diff --git a/openbis/.classpath b/openbis/.classpath
deleted file mode 100644
index ee9ebd3be5fb53e68e25b89025a49af8321b0759..0000000000000000000000000000000000000000
--- a/openbis/.classpath
+++ /dev/null
@@ -1,88 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
- <classpathentry kind="src" path="source/java"/>
- <classpathentry excluding="ch/systemsx/cisd/openbis/plugin/generic/client/web/client/application/sample/CopyOfGenericSampleViewerTest.java" kind="src" path="sourceTest/java"/>
- <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
- <classpathentry combineaccessrules="false" exported="true" kind="src" path="/authentication"/>
- <classpathentry combineaccessrules="false" kind="src" path="/common"/>
- <classpathentry combineaccessrules="false" exported="true" kind="src" path="/openbis-common"/>
- <classpathentry combineaccessrules="false" exported="true" kind="src" path="/openbis_api"/>
- <classpathentry kind="lib" path="/libraries/testng/testng-jdk15.jar" sourcepath="/libraries/testng/src.zip"/>
- <classpathentry kind="lib" path="/libraries/log4j/log4j.jar" sourcepath="/libraries/log4j/src.zip"/>
- <classpathentry kind="lib" path="/libraries/commons-lang/commons-lang.jar" sourcepath="/libraries/commons-lang/src.zip"/>
- <classpathentry kind="lib" path="/libraries/restrictionchecker/restrictions.jar"/>
- <classpathentry combineaccessrules="false" exported="true" kind="src" path="/dbmigration"/>
- <classpathentry kind="lib" path="/libraries/jmock/hamcrest/hamcrest-core.jar"/>
- <classpathentry kind="lib" path="/libraries/jmock/hamcrest/hamcrest-library.jar"/>
- <classpathentry kind="lib" path="/libraries/jmock/objenesis/objenesis-1.0.jar"/>
- <classpathentry kind="lib" path="/libraries/jmock/jmock.jar"/>
- <classpathentry kind="lib" path="/libraries/hibernate-validator/hibernate-validator.jar" sourcepath="/libraries/hibernate-validator/src.jar"/>
- <classpathentry kind="lib" path="/libraries/commons-io/commons-io.jar" sourcepath="/libraries/commons-io/src.zip"/>
- <classpathentry kind="lib" path="/libraries/commons-logging/commons-logging.jar" sourcepath="/libraries/commons-logging/src.zip"/>
- <classpathentry kind="lib" path="/libraries/dom4j/dom4j.jar"/>
- <classpathentry kind="lib" path="/libraries/antlr/antlr.jar"/>
- <classpathentry kind="lib" path="/libraries/slf4j/slf4j.jar" sourcepath="/libraries/slf4j/src.jar"/>
- <classpathentry kind="lib" path="/libraries/slf4j/log4j12/slf4j-log4j12.jar" sourcepath="/libraries/slf4j/log4j12/src.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/test/spring-test.jar" sourcepath="/libraries/spring/test/src.jar"/>
- <classpathentry kind="lib" path="/libraries/commons-collections/commons-collections.jar" sourcepath="/libraries/commons-collections/src.jar"/>
- <classpathentry kind="lib" path="/libraries/junit/junit.jar" sourcepath="/libraries/junit/src.jar"/>
- <classpathentry kind="lib" path="/libraries/hibernate-search/hibernate-search.jar" sourcepath="/libraries/hibernate-search/src.zip"/>
- <classpathentry kind="lib" path="/libraries/hibernate-search/jms.jar"/>
- <classpathentry kind="lib" path="/libraries/ehcache/ehcache.jar" sourcepath="/libraries/ehcache/src.zip"/>
- <classpathentry kind="lib" path="/libraries/javassist/javassist.jar" sourcepath="/libraries/javassist/src.zip"/>
- <classpathentry kind="lib" path="/libraries/lucene/lucene-core.jar" sourcepath="/libraries/lucene/lucene-2.4.1-src.zip"/>
- <classpathentry kind="lib" path="/libraries/commons-fileupload/commons-fileupload.jar" sourcepath="/libraries/commons-fileupload/src.zip"/>
- <classpathentry kind="lib" path="/libraries/lucene-highlighter/lucene-highlighter.jar" sourcepath="/libraries/lucene-highlighter/lucene-highlighter-javadoc.jar"/>
- <classpathentry kind="lib" path="/libraries/apgdiff/apgdiff.jar" sourcepath="/libraries/apgdiff/src.zip"/>
- <classpathentry kind="lib" path="/libraries/cisd-base/cisd-base.jar" sourcepath="/libraries/cisd-base/cisd-base-src.zip"/>
- <classpathentry kind="lib" path="/libraries/eodsql/eodsql.jar" sourcepath="/libraries/eodsql/eodsql_src.zip"/>
- <classpathentry kind="lib" path="/libraries/fastutil/fastutil.jar" sourcepath="/libraries/fastutil/fastutil-src.zip"/>
- <classpathentry kind="lib" path="/libraries/cisd-args4j/cisd-args4j.jar" sourcepath="/libraries/cisd-args4j/cisd-args4j-src.zip"/>
- <classpathentry kind="lib" path="/libraries/commons-dbcp/commons-dbcp.jar" sourcepath="/libraries/commons-dbcp/src.zip"/>
- <classpathentry kind="lib" path="/libraries/jline/jline.jar" sourcepath="/libraries/jline/src.zip"/>
- <classpathentry kind="lib" path="/libraries/gwt-debug-panel/gwt-debug-panel.jar" sourcepath="/gwt-debug-panel-read-only"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/common/jetty-util.jar"/>
- <classpathentry kind="lib" path="/libraries/gwt-image-loader/gwt-image-loader.jar"/>
- <classpathentry kind="lib" path="/libraries/mail/mail.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/jetty-server.jar" sourcepath="/libraries/jetty8/src/jetty_src.zip"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/jetty-servlet.jar" sourcepath="/libraries/jetty8/src/jetty_src.zip"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/servlet-api-3.0.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/common/jetty-http.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/common/jetty-io.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/jetty-continuation.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/jetty-security.jar"/>
- <classpathentry kind="lib" path="/libraries/jython/jython.jar" sourcepath="/libraries/jython/jython_src.zip"/>
- <classpathentry kind="lib" path="/libraries/gwt2.4/gwt-user.jar"/>
- <classpathentry kind="lib" path="/libraries/gxt2.2.5/gxt.jar"/>
- <classpathentry kind="lib" path="/libraries/gwt2.4/validation-api-1.0.0.GA.jar" sourcepath="/libraries/gwt2.4/validation-api-1.0.0.GA-sources.jar"/>
- <classpathentry kind="lib" path="/libraries/gwt2.4/validation-api-1.0.0.GA-sources.jar"/>
- <classpathentry kind="lib" path="/libraries/hibernate-commons-annotations/hibernate-commons-annotations.jar"/>
- <classpathentry kind="lib" path="/libraries/jta/jta.jar"/>
- <classpathentry kind="lib" path="/libraries/hibernate-jpa-2.0-api/hibernate-jpa-2.0-api.jar"/>
- <classpathentry kind="lib" path="/libraries/validation-api/validation-api.jar"/>
