diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/ISVNProjectPathProvider.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/ISVNProjectPathProvider.java index 99c69737e461b31e8b2e95428d12d174cd9a409b..b28794d41c2839029c266dfcc3a6029de0dcbbcf 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/ISVNProjectPathProvider.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/ISVNProjectPathProvider.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.ant.task.subversion; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * A provider for subversion project paths, either in a repository or a working copy. The provider diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNBranchAndTagTask.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNBranchAndTagTask.java index 9580a72c505f8e97f60b3ed9e1aa4026d6655236..e0dec4bc97fb42ba7c2417e4ac88f61de4617263 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNBranchAndTagTask.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNBranchAndTagTask.java @@ -26,7 +26,7 @@ import org.apache.tools.ant.BuildException; import org.apache.tools.ant.Task; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * An ant task that allows branching of projects with all dependent projects (using Eclipse' diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNException.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNException.java index 468134e4c3f6bcc9905f7ef9b6c3ec0f5d601ffa..b89f63e400edbc2831ba57449ebf0c7b7552e866 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNException.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNException.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.ant.task.subversion; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An exception indicating a problem performing a subversion command. diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRecursiveCheckoutTask.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRecursiveCheckoutTask.java index fba9a2a12698b1d1f579bda0ec0f1441d6216b67..7b8a513575f0e0a82a93511907ad4d8767ba0324 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRecursiveCheckoutTask.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRecursiveCheckoutTask.java @@ -29,7 +29,7 @@ import ch.rinn.restrictions.Private; import ch.systemsx.cisd.ant.common.AbstractEclipseClasspathExecutor; import ch.systemsx.cisd.ant.common.EclipseClasspathEntry; import ch.systemsx.cisd.ant.common.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * An <code>ant</code> task that allows to recursively check out a project that follows the CISD diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContext.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContext.java index e1a11477ec1dd7f08adb15c97e03f157121bb057..57407754000c72960ea6fad2b1cbfb05e6f34532 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContext.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContext.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.ant.task.subversion; import java.util.Arrays; import ch.systemsx.cisd.ant.common.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * A class for assembling and storing the subversion repository definition of a project. diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNUtilities.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNUtilities.java index 57370607c908e2f6597b104b9cc84ae0a56af0b1..6c4ad8488ca41783a6aac4a7a1b3758d75f925a4 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNUtilities.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNUtilities.java @@ -26,7 +26,7 @@ import java.util.regex.Pattern; import ch.systemsx.cisd.ant.common.StringUtils; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogLevel; import ch.systemsx.cisd.common.process.InputStreamReaderGobbler; diff --git a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNWCProjectPathProvider.java b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNWCProjectPathProvider.java index 171e3f49582ec18c77f33f9392d30544e13016f1..f1144732d5a4e70011d2e96c505c4675f418445e 100644 --- a/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNWCProjectPathProvider.java +++ b/ant_tasks/source/java/ch/systemsx/cisd/ant/task/subversion/SVNWCProjectPathProvider.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.ant.task.subversion; import java.io.File; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * A {@link ISVNProjectPathProvider} that works on a subversion working directory. diff --git a/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/GatherRevisionAndVersionTaskTest.java b/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/GatherRevisionAndVersionTaskTest.java index 315c9358e7bb358282163b5c598db44db47634a4..39cc0cbceef4ef9fed0a14cbb6b3559a486dcc5c 100644 --- a/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/GatherRevisionAndVersionTaskTest.java +++ b/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/GatherRevisionAndVersionTaskTest.java @@ -33,7 +33,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.ant.task.subversion.SVNInfoRecord.Updater; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author felmer diff --git a/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContextTest.java b/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContextTest.java index 3133d07a9e0e2a7f50d49618953f009228de1949..8b86e6b176b86d6972c44562e4f9f790d8f2a25c 100644 --- a/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContextTest.java +++ b/ant_tasks/sourceTest/java/ch/systemsx/cisd/ant/task/subversion/SVNRepositoryProjectContextTest.java @@ -28,7 +28,7 @@ import java.util.Arrays; import org.testng.annotations.Test; import ch.systemsx.cisd.ant.common.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Test cases for {@link SVNRepositoryProjectContext}. diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/DefaultSessionManager.java b/authentication/source/java/ch/systemsx/cisd/authentication/DefaultSessionManager.java index 76f19414040b19f8d05dd8086a88cdd0fd22699f..fab5a16bfafafdd1e7ef5b31e600bb38342bb5f6 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/DefaultSessionManager.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/DefaultSessionManager.java @@ -30,9 +30,9 @@ import org.apache.commons.lang.time.DateUtils; import org.apache.commons.lang.time.DurationFormatUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/ISessionManager.java b/authentication/source/java/ch/systemsx/cisd/authentication/ISessionManager.java index 74159c01d59dc529c6e68fc31611fce45251ade4..e84b60877fedca5912d4759d230693e7214578a6 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/ISessionManager.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/ISessionManager.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.authentication; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.common.server.IRemoteHostProvider; /** diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/NullAuthenticationService.java b/authentication/source/java/ch/systemsx/cisd/authentication/NullAuthenticationService.java index 96624b3337b15a4129562e4351cdc88dd775825c..dbc53147503c1bde9f71d05af0053dee50d80e52 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/NullAuthenticationService.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/NullAuthenticationService.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.authentication; import java.util.List; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An implementation of {@link IAuthenticationService} which supports as a <code>null</code> diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/crowd/CrowdAuthenticationService.java b/authentication/source/java/ch/systemsx/cisd/authentication/crowd/CrowdAuthenticationService.java index a4840e8555168a60e59bf611bcefc6535841524e..a7870206c8f43725556216e0ad40b2511244bad0 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/crowd/CrowdAuthenticationService.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/crowd/CrowdAuthenticationService.java @@ -41,8 +41,8 @@ import ch.rinn.restrictions.Private; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.Principal; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/FileAuthenticationService.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/FileAuthenticationService.java index 200b1d09d586453d4ef54c02dc11d737c26dbcdf..14afe485e08ce383c9dd76fbda23daf1d99ee61e 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/FileAuthenticationService.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/FileAuthenticationService.java @@ -21,8 +21,8 @@ import java.util.List; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An implementation of {@link IAuthenticationService} that gets the authentication information from diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/FileBasedLineStore.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/FileBasedLineStore.java index c3def7d5a6fd6cefa48db94feb8fc257df794174..08db566b5166843244d6cc3fdfb07610c6cb980b 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/FileBasedLineStore.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/FileBasedLineStore.java @@ -24,8 +24,8 @@ import java.util.List; import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/ILineStore.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/ILineStore.java index e025d3ad85315ae26100f7d53cbf38230a8852af..de6f1494861d9ab6cf120ba5303903abb8e67795 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/ILineStore.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/ILineStore.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.authentication.file; import java.util.List; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An abstraction of a file that allows to store and retrieve lines. diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/IUserStore.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/IUserStore.java index b83e61dab36352c530eb128ad80a0936ca4f6040..3bc5fb5b7d5b66ce62060d3bda5f9d73c9b3c4f6 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/IUserStore.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/IUserStore.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.authentication.file; import java.util.List; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.utilities.ISelfTestable; /** diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/LineBasedUserStore.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/LineBasedUserStore.java index 3fbe7b45202cc5887f71c05032e09c6d6bac8b78..505f86c7c82ea28d631a5a19d5caf7b6efa4768a 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/LineBasedUserStore.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/LineBasedUserStore.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.authentication.file; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; /** * A class to read and write {@link UserEntry}. diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/Parameters.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/Parameters.java index 24ceab6d6288d4e8dcf2e6b35ccbc79f333dc864..d43daab8180bdd098c3790eefbaa84d3bb6e0282 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/Parameters.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/Parameters.java @@ -24,8 +24,8 @@ import ch.systemsx.cisd.args4j.CmdLineException; import ch.systemsx.cisd.args4j.CmdLineParser; import ch.systemsx.cisd.args4j.ExampleMode; import ch.systemsx.cisd.args4j.Option; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.string.StringUtilities; import ch.systemsx.cisd.common.utilities.IExitHandler; import ch.systemsx.cisd.common.utilities.SystemExit; diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/file/PasswordEditorCommand.java b/authentication/source/java/ch/systemsx/cisd/authentication/file/PasswordEditorCommand.java index fa71a9a574b8c6a38def450e551349248dd1d35e..71f0fe5a6594b2ddcd621ba9f4d3b23b40ae701c 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/file/PasswordEditorCommand.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/file/PasswordEditorCommand.java @@ -21,8 +21,8 @@ import java.io.IOException; import jline.ConsoleReader; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * A class to create and edit password entries. diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPAuthenticationService.java b/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPAuthenticationService.java index d3b431be697018f6be7548143ab38a5979616339..158e248f2bbe08a5c64d26754a377bc6af5a35cb 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPAuthenticationService.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPAuthenticationService.java @@ -20,8 +20,8 @@ import java.util.List; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * A {@link IAuthenticationService} for LDAP servers. diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPPrincipalQuery.java b/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPPrincipalQuery.java index ec824b3984c312955e2366c0d92ab64cf3c90399..636e071d35ce3aa540c8b87e2759705ce848dcb3 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPPrincipalQuery.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/ldap/LDAPPrincipalQuery.java @@ -39,9 +39,9 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.authentication.Principal; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.utilities.ISelfTestable; diff --git a/authentication/source/java/ch/systemsx/cisd/authentication/stacked/StackedAuthenticationService.java b/authentication/source/java/ch/systemsx/cisd/authentication/stacked/StackedAuthenticationService.java index f6ff45b5e6c3b532cab8c9cfaf8a3763be311f97..14a0600152e2cbe41f61d68ea42e3acf00e18a95 100644 --- a/authentication/source/java/ch/systemsx/cisd/authentication/stacked/StackedAuthenticationService.java +++ b/authentication/source/java/ch/systemsx/cisd/authentication/stacked/StackedAuthenticationService.java @@ -21,8 +21,8 @@ import java.util.List; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An authentication service that uses a list of delegate authentication services to authenticate a diff --git a/authentication/sourceTest/java/ch/systemsx/cisd/authentication/DefaultSessionManagerTest.java b/authentication/sourceTest/java/ch/systemsx/cisd/authentication/DefaultSessionManagerTest.java index 75e31d3955e53789a7b6a8218c64eeb0170a6f57..3881425cbff9bfbefc99d660c609778603cf5f65 100644 --- a/authentication/sourceTest/java/ch/systemsx/cisd/authentication/DefaultSessionManagerTest.java +++ b/authentication/sourceTest/java/ch/systemsx/cisd/authentication/DefaultSessionManagerTest.java @@ -32,8 +32,8 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.Retry10; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.server.IRemoteHostProvider; diff --git a/authentication/sourceTest/java/ch/systemsx/cisd/authentication/file/LineBasedUserStoreTest.java b/authentication/sourceTest/java/ch/systemsx/cisd/authentication/file/LineBasedUserStoreTest.java index 1ce783146ba854b766c46a3863ed462864c67aee..585a44343238de5d5e5858a276a4bd9855942c9a 100644 --- a/authentication/sourceTest/java/ch/systemsx/cisd/authentication/file/LineBasedUserStoreTest.java +++ b/authentication/sourceTest/java/ch/systemsx/cisd/authentication/file/LineBasedUserStoreTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; /** * Test cases for the {@link LineBasedUserStore}. diff --git a/common/source/java/ch/systemsx/cisd/common/api/IncompatibleAPIVersionsException.java b/common/source/java/ch/systemsx/cisd/common/api/IncompatibleAPIVersionsException.java index 00aabab3cd1f0f4d1fec917abfdaa0fdfef4d67f..142a0e895af3c043847ddddd28d29535238ce750 100644 --- a/common/source/java/ch/systemsx/cisd/common/api/IncompatibleAPIVersionsException.java +++ b/common/source/java/ch/systemsx/cisd/common/api/IncompatibleAPIVersionsException.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.common.api; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * Exception that is thrown if the client can not talk to the server because of API version diff --git a/common/source/java/ch/systemsx/cisd/common/collection/GroupingDAG.java b/common/source/java/ch/systemsx/cisd/common/collection/GroupingDAG.java index a68d45b5039997a784b4ba08beab275c2f0dc0fa..9c692ceba39f40999df334ddf337c9c06e1b14c5 100644 --- a/common/source/java/ch/systemsx/cisd/common/collection/GroupingDAG.java +++ b/common/source/java/ch/systemsx/cisd/common/collection/GroupingDAG.java @@ -26,7 +26,7 @@ import java.util.Map; import java.util.PriorityQueue; import ch.systemsx.cisd.common.collection.GroupingDAG; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * The implementation of a DAG, that returns the group of items, where the first group includes the diff --git a/common/source/java/ch/systemsx/cisd/common/concurrent/FailureRecord.java b/common/source/java/ch/systemsx/cisd/common/concurrent/FailureRecord.java index c5e99a8bad597c8490af2272bab305bb11398846..c12dd1c2c83d0d53484541941cd1e46db8ebff09 100644 --- a/common/source/java/ch/systemsx/cisd/common/concurrent/FailureRecord.java +++ b/common/source/java/ch/systemsx/cisd/common/concurrent/FailureRecord.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.common.concurrent; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; /** diff --git a/common/source/java/ch/systemsx/cisd/common/concurrent/ITaskExecutor.java b/common/source/java/ch/systemsx/cisd/common/concurrent/ITaskExecutor.java index f562a4ab42c74999ed0fda7a7b4d458e51046839..86201b0eb293a9330efd070dba13526d55085b7c 100644 --- a/common/source/java/ch/systemsx/cisd/common/concurrent/ITaskExecutor.java +++ b/common/source/java/ch/systemsx/cisd/common/concurrent/ITaskExecutor.