trigger EXTERNAL_DATA_STORAGE_FORMAT_CHECK 
+------------------------------------------------------------------------------------
+
+CREATE OR REPLACE FUNCTION EXTERNAL_DATA_STORAGE_FORMAT_CHECK() RETURNS trigger AS $$
+DECLARE
+   v_covo_code  CODE;
+   data_code CODE;
+BEGIN
+
+   select code into v_covo_code from controlled_vocabularies
+      where is_internal_namespace = true and 
+         id = (select covo_id from controlled_vocabulary_terms where id = NEW.cvte_id_stor_fmt);
+   -- Check if the data storage format is a term of the controlled vocabulary "STORAGE_FORMAT"
+   if v_covo_code != 'STORAGE_FORMAT' then
+      select code into data_code from data where id = NEW.data_id; 
+      RAISE EXCEPTION 'Insert/Update of Data (Code: %) failed, as its Storage Format is %, but is required to be STORAGE_FORMAT.', data_code, v_covo_code;
+   end if;
+
+   RETURN NEW;
+
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER EXTERNAL_DATA_STORAGE_FORMAT_CHECK BEFORE INSERT OR UPDATE ON EXTERNAL_DATA
+    FOR EACH ROW EXECUTE PROCEDURE EXTERNAL_DATA_STORAGE_FORMAT_CHECK();
+
+   
+------------------------------------------------------------------------------------
+--  Purpose:  Create triggers for checking sample code uniqueness 
+------------------------------------------------------------------------------------
+
+CREATE OR REPLACE FUNCTION SAMPLE_CODE_UNIQUENESS_CHECK() RETURNS trigger AS $$
+DECLARE
+   counter  INTEGER;
+BEGIN
+  LOCK TABLE samples IN EXCLUSIVE MODE;
+  
+	  IF (NEW.samp_id_part_of is NULL) THEN
+		  IF (NEW.dbin_id is not NULL) THEN
+			  SELECT count(*) into counter FROM samples 
+		      where id != NEW.id and code = NEW.code and samp_id_part_of is NULL and dbin_id = NEW.dbin_id;
+        IF (counter > 0) THEN
+				  RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because database instance sample with the same code already exists.', NEW.code;
+        END IF;
+		  ELSIF (NEW.space_id is not NULL) THEN
+			  SELECT count(*) into counter FROM samples 
+				  where id != NEW.id and code = NEW.code and samp_id_part_of is NULL and space_id = NEW.space_id;
+			  IF (counter > 0) THEN
+				  RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because space sample with the same code already exists.', NEW.code;
+			  END IF;
+      END IF;
+    ELSE
+		  IF (NEW.dbin_id is not NULL) THEN
+			  SELECT count(*) into counter FROM samples 
+				  where id != NEW.id and code = NEW.code and samp_id_part_of = NEW.samp_id_part_of and dbin_id = NEW.dbin_id;
+			  IF (counter > 0) THEN
+				  RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because database instance sample with the same code and being the part of the same container already exists.', NEW.code;
+			  END IF;
+		  ELSIF (NEW.space_id is not NULL) THEN
+			  SELECT count(*) into counter FROM samples 
+				  where id != NEW.id and code = NEW.code and samp_id_part_of = NEW.samp_id_part_of and space_id = NEW.space_id;
+			  IF (counter > 0) THEN
+				  RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because space sample with the same code and being the part of the same container already exists.', NEW.code;
+			  END IF;
+		  END IF;
+     END IF;   
+  
+  RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER SAMPLE_CODE_UNIQUENESS_CHECK BEFORE INSERT OR UPDATE ON SAMPLES
+    FOR EACH ROW EXECUTE PROCEDURE SAMPLE_CODE_UNIQUENESS_CHECK();
+    
+
+CREATE OR REPLACE FUNCTION SAMPLE_SUBCODE_UNIQUENESS_CHECK() RETURNS trigger AS $$
+DECLARE
+   counter  INTEGER;
+   unique_subcode  BOOLEAN_CHAR;
+BEGIN
+  LOCK TABLE samples IN EXCLUSIVE MODE;
+  
+  SELECT is_subcode_unique into unique_subcode FROM sample_types WHERE id = NEW.saty_id;
+  
+  IF (unique_subcode) THEN
+    IF (NEW.dbin_id is not NULL) THEN
+			SELECT count(*) into counter FROM samples 
+				where id != NEW.id and code = NEW.code and saty_id = NEW.saty_id and dbin_id = NEW.dbin_id;
+			IF (counter > 0) THEN
+				RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because database instance sample of the same type with the same subcode already exists.', NEW.code;
+			END IF;
+		ELSIF (NEW.space_id is not NULL) THEN
+			SELECT count(*) into counter FROM samples 
+				where id != NEW.id and code = NEW.code and saty_id = NEW.saty_id and space_id = NEW.space_id;
+			IF (counter > 0) THEN
+				RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because space sample of the same type with the same subcode already exists.', NEW.code;
+			END IF;
+		END IF;
+  END IF;
+  
+  RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER SAMPLE_SUBCODE_UNIQUENESS_CHECK BEFORE INSERT OR UPDATE ON SAMPLES
+    FOR EACH ROW EXECUTE PROCEDURE SAMPLE_SUBCODE_UNIQUENESS_CHECK();
+    
+------------------------------------------------------------------------------------