- <classpathentry kind="lib" path="/libraries/hibernate-core/hibernate-core.jar" sourcepath="/libraries/hibernate-core/hibernate-core-sources.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring-core.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring-beans.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring-web.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring-context.jar" sourcepath="/libraries/spring/src.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring-jdbc.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring-aop.jar" sourcepath="/libraries/spring/src.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/third-party/aopalliance.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/webmvc/spring-webmvc.jar"/>
- <classpathentry kind="lib" path="/libraries/spring/spring.jar"/>
- <classpathentry kind="lib" path="/libraries/jmock/hamcrest/hamcrest-integration.jar"/>
- <classpathentry kind="lib" path="/libraries/hibernate-search/jsr250-api.jar"/>
- <classpathentry kind="lib" path="/libraries/jackson/jackson-annotations.jar"/>
- <classpathentry kind="lib" path="/libraries/jackson/jackson-core.jar"/>
- <classpathentry kind="lib" path="/libraries/jackson/jackson-databind.jar"/>
- <classpathentry kind="lib" path="/libraries/jsonrpc4j/jsonrpc4j.jar" sourcepath="/libraries/jsonrpc4j/jsonrpc4j-sources.jar"/>
- <classpathentry kind="lib" path="/libraries/poi/poi-ooxml-schemas.jar"/>
- <classpathentry kind="lib" path="/libraries/poi/poi-ooxml.jar"/>
- <classpathentry kind="lib" path="/libraries/poi/poi.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/jetty-deploy.jar"/>
- <classpathentry kind="lib" path="/libraries/jetty8/lib/server/jetty-webapp.jar"/>
- <classpathentry kind="lib" path="/libraries/lucene-queries/lucene-queries.jar"/>
- <classpathentry kind="lib" path="/libraries/cisd-hotdeploy/cisd-hotdeploy.jar" sourcepath="/libraries/cisd-hotdeploy/cisd-hotdeploy-src.zip"/>
- <classpathentry kind="lib" path="/libraries/poi/ooxml-lib/xmlbeans-2.3.0.jar"/>
- <classpathentry kind="output" path="targets/www/WEB-INF/classes"/>
-</classpath>
diff --git a/openbis/.project b/openbis/.project
deleted file mode 100644
index 5728580db6aab2cc5862d478151738e86125ad0f..0000000000000000000000000000000000000000
--- a/openbis/.project
+++ /dev/null
@@ -1,34 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<projectDescription>
- <name>openbis</name>
- <comment></comment>
- <projects>
- </projects>
- <buildSpec>
- <buildCommand>
- <name>org.python.pydev.PyDevBuilder</name>
- <arguments>
- </arguments>
- </buildCommand>
- <buildCommand>
- <name>org.eclipse.jdt.core.javabuilder</name>
- <arguments>
- </arguments>
- </buildCommand>
- </buildSpec>
- <natures>
- <nature>org.eclipse.jdt.core.javanature</nature>
- <nature>org.python.pydev.pythonNature</nature>
- </natures>
- <filteredResources>
- <filter>
- <id>1332321366607</id>
- <name></name>
- <type>26</type>
- <matcher>
- <id>org.eclipse.ui.ide.multiFilter</id>
- <arguments>1.0-name-matches-true-false-.git</arguments>
- </matcher>
- </filter>
- </filteredResources>
-</projectDescription>
diff --git a/openbis/.settings/org.eclipse.jdt.ui.prefs b/openbis/.settings/org.eclipse.jdt.ui.prefs
deleted file mode 100644
index 954b0282f418a61dee15bbddd3720a6fbf0028ab..0000000000000000000000000000000000000000
--- a/openbis/.settings/org.eclipse.jdt.ui.prefs
+++ /dev/null
@@ -1,55 +0,0 @@
-#Wed Apr 20 13:05:19 CEST 2011
-eclipse.preferences.version=1
-editor_save_participant_org.eclipse.jdt.ui.postsavelistener.cleanup=true
-sp_cleanup.add_default_serial_version_id=true
-sp_cleanup.add_generated_serial_version_id=false
-sp_cleanup.add_missing_annotations=true
-sp_cleanup.add_missing_deprecated_annotations=true
-sp_cleanup.add_missing_methods=false
-sp_cleanup.add_missing_nls_tags=false
-sp_cleanup.add_missing_override_annotations=true
-sp_cleanup.add_missing_override_annotations_interface_methods=true
-sp_cleanup.add_serial_version_id=false
-sp_cleanup.always_use_blocks=true
-sp_cleanup.always_use_parentheses_in_expressions=false
-sp_cleanup.always_use_this_for_non_static_field_access=false
-sp_cleanup.always_use_this_for_non_static_method_access=false
-sp_cleanup.convert_to_enhanced_for_loop=false
-sp_cleanup.correct_indentation=false
-sp_cleanup.format_source_code=true
-sp_cleanup.format_source_code_changes_only=false
-sp_cleanup.make_local_variable_final=false
-sp_cleanup.make_parameters_final=false
-sp_cleanup.make_private_fields_final=true
-sp_cleanup.make_type_abstract_if_missing_method=false
-sp_cleanup.make_variable_declarations_final=true
-sp_cleanup.never_use_blocks=false
-sp_cleanup.never_use_parentheses_in_expressions=true
-sp_cleanup.on_save_use_additional_actions=false
-sp_cleanup.organize_imports=true
-sp_cleanup.qualify_static_field_accesses_with_declaring_class=false
-sp_cleanup.qualify_static_member_accesses_through_instances_with_declaring_class=true
-sp_cleanup.qualify_static_member_accesses_through_subtypes_with_declaring_class=true
-sp_cleanup.qualify_static_member_accesses_with_declaring_class=false
-sp_cleanup.qualify_static_method_accesses_with_declaring_class=false
-sp_cleanup.remove_private_constructors=true
-sp_cleanup.remove_trailing_whitespaces=false
-sp_cleanup.remove_trailing_whitespaces_all=true
-sp_cleanup.remove_trailing_whitespaces_ignore_empty=false
-sp_cleanup.remove_unnecessary_casts=true
-sp_cleanup.remove_unnecessary_nls_tags=false
-sp_cleanup.remove_unused_imports=false
-sp_cleanup.remove_unused_local_variables=false
-sp_cleanup.remove_unused_private_fields=true
-sp_cleanup.remove_unused_private_members=false
-sp_cleanup.remove_unused_private_methods=true
-sp_cleanup.remove_unused_private_types=true
-sp_cleanup.sort_members=false
-sp_cleanup.sort_members_all=false
-sp_cleanup.use_blocks=false
-sp_cleanup.use_blocks_only_for_return_and_throw=false
-sp_cleanup.use_parentheses_in_expressions=false
-sp_cleanup.use_this_for_non_static_field_access=false
-sp_cleanup.use_this_for_non_static_field_access_only_if_necessary=true
-sp_cleanup.use_this_for_non_static_method_access=false
-sp_cleanup.use_this_for_non_static_method_access_only_if_necessary=true
diff --git a/openbis/build/antrun.sh b/openbis/build/antrun.sh
deleted file mode 100755
index 5ff1a62b259d6011d228440f2fb89ec0dbecf747..0000000000000000000000000000000000000000
--- a/openbis/build/antrun.sh
+++ /dev/null
@@ -1,6 +0,0 @@
-#! /bin/bash
-
-ME="$0"
-MYDIR=${ME%/*}
-cd $MYDIR