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.common.concurrent; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * Defines the action which should be performed on the task item. diff --git a/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutor.java b/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutor.java index 016e729a40cf89231423811ac94ef31c1aa09c34..a764e961ac07db0b0ba24108b0c046dad019bdf0 100644 --- a/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutor.java +++ b/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutor.java @@ -29,8 +29,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedWorker.java b/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedWorker.java index b8c4223761198630f44fbbe471df6b9090d36ee7..6006360dc6f4da2237271deff288987e0565a6b3 100644 --- a/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedWorker.java +++ b/common/source/java/ch/systemsx/cisd/common/concurrent/ParallelizedWorker.java @@ -24,8 +24,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/db/SQLStateUtils.java b/common/source/java/ch/systemsx/cisd/common/db/SQLStateUtils.java index 250c484b0d8751a1a4a556d5b4deb54db1efc915..3fb55baab22a263525b98312dfcbdc78ae26be28 100644 --- a/common/source/java/ch/systemsx/cisd/common/db/SQLStateUtils.java +++ b/common/source/java/ch/systemsx/cisd/common/db/SQLStateUtils.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.db; import java.sql.SQLException; -import ch.systemsx.cisd.common.exception.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; /** * Some utility methods regarding <i>SQL State</i>. diff --git a/common/source/java/ch/systemsx/cisd/common/exception/AuthorizationFailureException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/AuthorizationFailureException.java similarity index 92% rename from common/source/java/ch/systemsx/cisd/common/exception/AuthorizationFailureException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/AuthorizationFailureException.java index 8c2c8b59a53f3085731bd97c93c0f975742d2296..f606dffd0d9fbf9139f2dad741294431ba6ebb75 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/AuthorizationFailureException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/AuthorizationFailureException.java @@ -14,7 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * A {@link UserFailureException} for authorization failure. diff --git a/common/source/java/ch/systemsx/cisd/common/exception/ConfigurationFailureException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/ConfigurationFailureException.java similarity index 91% rename from common/source/java/ch/systemsx/cisd/common/exception/ConfigurationFailureException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/ConfigurationFailureException.java index cd5c741a9caa4c8937e66e824db0670387686f1f..db000648fde7a98f41950b003c621fd6b3f42dd0 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/ConfigurationFailureException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/ConfigurationFailureException.java @@ -14,7 +14,10 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * The <code>ConfigurationFailureException</code> is the super class of all exceptions that have diff --git a/common/source/java/ch/systemsx/cisd/common/exception/EnvironmentFailureException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/EnvironmentFailureException.java similarity index 92% rename from common/source/java/ch/systemsx/cisd/common/exception/EnvironmentFailureException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/EnvironmentFailureException.java index ee5ddea6812b8e84478337848236cc4ba0cfe72f..1c2c7323ec004a7a3bc62077da3c27f11571011e 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/EnvironmentFailureException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/EnvironmentFailureException.java @@ -13,7 +13,10 @@ * See the License for the specific language governing permissions and * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * The <code>EnvironmentFailureException</code> is the super class of all exceptions that have diff --git a/common/source/java/ch/systemsx/cisd/common/exception/ExceptionUtils.java b/common/source/java/ch/systemsx/cisd/common/exceptions/ExceptionUtils.java similarity index 97% rename from common/source/java/ch/systemsx/cisd/common/exception/ExceptionUtils.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/ExceptionUtils.java index 79b430aa80699a677e0e843db2ebf6c56fff7184..b22bc932dfadbb7f0e56c9ce67fd9817cff276d0 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/ExceptionUtils.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/ExceptionUtils.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import java.util.Arrays; import java.util.Collection; @@ -22,6 +22,7 @@ import java.util.LinkedHashSet; import java.util.Set; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; +import ch.systemsx.cisd.common.exceptions.MasqueradingException; import ch.systemsx.cisd.common.reflection.ClassUtils; /** @@ -35,7 +36,7 @@ public final class ExceptionUtils * Default packages (and subpackages) for not been masqueraded. */ private final static String[] ACCEPTED_PACKAGE_NAME_DEPENDENCIES = - { "java.lang", "ch.systemsx.cisd.base", "ch.systemsx.cisd.common.exception" }; + { "java.lang", "ch.systemsx.cisd.base", "ch.systemsx.cisd.common.exceptions" }; ExceptionUtils() { diff --git a/common/source/java/ch/systemsx/cisd/common/exception/ExceptionWithStatus.java b/common/source/java/ch/systemsx/cisd/common/exceptions/ExceptionWithStatus.java similarity index 92% rename from common/source/java/ch/systemsx/cisd/common/exception/ExceptionWithStatus.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/ExceptionWithStatus.java index d8f18b032f880d0685facea028d597c7394101a2..b16f3c3027883ae7985335749f66eaefe3042787 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/ExceptionWithStatus.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/ExceptionWithStatus.java @@ -14,7 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.Status; /** * @author Franz-Josef Elmer diff --git a/common/source/java/ch/systemsx/cisd/common/exception/FileExistsException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/FileExistsException.java similarity index 90% rename from common/source/java/ch/systemsx/cisd/common/exception/FileExistsException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/FileExistsException.java index f04cce36c8aa06223c54279f0b583c42bad159da..94acf7e6fdf6584dc70bb6085858c363aee90db2 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/FileExistsException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/FileExistsException.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import java.io.File; import java.io.IOException; diff --git a/common/source/java/ch/systemsx/cisd/common/exception/HighLevelException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/HighLevelException.java similarity index 95% rename from common/source/java/ch/systemsx/cisd/common/exception/HighLevelException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/HighLevelException.java index 63666595c9ad3f0241add8c0ee83c78fb9918701..54ce26e2d17594ffc83032cd2fc74bec74a544cd 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/HighLevelException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/HighLevelException.java @@ -14,7 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * An exception that is "high-level" in the sense that we have a pretty good understanding what the diff --git a/common/source/java/ch/systemsx/cisd/common/exception/InternalErr.java b/common/source/java/ch/systemsx/cisd/common/exceptions/InternalErr.java similarity index 95% rename from common/source/java/ch/systemsx/cisd/common/exception/InternalErr.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/InternalErr.java index 3ae8f23d316b6268ad718fcbc33ae66a10065ecd..0deb6569fa1e00cc70ebf4a44207575c7de04dd8 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/InternalErr.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/InternalErr.java @@ -14,7 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.InternalErr; /** * Exception representing internal error in the program caused by programmer error. It should never diff --git a/common/source/java/ch/systemsx/cisd/common/exception/InvalidAuthenticationException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/InvalidAuthenticationException.java similarity index 90% rename from common/source/java/ch/systemsx/cisd/common/exception/InvalidAuthenticationException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/InvalidAuthenticationException.java index d1962c8a4f4c0ef13a0090b0678f4ad5822e9ba1..11707265006df9da82274c87750d64c5d1a1a383 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/InvalidAuthenticationException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/InvalidAuthenticationException.java @@ -14,7 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * Exception to be thrown when authentication of a service at another service fails. diff --git a/common/source/java/ch/systemsx/cisd/common/exception/InvalidExternalDataException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/InvalidExternalDataException.java similarity index 91% rename from common/source/java/ch/systemsx/cisd/common/exception/InvalidExternalDataException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/InvalidExternalDataException.java index 14a2c22dc425b02144aecee2e9e7daf8fad46eca..689f08109f35fa91c6bb196eb8652703b439bbfa 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/InvalidExternalDataException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/InvalidExternalDataException.java @@ -14,7 +14,10 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.InvalidExternalDataException; /** * Data provided to the system from another system is invalid. This class is supposed to be used in diff --git a/common/source/java/ch/systemsx/cisd/common/exception/InvalidSessionException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/InvalidSessionException.java similarity index 91% rename from common/source/java/ch/systemsx/cisd/common/exception/InvalidSessionException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/InvalidSessionException.java index 02448fa4a8293f12ae4fb62beccbde75b750e002..5b6b5b52356814717a1548176ee11994e0a411d3 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/InvalidSessionException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/InvalidSessionException.java @@ -14,8 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.exception.IOptionalStackTraceLoggingException; /** diff --git a/common/source/java/ch/systemsx/cisd/common/exception/MasqueradingException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/MasqueradingException.java similarity index 97% rename from common/source/java/ch/systemsx/cisd/common/exception/MasqueradingException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/MasqueradingException.java index a5366c8d41dad346e9f0af9371942cc2e21d8c1b..c9402fee69e936e3e6022901425ee7ae79438c5d 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/MasqueradingException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/MasqueradingException.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; /** * A <code>RuntimeException</code> extension which almost clones given <var>rootException</var> diff --git a/common/source/java/ch/systemsx/cisd/common/exception/NotImplementedException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/NotImplementedException.java similarity index 98% rename from common/source/java/ch/systemsx/cisd/common/exception/NotImplementedException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/NotImplementedException.java index 9e2a2606c65a9d6b990848f1a2912649dd3a8c77..c48393843d2474682461a6b5da0d58e55e4ca076 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/NotImplementedException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/NotImplementedException.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import java.io.Serializable; diff --git a/common/source/java/ch/systemsx/cisd/common/exception/Status.java b/common/source/java/ch/systemsx/cisd/common/exceptions/Status.java similarity index 97% rename from common/source/java/ch/systemsx/cisd/common/exception/Status.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/Status.java index 9f885709f75368b438c5ef81927da179ffe94ed6..2a58e71cce8524d8d6ca9152039db2f045dd73b9 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/Status.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/Status.java @@ -13,11 +13,14 @@ * See the License for the specific language governing permissions and * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import org.apache.commons.lang.ObjectUtils; import org.apache.commons.lang.StringUtils; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; + /** * A class that holds the information about the status of an operation. To be used whenever a * failure of an operation is signalled back via a return value rather than an exception. diff --git a/common/source/java/ch/systemsx/cisd/common/exception/StatusFlag.java b/common/source/java/ch/systemsx/cisd/common/exceptions/StatusFlag.java similarity index 95% rename from common/source/java/ch/systemsx/cisd/common/exception/StatusFlag.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/StatusFlag.java index 71d51a0fb17dfd9652bae611eae13398f5a02663..bcf0888fe36c8da065495c4324b748dafe3a069c 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/StatusFlag.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/StatusFlag.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; /** * The status of an operation. To be used whenever a failure of an operation is signaled back via a diff --git a/common/source/java/ch/systemsx/cisd/common/exception/StatusWithResult.java b/common/source/java/ch/systemsx/cisd/common/exceptions/StatusWithResult.java similarity index 95% rename from common/source/java/ch/systemsx/cisd/common/exception/StatusWithResult.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/StatusWithResult.java index 71527f497c594762b5e72138f4a361487482eb6f..4c0fbb1ed67e7da5f003b54e7b14d7fc4b53b676 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/StatusWithResult.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/StatusWithResult.java @@ -14,12 +14,16 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import org.apache.commons.lang.ObjectUtils; import org.apache.commons.lang.StringUtils; import org.apache.commons.lang.builder.HashCodeBuilder; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; + /** * A {@link Status} that can also hold a result. * diff --git a/common/source/java/ch/systemsx/cisd/common/exception/SystemExitException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/SystemExitException.java similarity index 95% rename from common/source/java/ch/systemsx/cisd/common/exception/SystemExitException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/SystemExitException.java index 488f903cb13c06dbd4e26ef34705ec41d0ebc177..c8a594a1e6f34e412cd83349542ab22bef4db428 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/SystemExitException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/SystemExitException.