* An admin-console script that creates optional meta-data for the screening test data. Running this script is not required.
* An admin-console script that creates optional meta-data for the screening test data.
Running this script is not required.
* bash
* bash
* create-empty-screening-db.sh
* create-empty-screening-db.sh
* A script that initializes an empty screening database. This must be run to create the initial database for the test data if no database exists.
* A script that initializes an empty screening database. This must be run to create the initial
database for the test data if no database exists.
* python
* python
* generate-test-plate.py
* generate-test-plate.py
* A python script that generates raw-images for a plate. It can be configured, by modifying the source, to generate time and/or depth points and produce merged (RGB) or split (R, G, B in separate files) files.
* A python script that generates raw-images for a plate. It can be configured,
by modifying the source, to generate time and/or depth points and produce merged (RGB) or
split (R, G, B in separate files) files.
* Later, this will be expanded to produce overlay images as well
* Later, this will be expanded to produce overlay images as well
* running generate-test-plate.py will produce a folder named PLATONIC containing images in the current directory
* running generate-test-plate.py will produce a folder named PLATONIC containing images
in the current directory
* n.b. This script will only run on MacOS 10.5+
* n.b. This script will only run on MacOS 10.5+
Use
Use
===
===
Follow these instructions to use this infrastructure. It instructions assume that the screening version of openBIS is running inside Eclipse.
Follow these instructions to use this infrastructure. It instructions assume that
the screening version of openBIS is running inside Eclipse.
Initialize DB
Initialize DB
-------------
-------------
...
@@ -63,6 +69,7 @@ Start openBIS
...
@@ -63,6 +69,7 @@ Start openBIS
Generate and Register Plate
Generate and Register Plate
--------------
--------------
Run the generate-test-plate.py script. If your plate is not called PLATONIC, you will need to rename the folder to the name of your plate. Put the folder with the images into the incoming-platonic dropbox.
Run the generate-test-plate.py script. If your plate is not called PLATONIC, you will need
to rename the folder to the name of your plate. Put the folder with the images into the incoming-platonic dropbox.
View the plate in openBIS; you should see the images you registered.
View the plate in openBIS; you should see the images you registered.