-ant -lib ../../build_resources/lib/ecj.jar "$@"
diff --git a/openbis/build/build.xml b/openbis/build/build.xml
deleted file mode 100644
index 0967ad3525eb951467a3c17fc868550336ef55f1..0000000000000000000000000000000000000000
--- a/openbis/build/build.xml
+++ /dev/null
@@ -1,1054 +0,0 @@
-<project name="openbis" default="dist" basedir="..">
- <import file="../../openbis-common/build/build-common.xml" />
- <project-classpath name="ecp" classes="${classes}" />
- <project-classpath name="eclipse.cp" classes="${targets}/classes" />
- <project-classpath name="ecp.gwt" classes="${targets}/www/WEB-INF/classes" />
-
- <property name="mainfolder" value="openbis" />
-
- <property name="gwt.lib" value="${lib}/gwt2.4" />
- <property name="gwt.user.lib" value="${gwt.lib}/gwt-user.jar" />
- <property name="gwt.debugpanel.lib" value="${lib}/gwt-debug-panel/gwt-debug-panel.jar" />
- <property name="gwt.sources" value="${gwt.lib}/gwt-dev.jar:${gwt.user.lib}:${gwt.debugpanel.lib}:../common/${sources}:../openbis_api/${sources}:../openbis/${sources}:${sources}" />
-
- <property name="original.server.dist" value="${original.dist}/server" />
- <property name="original.openbis.server.dist" value="../openbis/dist/server" />
- <property name="server.folder.name" value="openBIS-server" />
- <property name="server.dist" value="${dist}/${server.folder.name}" />
- <property name="server.jar.file.name" value="openBIS.jar" />
- <property name="server.jar.file" value="${server.dist}/${server.jar.file.name}" />
- <property name="server.webapp.file" value="${server.dist}/openBIS.war" />
- <property name="server.service" value="${server.dist}/service" />
- <property name="server.service.lib" value="${server.service}/lib" />
- <property name="application.server.resource" value="../${ant.project.name}/${server-resource}" />
-
- <property name="webapp.dist" value="${dist}/webapp" />
- <property name="webapp.dist.web-inf" value="${webapp.dist}/WEB-INF" />
-
- <property name="jar.file.name" value="openbis.jar" />
- <property name="jar.file" value="${dist}/${jar.file.name}" />
- <property name="admin.console" value="openbis-admin-console" />
- <property name="admin.jar.file" value="${dist}/${admin.console}.jar" />
- <property name="admin.dist.file" value="${dist}/${admin.console}.zip" />
-
- <property name="webapp.file.name" value="openBIS.war" />
- <property name="webapp.file" value="${server.dist}/${webapp.file.name}" />
-
- <property name="core-plugins.folder" value="source/core-plugins"/>
- <property name="core-plugins.package.marker.file" value="package-to-dist"/>
-
-
- <!-- Properties for testing javascript, in particular common-dictionary.js -->
- <property name="rhino.lib" value="${lib}/rhino/js.jar" />
-
- <!--
- // Cleans distribution directory.
- -->
- <target name="clean" description="Cleans distribution directory.">
- <delete dir="${dist}" failonerror="true" />
- <mkdir dir="${dist}" />
- </target>
-
- <!--
- // Runs tests.
- -->
- <target name="run-tests" depends="check-dictionary-syntax">
- <antcall target="build-common.run-tests">
- <param name="test.suite" value="tests.xml" />
- </antcall>
- </target>
-
- <!--
- // Macro that runs a GWT system test suite. Attributes:
- // - 'testsuite' (mandatory)
- // fully qualified class name of the GWT system test suite to run
- // - 'failureproperty' (optional, default="tests.failed")
- // name of a property that will hold info about failure
- -->
- <macrodef name="run-system-test-suite" description="runs one system test suite">
- <attribute name="testsuite"/>
- <attribute name="failureproperty" default="tests.failed"/>
- <sequential>
- <echo>Running @{testsuite}...</echo>
- <!-- add showoutput="true" when running locally for additional output on console -->
- <junit dir="." fork="true" forkmode="once" maxmemory="2048m"
- failureproperty="@{failureproperty}" printsummary="on">
- <classpath>
- <pathelement location="${sources}" />
- <pathelement location="${sources.test}" />
- <pathelement location="../common/${sources}" />
- <pathelement path="${ecp}" />
- <pathelement location="${gwt.lib}/gwt-dev.jar" />
- </classpath>
- <jvmarg value="-ea" />
- <sysproperty key="authentication-service" value="file-authentication-service" />
- <sysproperty key="database.create-from-scratch" value="true" />
- <sysproperty key="database.kind" value="system_test" />
- <sysproperty key="script-folder" value="sourceTest" />
- <sysproperty key="mass-upload-folder" value="sourceTest/sql/postgresql" />
- <sysproperty key="log4j.configuration" value="etc/log.xml" />
- <sysproperty key="hibernate.search.index-base" value="sourceTest/lucene/indices" />
- <sysproperty key="hibernate.search.index-mode" value="NO_INDEX" />
- <sysproperty key="hibernate.search.indexing_strategy" value="manual" />
- <sysproperty key="gwt.args" value="-testMethodTimeout 5 -Xtries 1" />
- <formatter type="xml" />
- <test name="@{testsuite}" todir="${output.test}" />
- </junit>
- </sequential>
- </macrodef>
-
- <!--
- // Runs all system tests suite
- -->
- <target name="run-system-tests" depends="prepare-gwt, compile-tests, run-system-tests-no-prep"/>
-
- <target name="run-system-tests-no-prep">
- <delete dir="${output.test}" />
- <mkdir dir="${output.test}" />
- <run-system-test-suite testsuite="ch.systemsx.cisd.openbis.generic.EditingTestSuite1"/>
- <run-system-test-suite testsuite="ch.systemsx.cisd.openbis.generic.EditingTestSuite2"/>
- <run-system-test-suite testsuite="ch.systemsx.cisd.openbis.generic.ViewingTestSuite1"/>
- <run-system-test-suite testsuite="ch.systemsx.cisd.openbis.generic.ViewingTestSuite2"/>
- <run-system-test-suite testsuite="ch.systemsx.cisd.openbis.generic.ViewingTestSuite3"/>
- <fail if="tests.failed" message="At least one of system test suites failed."/>
- </target>
-
- <target name="prepare-system-tests" depends="prepare-gwt, compile-tests"/>
-
- <!--
- // Must pass in 'testsuite'. Should be performed after prepare-system-tests.
- -->
- <target name="run-single-system-test-suite">
- <delete dir="${output.test}" />
- <mkdir dir="${output.test}" />
- <run-system-test-suite testsuite="${testsuite}"/>
- <fail if="tests.failed" message="${testsuite} failed."/>
- </target>
-
- <!--
- // Makes a distribution file.
- -->
- <target name="dist" description="Makes a distribution file.">
- <antcall target="make-dist">
- <param name="variant" value="" />
- </antcall>
- </target>
-
- <!--
- Build the checksum file.