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import ch.systemsx.cisd.common.utilities.SystemExit; diff --git a/common/source/java/ch/systemsx/cisd/common/exception/UnknownLastChangedException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/UnknownLastChangedException.java similarity index 89% rename from common/source/java/ch/systemsx/cisd/common/exception/UnknownLastChangedException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/UnknownLastChangedException.java index fef4995c1f3d4a620f881d4264653d5c136e2e60..f8ed7d7ec432b0638335c191e41709434e61d3ec 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/UnknownLastChangedException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/UnknownLastChangedException.java @@ -14,7 +14,9 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * Used to signal the error of getting last modification time of a store item diff --git a/common/source/java/ch/systemsx/cisd/common/exception/UserFailureException.java b/common/source/java/ch/systemsx/cisd/common/exceptions/UserFailureException.java similarity index 91% rename from common/source/java/ch/systemsx/cisd/common/exception/UserFailureException.java rename to common/source/java/ch/systemsx/cisd/common/exceptions/UserFailureException.java index ddfa37089bc7615d3b05f5c490b3accf27d1b80a..e5b26de5027a73aca36fd2d44c9b03bcea988481 100644 --- a/common/source/java/ch/systemsx/cisd/common/exception/UserFailureException.java +++ b/common/source/java/ch/systemsx/cisd/common/exceptions/UserFailureException.java @@ -14,7 +14,10 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; + +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * The <code>UserFailureException</code> is the super class of all exceptions that have their diff --git a/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractExecutableFileConverter.java b/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractExecutableFileConverter.java index e419d382fdf1af7ed6193995c5659fe7f3bda400..fa43b22f4c83106a7cb0cf65b29d55387d84448b 100644 --- a/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractExecutableFileConverter.java +++ b/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractExecutableFileConverter.java @@ -23,8 +23,8 @@ import java.util.List; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.process.ProcessExecutionHelper; import ch.systemsx.cisd.common.process.ProcessResult; diff --git a/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractImageMagickConvertImageFileConverter.java b/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractImageMagickConvertImageFileConverter.java index 3aeff63e6144984dba0a4b817c6f23d3ab19cf15..2b5468b9f172536ede30307c73234d989a12bf58 100644 --- a/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractImageMagickConvertImageFileConverter.java +++ b/common/source/java/ch/systemsx/cisd/common/fileconverter/AbstractImageMagickConvertImageFileConverter.java @@ -20,8 +20,8 @@ import java.util.Collections; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.process.ProcessExecutionHelper; import ch.systemsx.cisd.common.process.ProcessResult; diff --git a/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConversionTaskExecutor.java b/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConversionTaskExecutor.java index 311e2a52668e066e28e1c35e4029830eb405504a..151193e82ee03ecbc51510cf9fbe7cf0b5f6d162 100644 --- a/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConversionTaskExecutor.java +++ b/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConversionTaskExecutor.java @@ -22,7 +22,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.concurrent.ITaskExecutor; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConverter.java b/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConverter.java index 3fd84a0172a6796eb83b786a673f4348733bad24..5ad5d995dacaa44726c0aeb18b22e636f7ecdf94 100644 --- a/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConverter.java +++ b/common/source/java/ch/systemsx/cisd/common/fileconverter/FileConverter.java @@ -28,7 +28,7 @@ import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.common.concurrent.FailureRecord; import ch.systemsx.cisd.common.concurrent.ITaskExecutor; import ch.systemsx.cisd.common.concurrent.ParallelizedExecutor; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/common/source/java/ch/systemsx/cisd/common/fileconverter/Tiff2PngConversionStrategy.java b/common/source/java/ch/systemsx/cisd/common/fileconverter/Tiff2PngConversionStrategy.java index d4d20a4f926005a16883447f24054107e1ee4cba..ef27d3d480f806ef7f5989d20bc76bef60ff844d 100644 --- a/common/source/java/ch/systemsx/cisd/common/fileconverter/Tiff2PngConversionStrategy.java +++ b/common/source/java/ch/systemsx/cisd/common/fileconverter/Tiff2PngConversionStrategy.java @@ -20,7 +20,7 @@ import java.io.File; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An {@link IFileConversionStrategy} for tiff-to-png conversions. diff --git a/common/source/java/ch/systemsx/cisd/common/fileconverter/TiffCompressionStrategy.java b/common/source/java/ch/systemsx/cisd/common/fileconverter/TiffCompressionStrategy.java index 0f8719d6015cfd91ed1e8a466f45392294fcba90..c6c6845e79d57a64f4420e50a8ba77e4290597ea 100644 --- a/common/source/java/ch/systemsx/cisd/common/fileconverter/TiffCompressionStrategy.java +++ b/common/source/java/ch/systemsx/cisd/common/fileconverter/TiffCompressionStrategy.java @@ -20,7 +20,7 @@ import java.io.File; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * The {@link IFileConversionStrategy} for tiff compressions. diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/AbstractCopyActivitySensor.java b/common/source/java/ch/systemsx/cisd/common/filesystem/AbstractCopyActivitySensor.java index b7882c711fbfc8dcb639b3eb14183e5a665aa550..a59c5d57093465d6f5c8eb633228815e52836ae5 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/AbstractCopyActivitySensor.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/AbstractCopyActivitySensor.java @@ -20,8 +20,8 @@ import org.apache.commons.lang.time.DurationFormatUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IDescribingActivitySensor; -import ch.systemsx.cisd.common.exception.StatusFlag; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.StatusFlag; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; /** * A super class for {@link IDescribingActivitySensor}s that sense changes in some sort of copy diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/AssertionCatchingImmutableCopierWrapper.java b/common/source/java/ch/systemsx/cisd/common/filesystem/AssertionCatchingImmutableCopierWrapper.java index e6a073d76986cb6a09c557f59761278c4f4b6e44..2b04e08a57bf2fda085399375701e2c4724b9490 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/AssertionCatchingImmutableCopierWrapper.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/AssertionCatchingImmutableCopierWrapper.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.filesystem; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * A wrapper on an {@link IImmutableCopier} that catches assertions and returns a failure status if diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningHandlerInterceptor.java b/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningHandlerInterceptor.java index 67b827b6d9885c97f9cd7901f142a35b045d9fc3..130f5e35b8076b7cda213416a7f9a5d44ff0c17c 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningHandlerInterceptor.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningHandlerInterceptor.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.common.filesystem; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.DirectoryScanningTimerTask.IScannedStore; /** diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningTimerTask.java b/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningTimerTask.java index 6b6150f8a70c4dd44341b7c2fc2a6f099f090dd5..0108dd39dd26b34f4259eac3756205e41b500b99 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningTimerTask.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/DirectoryScanningTimerTask.java @@ -38,7 +38,7 @@ import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.concurrent.ITimerTaskStatusProvider; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.IDirectoryScanningHandler.HandleInstruction; import ch.systemsx.cisd.common.filesystem.IDirectoryScanningHandler.HandleInstructionFlag; import ch.systemsx.cisd.common.logging.ConditionalNotificationLogger; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/FastHardLinkMaker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/FastHardLinkMaker.java index f16c85ca4506949cc4143ea975277300ba3dad16..76ba37ac94800823c647375cb3c27a623426b96e 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/FastHardLinkMaker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/FastHardLinkMaker.java @@ -24,7 +24,7 @@ import org.apache.commons.io.FileCopyUtils; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.unix.Unix; import ch.systemsx.cisd.common.concurrent.MonitoringProxy; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.time.TimingParameters; /** diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/FastRecursiveHardLinkMaker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/FastRecursiveHardLinkMaker.java index 359d25c27ff5846cbfbac60a1abc707d87c41909..3d45ed8e580eca9898a9b59228f5daedd44325e8 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/FastRecursiveHardLinkMaker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/FastRecursiveHardLinkMaker.java @@ -22,8 +22,8 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.rsync.RsyncBasedRecursiveHardLinkMaker; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/FaultyPathDirectoryScanningHandler.java b/common/source/java/ch/systemsx/cisd/common/filesystem/FaultyPathDirectoryScanningHandler.java index 79d75da7ee133556f25b763e600bcff6ccecb2cc..400af7feb236d5b2b53a1cf4ae42d5e4399b4b22 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/FaultyPathDirectoryScanningHandler.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/FaultyPathDirectoryScanningHandler.java @@ -24,7 +24,7 @@ import java.util.Set; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.DirectoryScanningTimerTask.IScannedStore; import ch.systemsx.cisd.common.io.CollectionIO; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/FileOperations.java b/common/source/java/ch/systemsx/cisd/common/filesystem/FileOperations.java index 05934efb59bd60751ba68cb3c609eff418fda2a5..b895bbb2ab23ab3f44c5dcd1cdda08d6145d4c04 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/FileOperations.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/FileOperations.java @@ -46,7 +46,7 @@ import ch.systemsx.cisd.base.io.IOutputStream; import ch.systemsx.cisd.common.concurrent.IActivityObserver; import ch.systemsx.cisd.common.concurrent.MonitoringProxy; import ch.systemsx.cisd.common.concurrent.RecordingActivityObserverSensor; -import ch.systemsx.cisd.common.exception.UnknownLastChangedException; +import ch.systemsx.cisd.common.exceptions.UnknownLastChangedException; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/FileUtilities.java b/common/source/java/ch/systemsx/cisd/common/filesystem/FileUtilities.java index 444b0fe561ca19c595c76125f633e87281bb32a3..f75f651442f8e2b9d3c3640da7061d245decc976 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/FileUtilities.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/FileUtilities.java @@ -59,11 +59,11 @@ import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.concurrent.IActivityObserver; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IDescribingActivitySensor; import ch.systemsx.cisd.common.concurrent.RecordingActivityObserverSensor; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.FileExistsException; -import ch.systemsx.cisd.common.exception.UnknownLastChangedException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.FileExistsException; +import ch.systemsx.cisd.common.exceptions.UnknownLastChangedException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogLevel; import ch.systemsx.cisd.common.parser.Line; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/HardLinkMaker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/HardLinkMaker.java index 900df11147d37cd3e715c00222733601001076ae..c5c762f03107b630bd326b5f77893a5095645a6d 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/HardLinkMaker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/HardLinkMaker.java @@ -28,7 +28,7 @@ import org.springframework.util.FileCopyUtils; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.process.CallableExecutor; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryImmutableCopier.java b/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryImmutableCopier.java index e858748c99299a38d76e681b2f66d101fe840d1a..32fd72aa2cfa5b5f82e039143904de7e58beadc6 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryImmutableCopier.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryImmutableCopier.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.filesystem; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * A role which can perform an immutable copy of a directory. <i>Immutable</i> here means, that none diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryScanningHandler.java b/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryScanningHandler.java index d2996f3ccbeeed7e7762c1892ca4514fa68b9895..3f8c4f264d3b5ac79f5e9eaaed6a149b44b45845 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryScanningHandler.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/IDirectoryScanningHandler.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.common.filesystem; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.DirectoryScanningTimerTask.IScannedStore; /** diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/IFileImmutableCopier.java b/common/source/java/ch/systemsx/cisd/common/filesystem/IFileImmutableCopier.java index 1fda6fce97a2f13e1aeabbd8412fc5cdec900ef8..0e84077bfb7a20664edbd9093b7bc36ba7f540e5 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/IFileImmutableCopier.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/IFileImmutableCopier.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.filesystem; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/IFileOperations.java b/common/source/java/ch/systemsx/cisd/common/filesystem/IFileOperations.java index e4ccc7ed2f4ad6ef6866174f3d0698132be7a481..8684ddf516e829b152191794e3e386a6a2afce4f 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/IFileOperations.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/IFileOperations.java @@ -28,7 +28,7 @@ import org.apache.commons.io.FileSystemUtils; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.io.IInputStream; import ch.systemsx.cisd.base.io.IOutputStream; -import ch.systemsx.cisd.common.exception.UnknownLastChangedException; +import ch.systemsx.cisd.common.exceptions.UnknownLastChangedException; /** * Operations on {@link File} that are good to monitor when being performed on remote file systems diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/IImmutableCopier.java b/common/source/java/ch/systemsx/cisd/common/filesystem/IImmutableCopier.java index be76b2637dc07d03fbb187fc39c1ad222d700bd6..3cbf09c79754738ade595c53fe1473b4dfd1ee19 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/IImmutableCopier.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/IImmutableCopier.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.filesystem; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * A role which can perform an immutable copy of a file or directory. <i>Immutable</i> here means, diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/ILastModificationChecker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/ILastModificationChecker.java index 61de9621ef9e32a179066dc5715cadfe4fe06473..86c14bd27b22b297e2ef79990cb9b1066f10d190 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/ILastModificationChecker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/ILastModificationChecker.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.common.filesystem; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; public interface ILastModificationChecker { diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/IPathCopier.java b/common/source/java/ch/systemsx/cisd/common/filesystem/IPathCopier.java index e6a3541e48aef97533258d20c1eaecf774f6d222..669533a56e2a79eb08445d554a75eb09d1685992 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/IPathCopier.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/IPathCopier.java @@ -20,7 +20,7 @@ import java.io.File; import ch.systemsx.cisd.common.action.ITerminable; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.utilities.ISelfTestable; /** diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/LastModificationChecker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/LastModificationChecker.java index f869730a8b8ab06fefa3b0a60e6d3a630fcc7775..b4fc3ba04d4623cd0533ee8f0c4ab7f354507135 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/LastModificationChecker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/LastModificationChecker.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.common.filesystem; import java.io.File; -import ch.systemsx.cisd.common.exception.StatusWithResult; -import ch.systemsx.cisd.common.exception.UnknownLastChangedException; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.UnknownLastChangedException; /** * @author Tomasz Pylak diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrepender.java b/common/source/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrepender.java index 1494584a995eaeb96e704f20ec15c1aa1802062c..59f0c2bef432cf8e43710a88909e85c7abb4e756 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrepender.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrepender.java @@ -21,7 +21,7 @@ import java.io.File; import org.apache.commons.io.FilenameUtils; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; /** * Class which adds a prefix to a path. Which prefix is added depends on whether the path starts diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilter.java b/common/source/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilter.java index 1fecea92747251290f6895d85467c47fa1c16b06..f20ccc344617cafe6104a2ea4deb9a2c57d1cd0c 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilter.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilter.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.logging.ConditionalNotificationLogger; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/RecursiveHardLinkMaker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/RecursiveHardLinkMaker.java index 950c6964ba5d6797d07fc94aade292a0eff442f8..ecb947a690d10fe7ecfbd5ef394e04463a81f27b 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/RecursiveHardLinkMaker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/RecursiveHardLinkMaker.java @@ -22,7 +22,7 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/RemoteDirectoryCopyActivitySensor.java b/common/source/java/ch/systemsx/cisd/common/filesystem/RemoteDirectoryCopyActivitySensor.java index 78ceba50f976e52407e56d4dab37ce7454ec5cd7..d8e9fe0f4e938fbd84d3f32cd1771d42fee85bac 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/RemoteDirectoryCopyActivitySensor.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/RemoteDirectoryCopyActivitySensor.java @@ -21,8 +21,8 @@ import java.io.File; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IDescribingActivitySensor; -import ch.systemsx.cisd.common.exception.StatusWithResult; -import ch.systemsx.cisd.common.exception.UnknownLastChangedException; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.UnknownLastChangedException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HighwaterMarkWatcher.java b/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HighwaterMarkWatcher.java index ac76835670f420d4bf0d8180ae3de2c203f25679..16069ed9b0f28c83352e2973d38030055a7514b0 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HighwaterMarkWatcher.