+--  Purpose:  Create trigger MATERIAL/SAMPLE/EXPERIMENT/DATA_SET _PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK
+--            It checks that if material property value is assigned to the entity,
+--						then the material type is equal to the one described by property type.
+------------------------------------------------------------------------------------
+
+CREATE OR REPLACE FUNCTION MATERIAL_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$
+DECLARE
+   v_type_id  CODE;
+   v_type_id_prop  CODE;
+BEGIN
+   if NEW.mate_prop_id IS NOT NULL then
+			-- find material type id of the property type 
+			select pt.maty_prop_id into v_type_id_prop 
+			  from material_type_property_types etpt, property_types pt 
+			 where NEW.mtpt_id = etpt.id AND etpt.prty_id = pt.id;
+		
+			if v_type_id_prop IS NOT NULL then
+				-- find material type id of the material which consists the entity's property value
+				select entity.maty_id into v_type_id 
+				  from materials entity
+				 where NEW.mate_prop_id = entity.id;
+				if v_type_id != v_type_id_prop then
+					RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', 
+							 NEW.mate_prop_id, v_type_id, v_type_id_prop;
+				end if;
+			end if;
+   end if;
+   RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER MATERIAL_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON material_properties
+    FOR EACH ROW EXECUTE PROCEDURE MATERIAL_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK();
+    
+CREATE OR REPLACE FUNCTION SAMPLE_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$
+DECLARE
+   v_type_id  CODE;
+   v_type_id_prop  CODE;
+BEGIN
+   if NEW.mate_prop_id IS NOT NULL then
+			-- find material type id of the property type 
+			select pt.maty_prop_id into v_type_id_prop 
+			  from sample_type_property_types etpt, property_types pt 
+			 where NEW.stpt_id = etpt.id AND etpt.prty_id = pt.id;
+		
+			if v_type_id_prop IS NOT NULL then
+				-- find material type id of the material which consists the entity's property value
+				select entity.maty_id into v_type_id 
+				  from materials entity
+				 where NEW.mate_prop_id = entity.id;
+				if v_type_id != v_type_id_prop then
+					RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', 
+												 NEW.mate_prop_id, v_type_id, v_type_id_prop;
+				end if;
+			end if;
+   end if;
+   RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER SAMPLE_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON sample_properties
+    FOR EACH ROW EXECUTE PROCEDURE SAMPLE_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK();
+    
+CREATE OR REPLACE FUNCTION EXPERIMENT_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$
+DECLARE
+   v_type_id  CODE;
+   v_type_id_prop  CODE;
+BEGIN
+   if NEW.mate_prop_id IS NOT NULL then
+			-- find material type id of the property type 
+			select pt.maty_prop_id into v_type_id_prop 
+			  from experiment_type_property_types etpt, property_types pt 
+			 where NEW.etpt_id = etpt.id AND etpt.prty_id = pt.id;
+		
+			if v_type_id_prop IS NOT NULL then
+				-- find material type id of the material which consists the entity's property value
+				select entity.maty_id into v_type_id 
+				  from materials entity
+				 where NEW.mate_prop_id = entity.id;
+				if v_type_id != v_type_id_prop then
+					RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', 
+												 NEW.mate_prop_id, v_type_id, v_type_id_prop;
+				end if;
+			end if;
+   end if;
+   RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER EXPERIMENT_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON experiment_properties
+    FOR EACH ROW EXECUTE PROCEDURE EXPERIMENT_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK();
+ 
+ -- data set
+CREATE OR REPLACE FUNCTION DATA_SET_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$
+DECLARE
+   v_type_id  CODE;
+   v_type_id_prop  CODE;
+BEGIN
+   if NEW.mate_prop_id IS NOT NULL then
+			-- find material type id of the property type 
+			select pt.maty_prop_id into v_type_id_prop 
+			  from data_set_type_property_types dstpt, property_types pt 
+			 where NEW.dstpt_id = dstpt.id AND dstpt.prty_id = pt.id;
+		
+			if v_type_id_prop IS NOT NULL then
+				-- find material type id of the material which consists the entity's property value
+				select entity.maty_id into v_type_id 
+				  from materials entity
+				 where NEW.mate_prop_id = entity.id;
+				if v_type_id != v_type_id_prop then
+					RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', 
+												 NEW.mate_prop_id, v_type_id, v_type_id_prop;
+				end if;
+			end if;
+   end if;
+   RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER DATA_SET_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON data_set_properties
+    FOR EACH ROW EXECUTE PROCEDURE DATA_SET_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK();
\ No newline at end of file

