pybis.py

        if data is not None:
            self.a(data)
            self.__dict__['data'] = data

        if kwargs is not None:
            for key in kwargs:
                setattr(self, key, kwargs[key])

    def _modifiable_attrs(self):
        return

    def __dir__(self):
        """all the available methods and attributes that should be displayed
        when using the autocompletion feature (TAB) in Jupyter
        """
        return ['code', 'permId', 'identifier', 'description', 'space', 'registrator',
                'registrationDate', 'modifier', 'modificationDate', 'add_attachment()',
                'get_attachments()', 'download_attachments()',
                'get_experiments()', 'get_samples()', 'get_datasets()',
                'save()', 'delete()'
                ]

    def get_samples(self, **kwargs):
        return self.openbis.get_samples(project=self.permId, **kwargs)

    def get_sample(self, sample_code):
        if is_identifier(sample_code) or is_permid(sample_code):
            return self.openbis.get_sample(sample_code)
        else:
            # we assume we just got the code
            return self.openbis.get_sample(project=self, code=sample_code)

    get_objects = get_samples # Alias

    def get_experiments(self):
        return self.openbis.get_experiments(project=self.permId)

    def get_datasets(self):
        return self.openbis.get_datasets(project=self.permId)

    def delete(self, reason):
        self.openbis.delete_entity(entity='Project', id=self.permId, reason=reason)
        if VERBOSE: print("Project {} successfully deleted.".format(self.permId))

    def save(self):
        if self.is_new:
            request = self._new_attrs()
            resp = self.openbis._post_request(self.openbis.as_v3, request)
            if VERBOSE: print("Project successfully created.")
            new_project_data = self.openbis.get_project(resp[0]['permId'], only_data=True)
            self._set_data(new_project_data)
            return self
        else:
            request = self._up_attrs()
            self.openbis._post_request(self.openbis.as_v3, request)
            if VERBOSE: print("Project successfully updated.")


class SemanticAnnotation():
    def __init__(self, openbis_obj, isNew=True, **kwargs):
        self._openbis = openbis_obj
        self._isNew = isNew;
        
        self.permId = kwargs.get('permId')
        self.entityType = kwargs.get('entityType')
        self.propertyType = kwargs.get('propertyType')
        self.predicateOntologyId = kwargs.get('predicateOntologyId')
        self.predicateOntologyVersion = kwargs.get('predicateOntologyVersion')
        self.predicateAccessionId = kwargs.get('predicateAccessionId')
        self.descriptorOntologyId = kwargs.get('descriptorOntologyId')
        self.descriptorOntologyVersion = kwargs.get('descriptorOntologyVersion')
        self.descriptorAccessionId = kwargs.get('descriptorAccessionId')
        self.creationDate = kwargs.get('creationDate')

    def __dir__(self):
        return [
            'permId', 'entityType', 'propertyType', 
            'predicateOntologyId', 'predicateOntologyVersion', 
            'predicateAccessionId', 'descriptorOntologyId',
            'descriptorOntologyVersion', 'descriptorAccessionId', 
            'creationDate', 
            'save()', 'delete()' 
        ]

    def save(self):
        if self._isNew:
            self._create()
        else:
            self._update()
            
    def _create(self):
        
        creation = {
            "@type": "as.dto.semanticannotation.create.SemanticAnnotationCreation"
        }

        if self.entityType is not None and self.propertyType is not None:
            creation["propertyAssignmentId"] = {
                "@type": "as.dto.property.id.PropertyAssignmentPermId",
                "entityTypeId" : {
                    "@type": "as.dto.entitytype.id.EntityTypePermId",
                    "permId" : self.entityType,
                    "entityKind" : "SAMPLE"
                },
                "propertyTypeId" : {
                    "@type" : "as.dto.property.id.PropertyTypePermId",
                    "permId" : self.propertyType
                }
            }
        elif self.entityType is not None:
            creation["entityTypeId"] = {
                "@type": "as.dto.entitytype.id.EntityTypePermId",
                "permId" : self.entityType,
                "entityKind" : "SAMPLE"
            }
        elif self.propertyType is not None:
            creation["propertyTypeId"] = {
                "@type" : "as.dto.property.id.PropertyTypePermId",
                "permId" : self.propertyType
            }
            
        for attr in ['predicateOntologyId', 'predicateOntologyVersion', 'predicateAccessionId', 'descriptorOntologyId', 'descriptorOntologyVersion', 'descriptorAccessionId']:
            creation[attr] = getattr(self, attr)

        request = {
            "method": "createSemanticAnnotations",
            "params": [
                self._openbis.token,
                [creation]
            ]
        }
        
        self._openbis._post_request(self._openbis.as_v3, request)
        self._isNew = False
        
        if VERBOSE: print("Semantic annotation successfully created.")
    
    def _update(self):
        
        update = {
            "@type": "as.dto.semanticannotation.update.SemanticAnnotationUpdate",
            "semanticAnnotationId" : {
                "@type" : "as.dto.semanticannotation.id.SemanticAnnotationPermId",
                "permId" : self.permId
            }
        }
        
        for attr in ['predicateOntologyId', 'predicateOntologyVersion', 'predicateAccessionId', 'descriptorOntologyId', 'descriptorOntologyVersion', 'descriptorAccessionId']:
            update[attr] = {
                "@type" : "as.dto.common.update.FieldUpdateValue",
                "isModified" : True,
                "value" : getattr(self, attr)
            }
            
        request = {
            "method": "updateSemanticAnnotations",
            "params": [
                self._openbis.token,
                [update]
            ]
        }
        
        self._openbis._post_request(self._openbis.as_v3, request)
        if VERBOSE: print("Semantic annotation successfully updated.")
    
    def delete(self, reason):
        self._openbis.delete_entity(entity='SemanticAnnotation', id=self.permId, reason=reason)
        if VERBOSE: print("Semantic annotation successfully deleted.")