sysname calculation script added

SVN: 35325

plasmid/source/core-plugins/weismigration/1/compatibility/sysname_calculation.py

+import re
+
+def calculate_sysname(): 
+	result = (len(re.findall("A|a|T|t", entity.propertyValue('SEQUENCE'))) * 100)/len(re.findall("A|a|C|c|G|g|T|t|U|u", entity.propertyValue('SEQUENCE')))	
+
+	type=entity.propertyValue('OLIGO_TYPE')
+	if type == "DNA":
+		type = "d"
+	else:
+		type ="r"
+
+	sense= entity.propertyValue('SENSE')
+	if sense == "SENSE":
+		sense = "s"
+	elif sense == "ANTISENSE":
+		sense ="a"
+
+	group =  entity.propertyValue('GROUP')
+
+
+	fromNuc =  entity.propertyValue('FROM_NUC')
+
+
+	toNuc=  entity.propertyValue('TONUC')
+	
+
+
+	result = type + "-" +sense +"-" +group + "-" + "[" +fromNuc +"-"+toNuc+"]"
+
+	return result
+     
+def calculate():
+	return calculate_sysname()
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