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Commit 086da4c2 authored by ribeaudc's avatar ribeaudc
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fix: - Integration tests.

SVN: 7953
parent 2289de6a
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......@@ -596,7 +596,8 @@ function assert_correct_content_of_processing_dir {
assert_same_content $TEST_DATA/3VCP1 $data_set
assert_same_content $TEMPLATE/openBIS-client/testdata/register-experiments/processing-parameters.txt \
$DATA/processing-dir/processing-parameters-from-openbis
local bds_container=$DATA/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_3VCP1/
local instance_dir=$DATA/main-store/`ls -1 $DATA/main-store/ | grep -i 'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'`
local bds_container=$instance_dir/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_3VCP1/
bds_container=$bds_container`ls -1 $bds_container | head -1`
assert_dir_exists $bds_container
local data_set2=$bds_container/data/original/microX_200801011213_3VCP1
......@@ -608,7 +609,8 @@ function assert_correct_content_of_plate_3VCP1_in_store {
local cell_plate=3VCP1
echo ==== assert correct content of plate 3VCP1 in store ====
local main_dir=$DATA/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1
local instance_dir=$DATA/main-store/`ls -1 $DATA/main-store/ | grep -i 'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'`
local main_dir=$instance_dir/Group_CISD/Project_NEMO/Experiment_EXP1
local raw_data_dir=$main_dir/ObservableType_HCS_IMAGE/Sample_3VCP1/
assert_dir_exists $raw_data_dir
# Picks up the first directory found
......@@ -696,14 +698,16 @@ function assert_correct_content_of_invalid_plate_in_store {
local data_set=$error_dir/microX_200801011213_$cell_plate
assert_same_content $TEST_DATA/$cell_plate $data_set
assert_file_exists $data_set.exception
assert_dir_empty $DATA/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_$cell_plate
local instance_dir=$DATA/main-store/`ls -1 $DATA/main-store/ | grep -i 'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'`
assert_dir_empty $instance_dir/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE/Sample_$cell_plate
}
function assert_correct_content_of_image_analysis_data {
local cell_plate=$1
echo ==== check image analysis data for cell plate $cell_plate ====
local img_analysis=$DATA/main-store/Instance_CISD/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE_ANALYSIS_DATA/Sample_$cell_plate/
local instance_dir=$DATA/main-store/`ls -1 $DATA/main-store/ | grep -i 'Instance_[0-9a-f]\{8\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{4\}-[0-9a-f]\{12\}'`
local img_analysis=$instance_dir/Group_CISD/Project_NEMO/Experiment_EXP1/ObservableType_HCS_IMAGE_ANALYSIS_DATA/Sample_$cell_plate/
assert_dir_exists $img_analysis
# Picks up the first directory found
img_analysis=$img_analysis`ls -1 $img_analysis | head -1`
......
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