From ff0d34b65125c84935198407d2e3987504a40e2b Mon Sep 17 00:00:00 2001
From: tpylak <tpylak>
Date: Fri, 25 Jun 2010 13:03:30 +0000
Subject: [PATCH] LMS-1546 screening integration test script
SVN: 16744
---
integration-tests/test-screening.sh | 144 ++++++++++++++++++++++++++++
1 file changed, 144 insertions(+)
create mode 100755 integration-tests/test-screening.sh
diff --git a/integration-tests/test-screening.sh b/integration-tests/test-screening.sh
new file mode 100755
index 00000000000..3979bef59b6
--- /dev/null
+++ b/integration-tests/test-screening.sh
@@ -0,0 +1,144 @@
+#!/bin/sh
+#
+# The integration test scenario for screening workflow.
+#
+
+# --- include external sources ------------------------
+
+source common.bash
+
+# --------------------
+
+#WORK=$TARGETS/playground-screening
+DATA_TEMPLATE=$TEMPLATE/data-screening.zip
+MY_DATA=$WORK/data-screening
+IMAGING_DB=imaging_integration_tests
+OPENBIS_SERVER_HCS=$WORK/openBIS-server-screening
+DSS_DIR_NAME=datastore_server_screening
+DSS_INCOMING_PARENT_DIR=$WORK/$DSS_DIR_NAME/data
+SVN_WEB_SRC_HCS=http://svncisd.ethz.ch/repos/cisd/screening/trunk
+OPENBIS_DATABASE_HCS=openbis_screening
+
+# --------------------
+
+# Prepare template incoming data and some destination data structures
+function prepare_data_first_phase {
+ rm -fr $DSS_INCOMING_PARENT_DIR/incoming*
+ unzip $DATA_TEMPLATE -d $DSS_INCOMING_PARENT_DIR -x incoming-analysis-genedata/*
+ mkdir -p $DSS_INCOMING_PARENT_DIR/incoming-analysis-genedata
+ chmod -R 700 $DSS_INCOMING_PARENT_DIR/incoming*
+}
+
+function prepare_data_second_phase {
+ unzip $DATA_TEMPLATE -d $DSS_INCOMING_PARENT_DIR incoming-analysis-genedata/*
+ chmod -R 700 $DSS_INCOMING_PARENT_DIR/incoming*
+}
+
+function build_and_install_components {
+ rm -fr $INSTALL
+ mkdir -p $INSTALL
+ fetch_latest_artifacts_from_cruise_control screening $INSTALL
+}
+
+function install_openbis_server_screening {
+ local install_openbis=$1
+
+ local openbis_server_dir=$OPENBIS_SERVER_HCS
+ local openbis_server_name=`basename $openbis_server_dir`
+
+ restore_database $OPENBIS_DATABASE_HCS $TEMPLATE/$openbis_server_name/test_database.sql
+ if [ $install_openbis == "true" ]; then
+ rm -fr $openbis_server_dir
+
+ unzip -d $openbis_server_dir $INSTALL/openBIS*.zip
+ mv $openbis_server_dir/openBIS-server/* $openbis_server_dir
+ rmdir $openbis_server_dir/openBIS-server
+
+ $openbis_server_dir/install.sh $PWD/$openbis_server_dir
+ startup_openbis_server $openbis_server_dir
+ wait_for_server
+ else
+ restart_openbis $openbis_server_dir
+ fi
+}
+
+function install_dss_screening {
+ local dss_dest=$WORK/$DSS_DIR_NAME
+ local dss_template=$TEMPLATE/$DSS_DIR_NAME
+
+ rm -fr $dss_dest
+ unzip $INSTALL/datastore_server-screening*.zip -d $dss_dest
+ mv $dss_dest/datastore_server/* $dss_dest
+ rmdir $dss_dest/datastore_server
+
+ # extend distribution configuration
+ cat $dss_template/integration-tests-service.properties >> $dss_dest/etc/service.properties
+ cat $dss_template/genedata-dropboxes-service.properties >> $dss_dest/etc/service.properties
+}
+
+function build_and_install_screening {
+ mkdir -p $WORK
+ install_dss_screening
+ install_openbis_server_screening "true"
+
+ echo Dropping imaging database: $IMAGING_DB
+ psql_cmd=`run_psql`
+ $psql_cmd -U postgres -c "drop database if exists $IMAGING_DB"
+}
+
+function check_file_exists {
+ local file=$1
+ if [ -e $marker ]; then echo true; else echo false; fi
+}
+
+function assert_correct_incoming_content {
+ local dir_name=$1
+ local expected_file_count=$2
+ local has_error_marker=$3
+
+ local dir=$MY_DATA/incoming/$dir_name
+ assert_dir_exists $dir
+ if [ ! -e $dir ]; then
+ return
+ fi
+
+ assert_files_number $dir $expected_file_count
+
+ local marker=$dir/_delete_me_after_correcting_errors
+ local error_log=$dir/error-log.txt
+ if [ "$has_error_marker" = "true" ]; then
+ assert_file_exists $marker
+ assert_file_exists $error_log
+ else
+ assert_file_not_exists $marker
+ assert_file_not_exists $error_log
+ fi
+}
+
+
+function integration_tests_screening {
+ build_and_install_screening
+
+ prepare_data_first_phase
+ switch_dss "on" datastore_server_screening
+ sleep 60
+ prepare_data_second_phase
+ sleep 20
+
+ assert_dir_empty $DSS_INCOMING_PARENT_DIR/incoming-analysis
+ assert_dir_empty $DSS_INCOMING_PARENT_DIR/incoming-analysis-genedata
+ assert_dir_empty $DSS_INCOMING_PARENT_DIR/incoming-images-genedata
+ assert_dir_empty $DSS_INCOMING_PARENT_DIR/incoming-images-merged-channels
+ assert_dir_empty $DSS_INCOMING_PARENT_DIR/incoming-images-split-channels
+
+ switch_dss "off" datastore_server_screening
+ shutdown_openbis_server $OPENBIS_SERVER_HCS
+ exit_if_assertion_failed
+}
+
+function build_and_test {
+ build_and_install_components
+ integration_tests_screening
+}
+
+build_and_test
--
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