openbis/source/sql/postgresql/073/grants-073.sql

+-- Granting SELECT privilege to group OPENBIS_READONLY
+
+GRANT SELECT ON SEQUENCE attachment_content_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE attachment_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE code_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE controlled_vocabulary_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE cvte_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_set_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_set_relationship_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_set_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_store_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE DATA_STORE_SERVICES_ID_SEQ TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE data_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE database_instance_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE dstpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE etpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE event_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE experiment_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE experiment_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE experiment_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE file_format_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE space_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE invalidation_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE locator_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE material_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE material_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE material_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE mtpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE perm_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE person_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE project_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE property_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE role_assignment_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE sample_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE sample_property_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE sample_type_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE stpt_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE authorization_group_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE filter_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON SEQUENCE query_id_seq TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE attachment_contents TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE attachments TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE controlled_vocabularies TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE controlled_vocabulary_terms TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_relationships TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_set_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_stores TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE data_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE DATA_STORE_SERVICES TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE DATA_STORE_SERVICE_DATA_SET_TYPES TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE database_instances TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE database_version_logs TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE events TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiment_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE experiments TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE external_data TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE file_format_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE spaces TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE invalidations TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE locator_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE material_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE materials TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE persons TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE projects TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE role_assignments TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_properties TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_type_property_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE sample_types TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE samples TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE authorization_groups TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE authorization_group_persons TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE filters TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE queries TO GROUP OPENBIS_READONLY;
+GRANT SELECT ON TABLE scripts TO GROUP OPENBIS_READONLY;

openbis/source/sql/postgresql/migration/migration-072-073.sql

+-- Migration from 072 to 073
+
+ALTER TABLE DATA ADD COLUMN INVA_ID TECH_ID;
+ALTER TABLE DATA ADD CONSTRAINT DATA_INVA_FK FOREIGN KEY (INVA_ID) REFERENCES INVALIDATIONS(ID);
+CREATE INDEX DATA_INVA_FK_I ON DATA (INVA_ID);

openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/translator/DataSetTranslatorTest.java

@@ -121,9 +121,8 @@ public class DataSetTranslatorTest extends AssertJUnit
         personPE.setUserId("user");
         personPE.setDatabaseInstance(databaseInstancePE);
         invalidationPE.setRegistrator(personPE);
-        samplePE.setInvalidation(invalidationPE);
+        externalDataPE.setInvalidation(invalidationPE);
         externalDataPE.setSampleAcquiredFrom(samplePE);
-
         ExternalData data = DataSetTranslator.translate(externalDataPE, BASE_INDEX_URL);
 
