diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/server/dataaccess/db/PhosphoNetXDAOFactory.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/server/dataaccess/db/PhosphoNetXDAOFactory.java index cfa2c44cfca815032650a599f3b8652b8834a397..10f7fc1b068ca8b8ab5759526e569ee78eacdecd 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/server/dataaccess/db/PhosphoNetXDAOFactory.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/server/dataaccess/db/PhosphoNetXDAOFactory.java @@ -38,7 +38,7 @@ import ch.systemsx.cisd.openbis.plugin.phosphonetx.server.dataaccess.IProteinQue public class PhosphoNetXDAOFactory implements IPhosphoNetXDAOFactory { /** Current version of the database. */ - public static final String DATABASE_VERSION = "001"; + public static final String DATABASE_VERSION = "002"; private static final Logger operationLog = LogFactory.getLogger(LogCategory.OPERATION, PhosphoNetXDAOFactory.class); diff --git a/rtd_phosphonetx/source/sql/postgresql/002/schema-002.png b/rtd_phosphonetx/source/sql/postgresql/002/schema-002.png new file mode 100755 index 0000000000000000000000000000000000000000..69f33d205fd55433318b8e294148b3eb20267d5d Binary files /dev/null and b/rtd_phosphonetx/source/sql/postgresql/002/schema-002.png differ diff --git a/rtd_phosphonetx/source/sql/postgresql/002/schema-002.sql b/rtd_phosphonetx/source/sql/postgresql/002/schema-002.sql new file mode 100755 index 0000000000000000000000000000000000000000..4d4128aa57edc9996323abd3542d5de110d9395c --- /dev/null +++ b/rtd_phosphonetx/source/sql/postgresql/002/schema-002.sql @@ -0,0 +1,292 @@ +/* ---------------------------------------------------------------------- */ +/* Script generated with: DeZign for Databases v5.2.3 */ +/* Target DBMS: PostgreSQL 8 */ +/* Project file: schema.dez */ +/* Project name: */ +/* Author: */ +/* Script type: Database creation script */ +/* Created on: 2009-12-07 11:03 */ +/* Model version: Version 2009-12-07 */ +/* ---------------------------------------------------------------------- */ + + +/* ---------------------------------------------------------------------- */ +/* Domains */ +/* ---------------------------------------------------------------------- */ + +CREATE DOMAIN CHECKSUM AS CHARACTER VARYING(8); + +CREATE DOMAIN CODE AS CHARACTER VARYING(40); + +CREATE DOMAIN DESCRIPTION AS CHARACTER VARYING(2000); + +CREATE DOMAIN INTEGER_NUMBER AS INTEGER; + +CREATE DOMAIN REAL_NUMBER AS DOUBLE PRECISION; + +CREATE DOMAIN LONG_SEQUENCE AS TEXT; + +CREATE DOMAIN SHORT_DESCRIPTION AS CHARACTER VARYING(200); + +CREATE DOMAIN TECH_ID AS BIGINT; + +CREATE DOMAIN SHORT_SEQUENCE AS CHARACTER VARYING(1000); + +CREATE DOMAIN ACCESSION_NUMBER AS CHARACTER VARYING(256); + +CREATE DOMAIN SPECTRUM_REFERENCE AS CHARACTER VARYING(100); + +/* ---------------------------------------------------------------------- */ +/* Tables */ +/* ---------------------------------------------------------------------- */ + +/* ---------------------------------------------------------------------- */ +/* Add table "EXPERIMENTS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE EXPERIMENTS ( + ID BIGSERIAL NOT