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HighwaterMarkWatcher.java @@ -28,7 +28,7 @@ import org.apache.commons.io.FileSystemUtils; import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMark.java b/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMark.java index 6bd90a231e4531c2b23130c3ebbaf3b340b8a0d2..b5b136ea24c9160f1b54682658e9aaf20bedc133 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMark.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMark.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncBasedRecursiveHardLinkMaker.java b/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncBasedRecursiveHardLinkMaker.java index 07124d8f7422720c1d8a3c6e674d374809446da4..f962502ea7f36ab10bb8351824176adb49720a67 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncBasedRecursiveHardLinkMaker.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncBasedRecursiveHardLinkMaker.java @@ -24,8 +24,8 @@ import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; import ch.systemsx.cisd.common.concurrent.InactivityMonitor; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IInactivityObserver; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.CopyModeExisting; import ch.systemsx.cisd.common.filesystem.IDirectoryImmutableCopier; import ch.systemsx.cisd.common.filesystem.RemoteDirectoryCopyActivitySensor; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopier.java b/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopier.java index 1b83803799d2e87a3ef4c33e60c4852a1d0f1ea6..b7cd256231e2a405a61700688cf6cda1e930a72b 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopier.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopier.java @@ -33,9 +33,9 @@ import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.action.ITerminable; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.common.filesystem.CopyModeExisting; import ch.systemsx.cisd.common.filesystem.IDirectoryImmutableCopier; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncExitValueTranslator.java b/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncExitValueTranslator.java index dc01a6491dab912b5f56420ca7b452a2f9e52c60..748860de3144113ce453cdcb13817683e41bc816 100644 --- a/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncExitValueTranslator.java +++ b/common/source/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncExitValueTranslator.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.common.filesystem.rsync; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.StatusFlag; /** * A class that the return value of the <a href="http://rsync.samba.org">rsync</a> program into a diff --git a/common/source/java/ch/systemsx/cisd/common/io/PropertyIOUtils.java b/common/source/java/ch/systemsx/cisd/common/io/PropertyIOUtils.java index f32ec777ba534b7a810f1970e8e3c2f2c105cd5d..19af7e179b4cd1426ef9c0f3668b7a598e2f516a 100644 --- a/common/source/java/ch/systemsx/cisd/common/io/PropertyIOUtils.java +++ b/common/source/java/ch/systemsx/cisd/common/io/PropertyIOUtils.java @@ -26,8 +26,8 @@ import java.util.Properties; import org.apache.commons.io.IOUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/common/source/java/ch/systemsx/cisd/common/jython/evaluator/EvaluatorException.java b/common/source/java/ch/systemsx/cisd/common/jython/evaluator/EvaluatorException.java index 2ae07aceccb064c255caff463b04428630270f97..2b86e6be51187cc83fe973c503918d70c0d624d5 100644 --- a/common/source/java/ch/systemsx/cisd/common/jython/evaluator/EvaluatorException.java +++ b/common/source/java/ch/systemsx/cisd/common/jython/evaluator/EvaluatorException.java @@ -15,7 +15,7 @@ */ package ch.systemsx.cisd.common.jython.evaluator; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * An exception which occurs when {@link Evaluator} evaluates an expression. diff --git a/common/source/java/ch/systemsx/cisd/common/mail/IMailClient.java b/common/source/java/ch/systemsx/cisd/common/mail/IMailClient.java index 76cef4c684639aacb4eabd5cc4882105760e8607..6d0a1886b4848d28e4e83127c7d01e650baaf7c0 100644 --- a/common/source/java/ch/systemsx/cisd/common/mail/IMailClient.java +++ b/common/source/java/ch/systemsx/cisd/common/mail/IMailClient.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.mail; import javax.activation.DataHandler; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * Implementations of this interface are able to send email. diff --git a/common/source/java/ch/systemsx/cisd/common/mail/MailClient.java b/common/source/java/ch/systemsx/cisd/common/mail/MailClient.java index 829b19403a4c7ea19fb5067312f7b69eb28891a3..df83a40cf1b3a735d93a584b8d8d98fe59651465 100644 --- a/common/source/java/ch/systemsx/cisd/common/mail/MailClient.java +++ b/common/source/java/ch/systemsx/cisd/common/mail/MailClient.java @@ -44,7 +44,7 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenancePlugin.java b/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenancePlugin.java index d7596d6caf02bea7bd624967affe849b6cddeee7..d6b07dd6eabf4f1487ac4f6c1d751f68e20aab1e 100644 --- a/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenancePlugin.java +++ b/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenancePlugin.java @@ -10,7 +10,7 @@ import java.util.concurrent.locks.ReentrantLock; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.reflection.ClassUtils; diff --git a/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenanceTaskParameters.java b/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenanceTaskParameters.java index b2b470aab2b828c93846197b981ec6bf8a1a62aa..9eb417e3fe65b17e99d591de5cc4a7f1c8135f3c 100644 --- a/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenanceTaskParameters.java +++ b/common/source/java/ch/systemsx/cisd/common/maintenance/MaintenanceTaskParameters.java @@ -25,7 +25,7 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; /** diff --git a/common/source/java/ch/systemsx/cisd/common/parser/ExcelFileLoader.java b/common/source/java/ch/systemsx/cisd/common/parser/ExcelFileLoader.java index cede5a7c7e0e4da9ac8523c56798314587db4c23..a5667501992954101cb433b92713a81ffb15c7ad 100644 --- a/common/source/java/ch/systemsx/cisd/common/parser/ExcelFileLoader.java +++ b/common/source/java/ch/systemsx/cisd/common/parser/ExcelFileLoader.java @@ -30,7 +30,7 @@ import org.apache.poi.ss.usermodel.Cell; import org.apache.poi.ss.usermodel.Row; import org.apache.poi.ss.usermodel.Sheet; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.common.parser.filter.AlwaysAcceptLineFilter; import ch.systemsx.cisd.common.parser.filter.ILineFilter; diff --git a/common/source/java/ch/systemsx/cisd/common/parser/ParserException.java b/common/source/java/ch/systemsx/cisd/common/parser/ParserException.java index b6dfc694a5f8cfe6136254b134c7a4b03ab8cab6..ea73a37fc90fcdd711ecff1a1f8561f63e259660 100644 --- a/common/source/java/ch/systemsx/cisd/common/parser/ParserException.java +++ b/common/source/java/ch/systemsx/cisd/common/parser/ParserException.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.common.parser; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * A top level exception for the parser. diff --git a/common/source/java/ch/systemsx/cisd/common/parser/ParsingException.java b/common/source/java/ch/systemsx/cisd/common/parser/ParsingException.java index 6738ab50fd8c4ca772458db168fd6f1b94227932..c320fa4609a2306af59e99277e1e1965981aacda 100644 --- a/common/source/java/ch/systemsx/cisd/common/parser/ParsingException.java +++ b/common/source/java/ch/systemsx/cisd/common/parser/ParsingException.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.common.parser; import java.util.Arrays; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; /** * Signals that an error has been unexpectedly reached while parsing. diff --git a/common/source/java/ch/systemsx/cisd/common/parser/TabFileLoader.java b/common/source/java/ch/systemsx/cisd/common/parser/TabFileLoader.java index a499256c901f9b79ddeb920cd2d724ba3e0d1810..c84860798703b68f0146b576d22c7d337fbee783 100644 --- a/common/source/java/ch/systemsx/cisd/common/parser/TabFileLoader.java +++ b/common/source/java/ch/systemsx/cisd/common/parser/TabFileLoader.java @@ -38,7 +38,7 @@ import org.apache.commons.io.LineIterator; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.common.parser.DefaultLineTokenizer.PropertyKey; import ch.systemsx.cisd.common.parser.filter.AlwaysAcceptLineFilter; import ch.systemsx.cisd.common.parser.filter.ILineFilter; diff --git a/common/source/java/ch/systemsx/cisd/common/process/InputStreamReaderGobbler.java b/common/source/java/ch/systemsx/cisd/common/process/InputStreamReaderGobbler.java index 855bdd1b538788043174c4e3398606d23b3b557b..9b8f8cdd69fb4dfddb2b8f735ef5fe943fc56532 100644 --- a/common/source/java/ch/systemsx/cisd/common/process/InputStreamReaderGobbler.java +++ b/common/source/java/ch/systemsx/cisd/common/process/InputStreamReaderGobbler.java @@ -24,7 +24,7 @@ import java.util.ArrayList; import java.util.List; import java.util.concurrent.Semaphore; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * This class uses an internal worker thread to constantly consume input from specified diff --git a/common/source/java/ch/systemsx/cisd/common/process/ProcessResult.java b/common/source/java/ch/systemsx/cisd/common/process/ProcessResult.java index 5985e12d8177c64ec13053ed141c79debfff1cc9..c23ff25c2ce64343bad507ae8dce5decf6bf51d5 100644 --- a/common/source/java/ch/systemsx/cisd/common/process/ProcessResult.java +++ b/common/source/java/ch/systemsx/cisd/common/process/ProcessResult.java @@ -26,7 +26,7 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.concurrent.ExecutionResult; import ch.systemsx.cisd.common.concurrent.ExecutionStatus; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * Class that keeps around the result of running an Operating System process. diff --git a/common/source/java/ch/systemsx/cisd/common/properties/PropertyParametersUtil.java b/common/source/java/ch/systemsx/cisd/common/properties/PropertyParametersUtil.java index 78b45c78bcaafd7f147fda6f363e54c19d5c3278..a8b1176f0f9d17238b432a539cfeeb6bdd5acf79 100644 --- a/common/source/java/ch/systemsx/cisd/common/properties/PropertyParametersUtil.java +++ b/common/source/java/ch/systemsx/cisd/common/properties/PropertyParametersUtil.java @@ -20,7 +20,7 @@ import java.util.HashSet; import java.util.Properties; import java.util.Set; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; /** * Utility class to parse properties. diff --git a/common/source/java/ch/systemsx/cisd/common/properties/PropertyUtils.java b/common/source/java/ch/systemsx/cisd/common/properties/PropertyUtils.java index c14c5879c45b74b8116b279f44968d3b9ffdbec8..e55af0a04b02d63fbd01f2535d58bf6621e6a86e 100644 --- a/common/source/java/ch/systemsx/cisd/common/properties/PropertyUtils.java +++ b/common/source/java/ch/systemsx/cisd/common/properties/PropertyUtils.java @@ -27,7 +27,7 @@ import org.apache.commons.lang.StringUtils; import org.apache.commons.lang.math.NumberUtils; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogLevel; diff --git a/common/source/java/ch/systemsx/cisd/common/spring/ServiceExceptionTranslator.java b/common/source/java/ch/systemsx/cisd/common/spring/ServiceExceptionTranslator.java index b0ca7f4d61892267b7893578d0022758fdc63d3f..97f3de131ea131de3f153bf10596f30cf059e1df 100644 --- a/common/source/java/ch/systemsx/cisd/common/spring/ServiceExceptionTranslator.java +++ b/common/source/java/ch/systemsx/cisd/common/spring/ServiceExceptionTranslator.java @@ -21,7 +21,7 @@ import java.util.List; import org.springframework.aop.ThrowsAdvice; -import ch.systemsx.cisd.common.exception.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; /** * A <code>ThrowsAdvice</code> implementation which remove proprietary/external libraries specific diff --git a/common/source/java/ch/systemsx/cisd/common/string/UnicodeUtils.java b/common/source/java/ch/systemsx/cisd/common/string/UnicodeUtils.java index 21754b086c34bbb6baeeb37368a232469db9fea6..cc53f362027e33e3120b97c8e3e4102afa15ec25 100644 --- a/common/source/java/ch/systemsx/cisd/common/string/UnicodeUtils.java +++ b/common/source/java/ch/systemsx/cisd/common/string/UnicodeUtils.java @@ -22,7 +22,7 @@ import java.io.Reader; import java.io.UnsupportedEncodingException; import java.nio.charset.Charset; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * Utilities for dealing with file encoding. diff --git a/common/source/java/ch/systemsx/cisd/common/utilities/ISelfTestable.java b/common/source/java/ch/systemsx/cisd/common/utilities/ISelfTestable.java index f861f85475ddf330a012d553a33dd200aeb517fc..c6b1c393531e42c1b5f614169058e6c289866dda 100644 --- a/common/source/java/ch/systemsx/cisd/common/utilities/ISelfTestable.java +++ b/common/source/java/ch/systemsx/cisd/common/utilities/ISelfTestable.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.common.utilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * A role that can perform a self test. diff --git a/common/source/java/ch/systemsx/cisd/common/utilities/SystemExit.java b/common/source/java/ch/systemsx/cisd/common/utilities/SystemExit.java index 553c7f149620e1440bc389dad32829a9d887c14d..3bcb55ec55148fcf15065c61a3c0c1b82b05fe67 100644 --- a/common/source/java/ch/systemsx/cisd/common/utilities/SystemExit.java +++ b/common/source/java/ch/systemsx/cisd/common/utilities/SystemExit.java @@ -17,7 +17,7 @@ package ch.systemsx.cisd.common.utilities; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.SystemExitException; +import ch.systemsx.cisd.common.exceptions.SystemExitException; /** * Exit handler based on <code>System.exit()</code>. diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/collection/GroupingDAGTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/collection/GroupingDAGTest.java index adf94f8edd89629972bf747a0b13d4fc885bd2a2..434caa70937b45dada976c20b0dc1aa756b10c0a 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/collection/GroupingDAGTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/collection/GroupingDAGTest.java @@ -30,7 +30,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.Test; import ch.systemsx.cisd.common.collection.GroupingDAG; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author Jakub Straszewski diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutorTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutorTest.java index d38de079ab3cc9c0f194201a56c1221b0c845112..1cb0b132e8a57dbfdb152395703202c3795dfffe 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutorTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/concurrent/ParallelizedExecutorTest.java @@ -23,7 +23,7 @@ import java.util.List; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * Tests of {@link ParallelizedExecutor}. diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/exception/ExceptionUtilsTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/exceptions/ExceptionUtilsTest.java similarity index 97% rename from common/sourceTest/java/ch/systemsx/cisd/common/exception/ExceptionUtilsTest.java rename to common/sourceTest/java/ch/systemsx/cisd/common/exceptions/ExceptionUtilsTest.java index 33999bc3b6a35d74c0ab19aa15194cdbe70acc3f..2998093c8571ae7bf68a26614a9ac65c69299d08 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/exception/ExceptionUtilsTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/exceptions/ExceptionUtilsTest.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import static org.testng.AssertJUnit.assertEquals; import static org.testng.AssertJUnit.assertFalse; @@ -34,9 +34,9 @@ import org.testng.annotations.Test; import org.xml.sax.SAXException; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ExceptionUtils; -import ch.systemsx.cisd.common.exception.MasqueradingException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.MasqueradingException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Test cases for the {@link ExceptionUtilsTest}. diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/exception/NotImplementedExceptionTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/exceptions/NotImplementedExceptionTest.java similarity index 92% rename from common/sourceTest/java/ch/systemsx/cisd/common/exception/NotImplementedExceptionTest.java rename to common/sourceTest/java/ch/systemsx/cisd/common/exceptions/NotImplementedExceptionTest.java index f43550aa43fda00351197d27ead063fe28af5420..dc735344d5b5fec36ab23118039eda8e59ce998d 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/exception/NotImplementedExceptionTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/exceptions/NotImplementedExceptionTest.java @@ -14,11 +14,11 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import static org.testng.AssertJUnit.*; diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/exception/UserFailureExceptionTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/exceptions/UserFailureExceptionTest.java similarity index 90% rename from common/sourceTest/java/ch/systemsx/cisd/common/exception/UserFailureExceptionTest.java rename to common/sourceTest/java/ch/systemsx/cisd/common/exceptions/UserFailureExceptionTest.java index 0907ee11f5ba11c1ed6ac3c9d0c72eb30815d341..c488fa003eeba8a41d22a5b44c14c59f6fe1b6aa 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/exception/UserFailureExceptionTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/exceptions/UserFailureExceptionTest.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.common.exception; +package ch.systemsx.cisd.common.exceptions; import static org.testng.AssertJUnit.