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sispub
openbis
Commits
086da4c2
Commit
086da4c2
authored
16 years ago
by
ribeaudc
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fix: - Integration tests.
SVN: 7953
parent
2289de6a
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integration-tests/run.sh
+8
-4
8 additions, 4 deletions
integration-tests/run.sh
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8 additions
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4 deletions
integration-tests/run.sh
+
8
−
4
View file @
086da4c2
...
...
@@ -596,7 +596,8 @@ function assert_correct_content_of_processing_dir {
assert_same_content
$TEST_DATA
/3VCP1
$data_set
assert_same_content
$TEMPLATE
/openBIS-client/testdata/register-experiments/processing-parameters.txt
\
$DATA
/processing-dir/processing-parameters-from-openbis
local
bds_container
=
$DATA
/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_3VCP1/
local
instance_dir
=
$DATA
/main-store/
`
ls
-1
$DATA
/main-store/ |
grep
-i
'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'
`
local
bds_container
=
$instance_dir
/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_3VCP1/
bds_container
=
$bds_container
`
ls
-1
$bds_container
|
head
-1
`
assert_dir_exists
$bds_container
local
data_set2
=
$bds_container
/data/original/microX_200801011213_3VCP1
...
...
@@ -608,7 +609,8 @@ function assert_correct_content_of_plate_3VCP1_in_store {
local
cell_plate
=
3VCP1
echo
====
assert correct content of plate 3VCP1
in
store
====
local
main_dir
=
$DATA
/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1
local
instance_dir
=
$DATA
/main-store/
`
ls
-1
$DATA
/main-store/ |
grep
-i
'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'
`
local
main_dir
=
$instance_dir
/Group_CISD/Project_NEMO/Experiment_EXP1
local
raw_data_dir
=
$main_dir
/ObservableType_HCS_IMAGE/Sample_3VCP1/
assert_dir_exists
$raw_data_dir
# Picks up the first directory found
...
...
@@ -696,14 +698,16 @@ function assert_correct_content_of_invalid_plate_in_store {
local
data_set
=
$error_dir
/microX_200801011213_
$cell_plate
assert_same_content
$TEST_DATA
/
$cell_plate
$data_set
assert_file_exists
$data_set
.exception
assert_dir_empty
$DATA
/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_
$cell_plate
local
instance_dir
=
$DATA
/main-store/
`
ls
-1
$DATA
/main-store/ |
grep
-i
'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'
`
assert_dir_empty
$instance_dir
/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_
$cell_plate
}
function
assert_correct_content_of_image_analysis_data
{
local
cell_plate
=
$1
echo
====
check image analysis data
for
cell plate
$cell_plate
====
local
img_analysis
=
$DATA
/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE_ANALYSIS_DATA/Sample_
$cell_plate
/
local
instance_dir
=
$DATA
/main-store/
`
ls
-1
$DATA
/main-store/ |
grep
-i
'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'
`
local
img_analysis
=
$instance_dir
/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE_ANALYSIS_DATA/Sample_
$cell_plate
/
assert_dir_exists
$img_analysis
# Picks up the first directory found
img_analysis
=
$img_analysis
`
ls
-1
$img_analysis
|
head
-1
`
...
...
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