         DataSet translated = data.tryGetAsDataSet();

openbis/sourceTest/sql/postgresql/073/001=attachment_contents.tsv

+1	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+2	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+3	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+4	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+5	\\x636f646509555345522e6465736372697074696f6e0973747564795f4f626a6563740973747564795f6f626a6563745f547970650970726f6a6563740970726f63657373696e675f696e737472756374696f6e730963656c6c5f706c617465730a4558503509412073696d706c65206578706572696d656e7409564952555331095649525553095959093e2070726f63657373696e672d696e737472756374696f6e732e747874093e2063656c6c506c617465732e7478740a4558503609616e6f74686572206578706572696d656e7409564952555331095649525553096b6f6b6f09090a
+6	\\x33564350310a33564350320a3356435033
+7	\\x616c610a6d610a6b6f74610a610a6b6f740a6a6573740a6964696f7461

openbis/sourceTest/sql/postgresql/073/002=attachments.tsv

+1	2	exampleExperiments.txt	2008-12-10 13:48:17.996703+01	1	2	1	\N	\N	\N	\N
+2	2	exampleExperiments.txt	2008-12-10 13:49:14.564025+01	2	2	2	\N	\N	\N	\N
+3	2	exampleExperiments.txt	2008-12-10 13:49:20.23603+01	3	2	3	\N	\N	\N	\N
+4	2	exampleExperiments.txt	2008-12-10 13:49:27.90141+01	4	2	4	\N	\N	\N	\N
+5	8	exampleExperiments.txt	2008-12-10 13:49:48.879301+01	1	2	5	\N	\N	\N	\N
+6	8	cellPlates.txt	2008-12-10 13:51:10.050748+01	1	2	6	\N	\N	\N	\N
+7	\N	sampleHistory.txt	2009-06-09 17:00:00+02	1	2	7	987	\N	\N	\N

openbis/sourceTest/sql/postgresql/073/005=controlled_vocabularies.tsv

+1	PLATE_GEOMETRY	The geometry or dimensions of a plate	2008-11-05 09:18:00.622+01	1	t	t	1	2009-03-23 15:34:44.462776+01	t	\N
+2	STORAGE_FORMAT	The on-disk storage format of a data set	2008-11-05 09:18:00.622+01	1	t	t	1	2009-03-23 15:34:44.462776+01	t	\N
+3	ORGANISM	available-organism	2008-11-05 09:18:30.327+01	2	f	f	1	2009-03-23 15:34:44.462776+01	t	\N
+4	GENDER	\N	2008-11-05 09:18:30.421+01	2	f	f	1	2009-03-23 15:34:44.462776+01	t	\N
+5	HUMAN	Humans	2008-11-05 09:18:30.983+01	2	f	f	1	2009-03-23 15:34:44.462776+01	t	\N

openbis/sourceTest/sql/postgresql/073/006=controlled_vocabulary_terms.tsv

+1	96_WELLS_8X12	2008-11-05 09:18:00.622+01	1	1	\N	\N	1	t
+2	384_WELLS_16X24	2008-11-05 09:18:00.622+01	1	1	\N	\N	2	t
+3	1536_WELLS_32X48	2008-11-05 09:18:00.622+01	1	1	\N	\N	3	t
+4	PROPRIETARY	2008-11-05 09:18:00.622+01	2	1	\N	\N	1	t
+5	BDS_DIRECTORY	2008-11-05 09:18:00.622+01	2	1	\N	\N	2	t
+6	RAT	2008-11-05 09:18:30.327+01	3	2	\N	\N	1	t
+7	DOG	2008-11-05 09:18:30.327+01	3	2	\N	\N	2	t
+8	HUMAN	2008-11-05 09:18:30.327+01	3	2	\N	\N	3	t
+9	GORILLA	2008-11-05 09:18:30.327+01	3	2	\N	\N	4	t
+10	FLY	2008-11-05 09:18:30.327+01	3	2	\N	\N	5	t
+11	MALE	2008-11-05 09:18:30.421+01	4	2	\N	\N	1	t
+12	FEMALE	2008-11-05 09:18:30.421+01	4	2	\N	\N	2	t
+13	MAN	2008-11-05 09:18:30.983+01	5	2	\N	\N	1	t
+14	WOMAN	2008-11-05 09:18:30.983+01	5	2	\N	\N	2	t
+15	CHILD	2008-11-05 09:18:31.061+01	5	2	\N	\N	3	t

