openBIS Data Modelling ====================== # Overview openBIS has the following data structure: 1. **Space**: entity with *Code and *Description** 2. **Project**: entity with *Code* and *Description* 3. **Experiment/Collection:** entity with *user-defined properties* 4. **Object**: entity with *user-defined properties* 5. **Dataset**: folder where data files are stored. A dataset has *user-defined properties*  *Space* is the top level. Below *Spaces* there are *Projects* and below *Projects* there are *Experiments/Collections*. In the general openBIS data model, *Objects* can: - be shared across *Spaces* (i.e. they do not belong to any Space) - belong to a *Space* - belong to a *Project* - belong to an *Experiment/Collection* *Datasets* can be associated only to *Experiments/Collections* or to *Objects*. Access to openBIS is controlled at the *Space* level, *Project* level or openBIS instance level (see [openBIS roles ](../general-admin-users/admins-documentation/user-registration.md#openbis-roles)). ## Data model in openBIS ELN-LIMS ------------------------------- In the openBIS ELN-LIMS a simplified data model is used, as shown below. . In this case, *Objects* can only belong to *Experiments/Collections*. ## Inventory The inventory is usually conceived to be shared by all lab members. The inventory is used to store all materials and protocols (i.e. standard operating procedures) used in the lab. It is possible to create additional inventories, for example of instruments and equipment. The picture below shows an example of an Inventory with the different openBIS levels.  ## Lab Notebook By default, the lab notebook is organised per user. Each user has a personal folder (=*Space*), where to create *Projects*, *Experiments* and Experimental Steps (=*Objects*). Data files can be uploaded to *Datasets*. Example structure:  Some labs prefer to organise their lab notebook using an organization per project rather than per user. In this case an openBIS *Space* would correspond to a lab Project and an openBIS *Project* could be a sub-project or a user folder (one folder per user working on the same project). # openBIS parents and children ---------------------------- *Objects* can be linked to other *Objects*, *Datasets* to other *Datasets* with N:N relationship. In openBIS these connections are known as *parents* and *children*.  ## Examples of parent-child relationships 1. One or more samples are derived from one main sample. This is the parent of the other samples:  2. One Experimental step is performed following a protocol stored in the inventory, on a sample stored in the inventory, using a given equipment. The protocol, the sample and the equipment are the parents of the Experimental step  3. One Experimental Step is done after another and we want to keep track of the links between the steps: 