SSDM-3130, SSDM-3113: backporting from stage/13.04.x to trunk: r35649, r35651, r35657

...ce/java/ch/systemsx/cisd/common/filesystem/tar/Untar.java

...x/cisd/etlserver/postregistration/EagerShufflingTask.java

...ss/generic/server/plugins/standard/TarPackageManager.java

...erver/plugins/standard/archiver/MultiDataSetArchiver.java

.../standard/archiver/MultiDataSetFileOperationsManager.java

...plugins/standard/archiver/MultiDataSetPackageManager.java

...ss/bo/common/entity/ExperimentProjectSpaceCodeRecord.java

...siness/bo/common/entity/ISecondaryEntityListingQuery.java

.../server/business/bo/common/entity/SecondaryEntityDAO.java

...neric/server/business/bo/datasetlister/DatasetLister.java