openbis/sourceTest/sql/postgresql/073/007=data.tsv

+2	20081105092158673-1	2	\N	2008-11-05 09:21:58.688+01	2008-11-05 09:21:58.798+01	f	t	2009-03-23 15:34:44.462776+01	2	1	f	982	\N	\N	\N	\N
+4	20081105092159188-3	2	\N	2008-11-05 09:21:59.203+01	2008-11-05 09:21:59.313+01	f	t	2009-03-23 15:34:44.462776+01	2	1	t	\N	\N	\N	\N	\N
+5	20081105092159111-1	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:20:21.646654+01	f	t	2009-03-23 15:34:44.462776+01	18	1	f	1042	\N	\N	\N	\N
+6	20081105092159222-2	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:21:11.479816+01	f	t	2009-03-23 15:34:44.462776+01	19	1	f	1043	\N	\N	\N	\N
+7	20081105092159333-3	2	\N	2008-11-05 09:21:59.203+01	2009-02-09 12:21:47.815468+01	f	t	2009-03-23 15:34:44.462776+01	20	1	f	1044	\N	\N	\N	\N
+8	20081105092259000-8	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N
+9	20081105092259000-9	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N
+10	20081105092259900-0	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N
+11	20081105092259900-1	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N
+12	20081105092359990-2	2	\N	2008-11-05 09:22:59.203+01	2008-11-05 09:22:59.313+01	f	t	2009-03-23 15:34:44.462776+01	8	1	t	\N	\N	\N	\N	\N
+13	20110509092359990-10	4	\N	2011-05-09 10:22:59.203+02	2011-05-09 10:22:59.313+02	f	t	2011-05-09 16:34:44.462776+02	8	1	t	\N	\N	\N	\N	\N
+14	20110509092359990-11	2	\N	2011-05-09 10:22:59.203+02	2011-05-09 10:22:59.313+02	f	t	2011-05-09 16:34:44.462776+02	8	1	t	\N	\N	1	13	\N
+15	20110509092359990-12	2	\N	2011-05-09 10:22:59.203+02	2011-05-09 10:22:59.313+02	f	t	2011-05-09 16:34:44.462776+02	8	1	t	\N	\N	2	13	\N

openbis/sourceTest/sql/postgresql/073/008=data_set_properties.tsv

+1	2	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.085+02
+2	4	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.089+02
+3	5	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.09+02
+4	6	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.09+02
+5	7	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+6	8	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+7	9	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+8	10	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+9	11	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+10	12	1	no comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+11	14	1	non-virtual comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+12	15	1	non-virtual comment	\N	\N	2	2009-04-24 14:45:06.348563+02	2009-04-24 14:45:07.091+02
+13	5	4	\N	12	\N	2	2009-09-15 08:45:48.059548+02	2009-09-15 08:45:48.639+02
+14	5	3	\N	\N	22	2	2009-09-15 08:45:48.059548+02	2009-09-15 08:45:48.64+02
+15	5	2	\N	\N	2498	2	2009-09-15 08:45:48.059548+02	2009-09-15 08:45:48.64+02

openbis/sourceTest/sql/postgresql/073/009=data_set_relationships.tsv

+2	4
+7	8
+2	9
+5	9
+6	9
+7	9
+9	10
+9	11
+10	12
+11	12

openbis/sourceTest/sql/postgresql/073/010=data_set_type_property_types.tsv

+1	2	14	t	f	2	2009-04-24 14:45:06.348563+02	\N	1	\N
+2	2	26	f	f	2	2009-09-15 08:44:10.351183+02	\N	2	\N
+3	2	25	f	f	2	2009-09-15 08:44:16.365221+02	\N	3	\N
+4	2	13	f	f	2	2009-09-15 08:44:36.342115+02	\N	4	\N

openbis/sourceTest/sql/postgresql/073/011=data_set_types.tsv

+1	UNKNOWN	Unknown	1	2009-03-23 15:34:44.462776+01	\N	\N	f
+2	HCS_IMAGE	High Content Screening Image	1	2009-03-23 15:34:44.462776+01	\N	\N	f
+3	HCS_IMAGE_ANALYSIS_DATA	Data derived from analysis of HCS images	1	2009-03-23 15:34:44.462776+01	\N	\N	f
+4	CONTAINER_TYPE	A container (virtual) data set type	1	2011-05-09 12:24:44.462776+02	\N	\N	t