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# author: Tomasz Pylak, 2007-09-27
# Integration tests functions
# ----------------------------- global constants
TRUE=1
FALSE=0
# all paths are relative to the template directory
TEMPLATE=templates
TARGETS=targets
WORK=$TARGETS/playground
INSTALL=$TARGETS/install
LOCAL_PROJECTS=..
OPENBIS_SERVER=$WORK/openBIS-server
SSH_CRUISE_CONTROL_NAME=ci@cisd-vesuvio.ethz.ch
CRUISE_CONTROL_ARTIFACTS=cruisecontrol-bin/artifacts
# ----------------------------- global state
TEST_FAILED=false # working variable, if true then some tests failed
# ----------------------------- assertions to check the tests results
function init_log {
rm -fr $ERR_LOG
}
function report_error {
local msg=$@
echo [ERROR] $msg | tee -a $ERR_LOG >&2
TEST_FAILED="true"
}
function exit_if_assertion_failed {
if [ "$TEST_FAILED" = "true" ]; then
fi
}
function assert_file_exists {
local file=$1
if [ ! -f "$file" ]; then
fi
}
function assert_file_not_exists {
local file=$1
if [ -f "$file" ]; then
report_error File $file does exist although it should not!
fi
}
function assert_same_inode {
local file1=$1
local file2=$2
if [ $file1 -ef $file2 ]; then
echo [OK] $file1 and $file2 have the same inode number.
else
report_error "$file1 and $file2 do not have the same inode number."
fi
}
function assert_dir_exists {
local DIR=$1
if [ ! -d "$DIR" ]; then
fi
}
function fatal_error {
local MSG=$@
report_error $MSG
exit_if_assertion_failed
}
# remember to pass the parameter in quote marks
function assert_file_exists_or_die {
local F="$1"
local files_num=`ls -1 $F 2> /dev/null | wc -l`
if [ $files_num -gt 1 ]; then
fatal_error "One file expected for pattern $F, but more found: " $F
if [ ! -f $F ]; then
fatal_error "No file matching pattern $F exists"
fi
fi
}
function assert_dir_exists_or_die {
local DIR=$1
if [ ! -d $DIR ]; then
fi
}
function assert_dir_empty {
dir=$1
is_empty_dir $dir
empty=$?
if [ $empty == 0 ]; then
report_error Directory \'$dir\' should be empty!
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fi
}
function assert_same_content {
local expected_file=$1
local actual_file=$2
cmd="diff --exclude=\.svn -r $expected_file $actual_file"
supress=`eval $cmd`
is_different=$?
if [ $is_different == 1 ]; then
report_error "Different content in $expected_file (marked by '<') and $actual_file (marked by '>')"
eval $cmd
else
echo "[OK] Same content in $expected_file and $actual_file"
fi
}
function assert_equals {
local message=$1
local expected_text=$2
local actual_text=$3
if [ "$expected_text" != "$actual_text" ]; then
report_error "$message: expected: <$expected_text> but was: <$actual_text>"
fi
}
function assert_equals_as_in_file {
local expected_text=$1
local file_with_actual_text=$2
assert_file_exists $file_with_actual_text
assert_equals "Content of file $file_with_actual_text" "$expected_text" "`cat $file_with_actual_text`"
}
function assert_pattern_present {
local file=$1
local occurences=$2
local pattern=$3
assert_file_exists $file
echo Matched lines:
cat $file | grep "$pattern"
local lines=`cat $file | grep "$pattern" | wc -l`
if [ $lines != $occurences ]; then
report_error $lines instead of $occurences occurences of pattern $pattern found!
echo [OK] $occurences occurences of pattern $pattern found
fi
}
function assert_files_number {
local dir=$1
local expected_files_count=$2
local files_count=`ls -1 $dir | wc -l`
assert_equals "Wrong number of files in $dir directory" $expected_files_count $files_count
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}
# -----------------------------
# Scripts to build and install components needed in integration tests.
#
# Implementation assumptions:
# - the current directory after calling a function does not change
# -----------------------------
# ----------------------------- configuration
BIN_PATHS="/opt/local/bin /usr/bin /usr/sbin"
USER=`whoami`
DATABASE=openbis_integration_test
# --------------------------- build distributions from sources
# Replaces the ':' in $PATH with ' '.
function get_env_path {
echo $PATH | tr ":" " "
}
# Looks for a specified executable in environment paths and
# paths given as a parameter (space separated).
function locate_file {
local file=$1
shift
local additional_paths=$@
for dir in `get_env_path` $additional_paths; do
local full_path=$dir/$file
if [ -x $full_path ]; then
echo $full_path;
return
fi
done
}
function run_svn {
`locate_file svn $BIN_PATHS` $@
}
function run_lsof {
`locate_file lsof $BIN_PATHS` $@
}
# Tries to find PostgreSQL executable and returns its absolute path.
# If not found, then exits the script with an appropriate error message.
function run_psql {
for prg in psql psql84 psql83; do
exe=`locate_file $prg $BIN_PATHS`
if [ $exe ]; then
echo $exe
return
fi
done
echo "Cannot find PostgreSQL"
echo "This executable is needed to run the integration tests"
exit 1
}
function build_zips {
build_dss=$1
build_dmv=$2
build_openbis=$3
use_local_source=$4
if [ $build_dss == "true" -o $build_dmv == "true" -o $build_openbis == "true" ]; then
mkdir -p $INSTALL
if [ "$use_local_source" = "true" ]; then
build_zips_from_local $build_dss $build_dmv $build_openbis
else
build_zips_from_svn $build_dss $build_dmv $build_openbis
fi
echo "No components to build were specified (--help explains how to do this)."
