Explore projects

This project aims to collect (and possibly implement) ideas how the Renku platform (for analysis workflow and collaboration) and openBIS (data store and management) can be optimised for better interoperability.

Demo of Jupyter notebook for ETH ARDM workshops

PyBIS is a Python3 module to interact with openBIS. This repository contains various Jupyter notebooks that demonstrate the usage of the Python pyBIS module.

Jupyter notebooks for SIS "Scientific Python" training

Demo of Jupyter notebook for ETH ARDM workshops

Jupyter notebooks for "Introduction to Programming with Python"

Repository of Jupyter notebooks for calcium imaging data analysis with the SIMA image analysis package. These notebooks were developed as part of an eSCT project in collaboration with the group of Shankar Sachidhanandam (University of Bern).