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import json
import random
import re
import pytest
import time
from pybis import DataSet
from pybis import Openbis
def test_create_delete_sample(space):
o=space.openbis
sample_type = 'UNKNOWN'
sample = o.new_sample(code='illegal sample name with spaces', type=sample_type, space=space)
with pytest.raises(ValueError):
sample.save()
assert "should not have been created" is None
timestamp = time.strftime('%a_%y%m%d_%H%M%S').upper()
sample_code = 'test_sample_'+timestamp
sample = o.new_sample(code=sample_code, type=sample_type, space=space)
assert sample is not None
assert sample.space == space
assert sample.code == sample_code
assert sample.permId is None
sample.save()
# now there should appear a permId
assert sample.permId is not None
# get it by permId
sample_by_permId = o.get_sample(sample.permId)
assert sample_by_permId is not None
sample_by_permId = space.get_sample(sample.permId)
assert sample_by_permId is not None
# get it by identifier
sample_by_identifier = o.get_sample(sample.identifier)
assert sample_by_identifier is not None
sample_by_identifier = space.get_sample(sample.identifier)
assert sample_by_identifier is not None
sample.delete('sample creation test on '+timestamp)
def test_parent_child(space):
o=space.openbis
sample_type = 'UNKNOWN'
timestamp = time.strftime('%a_%y%m%d_%H%M%S').upper()
parent_code = 'parent_sample_{}'.format(timestamp)
sample_parent = o.new_sample(code=parent_code, type=sample_type, space=space)
sample_parent.save()
child_code='child_sample_{}'.format(timestamp)
sample_child = o.new_sample(code=child_code, type=sample_type, space=space, parent=sample_parent)
sample_child.save()
time.sleep(5)
ex_sample_parents = sample_child.get_parents()
ex_sample_parent = ex_sample_parents[0]
assert ex_sample_parent.identifier == '/DEFAULT/{}'.format(parent_code).upper()
ex_sample_children = ex_sample_parent.get_children()
ex_sample_child = ex_sample_children[0]
assert ex_sample_child.identifier == '/DEFAULT/{}'.format(child_code).upper()