*; @@ -22,7 +22,7 @@ import java.util.MissingFormatArgumentException; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Test cases for the {@link UserFailureException} @@ -34,7 +34,7 @@ public final class UserFailureExceptionTest /** * Test method for - * {@link ch.systemsx.cisd.common.exception.UserFailureException#fromTemplate(java.lang.String, java.lang.Object[])}. + * {@link ch.systemsx.cisd.common.exceptions.UserFailureException#fromTemplate(java.lang.String, java.lang.Object[])}. */ @Test public final void testFromTemplateStringObjectArray() diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesLastChangedTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesLastChangedTest.java index a85c99ac362ac3b87b3071f194f4e3190855d914..939b11e485649f29ab4661b21c76f43fa4514076 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesLastChangedTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesLastChangedTest.java @@ -28,8 +28,8 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.Retry10; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UnknownLastChangedException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UnknownLastChangedException; import ch.systemsx.cisd.common.logging.LogInitializer; /** diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesTest.java index ffd692152740d602eececd07b6c59328bd26679d..9f691e80e07e9a365e536bc8c0b6a86831347462 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/FileUtilitiesTest.java @@ -32,7 +32,7 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.concurrent.IActivityObserver; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.parser.filter.ExcludeEmptyAndCommentLineFilter; /** diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrependerTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrependerTest.java index d890cdbff442179bd9a3cee11a2e4a16896e8ee5..c8655dab54173e16a6b122b2ca1a8ce0d948189c 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrependerTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/PathPrefixPrependerTest.java @@ -22,7 +22,7 @@ import org.testng.annotations.DataProvider; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.PathPrefixPrepender; /** diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilterTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilterTest.java index 6e3944e120f9ac77e97be69cb04b8c44a3ceb5b1..51416be7f695ee1ffd2c867b394324b66569aec8 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilterTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/QuietPeriodFileFilterTest.java @@ -30,7 +30,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.QuietPeriodFileFilter; import ch.systemsx.cisd.common.filesystem.StoreItem; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMarkTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMarkTest.java index 4e9f625d1d95da91ad58523857568e135762f008..c7c4b5f008ba57fb427ca722dc6a52c2e3a00e01 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMarkTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/highwatermark/HostAwareFileWithHighwaterMarkTest.java @@ -27,7 +27,7 @@ import java.util.Properties; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.highwatermark.HostAwareFileWithHighwaterMark; /** diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopierTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopierTest.java index 07294d2a6edd14ba89eca701ebcc8cd5ea5a9931..cf0b436e613e3b0023972f8dc8e50c1817d065f6 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopierTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/filesystem/rsync/RsyncCopierTest.java @@ -36,8 +36,8 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.io.CollectionIO; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/io/PropertyIOUtilsTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/io/PropertyIOUtilsTest.java index 802499bdbc4b2ef2eaaac79ae32d01853e96a2b9..38d4067391df78e63226bd64a09c5534e6091337 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/io/PropertyIOUtilsTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/io/PropertyIOUtilsTest.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; /** diff --git a/common/sourceTest/java/ch/systemsx/cisd/common/properties/PropertyUtilsTest.java b/common/sourceTest/java/ch/systemsx/cisd/common/properties/PropertyUtilsTest.java index 5ee52804ed9ac0372746e1ecb5e780eca159c4e5..9676722a93304d4f374ef1f0b75336528c6dbbf3 100644 --- a/common/sourceTest/java/ch/systemsx/cisd/common/properties/PropertyUtilsTest.java +++ b/common/sourceTest/java/ch/systemsx/cisd/common/properties/PropertyUtilsTest.java @@ -24,7 +24,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/DataMoverShutdownHook.java b/datamover/source/java/ch/systemsx/cisd/datamover/DataMoverShutdownHook.java index c7e07bf38fbbf217b983c0956fe493a05e464928..c172b83825a5a606803a5213ce8a4513e1e0edda 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/DataMoverShutdownHook.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/DataMoverShutdownHook.java @@ -22,7 +22,7 @@ import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.action.ITerminable; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.utilities.IExitHandler; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/LocalProcessor.java b/datamover/source/java/ch/systemsx/cisd/datamover/LocalProcessor.java index a4e56da8284a2ba08bf8eb3e23871784d010be39..1fd03460f23e01e23daf7d7c4f2e77e3d3ad0383 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/LocalProcessor.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/LocalProcessor.java @@ -29,8 +29,8 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IImmutableCopier; import ch.systemsx.cisd.common.filesystem.IPathHandler; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/Main.java b/datamover/source/java/ch/systemsx/cisd/datamover/Main.java index 512e7636d2bd47dc3914f87297dbbc7865b866bb..614ab5534bb396dcd3c0bc3d270a70740f40e30f 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/Main.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/Main.java @@ -25,7 +25,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.ITerminable; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; import ch.systemsx.cisd.common.filesystem.highwatermark.HostAwareFileWithHighwaterMark; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/Parameters.java b/datamover/source/java/ch/systemsx/cisd/datamover/Parameters.java index bd29c4a675f98aa1592688b5d31fbb9bd557eb67..c7b237bf58fb79164daf35bf0df0f806daea680f 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/Parameters.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/Parameters.java @@ -39,7 +39,7 @@ import ch.systemsx.cisd.args4j.spi.LongOptionHandler; import ch.systemsx.cisd.args4j.spi.OptionHandler; import ch.systemsx.cisd.args4j.spi.Setter; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.highwatermark.HostAwareFileWithHighwaterMark; import ch.systemsx.cisd.common.io.PropertyIOUtils; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/SelfTest.java b/datamover/source/java/ch/systemsx/cisd/datamover/SelfTest.java index 7f44edafa0445e3f75b394550ea4d2cffeb717e2..a3f0b8319f3227f88479b8724cdd7b28e8086943 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/SelfTest.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/SelfTest.java @@ -18,9 +18,9 @@ package ch.systemsx.cisd.datamover; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.common.filesystem.IPathCopier; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/TimerTaskListenerForMarkerFileProtocol.java b/datamover/source/java/ch/systemsx/cisd/datamover/TimerTaskListenerForMarkerFileProtocol.java index 90d536c7bf3d47a3bf3e04d64199d9f41cf63c4d..568e14836e4c5a77b4eb7e26daf2d2bfac2e5aff 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/TimerTaskListenerForMarkerFileProtocol.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/TimerTaskListenerForMarkerFileProtocol.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.common.concurrent.DummyTimerTaskListener; import ch.systemsx.cisd.common.concurrent.ITimerTaskListener; import ch.systemsx.cisd.common.concurrent.ITimerTaskStatusProvider; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * An implementation of {@link ITimerTaskListener} which creates an empty marker file before the diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/FileSysOperationsFactory.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/FileSysOperationsFactory.java index 540c252b571f7afbdd0cdb3fb2d8e4a93098ef94..6b70c2afc1093300334ca3f0f544029689a7b10d 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/FileSysOperationsFactory.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/FileSysOperationsFactory.java @@ -21,7 +21,7 @@ import java.io.File; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FastRecursiveHardLinkMaker; import ch.systemsx.cisd.common.filesystem.IImmutableCopier; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RemoteMonitoredMoverFactory.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RemoteMonitoredMoverFactory.java index e75ad1ccdc5c17686a851c4bad019c6d6be72635..52c424f6c49e0c5d648da3de7ec2ffea3c69ebb8 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RemoteMonitoredMoverFactory.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RemoteMonitoredMoverFactory.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.datamover.filesystem; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.datamover.common.IStoreMover; import ch.systemsx.cisd.datamover.filesystem.intf.IFileStore; import ch.systemsx.cisd.datamover.filesystem.intf.IStoreCopier; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RetryingPathRemover.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RetryingPathRemover.java index e53eeea0c2601dc2c18710caca73130c41907e63..f0e8caa9d55661cde35f62b7afb07c6175d6fa43 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RetryingPathRemover.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/RetryingPathRemover.java @@ -33,7 +33,7 @@ import ch.systemsx.cisd.common.concurrent.IActivityObserver; import ch.systemsx.cisd.common.concurrent.InactivityMonitor; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IDescribingActivitySensor; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IInactivityObserver; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/AbstractFileStore.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/AbstractFileStore.java index 941090294b08642d264a88ed399795543665b84c..217bcb4a6a4d79f1224dd56c872e5d905dd92f47 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/AbstractFileStore.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/AbstractFileStore.java @@ -23,9 +23,9 @@ import org.apache.commons.lang.StringUtils; import org.apache.commons.lang.builder.EqualsBuilder; import org.apache.commons.lang.builder.HashCodeBuilder; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IFileStore.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IFileStore.java index a129c1190818f2090ca7f2ee8dc34ac9d8d9c1fe..b3afa23f5860eca674b010fea845e329b8bcaaff 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IFileStore.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IFileStore.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.datamover.filesystem.intf; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.ILastModificationChecker; import ch.systemsx.cisd.common.filesystem.StoreItem; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IPathRemover.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IPathRemover.java index 297a21e61c4d266205c53f47a588fd23dca8af24..0dce81ce614b2f3a7e6d40ed08895b40744142bf 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IPathRemover.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IPathRemover.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.datamover.filesystem.intf; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * Interface that represents a role that deletes files and directories from a file system. diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IStoreCopier.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IStoreCopier.java index 49d5b066e5894e7e6d79ec11da933d3e7dc356cc..d00281840675d302b4e2d422e596ca7f49eadebe 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IStoreCopier.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/intf/IStoreCopier.java @@ -17,7 +17,7 @@ package ch.systemsx.cisd.datamover.filesystem.intf; import ch.systemsx.cisd.common.action.ITerminable; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.StoreItem; import ch.systemsx.cisd.common.utilities.ISelfTestable; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemotePathMover.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemotePathMover.java index 72e32d05b616e00cda83aaca67244dcc3ccf6f7d..3250e4773a6ff0ee9f3a93520168f5bf09ef5382 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemotePathMover.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemotePathMover.java @@ -20,9 +20,9 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.concurrent.InactivityMonitor; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IInactivityObserver; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.StoreItem; import ch.systemsx.cisd.common.logging.ConditionalNotificationLogger; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensor.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensor.java index 00e3c4001775bcea41a7feadaeb9c401b545955e..a8fd9099aeb230b9955a56da39fc4e969fd8d72c 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensor.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensor.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.datamover.filesystem.remote; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.concurrent.InactivityMonitor.IDescribingActivitySensor; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.AbstractCopyActivitySensor; import ch.systemsx.cisd.common.filesystem.StoreItem; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreLocal.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreLocal.java index 488023054e9b85cb9500316028d2a04288fc44ac..f190149a5e7fc4f0e609bc890a93ae4dc6348a1d 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreLocal.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreLocal.java @@ -24,9 +24,9 @@ import org.apache.commons.io.FilenameUtils; import org.apache.commons.lang.time.DateUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.LastModificationChecker; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemote.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemote.java index 64222342a37de6eba5c8697fbd0a2c15645b7523..ce3f2bd141b1150fe24a0d0e8c40acb0fe3a2792 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemote.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemote.java @@ -24,9 +24,9 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; import ch.systemsx.cisd.common.filesystem.StoreItem; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemoteMounted.java b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemoteMounted.java index c3a77fb89459b217335cf47cb726323443a54f8a..2aac3dfc881311753a2d7121877867b2d39c301e 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemoteMounted.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/filesystem/store/FileStoreRemoteMounted.java @@ -18,10 +18,10 @@ package ch.systemsx.cisd.datamover.filesystem.store; import ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked; import ch.systemsx.cisd.common.concurrent.MonitoringProxy; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.StoreItem; import ch.systemsx.cisd.common.filesystem.highwatermark.HighwaterMarkWatcher; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/transformation/DummyTransformator.java b/datamover/source/java/ch/systemsx/cisd/datamover/transformation/DummyTransformator.java index 7e547ed65258853f279c345b88b65819dc5a9127..03633e443b2a907dd1e09618e6024619a696d045 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/transformation/DummyTransformator.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/transformation/DummyTransformator.java @@ -21,7 +21,7 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/transformation/ITransformator.java b/datamover/source/java/ch/systemsx/cisd/datamover/transformation/ITransformator.java index a154611bb2cf46e40b4fce44cc4ccfbb5ab07f98..45debd8cc8936d8df7db209aa3ad385d29b32a0d 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/transformation/ITransformator.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/transformation/ITransformator.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.datamover.transformation; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * Interface of the data transformator. diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/transformation/TiffCompressorTransformator.java b/datamover/source/java/ch/systemsx/cisd/datamover/transformation/TiffCompressorTransformator.java index a3e6af1d71e199d256e0f279a1a6d4d8a28af19a..dacbecb3197be6a0a8a4c3d70d5582375095d357 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/transformation/TiffCompressorTransformator.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/transformation/TiffCompressorTransformator.java @@ -22,9 +22,9 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.fileconverter.FileConverter; import ch.systemsx.cisd.common.fileconverter.TiffCompressionStrategy; import ch.systemsx.cisd.common.fileconverter.TiffCompressionStrategy.TiffCompressionMethod; diff --git a/datamover/source/java/ch/systemsx/cisd/datamover/utils/LocalBufferDirs.java b/datamover/source/java/ch/systemsx/cisd/datamover/utils/LocalBufferDirs.java index 62d9a9e04acf89c2a0d6ada0a0c40d604595dbe3..898505b0e427748e92427abe551c5ad4c52ff811 100644 --- a/datamover/source/java/ch/systemsx/cisd/datamover/utils/LocalBufferDirs.java +++ b/datamover/source/java/ch/systemsx/cisd/datamover/utils/LocalBufferDirs.