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# This code is ment to be common for all screening integration tests,
# but for now only biozentrum integration tests are using it.
function install_and_run_openbis_server_screening {
local install_openbis=$1
local local_template_dir=$2
local openbis_server_dir=$OPENBIS_SERVER_HCS
local openbis_server_name=`basename $openbis_server_dir`
restore_database $OPENBIS_DATABASE_HCS $local_template_dir/$openbis_server_name/test_database.sql
if [ $install_openbis == "true" ]; then
rm -fr $openbis_server_dir
unzip -q -d $openbis_server_dir $INSTALL/openBIS*.zip
mv $openbis_server_dir/openBIS-server/* $openbis_server_dir
rmdir $openbis_server_dir/openBIS-server
cp -v $local_template_dir/$openbis_server_name/service.properties $openbis_server_dir/service.properties
$openbis_server_dir/install.sh $PWD/$openbis_server_dir
startup_openbis_server $openbis_server_dir
else
restart_openbis $openbis_server_dir
wait_for_server
fi
}
function install_dss_screening {
local local_template_dir=$1
local dss_dest=$DSS_SERVER_HCS
local dss_template=$local_template_dir/$DSS_DIR_NAME
rm -fr $dss_dest
unzip -q $INSTALL/datastore_server-screening*.zip -d $dss_dest
mv $dss_dest/datastore_server/* $dss_dest
rmdir $dss_dest/datastore_server
# override default DSS configuration
cp -v $dss_template/etc/* $dss_dest/etc
}
# installs AS and DSS and starts AS
function install_screening {
local local_template=$1
# FIXME uncomment !!!!!!!!!!!!!!!!!!!!
#rm -fr $INSTALL
#fetch_distributions datastore_server
#fetch_distributions screening
echo Dropping imaging database: $IMAGING_DB
psql_cmd=`run_psql`
$psql_cmd -U postgres -c "drop database if exists $IMAGING_DB"
rm -fr $WORK
mkdir -p $WORK
install_dss_screening $local_template
install_and_run_openbis_server_screening "true" $local_template
}
function assertFeatureVectorDef {
local psql=`run_psql`
local result=`$psql -t -U postgres -d $IMAGING_DB \
-c "select label from feature_defs where code = '$1'" \
| awk '{gsub(/\|/,";");print}'`
echo "Checking feature $1"
assert_equals "Feature code and label" " $2" "$result"
}
# returns 0 on success, 1 otherwise
function wait_for_file {
local file_name=$1
local timeout=40
local total_time=0
local check_interval=5
echo -n Waiting for creation of $file_name
while [ ! -e $file_name ]; do
echo -n .
sleep $check_interval
total_time=$(( $total_time + $check_interval ))
if [ $total_time -gt $timeout ]; then
report_error "File $file_name has not been detected after $timeout sec [Error]"
return 1
fi
done
echo " [OK]"
return 0
}