... | ... | @@ -25,15 +25,19 @@ This section provides instructions for a local installation of SIMA on a Windows |
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### SIMA Installation
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1. Open Anaconda navigator and select the Environments tab. Create a new environment called *sima_env*.
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2. Install the following packages into the environment: scipy, numpy, matplotlib, jupyter
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3. Open the Anaconda command prompt, change to the repository folder and activate the environment: `activate sima_env`
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4. Next, we need to install some packages with the Python package manager pip. Some packages can be downloaded directly while others need to be installed from a wheel file, located in the install folder of the repository. Alternatively, the wheel files can be obtained from http://www.lfd.uci.edu/~gohlke/pythonlibs/
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5. Install Shapely from file: `python -m pip install install\Shapely-1.5.17-cp27-cp27m-win_amd64.whl`
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6. Install SIMA: `pip install sima`
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7. Now you can launch the notebook server by typing `jupyter notebook`
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3. Open the Anaconda command prompt
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4. Change to the repository folder, e.g.: `pushd E:\Data\Projects\SIMA-notebooks`
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5. Activate the environment: `activate sima_env`
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Next, we need to install some packages with the Python package manager pip. Some packages can be downloaded directly while others need to be installed from a wheel file, located in the install folder of the repository. Alternatively, the wheel files can be obtained from http://www.lfd.uci.edu/~gohlke/pythonlibs/
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6. Install Shapely from file: `python -m pip install install\Shapely-1.5.17-cp27-cp27m-win_amd64.whl`
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7. Install SIMA: `pip install sima`
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8. Now you can launch the notebook server by typing `jupyter notebook`
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### Installation of roibuddy
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For details, see http://www.losonczylab.org/sima/1.3.2/roi_buddy.html#windows. Note that Microsoft Visual C++ 9.0 is required (see Prerequisites).
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1.
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1. Install PyQt4 and PythonQwt from wheels:
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## Running the notebooks
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