echo "Build process skipped."
fi
assert_file_exists_or_die "$INSTALL/openBIS*.zip"
assert_file_exists_or_die "$INSTALL/datastore_server-*.zip"
assert_file_exists_or_die "$INSTALL/datastore_server_plugin-yeastx-*.zip"
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assert_file_exists_or_die "$INSTALL/datamover*.zip"
}
function build_zips_from_local {
build_dss=$1
build_dmv=$2
build_openbis=$3
build_components build_local $build_dss $build_dmv $build_openbis
}
function build_local {
local PROJECT_NAME=$1
$LOCAL_PROJECTS/$PROJECT_NAME/build/antrun.sh
local dir=$LOCAL_PROJECTS/$PROJECT_NAME/targets/dist/
mv $dir/*.zip $INSTALL
}
function build_components {
build_cmd=$1
build_dss=$2
build_dmv=$3
build_openbis=$4
if [ $build_dss == "true" ]; then
rm -f $INSTALL/datastore_server*.zip
rm -f $INSTALL/dss_client*.zip
$build_cmd datastore_server
$build_cmd rtd_yeastx
fi
if [ $build_dmv == "true" ]; then
rm -f $INSTALL/datamover*.zip
$build_cmd datamover
fi
if [ $build_openbis == "true" ]; then
$build_cmd openbis
fi
}
function build_remote {
local RSC=$1
local PROJECT_NAME=$2
cd $RSC
./build.sh --private $PROJECT_NAME
cd ..
}
function build_zips_from_svn {
build_dss=$1
build_dmv=$2
build_openbis=$3
RSC=build_resources
rm -fr $RSC
run_svn checkout svn+ssh://svncisd.ethz.ch/repos/cisd/build_resources/trunk $RSC
build_components "build_remote $RSC" $build_dss $build_dmv $build_openbis
mv $RSC/*.zip $INSTALL
rm -fr $RSC
}
function fetch_latest_artifacts_from_cruise_control {
local proj_name=$1
local dest_dir=$2
local list_cmd="ls -1 $CRUISE_CONTROL_ARTIFACTS/$proj_name | sort | tail -1"
local last=`echo $list_cmd | ssh $SSH_CRUISE_CONTROL_NAME -T`
echo "Fetching artifacts for $proj_name: $last"
scp $SSH_CRUISE_CONTROL_NAME:$CRUISE_CONTROL_ARTIFACTS/$proj_name/$last/*.zip $dest_dir
}
# -------------------------- installation
# Recursively removes '.svn' directory in passed directory.
function clean_svn {
local DIR=$1
for file in `find $DIR -name ".svn"`; do
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done
}
function copy_templates {
local template_dir=$1
cp -fR $TEMPLATE/$template_dir $WORK
clean_svn $WORK/$template_dir
}
function prepare {
src=$1
dest=$2
rm -fr $WORK/$dest
cp -R $WORK/$src $WORK/$dest
copy_templates $dest
}
function unpack { # from ZIPS to BUILD
local file_pattern=$1
unzip -d $WORK $INSTALL/$file_pattern*.zip
}
function remove_unpacked {
rm -fR $WORK/$1
}
function check_server_port {
run_lsof -i -n -P | grep 8443
}
function wait_for_server {
echo -n "Server starting"
i=0;
while [ "`check_server_port`" == "" -a $i -lt 20 ]; do
done
if [ "`check_server_port`" == "" ]; then
report_error "Server could not be started!"
exit 1
function restore_database {
local db_name=$1
local db_file_path=$2
$psql_cmd -U postgres -c "drop database $db_name"
$psql_cmd -U postgres -c "create database $db_name with owner $USER template = template0 encoding = 'UNICODE'"
