first steps to toolbox

MatlabPybis_example.m

 % demo script for accessing openBIS from Matlab using Pybis
 % we use Matlab's capability to call Python libraries
 % Pybis documentation is available here:
-% https://sissource.ethz.ch/sispub/pybis/blob/master/src/python/PyBis/README.md
+% https://sissource.ethz.ch/sispub/openbis/blob/master/pybis/src/python/README.md
 
 
 %% first check the Python version
@@ -12,7 +12,7 @@ pyversion
 % on Windows: pyversion 3.6
 
 %% enter username and password for openBIS
-username = ''; % enter user name
+username = 'XYZ'; % enter user name
 pw = passwordEntryDialog('CheckPasswordLength',0);
 
 %% connect to openBIS
@@ -31,7 +31,7 @@ datasets
 ds_id = '20101105142049776-6512';
 ds = obi.get_dataset(ds_id);
 % download
-data_dir = '~/Data/Projects/MatlabOpenbis/data';
+data_dir = 'data';
 ds.download(pyargs('destination', data_dir, 'wait_until_finished', false));
 
 %% list files / directories in dataset

df_to_cell.m

+function [matlab_cell] = df_to_cell(df)
+csv_temp = sprintf('%s.csv', tempname);
+df.to_csv(csv_temp);
+matlab_cell = readtable(csv_temp);
+delete(csv_temp);
+end
\ No newline at end of file

download_ds_files.m

+function [file_list] = download_ds_files(obi, ds_id, data_dir)
+%UNTITLED Summary of this function goes here
+%   Detailed explanation goes here
+
+ds = obi.get_dataset(ds_id);
+% download
+ds.download(pyargs('destination', data_dir, 'wait_until_finished', false));
+
+% get list and convert to Matlab cell array
+file_list = cell(ds.get_file_list);
+
+end
+

get_datasets.m

+function [datasets] = get_datasets(ds_type)
+%UNTITLED2 Summary of this function goes here
+%   Detailed explanation goes here
+
+global obi
+
+datasets = obi.get_datasets(pyargs('type',ds_type));
+datasets = df_to_cell(datasets.df);
+end

login.m

+function login(url, user, pw)
+%UNTITLED Summary of this function goes here
+%   Detailed explanation goes here
+
+global obi
+
+obi = py.pybis.Openbis(url, pyargs('verify_certificates', 0));
+obi.login(user, pw, pyargs('save_token', 1));
+
+end
+