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.datamover.utils; import java.io.File; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.highwatermark.HostAwareFileWithHighwaterMark; /** diff --git a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/IncomingProcessorTest.java b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/IncomingProcessorTest.java index 53f471694551273cca2c6958825274085d681591..574386ae1d50fc0998dcdf40d0dd6e69864bc5b9 100644 --- a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/IncomingProcessorTest.java +++ b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/IncomingProcessorTest.java @@ -42,7 +42,7 @@ import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.concurrent.ITimerTaskListener; import ch.systemsx.cisd.common.concurrent.ITimerTaskStatusProvider; import ch.systemsx.cisd.common.concurrent.TimerTaskWithListeners; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; import ch.systemsx.cisd.common.filesystem.highwatermark.HostAwareFileWithHighwaterMark; diff --git a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/ParametersTest.java b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/ParametersTest.java index 8a525120a43c43f5dab9718d91f297147c05592d..0ddbf33b22054955f4188a1f6fa38c007e704519 100644 --- a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/ParametersTest.java +++ b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/ParametersTest.java @@ -28,7 +28,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.highwatermark.HostAwareFileWithHighwaterMark; import ch.systemsx.cisd.common.utilities.SystemExit; import ch.systemsx.cisd.datamover.Parameters.HostAwareFileWithHighwaterMarkHandler; diff --git a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/SelfTestTest.java b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/SelfTestTest.java index 8035b59838196683612060526e465700f37887d8..f4edec8e07f6cb35dc5ae53d1113ed475c401eb2 100644 --- a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/SelfTestTest.java +++ b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/SelfTestTest.java @@ -23,9 +23,9 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensorTest.java b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensorTest.java index 8684505952f2fc773c6a866e6f3cedf6cb547e34..a403301fe82ae6519bba69c5b846252f529104ee 100644 --- a/datamover/sourceTest/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensorTest.java +++ b/datamover/sourceTest/java/ch/systemsx/cisd/datamover/filesystem/remote/RemoteStoreCopyActivitySensorTest.java @@ -26,7 +26,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.StatusWithResult; +import ch.systemsx.cisd.common.exceptions.StatusWithResult; import ch.systemsx.cisd.common.filesystem.StoreItem; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.datamover.filesystem.intf.IFileStore; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDataSetInfoExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDataSetInfoExtractor.java index a53b7294849726cf851bd5096817ea70079d4f44..2a89e92b7b06524d116dde847852c469d45cf75c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDataSetInfoExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDataSetInfoExtractor.java @@ -24,8 +24,8 @@ import java.util.Map; import java.util.Properties; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.parser.TabFileLoader; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.generic.shared.dto.NewProperty; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingDataSetInfoExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingDataSetInfoExtractor.java index 84ba98236c233e245e03e41cc936b42f1122e58a..793a2826099b866f46b3811f455bd26822f5f246 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingDataSetInfoExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingDataSetInfoExtractor.java @@ -22,9 +22,9 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.ExtendedProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingStorageProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingStorageProcessor.java index 3bdc4c010bea3544ebab22e41fa25d10379abb43..d0aa397408a17f54e4cdcdc6032d7189b9c4bf77 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingStorageProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractDelegatingStorageProcessor.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.ExtendedProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractStrorageProcessorWithUploader.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractStrorageProcessorWithUploader.java index 99db35c10dcdd00bda7898949509bbdf8f15fda7..e30493079ff781fa08007ac75eb6f4f45a045279 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractStrorageProcessorWithUploader.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/AbstractStrorageProcessorWithUploader.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.mail.IMailClient; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetInfoExtractorWithFileNameProperty.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetInfoExtractorWithFileNameProperty.java index c7919978e4b8d0212757b6b9fac2208aceeea922..327cc62bed7deab6d654d77637be8cbdf856fc0c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetInfoExtractorWithFileNameProperty.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetInfoExtractorWithFileNameProperty.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.etlserver; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProvider.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProvider.java index 14edabe8ad2e75f13d6975914da8b2235ffb301a..7962534e63463c964c3a90ab27d1412a50f6009b 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProvider.java @@ -21,7 +21,7 @@ import java.io.File; import org.apache.commons.io.FilenameUtils; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Class which splits a data set name into entities and makes them accessible. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java index 96a356b899c16e08ddc157abdd258fa6cc10cca6..7c67e0873d18010567797433f8304ff607364de6 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java @@ -28,9 +28,9 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationHelper.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationHelper.java index 9cc17aec8e43dcab44294e1e514c1157530ddb93..6eafe69c1ffd771bd15665a296f2abc4c91feb4e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationHelper.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationHelper.java @@ -25,8 +25,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.common.filesystem.IFileOperations; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.etlserver.DataSetRegistrationAlgorithm.DataSetRegistrationAlgorithmState; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataStrategyStore.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataStrategyStore.java index a8b37a3c587c79ec9784eef135859c9488166d4c..a66ea872dd2b40c08a068adb2eb9142f487baf78 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataStrategyStore.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataStrategyStore.java @@ -23,8 +23,8 @@ import java.util.Map; import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractor.java index e564fa2b824edb4691cac9d1b9c651e56d11d395..fef15d0cbc0cc75cfff911e8998a7ffe9c35a563 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractor.java @@ -28,9 +28,9 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultStorageProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultStorageProcessor.java index e8a228b24e43323a06478eb2cc4870b96a47d39b..2847c3e4c65b620b93fc83374888c46181efe671 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultStorageProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DefaultStorageProcessor.java @@ -24,8 +24,8 @@ import java.util.Properties; import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DispatcherStorageProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DispatcherStorageProcessor.java index 45bf7750bc00643d14d9da9f8c7af9fdb422b29f..317a1c032513a7123defb627c42d4a063f4a5d22 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DispatcherStorageProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DispatcherStorageProcessor.java @@ -24,7 +24,7 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/ETLDaemon.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/ETLDaemon.java index a88e60a20e88c6fa7afa0ab8751bb5e7a1f10516..ba68e6301392d8b60bfa96c605e4d62f1b6edb70 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/ETLDaemon.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/ETLDaemon.java @@ -39,9 +39,9 @@ import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.common.concurrent.TimerUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.DirectoryScanningTimerTask; import ch.systemsx.cisd.common.filesystem.DirectoryScanningTimerTask.IScannedStore; import ch.systemsx.cisd.common.filesystem.FaultyPathDirectoryScanningHandler; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileBasedFile.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileBasedFile.java index a3371dd8c35dc26d2cc98653cc515ada1c3677f1..11283f25cf6e9789385107ab2dc8e339e3fbc715 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileBasedFile.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileBasedFile.java @@ -23,9 +23,9 @@ import org.apache.commons.io.FileUtils; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IImmutableCopier; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileTypeExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileTypeExtractor.java index e3e41301217b3cf2a302729eec4b340075636c4a..e3c74f9d33d26867af333f188095a37a05898190 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileTypeExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/FileTypeExtractor.java @@ -25,7 +25,7 @@ import org.apache.commons.io.FilenameUtils; import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.FileFormatType; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetInfoExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetInfoExtractor.java index 5d2b42bbd4967948167ec122e223af7d249926ee..52ed59ee842c24879fb3625e445841240155bbdd 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetInfoExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetInfoExtractor.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.etlserver; import java.io.File; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetUploader.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetUploader.java index c58112d2307adfef1081d916bb76f737eda39b07..94d057af3330fab1606b6c7faa73c3b853678ef8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetUploader.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/IDataSetUploader.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.etlserver; import java.io.File; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategy.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategy.java index f4863214de28abaaa6ecd232ce965901137a72a1..35c1d45eb6a50c4a1dbf11444cf862df3b435e64 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategy.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategy.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver; import java.io.File; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/Parameters.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/Parameters.java index fc5d1ff9c3a9f28f08afd2b3a4d85d9eace0e644..dbde7b6ec97c8339963a67c16ab14f9bfee1156a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/Parameters.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/Parameters.java @@ -25,8 +25,8 @@ import ch.systemsx.cisd.args4j.CmdLineException; import ch.systemsx.cisd.args4j.CmdLineParser; import ch.systemsx.cisd.args4j.ExampleMode; import ch.systemsx.cisd.args4j.Option; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.JavaMailProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/PropertiesBasedETLServerPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/PropertiesBasedETLServerPlugin.java index f3a3c1a8a7942c17927c3892f549814f4e4d18ce..c289024c745635bd475fefcfa22474a2ffe6aee1 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/PropertiesBasedETLServerPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/PropertiesBasedETLServerPlugin.java @@ -24,7 +24,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.reflection.ClassUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/SmartParentDataSetInfoExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/SmartParentDataSetInfoExtractor.java index 674a501258df9df865180c6258164af1fafd6257..4492888f67460d03a376073cb7a14126dd20c522 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/SmartParentDataSetInfoExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/SmartParentDataSetInfoExtractor.java @@ -23,9 +23,9 @@ import java.util.List; import java.util.Properties; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/ThreadParameters.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/ThreadParameters.java index 299e29f8f2ec62bdba0c29512ecddcbbcccaa739..96094c995dc5c44ab99f3938cbd424ad175e5d88 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/ThreadParameters.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/ThreadParameters.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java index 66e66ab0b8f5ec7c9569b55664b4bcffaddcf10a..c4e2b91b181c559e0cb0cb9c5c9e2f7d36a7744f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java @@ -26,9 +26,9 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.common.action.AbstractDelegatedActionWithResult; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetExecutor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetExecutor.java index 8ff3ac6a8f9f94bc7fab85b0e5edf16ed6a77e37..34387694adf8547b66e5048d0cb61a695c46b536 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetExecutor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetExecutor.java @@ -33,10 +33,10 @@ import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.action.AbstractDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FastRecursiveHardLinkMaker; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetServerPluginHolder.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetServerPluginHolder.java index b85f330d46d05ff9fab05c126709183b46bb8883..080ad62185b7896cf220f9876b11d9f6466f2cd7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetServerPluginHolder.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetServerPluginHolder.java @@ -19,9 +19,9 @@ package ch.systemsx.cisd.etlserver.api.v1; import java.io.File; import java.util.concurrent.locks.Lock; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.AbstractTopLevelDataSetRegistrator; import ch.systemsx.cisd.etlserver.ETLServerPluginFactory; import ch.systemsx.cisd.etlserver.IETLServerPlugin; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java index 55ffdbc6292fa31254ac21046bdadc96252f93f9..1323a935191e3beb274c0ae4f5e780a46156b14f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java @@ -29,8 +29,8 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.etlserver.DataStrategyStore; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandler.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandler.java index 26470dad5dd44e06968403438342fd7a79fa71cd..9838b386d4b392e06a25af153c129963889efbb4 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandler.java @@ -30,8 +30,8 @@ import java.util.Map; import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.ConcatenatedFileOutputStreamWriter; import ch.systemsx.cisd.etlserver.ITopLevelDataSetRegistrator; import ch.systemsx.cisd.etlserver.ITopLevelDataSetRegistratorDelegate; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexDataSetInfoExtractor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexDataSetInfoExtractor.java index ed188824e08fdf5c2e393bfc6d86ef770c070ac8..95a392bb0b271d44c0938c0c6c1fcc9e4c6dd68e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexDataSetInfoExtractor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexDataSetInfoExtractor.java @@ -25,8 +25,8 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexExtractorHelper.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexExtractorHelper.java index deca8faf54ce4f10eb1f25a79222be0762384a3c..29c0784914d0273ce6d5c2c3d4a2fa7e2afd58cd 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexExtractorHelper.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/cifex/CifexExtractorHelper.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver.cifex; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.PropertyIOUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.DataSetUploadInfo; import ch.systemsx.cisd.openbis.generic.shared.basic.DataSetUploadInfo.DataSetUploadInfoHelper; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetControlFileProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetControlFileProcessor.java index 57f271d0bea5ceddc7b6a9889b186efd5e3054d8..391ba3a3463cbf621e65008cae02ab7a405762c0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetControlFileProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetControlFileProcessor.java @@ -34,8 +34,8 @@ import javax.activation.DataSource; import javax.mail.util.ByteArrayDataSource; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.DelegatedReader; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.string.UnicodeUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetFolderProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetFolderProcessor.java index 320bdcb27f5e1a53f4e450ea6af79db24c8eef6d..0fd32109600299d5838dcadc27179d1cc6ad1976 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetFolderProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetFolderProcessor.java @@ -30,8 +30,8 @@ import javax.mail.util.ByteArrayDataSource; import org.apache.commons.io.filefilter.RegexFileFilter; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.EMailAddress; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetRegistrator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetRegistrator.java index c83aeed772f55809b30f2de886fba34c5635752c..e71839d8d1d1bb3f0081fb81ff1b8fa393ff7bc9 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetRegistrator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/entityregistration/SampleAndDataSetRegistrator.