$psql_cmd -U $USER -d $db_name -f $db_file_path
}
#
# Installs openbis server in the specified directory.
# Copies templates from the directory with the same name in $TEMPLATE diretcory.
#
function install_openbis_server {
local install_openbis=$1
local openbis_server_dir=$2
local openbis_server_name=`basename $openbis_server_dir`
restore_database $DATABASE $TEMPLATE/$openbis_server_name/test_database.sql
if [ $install_openbis == "true" ]; then
rm -fr $openbis_server_dir
copy_templates $openbis_server_name
unzip -d $openbis_server_dir $INSTALL/openBIS*.zip
$openbis_server_dir/openBIS-server/install.sh $PWD/$openbis_server_dir $openbis_server_dir/service.properties $openbis_server_dir/openbis.conf
startup_openbis_server $openbis_server_dir
wait_for_server
copy_templates $openbis_server_name
restart_openbis $openbis_server_dir
fi
}
function startup_openbis_server {
local openbis_server_dir=$1
call_in_dir bin/startup.sh $openbis_server_dir/jetty
wait_for_server
}
function shutdown_openbis_server {
local openbis_server_dir=$1
if [ "`check_server_port`" != "" ]; then
$openbis_server_dir/jetty/bin/shutdown.sh
# unpack everything, override default configuration with test configuation
function install_dsss {
local install_dss=$1
local dss_dirs="datastore_server1 datastore_server2 datastore_server_yeastx"
if [ $install_dss == "true" ]; then
for dss_dir in $dss_dirs; do
prepare datastore_server $dss_dir
done
remove_unpacked datastore_server
for dss_dir in $dss_dirs; do
copy_templates $dss_dir
done
fi
}
function install_datamovers {
local install_dmv=$1
if [ $install_dmv == "true" ]; then
unpack datamover
prepare datamover datamover-raw
prepare datamover datamover-analysis
remove_unpacked datamover
cp -fR $TEMPLATE/dummy-img-analyser $WORK
copy_templates datamover-raw
copy_templates datamover-analysis
copy_templates datamover-raw
copy_templates datamover-analysis
fi
}
function restart_openbis {
local openbis_server_dir=$1
assert_dir_exists_or_die $openbis_server_dir
if [ "`check_server_port`" != "" ]; then
# maybe server is just closing, wait a moment
sleep 5
fi
if [ "`check_server_port`" != "" ]; then
echo Shutting down openbis server.
shutdown_openbis_server $openbis_server_dir
sleep 1
fi
startup_openbis_server $openbis_server_dir
sleep 4
}
function install {
local install_dss=$1
local install_dmv=$2
local install_openbis=$3
local reinstall_all=$4
mkdir -p $WORK
if [ $reinstall_all == "true" ];then
install_dsss "true"
install_datamovers "true"
install_openbis_server "true" $OPENBIS_SERVER
install_dsss $install_dss
install_datamovers $install_dmv
install_openbis_server $install_openbis $OPENBIS_SERVER
fi
}
# ----------------------------- general
# calls $cmd script, changing directory to $dir
function call_in_dir {
cmd=$1
dir=$2
prev=$PWD
cd $dir
sh $cmd
cd $prev
}
function is_empty_dir {
dir=$1
if [ "`ls $dir`" = "" ]; then
fi
}
# ----------------------- Launching
function chmod_exec {
for file in $@; do
if [ -f $file ]; then
done
}
function switch_sth {
switch_on=$1 # on/off
dir=$WORK/$2
cmd_start=$3
cmd_stop=$4
report_error=$5
assert_dir_exists_or_die $dir
chmod_exec $dir/$cmd_start
chmod_exec $dir/$cmd_stop
if [ "$switch_on" == "on" ]; then
echo "Launching $dir..."
rm -fr $dir/log/*
call_in_dir "$cmd_start" $dir
echo "Stopping $dir, displaying errors from the log"
if [ "`cat $dir/log/* | grep ERROR | tee -a $ERR_LOG`" != "" ]; then
if [ $report_error -eq $TRUE ]; then
report_error $dir reported errors.
cat $dir/log/* | grep ERROR >&2
fi
fi
call_in_dir "$cmd_stop" $dir
fi
}
function switch_dss {
switch_sth $1 $2 "datastore_server.sh start" "datastore_server.sh stop" $FALSE
}
function switch_dmv {
switch_sth $1 $2 "datamover.sh start" "datamover.sh stop" $TRUE
}
function assert_correct_dataset_content_in_database {
local dataset_id=$1
local pattern=$2
echo ==== assert correct dataset $dataset_id content in database with pattern $pattern ====
local psql=`run_psql`
local dataset=`$psql -U postgres -d $DATABASE \
-c "select d.id, e.code, ds.code, d.code, d.is_placeholder, r.data_id_parent, \
ed.is_complete, d.data_producer_code, d.production_timestamp \
from data as d left join data_set_relationships as r on r.data_id_child = d.id \
left join data_stores as ds on ds.id = d.dast_id \
left join external_data as ed on ed.data_id = d.id,
experiments as e
where d.id = $dataset_id and d.expe_id = e.id" \
| awk '/ +[0-9]+/' \
| awk '{gsub(/ /,"");print}' \
| awk '{gsub(/\|/,";");print}'`
local lines=`echo "$dataset" | grep "$pattern" | wc -l`
if [ $lines == 0 ]; then
report_error dataset does not match pattern $pattern: $dataset
fi
}
function assert_dss_registration {
local dss=$1
echo ==== assert registration of DSS $dss ====
assert_pattern_present $WORK/$dss/log/datastore_server_log.txt 1 getVersion
}
function build_and_install {
install_dss=$1
install_dmv=$2
install_openbis=$3
use_local_source=$4
reinstall_all=$5
init_log
# NOTE: Comment this line if you want to use different libraries.
build_zips $install_dss $install_dmv $install_openbis $use_local_source