pybis demo.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Working with pybis"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## connect to openBIS\n",
    "(using stored session token ~/.pybis/localhost.token)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'vermeul-170105170439098x34CD40C052CDA7A12E34AFFDB14FB134'"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from pybis import Openbis\n",
    "o = Openbis(url='https://localhost:8443', verify_certificates=False)\n",
    "o.token"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "True"
      ]
     },
     "execution_count": 26,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "o.is_session_active()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Manually connect to an instance using your username/password and storing the token for later use"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "········\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "'vermeul-170105170439098x34CD40C052CDA7A12E34AFFDB14FB134'"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from pybis import Openbis\n",
    "o = Openbis('https://localhost:8443', verify_certificates=False)\n",
    "\n",
    "import getpass\n",
    "password = getpass.getpass()\n",
    "\n",
    "o.login('vermeul',password, save_token=True)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "you can connect to another openBIS instance if you have to:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "········\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "'vermeul-161213095820805x4BD32D0691A016963A62966F872D0D65'"
      ]
     },
     "execution_count": 27,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from pybis import Openbis\n",
    "import getpass\n",
    "o2 = Openbis('https://sprint-openbis.ethz.ch:8443', verify_certificates=False)\n",
    "password = getpass.getpass()\n",
    "o2.login('vermeul',password)\n",
    "o2.token"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Check wether our session is still valid"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "True"
      ]
     },
     "execution_count": 28,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "o2.is_session_active()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "o2.logout()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## get general information about openBIS"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false
   },
   "outputs": [