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.etlserver.entityregistration; import java.io.File; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.DataSetRegistrationAlgorithm; import ch.systemsx.cisd.etlserver.IExtensibleDataSetHandler; import ch.systemsx.cisd.etlserver.entityregistration.SampleAndDataSetControlFileProcessor.ControlFileRegistrationProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/AutoArchiverTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/AutoArchiverTask.java index 828b497ecdbd1ac1d7c80451115252bc3078b71a..bec84b94f7cf0959bf70c4a5f1f9d4ef624a119a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/AutoArchiverTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/AutoArchiverTask.java @@ -23,7 +23,7 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.maintenance.IMaintenanceTask; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/DeleteFromExternalDBMaintenanceTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/DeleteFromExternalDBMaintenanceTask.java index b5a2bae144673bdcf93e1922c354bf62d21c2824..6c9524e31374953ec4a88c764f95f6f9f650b7d7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/DeleteFromExternalDBMaintenanceTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/DeleteFromExternalDBMaintenanceTask.java @@ -27,7 +27,7 @@ import javax.sql.DataSource; import org.apache.commons.lang.StringEscapeUtils; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DeletedDataSet; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/ExperimentBasedArchivingTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/ExperimentBasedArchivingTask.java index 97f21ead6d4c80511a91c0381e8b32fb05e6071f..9dd44dfe17599036c44af02f1a0ec875853b090b 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/ExperimentBasedArchivingTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/ExperimentBasedArchivingTask.java @@ -36,7 +36,7 @@ import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; import ch.systemsx.cisd.common.filesystem.SimpleFreeSpaceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/HierarchicalStorageUpdater.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/HierarchicalStorageUpdater.java index 85d1d82101fb70d548a86031b9d2c1cddf3d30e9..307077b903bd66fea73033505393f9ad2faec84c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/HierarchicalStorageUpdater.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/HierarchicalStorageUpdater.java @@ -29,7 +29,7 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.SoftLinkMaker; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/SegmentedStoreShufflingTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/SegmentedStoreShufflingTask.java index 1d19b4d09ac9b708fa1def0ef993b3166825cb95..ca875c7aa385921e5196390f0ad040cc4b6419aa 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/SegmentedStoreShufflingTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/plugins/SegmentedStoreShufflingTask.java @@ -31,7 +31,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; import ch.systemsx.cisd.common.filesystem.SimpleFreeSpaceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTask.java index 4cd90168f8f4253d0085cf7f8489e30712114569..b58abf6276353b82c114e722db7acd7014ca64b7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTask.java @@ -25,7 +25,7 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTask.java index 88ace2ac4a0ed55bcf0de81f938333543636aad3..374c2eeb8ae990632eb08adc7ceae7317dd1e885 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTask.java @@ -25,8 +25,8 @@ import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; import ch.systemsx.cisd.common.filesystem.SimpleFreeSpaceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java index 0fb16ed115e02596cb34f664f1f7198f20b5d24f..5d1985e9024f24dadc8ec54a3e412af2dd05f5c5 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java @@ -30,7 +30,7 @@ import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/PostRegistrationMaintenanceTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/PostRegistrationMaintenanceTask.java index 1997136fca4f655cedc2dfce5642bce1b66590d4..286b6ef8b74126cea117ee38a7a0c572a60f0a88 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/PostRegistrationMaintenanceTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/PostRegistrationMaintenanceTask.java @@ -34,7 +34,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/TaskExecutor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/TaskExecutor.java index c90208f30195720ff03afd41ef883ad79f58de90..a33fddd18a28254344a43ad600a9dad25e90f2e8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/TaskExecutor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/TaskExecutor.java @@ -27,7 +27,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractOmniscientTopLevelDataSetRegistrator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractOmniscientTopLevelDataSetRegistrator.java index 9a3cc72e8c13e8e74d61e4a4020a35095ad23ecd..60fe48c4d94df6408ce71e99474826228683d2f0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractOmniscientTopLevelDataSetRegistrator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractOmniscientTopLevelDataSetRegistrator.java @@ -30,11 +30,11 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.common.action.AbstractDelegatedActionWithResult; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.NotImplementedException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.AssertionCatchingImmutableCopierWrapper; import ch.systemsx.cisd.common.filesystem.FastRecursiveHardLinkMaker; import ch.systemsx.cisd.common.filesystem.FileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractProgrammableTopLevelDataSetHandler.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractProgrammableTopLevelDataSetHandler.java index 39fc2e43f41709ec593b52d93ed4b8787013858a..ea05fb680e13a840853eac0664f7e594e93d0457 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractProgrammableTopLevelDataSetHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/AbstractProgrammableTopLevelDataSetHandler.java @@ -27,7 +27,7 @@ import org.python.core.PyException; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.DssRegistrationLogger; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.UnstoreDataAction; import ch.systemsx.cisd.etlserver.ITopLevelDataSetRegistratorDelegate; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/DataSetStorageAlgorithm.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/DataSetStorageAlgorithm.java index 74ebf0393d74650cd40ee4dc6366c7ab5ec04c01..d7686c263e33ddddaa4fc9539b478d92e8c258fc 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/DataSetStorageAlgorithm.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/DataSetStorageAlgorithm.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.time.StopWatch; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/IncomingFileDeletedBeforeRegistrationException.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/IncomingFileDeletedBeforeRegistrationException.java index 05ddf2f668938c9e79e8658dbb5d349d6071e74a..f26abc4e6b8f68706f2e07660d2474fb49f99f0f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/IncomingFileDeletedBeforeRegistrationException.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/IncomingFileDeletedBeforeRegistrationException.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * An exception that is thrown if it is determined that the incoming file to register was deleted diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetHandler.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetHandler.java index 27999cb7620b7342831b73ea402c4eaaff33be9b..8fd4e34a3ac2090876955f55f8cb9ee536d11b37 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetHandler.java @@ -25,8 +25,8 @@ import org.python.core.PyFunction; import org.python.core.PyObject; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.jython.PythonInterpreter; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/MarkerFileUtility.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/MarkerFileUtility.java index 8b0d8b9a6f6ebd4ae6f812e300a07dd9c6166334..15314139247f0d71c1fc5326be7d708e1c05b7f7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/MarkerFileUtility.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/MarkerFileUtility.java @@ -20,7 +20,7 @@ import java.io.File; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/TopLevelDataSetChecker.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/TopLevelDataSetChecker.java index af55805d188e6af1a58bfcbcee0611a060c00205..2c9059e65a55451299e05adbb858391371d95ad7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/TopLevelDataSetChecker.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/TopLevelDataSetChecker.java @@ -20,8 +20,8 @@ import java.io.File; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.IFileOperations; import ch.systemsx.cisd.etlserver.IStoreRootDirectoryHolder; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/AbstractTransactionState.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/AbstractTransactionState.java index b2f401df3ce522b94af152d7b2b5ffa3266117a0..783a49a5c1ea2c2458f15e51dcb86f80b639c305 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/AbstractTransactionState.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/AbstractTransactionState.java @@ -28,7 +28,7 @@ import net.lemnik.eodsql.DynamicTransactionQuery; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.etlserver.DynamicTransactionQueryFactory; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java index 9a49aa4b82a27289d250e064cd21d3de2f9abe43..5da6aa0b90207e90f536c484570626909431b7e2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java @@ -20,7 +20,7 @@ import java.util.Collections; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSet.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSet.java index a7382181a824c691eb0a20ba63f7a140af93cacd..7b1a14521b2929988874b061941d0589d0c007a2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSet.java @@ -22,7 +22,7 @@ import java.util.Arrays; import java.util.Collections; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSetRegistrationTransaction.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSetRegistrationTransaction.java index bdeedcb2eb93ee375d5309c89f77102a24ab8aaa..f4abcf691792d3416ba00d4b2082c665685ed3d8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSetRegistrationTransaction.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/DataSetRegistrationTransaction.java @@ -27,7 +27,7 @@ import net.lemnik.eodsql.DynamicTransactionQuery; import org.apache.commons.lang.time.DateFormatUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.etlserver.DssRegistrationLogger; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExperimentImmutable.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExperimentImmutable.java index d057fe273837b4667b394c3b74a0cd2c45c2ca1b..b9c9ca18e7d45daf19023dac9be399ddda62913c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExperimentImmutable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExperimentImmutable.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v1.impl; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.IExperimentImmutable; import ch.systemsx.cisd.openbis.generic.shared.util.EntityHelper; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/MaterialImmutable.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/MaterialImmutable.java index ce6992e580db6dd2a46fa4169cfd304fae916bbf..20d16b5e0ac1c2eda320aac8f4d1627ce59da30a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/MaterialImmutable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/MaterialImmutable.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v1.impl; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.IMaterialImmutable; import ch.systemsx.cisd.openbis.generic.shared.util.EntityHelper; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ProjectImmutable.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ProjectImmutable.java index f6833f816f89a6d9e0ca0e3f178bd1bbd8ad649c..ffe36ea8134add59fbab336b4f612417d3ba4aa3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ProjectImmutable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ProjectImmutable.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v1.impl; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.IProjectImmutable; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SampleImmutable.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SampleImmutable.java index aceaa1716c3dbc9db9f0a26eceda354ee4f6d736..14f3ba7af66b79e59576c5da30407134ab3e3775 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SampleImmutable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SampleImmutable.java @@ -21,7 +21,7 @@ import java.util.EnumSet; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.IExperimentImmutable; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.ISampleImmutable; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SpaceImmutable.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SpaceImmutable.java index c1c99d483906adbeb5a0736adfc269c24dacda70..b4e2ebb23817fbfe2723f6c6619716415463dcb8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SpaceImmutable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/SpaceImmutable.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v1.impl; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.ISpaceImmutable; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/AbstractJavaDataSetRegistrationDropboxV2.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/AbstractJavaDataSetRegistrationDropboxV2.java index c40ced8683e5179f0de97952fbd72d3f981507a9..3b203f1d9cdf1886bd26ae3273422afa9fec69b3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/AbstractJavaDataSetRegistrationDropboxV2.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/AbstractJavaDataSetRegistrationDropboxV2.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v2; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationContext; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/IJavaDataSetRegistrationDropboxV2.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/IJavaDataSetRegistrationDropboxV2.java index 94d74b2af36ab199d44e9d2ffaa6c25bf3a56a2c..853f24b5e18c93e29a6ededa99c4bfb9fa35f354 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/IJavaDataSetRegistrationDropboxV2.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/IJavaDataSetRegistrationDropboxV2.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v2; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationContext; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JavaTopLevelDataSetHandlerV2.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JavaTopLevelDataSetHandlerV2.java index 08df13cbb7c2a4867b84902fd3362b5e05877616..5361b2a7d0b09dd701da49c441759b2fac942e37 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JavaTopLevelDataSetHandlerV2.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JavaTopLevelDataSetHandlerV2.java @@ -20,8 +20,8 @@ import java.io.File; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.etlserver.ITopLevelDataSetRegistratorDelegate; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JythonAsJavaDataSetRegistrationDropboxV2Wrapper.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JythonAsJavaDataSetRegistrationDropboxV2Wrapper.java index e3b03a1d5b75338bbc0ac02fb90d07147e950d05..f49473a6947adcb8c77014555458ebc12d232027 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JythonAsJavaDataSetRegistrationDropboxV2Wrapper.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v2/JythonAsJavaDataSetRegistrationDropboxV2Wrapper.java @@ -22,7 +22,7 @@ import org.python.core.PyInteger; import org.python.core.PyObject; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.common.jython.JythonUtils; import ch.systemsx.cisd.common.jython.PythonInterpreter; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/recovery/DataSetStorageRecoveryManager.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/recovery/DataSetStorageRecoveryManager.java index e17518d5bd72d410dc97450e457ee258eba8c884..76d5fe70955e46bf7f90f9536e9c97391cb39665 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/recovery/DataSetStorageRecoveryManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/recovery/DataSetStorageRecoveryManager.java @@ -22,7 +22,7 @@ import java.util.Date; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/threev/AbstractDataSetInfoExtractorFor3V.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/threev/AbstractDataSetInfoExtractorFor3V.java index b6d533284a45dda5cd4dce4692893db055770ce6..5e71ca75b0f4b00e68ecdd7c12caeedd375830c1 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/threev/AbstractDataSetInfoExtractorFor3V.