- -->
- <target name="compute-checksum" depends="compute-separate-checksums">
- <concat-checksums />
- </target>
-
- <!--
- Compute checksum files, one per configuration file, and place them
- in the ${dist} dir.
-
- The pattern shown in the file should be:
- hash[two spaces]path_in_distribution_to_file
- e.g.,
- {0} [folder of file]{1}
- -->
- <target name="compute-separate-checksums">
- <checksum todir="${dist}" pattern="{0} webapps/openbis/WEB-INF/classes/{1}">
- <fileset dir="${sources}">
- <include name="*Context.xml" />
- </fileset>
- <fileset dir="../openbis/${sources}">
- <include name="*Context.xml" />
- </fileset>
- <fileset dir="../common/${sources}">
- <include name="*Context.xml" />
- </fileset>
- <fileset dir="dist/server">
- <include name="service.properties" />
- </fileset>
- </checksum>
- <checksum todir="${dist}" pattern="{0} webapps/openbis/WEB-INF/{1}">
- <fileset dir="resource/server">
- <include name="web.xml" />
- <include name="spring-servlet.xml" />
- </fileset>
- <fileset dir="../common/resource/server">
- <include name="web-common.xml" />
- </fileset>
- <fileset dir="../openbis/resource/server">
- <include name="bis-common.xml" />
- </fileset>
- </checksum>
- <checksum todir="${dist}" pattern="{0} webapps/openbis/{1}">
- <fileset dir="${sources}/ch/systemsx/cisd/openbis">
- <include name="common.dictionary.js" />
- <include name="*.html" />
- </fileset>
- <fileset dir="../common/resource/server">
- <include name="web-common.xml" />
- </fileset>
- </checksum>
- <checksum todir="${dist}" pattern="{0} bin/{1}">
- <fileset dir="dist/server">
- <include name="openbis.conf" />
- <include name="passwd.sh" />
- <include name="setup-env" />
- <include name="shutdown.sh" />
- <include name="startup.sh" />
- <include name="status.sh" />
- <include name="check.sh" />
- <include name="version.sh" />
- <include name="watchdog.sh" />
- <include name="register-master-data.sh" />
- <include name="export-master-data.sh" />
- <include name="export-master-data.py" />
- <include name="configure.sh" />
- </fileset>
- </checksum>
- <checksum todir="${dist}" pattern="{0} etc/{1}">
- <fileset dir="dist/server">
- <include name="jetty.xml" />
- <include name="openBIS.keystore" />
- <include name="web-client.properties" />
- </fileset>
- <fileset dir="dist/server/etc">
- <include name="log.xml" />
- <include name="core-plugins.properties" />
- </fileset>
- </checksum>
- </target>
-
- <target name="admin-console-dist" depends="jar"
- description="Makes a distribution file for the admin console.">
- <zip update="true" destfile="${admin.jar.file}">
- <zipfileset src="${lib}/cisd-base/cisd-base.jar"/>
- <zipfileset src="${lib}/commons-codec/commons-codec.jar"/>
- <zipfileset src="${lib}/commons-httpclient/commons-httpclient.jar"/>
- <zipfileset src="${lib}/commons-io/commons-io.jar"/>
- <zipfileset src="${lib}/commons-logging/commons-logging.jar"/>
- <zipfileset src="${lib}/jline/jline.jar"/>
- <zipfileset src="${lib}/log4j/log4j.jar"/>
- <zipfileset src="${lib}/spring/spring.jar"/>
- <zipfileset src="${lib}/spring/third-party/stream-supporting-httpinvoker.jar"/>
- </zip>
- <zip destfile="${admin.dist.file}">
- <zipfileset prefix="${admin.console}" file="${admin.jar.file}"/>
- </zip>
- <delete file="${admin.jar.file}"/>
- </target>
-
- <!--
- Pattern sets of API sources
- -->
- <!-- Pattern sets of API source in project 'openbis' -->
- <patternset id="openbis-api-sources">
- <include name="ch/systemsx/cisd/openbis/plugin/query/client/api/v1/**" />
- <include name="ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/**" />
- <include name="ch/systemsx/cisd/openbis/generic/shared/api/v1/**" />
- <include name="ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/**" />
- </patternset>
-
- <!-- Pattern sets of API source in project 'openbis_api' -->
- <patternset id="openbis_api-api-sources">
- <include name="ch/systemsx/cisd/openbis/generic/shared/api/v1/**" />
- <include name="ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/**" />
- </patternset>
-
- <!-- Pattern sets of API source in project 'common' -->
- <patternset id="common-api-sources">
- <include name="ch/systemsx/cisd/common/exceptions/**" />
- <include name="ch/systemsx/cisd/common/api/**" />
- <include name="ch/systemsx/cisd/common/spring/HttpInvokerUtils.java" />
- </patternset>
-
- <!-- Pattern sets of API source in project 'openbis-common' -->
- <patternset id="openbis-common-api-sources">
- <include name="ch/systemsx/cisd/common/api/client/**" />
- </patternset>
-
- <target name="core-plugins-dist">
- <antcall target="copy-core-plugins">
- <param name="project-path" value=""/>
- <param name="plugin-kind" value="as"/>
- </antcall>
- </target>
-
- <target name="make-dist" description="Makes a distribution file."
- depends="check-dictionary-syntax, clean, war, admin-console-dist, core-plugins-dist, compute-checksum">
- <property name="jetty.path" value="${lib}/jetty8" />
- <copy file="${jetty.path}/jetty.zip" todir="${server.dist}" />
- <loadfile property="jetty.version" srcFile="${jetty.path}/version.txt">
- <filterchain>
- <striplinebreaks />
- </filterchain>
- </loadfile>
- <echo file="${server.dist}/jetty-version.txt">${jetty.version}</echo>
- <copy file="${original.openbis.server.dist}/jetty.xml" todir="${server.dist}" />
- <move file="${admin.dist.file}" todir="${server.dist}" />
- <move file="${checksum.file}" todir="${server.dist}" />
- <copy file="${original.server.dist}/service.properties" todir="${server.dist}" />
- <copy file="${original.server.dist}/web-client.properties" todir="${server.dist}" />
- <copy file="${original.server.dist}/openbis.conf" todir="${server.dist}" />
- <copy file="${original.openbis.server.dist}/openBIS.keystore" todir="${server.dist}" />
- <copy file="${original.openbis.server.dist}/passwd.sh" todir="${server.dist}" />
- <copy file="${original.openbis.server.dist}/setup-env" todir="${server.dist}" />
- <copy file="${original.openbis.server.dist}/register-master-data.sh" todir="${server.dist}" />
- <copy file="${original.openbis.server.dist}/export-master-data.sh" todir="${server.dist}" />
- <copy file="${original.openbis.server.dist}/export-master-data.py" todir="${server.dist}" />
- <zip destfile="${server.dist}/core-plugins.zip">
- <zipfileset dir="${dist}/core-plugins" includes="**" prefix="core-plugins" erroronmissingdir="false"/>
- </zip>
- <delete dir="${dist}/gwt-unitCache"/>
- <delete dir="${dist}/core-plugins"/>
- <property name="server.dist.file" value="${server.dist}${variant}-${version.number}-r${revision.number}.zip" />
- <zip basedir="${dist}" destfile="${server.dist.file}" excludes="*.zip">
- <zipfileset file="${original.openbis.server.dist}/install.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/startup.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/shutdown.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/status.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/check.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/version.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/watchdog.sh" filemode="777" prefix="${server.folder.name}" />
- <zipfileset file="${original.openbis.server.dist}/configure.sh" filemode="777" prefix="${server.folder.name}" />
- </zip>
- <delete dir="${server.dist}" />
- </target>
-
- <!--
- // Task for continuous integration server.
