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Commit 1f4d0b99 authored by tpylak's avatar tpylak
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SE-133 YeastX - fix integration tests

SVN: 12758
parent 36ab911d
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...@@ -23,9 +23,6 @@ ERROR: file3.mzXML - no mapping could be found for this dataset ...@@ -23,9 +23,6 @@ ERROR: file3.mzXML - no mapping could be found for this dataset
faulty-to-many-mapping-files -------------------- faulty-to-many-mapping-files --------------------
ERROR: No datasets from the directory 'faulty-to-many-mapping-files' can be processed because there is more than one file with extension '[tsv]'. ERROR: No datasets from the directory 'faulty-to-many-mapping-files' can be processed because there is more than one file with extension '[tsv]'.
faulty-unknow-property --------------------
ERROR: file1.mzXML - cannot upload the file: Property type with code 'unknow-property' does not exist!
faulty-unknown-mapping -------------------- faulty-unknown-mapping --------------------
ERROR: file1.mzXML - cannot upload the file: there is no sample which matches the criteria <Samples from the group 'TEST' with property 'samplename' set to 'unknown' in any experiment> ERROR: file1.mzXML - cannot upload the file: there is no sample which matches the criteria <Samples from the group 'TEST' with property 'samplename' set to 'unknown' in any experiment>
ERROR: file2.mzXML - cannot upload the file: No project 'UNKNOWN' could be found in the 'TEST' group! ERROR: file2.mzXML - cannot upload the file: No project 'UNKNOWN' could be found in the 'TEST' group!
...@@ -34,6 +31,9 @@ ERROR: file4.mzXML - cannot upload the file: experiment and project columns shou ...@@ -34,6 +31,9 @@ ERROR: file4.mzXML - cannot upload the file: experiment and project columns shou
ERROR: file5.mzXML - cannot upload the file: error when checking if sample '/unknown/x' belongs to an experiment: No group could be found for identifier 'CISD:/UNKNOWN'. ERROR: file5.mzXML - cannot upload the file: error when checking if sample '/unknown/x' belongs to an experiment: No group could be found for identifier 'CISD:/UNKNOWN'.
ERROR: file5.mzXML - cannot upload the file: No group could be found for identifier 'CISD:/UNKNOWN'. ERROR: file5.mzXML - cannot upload the file: No group could be found for identifier 'CISD:/UNKNOWN'.
faulty-unknown-property --------------------
ERROR: file1.mzXML - cannot upload the file: Property type with code 'unknown-property' does not exist!
faulty-wrong-conversion -------------------- faulty-wrong-conversion --------------------
ERROR: file1.mzXML - cannot upload the file: conversion column cannot be empty for this type of file. ERROR: file1.mzXML - cannot upload the file: conversion column cannot be empty for this type of file.
ERROR: file2.eicML - cannot upload the file: conversion column must be empty for this type of file. ERROR: file2.eicML - cannot upload the file: conversion column must be empty for this type of file.
......
# openbis-user@mailinator.pl # openbis-user@mailinator.pl
file_name sample group experiment project conversion unknow-property file_name sample group experiment project conversion unknown-property
file1.mzXML s32 TEST fiaML value file1.mzXML s32 TEST fiaML value
...@@ -169,7 +169,7 @@ function assert_correct_incoming_contents { ...@@ -169,7 +169,7 @@ function assert_correct_incoming_contents {
assert_correct_incoming_content faulty-no-mapping 4 true assert_correct_incoming_content faulty-no-mapping 4 true
assert_correct_incoming_content faulty-non-unique-mapping 6 true assert_correct_incoming_content faulty-non-unique-mapping 6 true
assert_correct_incoming_content faulty-to-many-mapping-files 4 true assert_correct_incoming_content faulty-to-many-mapping-files 4 true
assert_correct_incoming_content faulty-unknow-property 4 true assert_correct_incoming_content faulty-unknown-property 4 true
assert_correct_incoming_content faulty-unknown-mapping 8 true assert_correct_incoming_content faulty-unknown-mapping 8 true
assert_correct_incoming_content faulty-wrong-conversion 6 true assert_correct_incoming_content faulty-wrong-conversion 6 true
assert_correct_incoming_content ignore-empty-dir 0 false assert_correct_incoming_content ignore-empty-dir 0 false
......
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