LMS-1529 first draft of image database

SVN: 15919

screening/source/sql/postgresql/001/schema-001.sql

+
+/* ---------------------------------------------------------------------- */
+/* Domains                                                                */
+/* ---------------------------------------------------------------------- */
+
+CREATE DOMAIN TECH_ID AS BIGINT;
+
+CREATE DOMAIN CODE AS VARCHAR(40);
+
+CREATE DOMAIN NAME AS VARCHAR(80);
+
+CREATE DOMAIN DESCRIPTION AS VARCHAR(200);
+
+CREATE DOMAIN FILE_PATH as VARCHAR(1000);
+
+// TODO
+CREATE DOMAIN COLOR_COMPONENT AS (RED, GREEN, BLUE);
+
+/* ---------------------------------------------------------------------- */
+/* Tables                                                                 */
+/* ---------------------------------------------------------------------- */
+
+CREATE TABLE EXPERIMENTS (
+  ID BIGSERIAL NOT NULL,
+  PERM_ID CODE NOT NULL,
+
+  PRIMARY KEY (ID),
+  UNIQUE (PERM_ID)
+);
+
+CREATE TABLE CONTAINERS (
+  ID BIGSERIAL NOT NULL,
+  PERM_ID CODE NOT NULL,
+
+  SPOTS_WIDTH INTEGER,
+  SPOTS_HEIGHT INTEGER,
+  
+  EXPE_ID TECH_ID NOT NULL,
+
+  PRIMARY KEY (ID),
+  UNIQUE (PERM_ID),
+  CONSTRAINT FK_SAMPLE_1 FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+);
+
+CREATE TABLE SPOTS (
+  ID BIGSERIAL NOT NULL,
+  PERM_ID CODE NOT NULL,
+	
+	-- position in the container, one-based
+  X INTEGER, 
+  Y INTEGER, 
+  CONT_ID TECH_ID NOT NULL,
+  
+  PRIMARY KEY (ID),
+  UNIQUE (PERM_ID),
+  CONSTRAINT FK_SPOT_1 FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+  CONSTRAINT FK_SPOT_2 FOREIGN KEY (CONT_ID) REFERENCES CONTAINERS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+);
+
+
+CREATE TABLE DATA_SETS (
+  ID BIGSERIAL NOT NULL,
+  PERM_ID CODE NOT NULL,  
+  
+	FIELDS_WIDTH INTEGER,
+	FIELDS_HEIGHT INTEGER,	
+  
+  EXPE_ID TECH_ID NOT NULL,
+  SAMP_ID TECH_ID,
+
+  PRIMARY KEY (ID),
+  UNIQUE (PERM_ID),
+  CONSTRAINT FK_DATA_SET_1 FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS (ID) ON DELETE CASCADE ON UPDATE CASCADE,
+  CONSTRAINT FK_DATA_SET_2 FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES (ID) ON DELETE CASCADE ON UPDATE CASCADE
+);
+
+CREATE TABLE CHANNELS (
+    ID BIGSERIAL  NOT NULL,
+    
+    NAME NAME NOT NULL,
+    DESCRIPTION DESCRIPTION,
+    WAVELENGTH INTEGER,
+
+    DS_ID TECH_ID	NOT NULL,
+    
+    CONSTRAINT FK_CHANNELS_1 FOREIGN KEY (DS_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+);
+
+CREATE TABLE CHANNEL_STACKS (
+    ID BIGSERIAL  NOT NULL,
+		
+		-- x and y are kind of a two dimensional sequence number, some use case may only use x and leave y alone
+		X INTEGER,
+		Y INTEGER,
+		-- we use the fixed dimension meters here
+		Z_in_M FLOAT,
+		-- we use the fixed dimension seconds here
+		T_in_SEC FLOAT,
+
+    DS_ID TECH_ID	NOT NULL,
+		SPOT_ID TECH_ID	NOT NULL,
+
+    CONSTRAINT FK_CHANNEL_STACKS_1 FOREIGN KEY (SPOT_ID) REFERENCES SPOTS (ID) ON DELETE CASCADE ON UPDATE CASCADE		
+    CONSTRAINT FK_CHANNEL_STACKS_2 FOREIGN KEY (DS_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+);
+
+CREATE TABLE IMAGES (
+    ID BIGSERIAL  NOT NULL,
+   
+    PATH	FILE_PATH NOT NULL,
+    PAGE	INTEGER,
+    COLOR	COLOR_COMPONENT,
+    
+    CHANNEL_STACK_ID  TECH_ID NOT NULL,
+    CHANNEL_ID  TECH_ID NOT NULL,
+    DS_ID  TECH_ID NOT NULL,
+
+    CONSTRAINT FK_IMAGES_1 FOREIGN KEY (CHANNEL_STACK_ID) REFERENCES CHANNEL_STACKS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+    CONSTRAINT FK_IMAGES_2 FOREIGN KEY (CHANNEL_ID) REFERENCES CHANNELS (ID) ON DELETE CASCADE ON UPDATE CASCADE    
+    CONSTRAINT FK_IMAGES_3 FOREIGN KEY (DS_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE ON UPDATE CASCADE
+);
+
+/* ---------------------------------------------------------------------- */
+/* FEATURE VECTORS                                                        */
+/* ---------------------------------------------------------------------- */ 
+
+CREATE TABLE FEATURE_DEFS (
+    ID BIGSERIAL  NOT NULL,
+    // TODO
+);
+
+CREATE TABLE FEATURE_VALUES (
+    ID BIGSERIAL  NOT NULL,
+		// TODO
+);
+
+