- -->
- <target name="ci" depends="check-dictionary-syntax, run-two-test-suites, check-dependencies, dist" description="Task for continuous integration server." />
-
- <target name="run-two-test-suites">
- <antcall target="compile-tests"/>
- <delete dir="${output.test}" />
-
- <antcall target="_run-testng">
- <param name="test.suite" value="tests.xml" />
- <param name="failure.property" value="tests.failed" />
- </antcall>
- <antcall target="_run-testng">
- <param name="test.suite" value="tests_system_cleandb_excluding_authorization.xml" />
- <param name="failure.property" value="tests.failed" />
- </antcall>
-
- <junitreport todir="${output.test}">
- <fileset dir="${output.test}">
- <include name="*/*.xml" />
- <exclude name="old/**/*.xml"/>
- </fileset>
- <report format="noframes" todir="${output.test}" />
- </junitreport>
- <fail if="tests.failed" message="At least one test failed." />
- <antcall target="check-restrictions" />
- </target>
-
-
-
- <!--
- // Nightly build task for continuous integration server. // CR : Remove run-system-tests from the dependencies
- because the system tests do not run // correctly as a dependent of the nightly build (for some reason). // Orig:
- depends="build-common.ci, run-system-tests, dist"
- -->
- <target name="nightly-build" depends="build-common.ci, dist" description="Nightly build task for continuous integration server." />
-
- <!--
- // Compiles the javascript using GWT compiler.
- -->
- <target name="compile-javascript" depends="prepare-web-client" description="Compiles the javascript using GWT compiler.">
- <antcall target="compile-gwt-module">
- <param name="gwt.module.name" value="ch.systemsx.cisd.openbis.OpenBIS" />
- </antcall>
- </target>
-
- <!--
- // Compiles the javascript for Firefox using GWT compiler.
- -->
- <target name="compile-firefox-javascript" depends="prepare-web-client" description="Compiles the javascript using GWT compiler.">
- <antcall target="compile-gwt-module-flexible">
- <param name="gwt.module.name" value="ch.systemsx.cisd.openbis.OpenBISFirefox" />
- <param name="gwt.output.name" value="ch.systemsx.cisd.openbis.OpenBIS" />
- </antcall>
- </target>
-
- <!--
- Compiles a GWT module to Javascript. As a side effect ${webbap.dist} is deleted. Parameters: gwt.module.name: Fully
- qualified name of the module.
- -->
- <target name="compile-gwt-module">
- <antcall target="compile-gwt-module-flexible">
- <param name="gwt.module.name" value="${gwt.module.name}" />
- <param name="gwt.output.name" value="${gwt.module.name}" />
- </antcall>
- </target>
-
- <!--
- Compiles a GWT module to Javascript. As a side effect ${webbap.dist} is deleted. Parameters: gwt.module.name: Fully
- qualified name of the module.
- -->
- <target name="compile-gwt-module-flexible">
- <mkdir dir="${webapp.dist}"/>
- <delete includeEmptyDirs="true">
- <fileset dir="${webapp.dist}" excludes="*.jar"/>
- </delete>
- <echo>GWT-sources: ${gwt.sources}</echo>
- <java classpath="${ecp}:${gwt.sources}"
- classname="com.google.gwt.dev.Compiler" fork="true">
- <jvmarg value="-Xmx1024M" />
- <arg value="-war" />
- <arg value="${webapp.dist}" />
- <arg value="${gwt.module.name}" />
- <arg value="-XdisableCastChecking" />
- <arg value="-XdisableClassMetadata" />
- </java>
- <move todir="${webapp.dist}">
- <fileset dir="${webapp.dist}/${gwt.output.name}" />
- </move>
- </target>
-
- <!--
- // Creates build information.
- -->
- <target name="build-info" description="Creates build information.">
- <build-info revision="revision.number" version="version.number" clean="clean.flag" />
- <condition property="used.build.info.filename" value="${actual.build.info.filename}" else="${build.info.filename}">
- <isset property="actual.build.info.filename"/>
- </condition>
- <echo file="${classes}/${used.build.info.filename}">${version.number}:${revision.number}:${clean.flag}</echo>
- </target>
-
- <!--
- // Override 'prepare-gwt' target by writing out 'OpenBIS.gwt-without-entry-point.xml' and updating
- 'ClientPluginProvider.java'.
- -->
- <target name="prepare-gwt">
- <antcall target="do-prepare-gwt">
- <param name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBIS" />
- </antcall>
- </target>
-
- <!--
- // Override 'prepare-gwt' target by writing out 'OpenBIS.gwt-without-entry-point.xml' and updating
- 'ClientPluginProvider.java'.
