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UniversitätSpital Zürich pipeline (Phil Cheng & Mitch Levesque)
PyBIS is a Python3 module to interact with openBIS. This repository contains various Jupyter notebooks that demonstrate the usage of the Python pyBIS module.
This repository contains the components necessary to integrate a JupyterHub installation with openBIS.
GNU Lesser General Public License v3.0
Access data managed with openBIS directly from Matlab. Uses Pybis and Matlab's capability to call Python libraries.
Repository of Jupyter notebooks for calcium imaging data analysis with the SIMA image analysis package. These notebooks were developed as part of an eSCT project in collaboration with the group of Shankar Sachidhanandam (University of Bern).
Material for the containers & pipelines tutorials
small code snippet for IAM automation:
create LDAP groups and IAM personas
takes json file as input
monitor and process incoming location for data transfer from other biomedIT nodes