NULL, + PERM_ID CODE NOT NULL, + CONSTRAINT PK_EXPERIMENTS PRIMARY KEY (ID), + CONSTRAINT TUC_EXPERIMENTS_1 UNIQUE (PERM_ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "DATA_SETS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE DATA_SETS ( + ID BIGSERIAL NOT NULL, + EXPE_ID TECH_ID NOT NULL, + SAMP_ID TECH_ID, + DB_ID TECH_ID NOT NULL, + PERM_ID CODE NOT NULL, + CONSTRAINT PK_DATA_SETS PRIMARY KEY (ID), + CONSTRAINT TUC_DATA_SETS_1 UNIQUE (PERM_ID) +); + +CREATE INDEX IX_FK_DATA_SETS_EXPERIMENTS ON DATA_SETS (EXPE_ID); + +CREATE INDEX IX_FK_DATA_SETS_SAMPLES ON DATA_SETS (SAMP_ID); + +/* ---------------------------------------------------------------------- */ +/* Add table "MODIFICATIONS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE MODIFICATIONS ( + ID BIGSERIAL NOT NULL, + MOPE_ID TECH_ID NOT NULL, + POS INTEGER_NUMBER NOT NULL, + MASS REAL_NUMBER NOT NULL, + CONSTRAINT PK_MODIFICATIONS PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "PEPTIDES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE PEPTIDES ( + ID BIGSERIAL NOT NULL, + PROT_ID TECH_ID NOT NULL, + SEQUENCE SHORT_SEQUENCE NOT NULL, + CHARGE INTEGER_NUMBER NOT NULL, + CONSTRAINT PK_PEPTIDES PRIMARY KEY (ID) +); + +CREATE INDEX IX_FK_PEPTIDES_PROTEINS ON PEPTIDES (PROT_ID); + +/* ---------------------------------------------------------------------- */ +/* Add table "PROTEINS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE PROTEINS ( + ID BIGSERIAL NOT NULL, + DASE_ID TECH_ID NOT NULL, + PROBABILITY REAL_NUMBER NOT NULL, + CONSTRAINT PK_PROTEINS PRIMARY KEY (ID) +); + +CREATE INDEX IDX_PROTEINS_1 ON PROTEINS (DASE_ID); + +/* ---------------------------------------------------------------------- */ +/* Add table "SAMPLES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE SAMPLES ( + ID BIGSERIAL NOT NULL, + PERM_ID CODE NOT NULL, + EXPE_ID TECH_ID NOT NULL, + CONSTRAINT PK_SAMPLES PRIMARY KEY (ID), + CONSTRAINT TUC_SAMPLES_1 UNIQUE (PERM_ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "SEQUENCES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE SEQUENCES ( + ID BIGSERIAL NOT NULL, + DB_ID TECH_ID NOT NULL, + PRRE_ID TECH_ID NOT NULL, + AMINO_ACID_SEQUENCE LONG_SEQUENCE NOT NULL, + CHECKSUM CHECKSUM NOT NULL, + CONSTRAINT PK_SEQUENCES PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "IDENTIFIED_PROTEINS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE IDENTIFIED_PROTEINS ( + ID BIGSERIAL NOT NULL, + PROT_ID TECH_ID NOT NULL, + SEQU_ID TECH_ID NOT NULL, + CONSTRAINT PK_IDENTIFIED_PROTEINS PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "ABUNDANCES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE ABUNDANCES ( + ID BIGSERIAL NOT NULL, + PROT_ID TECH_ID NOT NULL, + SAMP_ID TECH_ID NOT NULL, + VALUE REAL_NUMBER NOT NULL, + CONSTRAINT PK_ABUNDANCES PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "PROBABILITY_FDR_MAPPINGS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE PROBABILITY_FDR_MAPPINGS ( + ID BIGSERIAL NOT NULL, + DASE_ID TECH_ID NOT NULL, + PROBABILITY REAL_NUMBER NOT NULL, + FALSE_DISCOVERY_RATE REAL_NUMBER NOT NULL, + CONSTRAINT PK_PROBABILITY_FDR_MAPPINGS PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "PROTEIN_REFERENCES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE PROTEIN_REFERENCES ( + ID BIGSERIAL NOT NULL, + ACCESSION_NUMBER ACCESSION_NUMBER NOT NULL, + DESCRIPTION DESCRIPTION, + CONSTRAINT PK_PROTEIN_REFERENCES PRIMARY KEY (ID), + CONSTRAINT TUC_PROTEIN_REFERENCES_1 UNIQUE (ACCESSION_NUMBER) +); + +CREATE INDEX IDX_PROTEIN_REFERENCES_1 ON PROTEIN_REFERENCES (ACCESSION_NUMBER); + +/* ---------------------------------------------------------------------- */ +/* Add table "DATABASES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE DATABASES ( + ID BIGSERIAL NOT NULL, + NAME_AND_VERSION SHORT_DESCRIPTION NOT NULL, + CONSTRAINT PK_DATABASES PRIMARY KEY (ID), + CONSTRAINT TUC_DATABASES_1 UNIQUE (NAME_AND_VERSION) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "MODIFIED_PEPTIDES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE MODIFIED_PEPTIDES ( + ID BIGSERIAL NOT NULL, + PEPT_ID TECH_ID NOT NULL, + NTERM_MASS REAL_NUMBER NOT NULL, + CTERM_MASS REAL_NUMBER NOT NULL, + CONSTRAINT PK_MODIFIED_PEPTIDES PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "SPECTRUM_REFERENCES" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE SPECTRUM_REFERENCES ( + ID BIGSERIAL NOT NULL, + PEPT_ID TECH_ID NOT NULL, + REFERENCE SPECTRUM_REFERENCE NOT NULL, + CONSTRAINT PK_SPECTRUM_REFERENCES PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "MODIFICATION_FRACTIONS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE MODIFICATION_FRACTIONS ( + ID BIGSERIAL NOT NULL, + MODI_ID TECH_ID NOT NULL, + SAMP_ID TECH_ID, + FRACTION REAL_NUMBER NOT NULL, + CONSTRAINT PK_MODIFICATION_FRACTIONS PRIMARY KEY (ID) +); + +/* ---------------------------------------------------------------------- */ +/* Add table "EVENTS" */ +/* ---------------------------------------------------------------------- */ + +CREATE TABLE EVENTS ( + LAST_SEEN_DELETION_EVENT_ID TECH_ID NOT NULL +); + +/* ---------------------------------------------------------------------- */ +/* Foreign key constraints */ +/* ---------------------------------------------------------------------- */ + +ALTER TABLE DATA_SETS ADD CONSTRAINT DA_EX_FK + FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS (ID); + +ALTER TABLE DATA_SETS ADD CONSTRAINT DA_SA_FK + FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES (ID); + +ALTER TABLE DATA_SETS ADD CONSTRAINT DATABASES_DATA_SETS + FOREIGN KEY (DB_ID) REFERENCES DATABASES (ID); + +ALTER TABLE MODIFICATIONS ADD CONSTRAINT MODIFIED_PEPTIDES_MODIFICATIONS + FOREIGN KEY (MOPE_ID) REFERENCES MODIFIED_PEPTIDES (ID) ON DELETE CASCADE; + +ALTER TABLE PEPTIDES ADD CONSTRAINT PE_PR_FK + FOREIGN KEY (PROT_ID) REFERENCES PROTEINS (ID) ON DELETE CASCADE; + +ALTER TABLE PROTEINS ADD CONSTRAINT DATA_SETS_PROTEINS + FOREIGN KEY (DASE_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE; + +ALTER TABLE SEQUENCES ADD CONSTRAINT DATABASES_SEQUENCES + FOREIGN KEY (DB_ID) REFERENCES DATABASES (ID); + +ALTER TABLE SEQUENCES ADD CONSTRAINT PROTEIN_REFERENCES_SEQUENCES + FOREIGN KEY (PRRE_ID) REFERENCES PROTEIN_REFERENCES (ID); + +ALTER