- -->
- <target name="prepare-firefox-gwt">
- <antcall target="do-prepare-gwt">
- <param name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBISFirefox" />
- </antcall>
- </target>
-
- <target name="do-prepare-gwt"
- depends="prepare-web-client, compile-tests, openbis-common-common.prepare-gwt"
- description="Override 'prepare-gwt' by writing out 'OpenBIS.gwt-without-entry-point.xml' and updating 'ClientPluginProvider.java'.">
-
- <copy todir="${targets.www.web-inf}/lib">
- <fileset dir="${lib}/cisd-base">
- <include name="cisd-base.jar" />
- </fileset>
- <fileset dir="${lib}/commons-lang">
- <include name="commons-lang.jar" />
- </fileset>
- <fileset dir="${lib}/commons-logging">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/commons-io">
- <include name="commons-io.jar" />
- </fileset>
- <fileset dir="${lib}/jline">
- <include name="jline.jar" />
- </fileset>
- <fileset dir="${lib}/commons-codec">
- <include name="commons-codec.jar" />
- </fileset>
- <fileset dir="${lib}/commons-httpclient">
- <include name="commons-httpclient.jar" />
- </fileset>
- <fileset dir="${lib}/log4j">
- <include name="log4j.jar" />
- </fileset>
- <fileset dir="${lib}/spring">
- <include name="spring.jar" />
- </fileset>
- <fileset dir="${lib}/spring/webmvc">
- <include name="spring-webmvc.jar" />
- </fileset>
- <fileset dir="${lib}/activation">
- <include name="activation.jar" />
- </fileset>
- <fileset dir="${lib}/mail">
- <include name="mail.jar" />
- </fileset>
- <fileset dir="${gwt.lib}">
- <include name="gwt-servlet.jar" />
- <include name="validation-api-1.0.0.GA.jar" />
- </fileset>
- <fileset dir="${lib}/gwt-debug-panel">
- <include name="gwt-debug-panel.jar" />
- </fileset>
- <fileset dir="${lib}/gxt2.2.5">
- <include name="gxt.jar" />
- </fileset>
- <fileset dir="${lib}/commons-fileupload">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/fastutil">
- <include name="fastutil.jar" />
- </fileset>
- <fileset dir="${lib}/reflections">
- <include name="reflections.jar" />
- </fileset>
- <fileset dir="${lib}/reflections/lib">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/cisd-hotdeploy">
- <include name="cisd-hotdeploy.jar" />
- </fileset>
- <fileset dir="${lib}/postgresql">
- <include name="postgresql.jar" />
- </fileset>
- <fileset dir="${lib}/commons-dbcp">
- <include name="commons-dbcp.jar" />
- </fileset>
- <fileset dir="${lib}/commons-pool">
- <include name="commons-pool.jar" />
- </fileset>
- <fileset dir="${lib}/eodsql">
- <include name="eodsql.jar" />
- </fileset>
- <!-- Hibernate -->
- <fileset dir="${lib}/antlr">
- <include name="antlr.jar" />
- </fileset>
- <fileset dir="${lib}/commons-collections">
- <include name="commons-collections.jar" />
- </fileset>
- <fileset dir="${lib}/dom4j">
- <include name="dom4j.jar" />
- </fileset>
- <fileset dir="${lib}/hibernate-core">
- <include name="hibernate-core.jar" />
- </fileset>
- <fileset dir="${lib}/jta">
- <include name="jta.jar" />
- </fileset>
- <fileset dir="${lib}/hibernate-commons-annotations">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/ehcache">
- <include name="ehcache.jar" />
- </fileset>
- <fileset dir="${lib}/cglib">
- <include name="cglib.jar" />
- </fileset>
- <fileset dir="${lib}/hibernate-validator">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/javassist">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/slf4j">
- <include name="*.jar" />
- <exclude name="src.jar" />
- </fileset>
- <fileset dir="${lib}/slf4j/log4j12">
- <include name="*.jar" />
- <exclude name="src.jar" />
- </fileset>
- <!-- Hibernate Search -->
- <fileset dir="${lib}/hibernate-search">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/lucene">
- <include name="*.jar" />
- </fileset>
- <fileset dir="${lib}/lucene-highlighter">
- <include name="lucene-highlighter.jar" />
- </fileset>
- <fileset dir="${lib}/lucene-memory">
- <include name="lucene-memory.jar" />
- </fileset>
- <fileset dir="${lib}/lucene-queries">
- <include name="lucene-queries.jar" />
- </fileset>
- <fileset dir="${lib}/cisd-args4j">
- <include name="cisd-args4j.jar" />
- </fileset>
- <fileset dir="${lib}/jython">
- <include name="jython.jar" />
- </fileset>
- <fileset dir="${lib}/jsonrpc4j">
- <include name="jsonrpc4j.jar" />
- </fileset>
- <fileset dir="${lib}/jackson">
- <include name="jackson-annotations.jar" />
- </fileset>
- <fileset dir="${lib}/jackson">
- <include name="jackson-core.jar" />
- </fileset>
- <fileset dir="${lib}/jackson">
- <include name="jackson-databind.jar" />
- </fileset>
- </copy>
- <copy todir="${targets.www.web-inf}">
- <fileset file="../openbis/${server-resource}/bis-common.xml" includes="*.xml"/>
- </copy>
- <antcall target="prepare-gwt.copy-common-source" />
- <antcall target="prepare-gwt.copy-api-source" />
- </target>
-
- <target name="prepare-gwt.copy-common-source">
- <copy todir="${targets.www.web-inf}/classes">
- <fileset dir="../common/${sources}">
- <include name="ch/systemsx/cisd/common/shared/basic/**/*.java" />
- </fileset>
- </copy>
- </target>
-
- <target name="prepare-gwt.copy-api-source">
- <copy todir="${targets.www.web-inf}/classes">
- <fileset dir="../openbis_api/${sources}">
- <include name="ch/systemsx/cisd/openbis/generic/shared/basic/**/*.java" />
- </fileset>
- </copy>
- </target>
-
- <!--
- // Updates 'ClientPluginProvider.java' and 'OpenBIS.gwt-without-entry-point.xml' with requested plugins.
- -->
- <target name="prepare-web-client" depends="compile"
- description="Updates 'ClientPluginProvider.java' and 'OpenBIS.gwt-without-entry-point.xml' with requested plugins.">
- <java classname="ch.systemsx.cisd.openbis.generic.shared.util.WebClientFilesUpdater" classpath="${ecp}:../openbis/${sources}"
- fork="true" failonerror="true">
- <arg value="../openbis/${sources}" />
- </java>
- </target>
-
- <!--
- // Creates JAR files.
- -->
- <target name="jar" depends="compile, build-info" description="Creates project jar file.">
- <delete file="${jar.file}" />
- <recursive-jar destfile="${jar.file}">
- <fileset dir="${classes}">
- <include name="**/*.class" />
- <!-- Exclude 'service.properties' and 'log.xml' file. -->
- <exclude name="service.properties" />
- <exclude name="log.xml" />
- <include name="**/*.properties" />
- <include name="${build.info.filename}" />
- <include name="${actual.build.info.filename}" />
- </fileset>
- </recursive-jar>
- <jar update="true" destfile="${jar.file}">
- <fileset dir="../${ant.project.name}/${classes}" includes="ch/systemsx/cisd/openbis/BuildAndEnvironmentInfo.class" />
- </jar>
- <jar destfile="${admin.jar.file}">
- <zipfileset src="${jar.file}">
- <include name="ch/systemsx/cisd/common/spring/HttpInvokerUtils.class" />
- <include name="ch/systemsx/cisd/common/**/*.class" />
- <include name="ch/systemsx/cisd/openbis/common/**/*.class" />
- <include name="ch/systemsx/cisd/openbis/generic/client/console/**/*.class" />
- <include name="**/shared/I*.class" />
- <include name="**/shared/basic/dto/**/*.class" />
- <include name="**/shared/basic/*.class" />
- <include name="**/shared/dto/**/*.class" />
- <exclude name="**/shared/dto/*PE.class" />
- <include name="**/shared/authorization/annotation/*.class" />
- <include name="**/shared/authorization/ISessionProvider.class" />
- <include name="**/*BuildAndEnvironmentInfo.class" />
- <include name="*.INFO" />
- </zipfileset>
- <zipfileset src="${lib}/gwt2.4/gwt-user.jar">
- <include name="com/google/gwt/user/client/rpc/IsSerializable.class" />
- <include name="com/google/gwt/user/client/rpc/SerializableException.class" />
- </zipfileset>
- <manifest>
- <attribute name="Main-Class" value="ch.systemsx.cisd.openbis.generic.client.console.AdminConsole" />
- <attribute name="Class-Path"
- value="${admin.console}.jar cisd-base.jar commons-codec.jar
- commons-httpclient.jar commons-io.jar commons-logging.jar
- log4j.jar jline.jar spring.jar stream-supporting-httpinvoker.jar"/>
- </manifest>
- </jar>
- </target>
-
- <target name="copy-core-plugins">
- <pathconvert pathsep="," property="core-plugin-paths">
- <fileset dir="${project-path}${core-plugins.folder}" erroronmissingdir="false">
- <include name="*/${core-plugins.package.marker.file}"/>
- </fileset>
- <mapper type="regexp" from=".*/${core-plugins.folder}/(.*)/${core-plugins.package.marker.file}"
- to="\1/*/${plugin-kind}/**/*"/>
- </pathconvert>
- <echo file="${dist}/core-plugin-paths">${core-plugin-paths}</echo>
- <!-- replace ',' by newline -->
- <replace file="${dist}/core-plugin-paths">
- <replacetoken>,</replacetoken>
- <replacevalue><![CDATA[
-]]></replacevalue>
- </replace>
- <copy todir="${dist}/core-plugins">
- <fileset dir="${project-path}${core-plugins.folder}" erroronmissingdir="false"
- includesfile="${dist}/core-plugin-paths">
- <exclude name="core-plugins.properties"/>
- </fileset>
- <fileset dir="${project-path}dist/server" erroronmissingdir="false">
- <include name="core-plugins.properties"/>
- </fileset>
- </copy>
- <delete file="${dist}/core-plugin-paths"/>
- </target>
-
-
- <!--
- // Creates WAR file.
