LMS-1264 DSU tracking system

SVN: 13496

deep_sequencing_unit/.classpath

@@ -13,5 +13,7 @@
 	<classpathentry kind="lib" path="/libraries/jmock/objenesis/objenesis-1.0.jar"/>
 	<classpathentry kind="lib" path="/libraries/jmock/jmock.jar"/>
 	<classpathentry kind="lib" path="/libraries/log4j/log4j.jar" sourcepath="/libraries/log4j/src.zip"/>
+	<classpathentry kind="lib" path="/libraries/mail/mail.jar"/>
+	<classpathentry kind="lib" path="/libraries/gwt1.7/gwt-isserializable.jar"/>
 	<classpathentry kind="output" path="targets/classes"/>
 </classpath>

deep_sequencing_unit/etc/tracking-local-database

+lastSeenSequencingSampleId	lastSeenFlowLaneSampleId	lastSeenDatasetId
+0	0	0
\ No newline at end of file

deep_sequencing_unit/etc/tracking-service.properties

@@ -2,6 +2,13 @@ openbis-user=tpylak
 openbis-password=xxx
 openbis-server-url = http://localhost:8888/openbis
 
+
+# SMTP properties (must start with 'mail' to be considered).
+mail.smtp.host = file://${root}
+#mail.from = datastore_server@localhost
+mail.smtp.user = 
+mail.smtp.password = 
+
 notification-email-from = openbis-noreply@bsse.ethz.ch
 notification-email-reply-to = tomasz.pylak@bsse.ethz.ch
 notification-email-subject = Entity creation notification
@@ -10,4 +17,4 @@ notification-email-ending = END.
 # Recipients that will receive notifications when entity connected with sequencing sample 
 # with certain AFFILIATION value. Property key should contain affiliation vocabulary term code
 # with '-notification-email-contact' suffix, e.g. for 'FMI' affiliation:
-# FMI-affiliation-notification-email-contact = fmi@bsse.ethz.ch
\ No newline at end of file
+# FMI-affiliation-notification-email-contact = fmi@bsse.ethz.ch

deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/IEntityTrackingEmailGenerator.java

@@ -21,7 +21,7 @@ import java.util.List;
 /**
  * @author Piotr Buczek
  */
-interface IEntityTrackingEmailGenerator
+public interface IEntityTrackingEmailGenerator
 {
     /**
      * Generates all {@link Email}s to be send containing information about

deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/Parameters.java

@@ -22,7 +22,6 @@ import java.util.Properties;
 
 import ch.systemsx.cisd.common.mail.IMailClient;
 import ch.systemsx.cisd.common.mail.MailClient;
-import ch.systemsx.cisd.common.utilities.PropertyUtils;
 
 /**
  * @author Tomasz Pylak

deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java

@@ -18,14 +18,10 @@ package ch.ethz.bsse.cisd.dsu.tracking.main;
 
 import java.util.Properties;
 
-import org.apache.log4j.Logger;
-
 import ch.ethz.bsse.cisd.dsu.tracking.EntityTrackingEmailGenerator;
 import ch.ethz.bsse.cisd.dsu.tracking.IEntityTrackingEmailGenerator;
 import ch.ethz.bsse.cisd.dsu.tracking.utils.LogUtils;
 import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException;
-import ch.systemsx.cisd.common.logging.LogCategory;
-import ch.systemsx.cisd.common.logging.LogFactory;
 import ch.systemsx.cisd.common.logging.LogInitializer;
 import ch.systemsx.cisd.common.mail.IMailClient;
 import ch.systemsx.cisd.common.spring.HttpInvokerUtils;