TABLE IDENTIFIED_PROTEINS ADD CONSTRAINT PROTEINS_IDENTIFIED_PROTEINS + FOREIGN KEY (PROT_ID) REFERENCES PROTEINS (ID) ON DELETE CASCADE; + +ALTER TABLE IDENTIFIED_PROTEINS ADD CONSTRAINT SEQUENCES_IDENTIFIED_PROTEINS + FOREIGN KEY (SEQU_ID) REFERENCES SEQUENCES (ID); + +ALTER TABLE ABUNDANCES ADD CONSTRAINT SAMPLES_ABUNDANCES + FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES (ID); + +ALTER TABLE ABUNDANCES ADD CONSTRAINT PROTEINS_ABUNDANCES + FOREIGN KEY (PROT_ID) REFERENCES PROTEINS (ID) ON DELETE CASCADE; + +ALTER TABLE PROBABILITY_FDR_MAPPINGS ADD CONSTRAINT DATA_SETS_PROBABILITY_FDR_MAPPINGS + FOREIGN KEY (DASE_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE; + +ALTER TABLE MODIFIED_PEPTIDES ADD CONSTRAINT PEPTIDES_MODIFIED_PEPTIDES + FOREIGN KEY (PEPT_ID) REFERENCES PEPTIDES (ID) ON DELETE CASCADE; + +ALTER TABLE SPECTRUM_REFERENCES ADD CONSTRAINT PEPTIDES_SPECTRUM_REFERENCES + FOREIGN KEY (PEPT_ID) REFERENCES PEPTIDES (ID) ON DELETE CASCADE; + +ALTER TABLE MODIFICATION_FRACTIONS ADD CONSTRAINT MODIFICATIONS_MODIFICATION_FRACTIONS + FOREIGN KEY (MODI_ID) REFERENCES MODIFICATIONS (ID) ON DELETE CASCADE; + +ALTER TABLE MODIFICATION_FRACTIONS ADD CONSTRAINT SAMPLES_MODIFICATION_FRACTIONS + FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES (ID); diff --git a/rtd_phosphonetx/source/sql/postgresql/migration/migration-001-002.sql b/rtd_phosphonetx/source/sql/postgresql/migration/migration-001-002.sql new file mode 100644 index 0000000000000000000000000000000000000000..36900c0353f3e94c6d1750a4517929ec58e96d1d --- /dev/null +++ b/rtd_phosphonetx/source/sql/postgresql/migration/migration-001-002.sql @@ -0,0 +1,41 @@ +CREATE TABLE EVENTS ( + LAST_SEEN_DELETION_EVENT_ID TECH_ID NOT NULL +); + + +ALTER TABLE MODIFICATIONS DROP CONSTRAINT MODIFIED_PEPTIDES_MODIFICATIONS; +ALTER TABLE MODIFICATIONS ADD CONSTRAINT MODIFIED_PEPTIDES_MODIFICATIONS + FOREIGN KEY (MOPE_ID) REFERENCES MODIFIED_PEPTIDES (ID) ON DELETE CASCADE; + +ALTER TABLE PEPTIDES DROP CONSTRAINT PE_PR_FK; +ALTER TABLE PEPTIDES ADD CONSTRAINT PE_PR_FK + FOREIGN KEY (PROT_ID) REFERENCES PROTEINS (ID) ON DELETE CASCADE; + +ALTER TABLE PROTEINS DROP CONSTRAINT DATA_SETS_PROTEINS; +ALTER TABLE PROTEINS ADD CONSTRAINT DATA_SETS_PROTEINS + FOREIGN KEY (DASE_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE; + +ALTER TABLE IDENTIFIED_PROTEINS DROP CONSTRAINT PROTEINS_IDENTIFIED_PROTEINS; +ALTER TABLE IDENTIFIED_PROTEINS ADD CONSTRAINT PROTEINS_IDENTIFIED_PROTEINS + FOREIGN KEY (PROT_ID) REFERENCES PROTEINS (ID) ON DELETE CASCADE; + +ALTER TABLE ABUNDANCES DROP CONSTRAINT PROTEINS_ABUNDANCES; +ALTER TABLE ABUNDANCES ADD CONSTRAINT PROTEINS_ABUNDANCES + FOREIGN KEY (PROT_ID) REFERENCES PROTEINS (ID) ON DELETE CASCADE; + +ALTER TABLE PROBABILITY_FDR_MAPPINGS DROP CONSTRAINT DATA_SETS_PROBABILITY_FDR_MAPPINGS; +ALTER TABLE PROBABILITY_FDR_MAPPINGS ADD CONSTRAINT DATA_SETS_PROBABILITY_FDR_MAPPINGS + FOREIGN KEY (DASE_ID) REFERENCES DATA_SETS (ID) ON DELETE CASCADE; + +ALTER TABLE MODIFIED_PEPTIDES DROP CONSTRAINT PEPTIDES_MODIFIED_PEPTIDES; +ALTER TABLE MODIFIED_PEPTIDES ADD CONSTRAINT PEPTIDES_MODIFIED_PEPTIDES + FOREIGN KEY (PEPT_ID) REFERENCES PEPTIDES (ID) ON DELETE CASCADE; + +ALTER TABLE SPECTRUM_REFERENCES DROP CONSTRAINT PEPTIDES_SPECTRUM_REFERENCES; +ALTER TABLE SPECTRUM_REFERENCES ADD CONSTRAINT PEPTIDES_SPECTRUM_REFERENCES + FOREIGN KEY (PEPT_ID) REFERENCES PEPTIDES (ID) ON DELETE CASCADE; + +ALTER TABLE MODIFICATION_FRACTIONS DROP CONSTRAINT MODIFICATIONS_MODIFICATION_FRACTIONS; +ALTER TABLE MODIFICATION_FRACTIONS ADD CONSTRAINT MODIFICATIONS_MODIFICATION_FRACTIONS + FOREIGN KEY (MODI_ID) REFERENCES MODIFICATIONS (ID) ON DELETE CASCADE; + \ No newline at end of file diff --git a/rtd_phosphonetx/source/sql/postgresql/schema.dez b/rtd_phosphonetx/source/sql/postgresql/schema.dez new file mode 100755 index 0000000000000000000000000000000000000000..db19fe662755156618c655a908252c195dac69d8 --- /dev/null +++ b/rtd_phosphonetx/source/sql/postgresql/schema.dez @@ -0,0 +1,26141 @@ +<?xml version="1.0" encoding="iso-8859-1"?><dezign> + +<FILEFORMATVERSION>51</FILEFORMATVERSION> +<VERSION> +<PROJECTSETTINGS> +<PROJECTFILENAME>D:\User\felmer\dev-workspace\rtd_phosphonetx\source\sql\postgresql\phosphonetx.dez</PROJECTFILENAME> +<MODIFIED>2009-12-07</MODIFIED> +<CREATED>2009-06-29</CREATED> +<CREATED2></CREATED2> +<PROJECTNAME></PROJECTNAME> +<DESCRIPTION></DESCRIPTION> +<AUTHOR></AUTHOR> +<COPYRIGHT></COPYRIGHT> +<LASTGENERATEDFILES>N:\group\cisd\phosphonetx\datamodel\schema.sql;N:\group\cisd\phosphonetx\datamodel\drop.sql;C:\Users\felmer\Documents\CreateDBLog_200912073.txt</LASTGENERATEDFILES> +</PROJECTSETTINGS> +<CONNECTIONSETTINGS> +<SQLFILE>D:\User\felmer\dev-workspace\rtd_phosphonetx\source\sql\postgresql\001\schema-001.sql</SQLFILE> +<CONNECTIONTYPE>SQLFILE</CONNECTIONTYPE> +<DBID>postgresql8</DBID> +</CONNECTIONSETTINGS> +<DATADICT> +<DBID>postgresql8</DBID> +<LASTID>176</LASTID> +<DDSETTINGS> +<PKCONNAMETEMPLATE>PK_%table%</PKCONNAMETEMPLATE> +<FKCONNAMETEMPLATE>%relname%</FKCONNAMETEMPLATE> +<CCONNAMETEMPLATE>CC_%table%_%column%</CCONNAMETEMPLATE> +<NOTNULLCONNAMETEMPLATE>NN_%column%</NOTNULLCONNAMETEMPLATE> +<DEFAULTCONNAMETEMPLATE>DEF_%table%_%column%</DEFAULTCONNAMETEMPLATE> +<TUCONNAMETEMPLATE>TUC_%table%_%counter%</TUCONNAMETEMPLATE> +<TCCONNAMETEMPLATE>TCC_%table%_%counter%</TCCONNAMETEMPLATE> +<RELNAMETEMPLATE>%parent%_%child%</RELNAMETEMPLATE> +<INDEXNAMETEMPLATE>IDX_%table%_%counter%</INDEXNAMETEMPLATE> +<DEFTABLEOPTIONS></DEFTABLEOPTIONS> +<DEFINDEXOPTIONS></DEFINDEXOPTIONS> +<BEGINDATABASESCRIPT></BEGINDATABASESCRIPT> +<ENDDATABASESCRIP></ENDDATABASESCRIP> +<BEGINALTERDATABASESCRIPT></BEGINALTERDATABASESCRIPT> +<ENDALTERDATABASESCRIP></ENDALTERDATABASESCRIP> +<BEGINDROPDATABASESCRIPT></BEGINDROPDATABASESCRIPT> +<ENDDROPDATABASESCRIP></ENDDROPDATABASESCRIP> +<GENDIALOGSELECTEDOBJECTS></GENDIALOGSELECTEDOBJECTS> +<GENTABLES>1</GENTABLES> +<GENTABLEOPTIONS>1</GENTABLEOPTIONS> +<GENCONSTRAINTS>1</GENCONSTRAINTS> +<GENINDEXES>1</GENINDEXES> +<GENTRIGGERS>1</GENTRIGGERS> +<GENVIEWS>1</GENVIEWS> +<GENPROCEDURES>1</GENPROCEDURES> +<GENSEQUENCES>1</GENSEQUENCES> +<GENRELATIONSHIPS>1</GENRELATIONSHIPS> +<GENBEGINENDTABLESCRIPTS>1</GENBEGINENDTABLESCRIPTS> +<GENBEGINENDDBSCRIPTS>1</GENBEGINENDDBSCRIPTS> +<GLOBALPREFIX></GLOBALPREFIX> +<AUTOCREATEINDEXESONKEYS>0</AUTOCREATEINDEXESONKEYS> +<CONVERTDOMAINS>0</CONVERTDOMAINS> +<IGNORECOMMENTS>0</IGNORECOMMENTS> +<USESCHEMANAMES>0</USESCHEMANAMES> +<UCONNAMETEMPLATE></UCONNAMETEMPLATE> +<SQLCREATEFILE>N:\group\cisd\phosphonetx\datamodel\schema.sql</SQLCREATEFILE> +<SQLDROPFILE>N:\group\cisd\phosphonetx\datamodel\drop.sql</SQLDROPFILE> +</DDSETTINGS> +<DOMAINS> +<DOMAIN> +<NAME>CHECKSUM</NAME> +<ID>4</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>8</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>CODE</NAME> +<ID>5</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>40</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>DESCRIPTION</NAME> +<ID>6</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>2000</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>INTEGER_NUMBER</NAME> +<ID>7</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>INTEGER</DTLISTNAME> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>REAL_NUMBER</NAME> +<ID>8</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>DOUBLE PRECISION</DTLISTNAME> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>LONG_SEQUENCE</NAME> +<ID>9</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>TEXT</DTLISTNAME> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>SHORT_DESCRIPTION</NAME> +<ID>11</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>200</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>TECH_ID</NAME> +<ID>12</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>BIGINT</DTLISTNAME> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>SHORT_SEQUENCE</NAME> +<ID>69</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>1000</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>ACCESSION_NUMBER</NAME> +<ID>109</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>256</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +<DOMAIN> +<NAME>SPECTRUM_REFERENCE</NAME> +<ID>171</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DT> +<DTLISTNAME>CHARACTER VARYING</DTLISTNAME> +<LE>100</LE> +<SD>0</SD> +<INC>1</INC> +</DT> +</DOMAIN> +</DOMAINS> +<ENTITIES> +<ENT> +<NAME>EXPERIMENTS</NAME> +<NAMETEMPLATE>PK_%table%</NAMETEMPLATE> +<ID>16</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<ATTRLASTID>3</ATTRLASTID> +<IDXLASTID>1</IDXLASTID> +<TRGLASTID>1</TRGLASTID> +<CONLASTID>2</CONLASTID> +<PKCON> +<NAME>PK_EXPERIMENTS</NAME> +<NAMETEMPLATE>PK_%table%</NAMETEMPLATE> +<ID>1</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<CONLEVEL>2</CONLEVEL> +<CONTYPE>3</CONTYPE> +<ATTRIBUTEIDS> +<ATTRIBUTEID>2</ATTRIBUTEID> +</ATTRIBUTEIDS> +</PKCON> +<ATTRIBUTES> +<ATTR> +<NAME>ID</NAME> +<ID>2</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<DOMAINID>-1</DOMAINID> +<DT> +<DTLISTNAME>BIGSERIAL</DTLISTNAME> +<SD>0</SD> +<INC>1</INC> +</DT> +<NNCON> +<NAME></NAME> +<ID>1</ID> +<POSNR>0</POSNR> +<SCHEMA></SCHEMA> +<DESC></DESC> +<VALUE>1</VALUE> +<CONLEVEL>1</CONLEVEL> +<CONTYPE>5</CONTYPE> +<ATTRIBUTEIDS> +<ATTRIBUTEID>2</ATTRIBUTEID> +</ATTRIBUTEIDS> +</NNCON> +</ATTR> 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