- -->
- <target name="war" depends="jar, compile-javascript" description="Creates project war file.">
- <mkdir dir="${webapp.dist.web-inf}" />
- <copy todir="${webapp.dist.web-inf}">
- <fileset dir="${application.server.resource}">
- <include name="spring-servlet.xml" />
- </fileset>
- <fileset dir="../openbis/${server-resource}">
- <include name="bis-common.xml" />
- </fileset>
- <fileset dir="../common/${server-resource}">
- <include name="web-common.xml" />
- </fileset>
- </copy>
- <!-- Create an empty 'gwt.xml' file. -->
- <echo file="${webapp.dist.web-inf}/gwt.xml" message="" />
- <mkdir dir="${server.dist}" />
- <war warfile="${webapp.file}" webxml="${application.server.resource}/web.xml">
- <fileset dir="${webapp.dist}" />
- <classes dir="../openbis/source">
- <include name="**/*.sql" />
- </classes>
- <!-- Add 'applicationContext.xml' and related files. -->
- <classes dir="../common/${sources}">
- <include name="**/*.xml" />
- </classes>
- <classes dir="${sources}">
- <include name="**/*.xml" />
- <exclude name="**/*.gwt.xml" />
- <include name="**/*.xsd" />
- </classes>
- <classes dir="${original.server.dist}">
- <include name="etc/log.xml" />
- <include name="etc/passwd" />
- <include name="etc/core-plugins.properties" />
- </classes>
- <classes dir="${classes}">
- <include name="${build.info.filename}" />
- </classes>
- <classes dir="${classes}">
- <include name="${actual.build.info.filename}" />
- </classes>
- <lib dir="${dist}">
- <include name="${jar.file.name}" />
- </lib>
- <lib dir="${lib}/cisd-base">
- <include name="cisd-base.jar" />
- </lib>
- <lib dir="${lib}/commons-lang">
- <include name="commons-lang.jar" />
- </lib>
- <lib dir="${lib}/commons-logging">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/commons-io">
- <include name="commons-io.jar" />
- </lib>
- <lib dir="${lib}/jline">
- <include name="jline.jar" />
- </lib>
- <lib dir="${lib}/commons-codec">
- <include name="commons-codec.jar" />
- </lib>
- <lib dir="${lib}/commons-httpclient">
- <include name="commons-httpclient.jar" />
- </lib>
- <lib dir="${lib}/log4j">
- <include name="log4j.jar" />
- </lib>
- <lib dir="${lib}/spring">
- <include name="spring.jar" />
- </lib>
- <lib dir="${lib}/spring/webmvc">
- <include name="spring-webmvc.jar" />
- </lib>
- <lib dir="${lib}/spring/third-party/">
- <include name="stream-supporting-httpinvoker.jar" />
- </lib>
- <lib dir="${lib}/activation">
- <include name="activation.jar" />
- </lib>
- <lib dir="${lib}/mail">
- <include name="mail.jar" />
- </lib>
- <lib dir="${gwt.lib}">
- <include name="gwt-servlet.jar" />
- <include name="validation-api-1.0.0.GA.jar" />
- </lib>
- <lib dir="${lib}/gwt-debug-panel">
- <include name="gwt-debug-panel.jar" />
- </lib>
- <lib dir="${lib}/gxt2.2.5">
- <include name="gxt.jar" />
- </lib>
- <lib dir="${lib}/commons-fileupload">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/fastutil">
- <include name="fastutil.jar" />
- </lib>
- <lib dir="${lib}/reflections">
- <include name="reflections.jar" />
- </lib>
- <lib dir="${lib}/reflections/lib">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/cisd-hotdeploy">
- <include name="cisd-hotdeploy.jar" />
- </lib>
- <!-- Excel -->
- <lib dir="${lib}/poi">
- <include name="poi.jar" />
- <include name="poi-ooxml.jar" />
- <include name="poi-ooxml-schemas.jar" />
- </lib>
- <lib dir="${lib}/poi/ooxml-lib">
- <include name="xmlbeans-2.3.0.jar" />
- <include name="geronimo-stax-api_1.0_spec-1.0.jar" />
- </lib>
- <!-- Database -->
- <lib dir="${lib}/postgresql">
- <include name="postgresql.jar" />
- </lib>
- <lib dir="${lib}/commons-dbcp">
- <include name="commons-dbcp.jar" />
- </lib>
- <lib dir="${lib}/commons-pool">
- <include name="commons-pool.jar" />
- </lib>
- <lib dir="${lib}/eodsql">
- <include name="eodsql.jar" />
- </lib>
- <!-- Hibernate -->
- <lib dir="${lib}/antlr">
- <include name="antlr.jar" />
- </lib>
- <lib dir="${lib}/commons-collections">
- <include name="commons-collections.jar" />
- </lib>
- <lib dir="${lib}/dom4j">
- <include name="dom4j.jar" />
- </lib>
- <lib dir="${lib}/hibernate-core">
- <include name="hibernate-core.jar" />
- </lib>
- <lib dir="${lib}/hibernate-jpa-2.0-api">
- <include name="hibernate-jpa-2.0-api.jar" />
- </lib>
- <lib dir="${lib}/jta">
- <include name="jta.jar" />
- </lib>
- <lib dir="${lib}/ehcache">
- <include name="ehcache.jar" />
- </lib>
- <lib dir="${lib}/cglib">
- <include name="cglib.jar" />
- </lib>
- <lib dir="${lib}/hibernate-commons-annotations">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/hibernate-validator">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/javassist">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/slf4j">
- <include name="*.jar" />
- <exclude name="src.jar" />
- </lib>
- <lib dir="${lib}/slf4j/log4j12">
- <include name="*.jar" />
- <exclude name="src.jar" />
- </lib>
- <!-- Hibernate Search -->
- <lib dir="${lib}/hibernate-search">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/lucene">
- <include name="*.jar" />
- </lib>
- <lib dir="${lib}/lucene-highlighter">
- <include name="lucene-highlighter.jar" />
- </lib>
- <lib dir="${lib}/lucene-memory">
- <include name="lucene-memory.jar" />
- </lib>
- <lib dir="${lib}/lucene-queries">
- <include name="lucene-queries.jar" />
- </lib>
- <lib dir="${lib}/cisd-args4j">
- <include name="cisd-args4j.jar" />
- </lib>
- <lib dir="${lib}/jython">
- <include name="jython.jar" />
- </lib>
- <lib dir="${lib}/jsonrpc4j">
- <include name="jsonrpc4j.jar" />
- </lib>
- <lib dir="${lib}/jackson">
- <include name="jackson-annotations.jar" />
- </lib>
- <lib dir="${lib}/jackson">
- <include name="jackson-core.jar" />
- </lib>
- <lib dir="${lib}/jackson">
- <include name="jackson-databind.jar" />
- </lib>
- </war>
- <!-- Does some cleaning. -->
- <delete file="${jar.file}" failonerror="true" />
- <delete dir="${webapp.dist}" failonerror="true" />
- </target>
-
- <!--
- // Duplicate developer database and creates dump file and index files
- -->
- <target name="dump-and-index" description="Dumps developer database and creates a Lucene index files">
- <java classpath="${eclipse.cp}" failonerror="true" fork="true" dir="." maxmemory="512m"
- classname="ch.systemsx.cisd.openbis.generic.server.dataaccess.db.IndexCreationUtil">
- <sysproperty key="log4j.configuration" file="etc/log.xml" />
- <arg value="-d" />
- <arg value="dev_indexed" />
- <arg value="${targets}/dev_indexed.sql" />
- <arg value="dev" />
- <arg value="${targets}/dev_indexed-index" />
- </java>
- </target>
-
- <!--
- // Replace developer database and index
- -->
- <target name="replace-database-and-index" description="Replaces developer database and index">
- <java classpath="${eclipse.cp}" failonerror="true" fork="true" dir="."
