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  • Welcome to pyBIS!
    =================
    
    pyBIS is a Python module for interacting with openBIS, designed to be
    used in Jupyter. It offers a sort of IDE for openBIS, supporting TAB
    completition and input checks, making the life of a researcher hopefully
    easier.
    
    
    Adam Laskowski's avatar
    Adam Laskowski committed
    `PyBIS Documentation <src/python/README.md>`__
    
    
    Requirements and organization
    =============================
    
    Dependencies and Requirements
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    
    -  pyBIS relies the openBIS API v3; openBIS version 16.05.2 or newer
    -  pyBIS uses Python 3.3 and pandas
    
    Installation
    ~~~~~~~~~~~~
    
    -  locate the ``jupyter-api`` folder found in ``pybis/src/coreplugins``
    -  copy this folder to ``openbis/servers/core-plugins`` in your openBIS
       installation
    -  register the plugin by editing
       ``openbis/servers/core-plugins/core-plugins.properties`` :
    -  ``enabled-modules = jupyter-api`` (separate multiple plugins with
       comma)
    -  restart your DSS to activate the plugin