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This repository contains the components necessary to integrate a JupyterHub installation with openBIS.

The server part of the jupyter-openbis-extension and jupyterlab-openbis notebook extension. Uses pyBIS internally to communicate with openBIS. Communicates with the notebook extensions via the tornado webserver.

Fork of https://bitbucket.org/tanakas/lbibcell.git

Extension of https://github.com/lh3/misc/blob/master/math/lsoda.c

Code used to generate results for the publication "Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting"

UniversitätSpital Zürich pipeline (Phil Cheng & Mitch Levesque)

Bridges R to Python.

Project handed over to Machine Learning & Computational Biology Lab, D-BSSE; further development continued at: https://github.com/BorgwardtLab/CAsMap .

Repository of Jupyter notebooks for calcium imaging data analysis with the SIMA image analysis package. These notebooks were developed as part of an eSCT project in collaboration with the group of Shankar Sachidhanandam (University of Bern).