CCS-35 SP-627 : Make yeastlab ipad app use new java infrastructure

SVN: 29173

plasmid/.classpath

@@ -17,5 +17,6 @@
 	<classpathentry kind="lib" path="/libraries/commons-lang/commons-lang.jar" sourcepath="/libraries/commons-lang/src.zip"/>
 	<classpathentry kind="lib" path="/libraries/commons-io/commons-io.jar" sourcepath="/libraries/commons-io/src.zip"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry combineaccessrules="false" kind="src" path="/openbis-ipad"/>
 	<classpathentry kind="output" path="targets/classes"/>
 </classpath>

plasmid/.project

@@ -14,15 +14,15 @@
 	<natures>
 		<nature>org.eclipse.jdt.core.javanature</nature>
 	</natures>
-        <filteredResources>
-                <filter>
-                        <id>1332321366607</id>
-                        <name></name>
-                        <type>26</type>
-                        <matcher>
-                                <id>org.eclipse.ui.ide.multiFilter</id>
-                                <arguments>1.0-name-matches-true-false-.git</arguments>
-                        </matcher>
-                </filter>
-        </filteredResources>
+	<filteredResources>
+		<filter>
+			<id>1332321366607</id>
+			<name></name>
+			<type>26</type>
+			<matcher>
+				<id>org.eclipse.ui.ide.multiFilter</id>
+				<arguments>1.0-name-matches-true-false-.git</arguments>
+			</matcher>
+		</filter>
+	</filteredResources>
 </projectDescription>

plasmid/source/java/ch/ethz/bsse/cisd/yeastlab/ipad/v2/server/IpadYeastlabUtilities.java

+/*
+ * Copyright 2013 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.ethz.bsse.cisd.yeastlab.ipad.v2.server;
+
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import ch.systemsx.cisd.etlserver.registrator.api.v1.ISample;
+import ch.systemsx.cisd.openbis.ipad.v2.server.IpadServiceUtilities;
+
+/**
+ * @author cramakri
+ */
+public class IpadYeastlabUtilities
+{
+
+    /**
+     * Return a collection of properties, ordered by display ordering, skipping propsToIgnore.
+     */
+    public static List<String> orderedPropertiesForSampleIgnoring(ISample sample,
+            List<String> propsToIgnore)
+    {
+        return null;
+    }
+
+    /**
+     * Convert a sample to a dictionary, ignoring the specified properties.
+     * <p>
+     * <ul>
+     * <li>Uses the NAME property to construct the summary.</li>
+     * <li>Returns empty children.</li>
+     * <li>Callers may need to modify the summary and children as well</li>
+     * </ul>
+     */
+    public static Map<String, Object> samplToDictWithPropsIgnoring(ISample sample,
+            boolean wantProps, List<String> propsToIgnore)
+    {
+        HashMap<String, Object> sampleDict = new HashMap<String, Object>();
+        sampleDict.put("SUMMARY_HEADER", sample.getCode());
+        String name = sample.getPropertyValue("NAME");
+        String summary = (null != name) ? "Name: " + name : "??";
+        sampleDict.put("SUMMARY", summary);
+        sampleDict.put("IDENTIFIER", sample.getSampleIdentifier());
+        sampleDict.put("PERM_ID", sample.getPermId());
+
+        HashMap<String, String> refconSample = new HashMap<String, String>();
+        refconSample.put("code", sample.getCode());
+        refconSample.put("entityKind", "SAMPLE");
+        refconSample.put("entityType", sample.getSampleType());
+        sampleDict.put("REFCON", IpadServiceUtilities.jsonEncodedValue(refconSample));
+        sampleDict.put("CATEGORY", sample.getSampleType());
+        sampleDict.put("CHILDREN", IpadServiceUtilities.jsonEncodedValue(Collections.emptyList()));
+
+        if (wantProps)
+        {
+            List<String> sampleProperties =
+                    orderedPropertiesForSampleIgnoring(sample, propsToIgnore);
+            sampleDict.put("PROPERTIES", IpadServiceUtilities.jsonEncodedValue(sampleProperties));
+        }
+
+        sampleDict.put("ROOT_LEVEL", false);
+        return sampleDict;
+    }
+}