- classname="ch.systemsx.cisd.openbis.generic.server.dataaccess.db.DatabaseAndIndexReplacer">
- <sysproperty key="log4j.configuration" file="etc/log.xml" />
- <arg value="dev" />
- <arg value="${targets}/indices" />
- <arg value="dev_indexed" />
- <arg value="${targets}/dev_indexed-index" />
- </java>
- </target>
-
-
- <!--
- // // MODULE TEST // // Run the app with compiled javscript, but using the classes compiled by Eclipse
- -->
-
- <!--
- // // Compile Java to javscript, assuming that prepare-gwt has already been run // // Must pass in module-test.path
- and module-test.module as arguments // e.g., // <{property,param} name="module-test.path" value="openbis-test" /> //
- <{property,param} name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBIS" /> //
- -->
- <target name="compile-module-test" description="Compile the module test mode">
- <delete includeEmptyDirs="true" removeNotFollowedSymlinks="true" quiet="true">
- <fileset dir="${targets.www}/${module-test.module}" followsymlinks="false"/>
- </delete>
- <delete includeEmptyDirs="true" removeNotFollowedSymlinks="true" quiet="true">
- <fileset dir="${targets.www}/${module-test.path}" followsymlinks="false"/>
- </delete>
- <echo>GWT-sources: ${gwt.sources}</echo>
- <java classpath="${ecp}:${ecp.gwt}:${gwt.sources}"
- classname="com.google.gwt.dev.Compiler" fork="true">
- <jvmarg value="-Xmx1024M" />
- <arg value="-war" />
- <arg value="${targets.www}" />
- <arg value="${module-test.module}Safari" />
- <arg value="-draftCompile" />
- <arg value="-style" />
- <arg value="PRETTY" />
- <arg value="-logLevel" />
- <arg value="ERROR" />
- <!-- <arg value="-compileReport" /> -->
- </java>
- <move todir="${targets.www}/${module-test.path}">
- <fileset dir="${targets.www}/${module-test.module}" />
- </move>
- </target>
-
- <!--
- Run the production mode, assuming compile-module-test has already been run
- Must pass in module-test.path, module-test.module, and module-test.db-kind as arguments
- e.g.,
- <{property,param} name="module-test.path" value="openbis-test" />
- <{property,param} name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBIS" />
- -->
- <target name="run-module-test" description="Run the module test mode">
- <java failonerror="true" fork="true" classpath="${ecp}:${ecp.gwt}:${gwt.sources}" classname="com.google.gwt.dev.DevMode">
- <jvmarg value="-Xmx1024M" />
- <jvmarg value="-ea" />
- <sysproperty key="org.mortbay.util.FileResource.checkAliases" value="false"/>
- <sysproperty key="log4j.configuration" file="etc/log.xml" />
- <sysproperty key="javax.net.ssl.trustStore" file="dist/server/openBIS.keystore" />
-
- <!-- Arguments to com.google.gwt.dev.DevMode -->
- <!-- Provide two startup urls : one for the compiled version, one for the normal dev version -->
- <arg value="-startupUrl" />
- <arg value="${module-test.path}/index.html" />
- <arg value="-startupUrl" />
- <arg value="${module-test.module}/index.html" />
- <arg value="${module-test.module}" />
- <arg value="-war" />
- <arg value="targets/www" />
- <arg value="-logLevel" />
- <arg value="WARN" />
- </java>
- </target>
-
- <target name="prepare-and-run-module-test" depends="prepare-gwt, module-test" description="Prepare, compile, and run the module test mode">
- </target>
-
- <target name="module-test-no-run" description="Compile module test mode" depends="check-dictionary-syntax">
- <antcall target="compile-module-test">
- <param name="module-test.path" value="openbis-test" />
- <param name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBIS" />
- </antcall>
- </target>
-
- <target name="module-test" description="Compile and run the module test mode" depends="check-dictionary-syntax">
- <antcall target="compile-module-test">
- <param name="module-test.path" value="openbis-test" />
- <param name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBIS" />
- </antcall>
- <antcall target="run-openbis-test" />
- </target>
-
- <target name="run-openbis-test" description="Runs the openBIS test mode">
- <antcall target="run-module-test">
- <param name="module-test.path" value="openbis-test" />
- <param name="module-test.module" value="ch.systemsx.cisd.openbis.OpenBIS" />
- </antcall>
- </target>
-
- <target name="check-javascript-syntax" description="Callable task for checking that javascript syntax is correct.">
- <java failonerror="true" fork="true" jar="${rhino.lib}">
- <arg value="${javascript-file}" />
- </java>
- </target>
-
- <target name="check-dictionary-syntax" description="Parse *-dictionary.js and check that the syntax is correct.">
- <antcall target="check-javascript-syntax">
- <param name="javascript-file" value="../openbis/${sources}/ch/systemsx/cisd/openbis/public/common-dictionary.js" />
- </antcall>
- <antcall target="check-javascript-syntax">
- <param name="javascript-file"
- value="../openbis/${sources}/ch/systemsx/cisd/openbis/plugin/query/client/web/public/query-dictionary.js" />
- </antcall>
- <antcall target="check-javascript-syntax">
- <param name="javascript-file" value="../openbis/${sources}/ch/systemsx/cisd/openbis/generic/client/web/public/generic-dictionary.js" />
- </antcall>
- </target>
-</project>