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/threev/AbstractDataSetInfoExtractorFor3V.java @@ -22,9 +22,9 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.etlserver.AbstractDataSetInfoExtractor; import ch.systemsx.cisd.etlserver.DataSetNameEntitiesProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/AbstractPreOrPostRegistrationExecutor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/AbstractPreOrPostRegistrationExecutor.java index a6c179cea7f9e6f7654250041739c3680748ae47..b212600e91d14cecdc88d1d1fc847478867ea26e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/AbstractPreOrPostRegistrationExecutor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/AbstractPreOrPostRegistrationExecutor.java @@ -24,7 +24,7 @@ import java.util.List; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.IFileOperations; import ch.systemsx.cisd.common.process.ProcessExecutionHelper; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTable.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTable.java index 9a3ce2cce2215ebd96b9a5ce5791ae40c1b876e9..7c2c48bfe41ea39273c6873a062680e7950465a8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTable.java @@ -26,7 +26,7 @@ import org.apache.commons.io.IOUtils; import org.apache.commons.io.LineIterator; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Helper class for get table data out of a TSV file. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/Unzipper.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/Unzipper.java index bd8a5267496635ac004f99afbf4ba391af7c3fca..203575ff76a8cdfc544f10e50104bc9771e1dbf8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/Unzipper.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/utils/Unzipper.java @@ -28,8 +28,8 @@ import java.util.zip.ZipFile; import org.apache.commons.io.IOUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; /** * {@link ZipFile} based utility class, unzipping files. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/AbstractValidator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/AbstractValidator.java index 3bc1f57870bda7d0fe0b092e8e6b3924cab1ea76..839eef07590b48b60242ca24b163dd786882604e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/AbstractValidator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/AbstractValidator.java @@ -20,7 +20,7 @@ import java.util.Set; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Super class for validators which handles empty cells in the same way. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinition.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinition.java index 2aceb25ac03c4b8b806b917f15cdc443b62cbe4c..ddfa77370708dfe3722320757a095c2f6fb5be99 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinition.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinition.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.etlserver.validation; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.reflection.ClassUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidator.java index 119832686625d6c5d7293c5df7f051ee71fd66bb..0c43f9a52a91b0807348b8e605c5caee3a0ef84e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidator.java @@ -25,8 +25,8 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSV.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSV.java index 4c26941066e19d5c3eadd9d13b51b5b620e2f828..99ece3e30ab85eed67e0c09eb15ea3d8fdcc2017 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSV.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSV.java @@ -34,8 +34,8 @@ import org.apache.commons.io.IOUtils; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DefaultValueValidatorFactory.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DefaultValueValidatorFactory.java index bcf074900b57b5cf9d4642b7ed07bebb6ea7ab59..ac048282b7a1758f9fb1b94849f535e6003799d2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DefaultValueValidatorFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/DefaultValueValidatorFactory.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.etlserver.validation; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; /** * Default factory for {@link IValidator} instances. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactory.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactory.java index 536156faa0589c7ed9b8e7759ae3cb83e54ce2f7..07f60e7af44e0b78f8d6e3a1895700c4b403870f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactory.java @@ -21,8 +21,8 @@ import java.util.List; import java.util.Properties; import java.util.regex.Pattern; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IDataSetValidator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IDataSetValidator.java index de79cf4b161830758f0e27b0d8b34ba6cee3311d..48cf747d731773bd06a54d478f1449dfeaa2556f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IDataSetValidator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IDataSetValidator.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver.validation; import java.io.File; import java.io.Reader; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IValidator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IValidator.java index 9a50a3d8842b01a62a525105706608d46d8f8391..4e2b3cf188dd04317631b54cadbdf9156c7fe08e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IValidator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/IValidator.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.validation; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Interface for a validator of a table cell value. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactory.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactory.java index c0ddd31d1276bf2dbd09a28e7227ba2a55bd683d..c8549987a7fc69d9cbf4764ca515c91263b3f845 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactory.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.etlserver.validation; import java.util.Properties; import java.util.Set; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Factory for validators of numeric values. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/RegExBasedValidator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/RegExBasedValidator.java index 14992ccdc3ad1f8f56fe69f19170ee9f35538283..777f9f7270c65b98a15892378cc63f8f7c15643a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/RegExBasedValidator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/RegExBasedValidator.java @@ -20,7 +20,7 @@ import java.util.Collections; import java.util.Set; import java.util.regex.Pattern; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Validator based on a regular expression. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidator.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidator.java index 5fd2b8486022a084a84598f506f479c8cdcce5bf..e758731ec4375962330f2009e06ec01ea97837d6 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidator.java @@ -24,7 +24,7 @@ import java.util.Set; import java.util.regex.Matcher; import java.util.regex.Pattern; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Checks uniqueness on selected groups of values matching given regular expression. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactory.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactory.java index ae31e6f083333cd3dfa2d5f9e05de2041001f021..b31872f3916104e98b0b822a8cebd63dbe597aec 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactory.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver.validation; import java.util.ArrayList; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactory.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactory.java index 5a8d927ad7b6566454cc3ce098b175d0370310af..1db62c31b1cca4969f1a82e32f79f34a8aed68f0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactory.java @@ -20,7 +20,7 @@ import java.util.HashSet; import java.util.Properties; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/AbstractClient.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/AbstractClient.java index e7431893c1baf12f4656c41e35e9ee8b4a6b362d..7b043877e3d9c010949e72aef5a771cd14849594 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/AbstractClient.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/AbstractClient.java @@ -27,11 +27,11 @@ import org.apache.commons.lang.StringUtils; import org.springframework.remoting.RemoteAccessException; import org.springframework.remoting.RemoteConnectFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.MasqueradingException; -import ch.systemsx.cisd.common.exception.SystemExitException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.MasqueradingException; +import ch.systemsx.cisd.common.exceptions.SystemExitException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.utilities.IExitHandler; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandGet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandGet.java index 551fd5bccea9f02d7e0f18a2480092793a70786b..7d794fc9e6d5d1e7bc2780f75a5ac77d16e82ca0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandGet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandGet.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.openbis.dss.client.api.cli; import java.io.File; import ch.systemsx.cisd.args4j.Option; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandHelp.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandHelp.java index f363e3880cd996edb0462b08251bc47278a77b46..dc8d39708d675232d52986fb45c1e08b74879ec2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandHelp.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandHelp.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.openbis.dss.client.api.cli; import java.io.PrintStream; import java.util.List; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Command that gives help about the program and other commands. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandLs.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandLs.java index 77b01d66d437c7a919e9987ec1c1b747315bfc7e..76315197c5f6b8f28df90e80060e27888f1f34b2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandLs.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandLs.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.openbis.dss.client.api.cli; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandPut.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandPut.java index f99f221e6e18717f971d21bf3aa9470ad4e90758..f73832151627064e81ba2f178cce7ea2664b0413 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandPut.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandPut.java @@ -26,8 +26,8 @@ import java.util.List; import ch.systemsx.cisd.args4j.ExampleMode; import ch.systemsx.cisd.args4j.Option; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestExtractMetadata.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestExtractMetadata.java index 58238a57074a06c98a9dda069bce6879d8c71226..8fdfceb976d50e5df386b0ffcc247e4b7be00163 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestExtractMetadata.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestExtractMetadata.java @@ -23,8 +23,8 @@ import java.util.Arrays; import java.util.Map; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestValid.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestValid.java index 9eb9591a07ec925a536a3fa18959bc568727c8d0..dca6e2944319202d77075d36eb559da31c6c7e81 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestValid.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/CommandTestValid.java @@ -27,9 +27,9 @@ import java.util.Map; import ch.systemsx.cisd.args4j.ExampleMode; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/ICommand.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/ICommand.java index 8b1ea6e8b47f28496bffcd47f71361dcd3436087..1d61fa95c2b0d35087ea7bf8ff2e274b8efff53a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/ICommand.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/cli/ICommand.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.dss.client.api.cli; import java.io.PrintStream; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * A <code>ICommand</code> encapsulates one action that gets called on the client side using the diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/AbstractSwingGUI.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/AbstractSwingGUI.java index e1476957dd6efaa71fd27a722d1799f5c6ddedcb..160ae5da1cb5487ccee692e64e085ccd290b6ba2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/AbstractSwingGUI.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/AbstractSwingGUI.java @@ -34,11 +34,11 @@ import org.apache.commons.lang.time.DateUtils; import org.springframework.remoting.RemoteAccessException; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade; import ch.systemsx.cisd.openbis.dss.client.api.v1.OpenbisServiceFacadeFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClient.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClient.java index ef332a4ee4730b68fd13b0d0bfa26fc90a97fa2d..5e9ac8e6de1de0fdc5c9a07e96b99470f18e5917 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClient.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClient.java @@ -48,8 +48,8 @@ import javax.swing.table.TableColumn; import org.python.core.Py; import org.python.core.PySystemState; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.utilities.ITimeProvider; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClientModel.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClientModel.java index 8e0cd4871da78444bfc0c90aee3fc687af247099..bdf310b9355f32137623c69f3434bf794fc8626f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClientModel.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/gui/DataSetUploadClientModel.java @@ -27,7 +27,7 @@ import java.util.concurrent.LinkedBlockingQueue; import java.util.concurrent.TimeUnit; import ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.TransmissionSpeedCalculator; import ch.systemsx.cisd.common.utilities.ITimeProvider; import ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetUploadClientModel.NewDataSetInfo.Status; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/DataSet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/DataSet.java index c863cd75749f75c65e1b26f27e71a044ebc4e672..0310df4a857ac242106c8d7cca2e84e4dfc3a765 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/DataSet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/DataSet.java @@ -29,7 +29,7 @@ import java.util.regex.Pattern; import ch.systemsx.cisd.common.api.retry.Retry; import ch.systemsx.cisd.common.api.retry.RetryCaller; import ch.systemsx.cisd.common.api.retry.RetryProxyFactory; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalDataManagementSystem; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDataSetDss.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDataSetDss.java index 04203ace1c5945b281c5f8aeb8d85958b20f9f56..16ac29d5777bb092515e9841b59b5d488a6910b2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDataSetDss.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDataSetDss.java @@ -20,7 +20,7 @@ import java.io.File; import java.io.InputStream; import ch.systemsx.cisd.common.api.retry.Retry; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDssComponent.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDssComponent.java index 62a301f86d93d109e0ffd8edfd38d4a07542208f..6ea58ccdaebec45b5a3332c650d60ce1fbc93911 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDssComponent.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/IDssComponent.java @@ -22,8 +22,8 @@ import java.util.List; import java.util.Map; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/ISimpleOpenbisServiceFacade.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/ISimpleOpenbisServiceFacade.java index 7fd1f43aded3036e20ccc7e6a89767740560ed98..199fc69a864b69b7d894ebf6836528dcf6a8fad5 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/ISimpleOpenbisServiceFacade.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/ISimpleOpenbisServiceFacade.java @@ -22,8 +22,8 @@ import java.util.List; import java.util.Map; import ch.systemsx.cisd.common.api.retry.Retry; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DataSetDss.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DataSetDss.java index 17dcc3e150809d17561b87bc6e9ec6ef2ef6576d..93acd76dc2872fcc1ee591a77fcc93d349b7aa44 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DataSetDss.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DataSetDss.java @@ -22,7 +22,7 @@ import java.io.InputStream; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java index ed5a94562e1e7b1e6a71b24c68b88dd735a160d0..d89689c129b98ef19a867bda978a4b49bfc0b275 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java @@ -43,10 +43,10 @@ import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.api.IRpcServiceFactory; import ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java index 2b026817a8f6bbec6bc09e9d90eda0aa08beb694..36b32cfc5e8673d2dc37285febca2336b11a4051 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java @@ -28,9 +28,9 @@ import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.api.retry.RetryCaller; import ch.systemsx.cisd.common.api.retry.RetryProxyFactory; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet; import ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java index 184a27245602e46b3a3c3f9814c497f4fef5b965..6e13a91488e3c79169f65d70556e52aea858e320 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java @@ -37,8 +37,8 @@ import javax.servlet.http.HttpSession; import org.apache.commons.io.IOUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java index 5ec6bd80f8e3ccfcaa0d0170d43ea03d2aca1b7b..b08582f26b05bc40b064e83098de368fb7bf7c74 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java @@ -26,7 +26,7 @@ import javax.servlet.http.HttpServletRequest; import javax.servlet.http.HttpServletResponse; import javax.servlet.http.HttpSession; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.graph.ITabularDataGraph; import ch.systemsx.cisd.openbis.dss.generic.server.graph.TabularDataGraphCollectionConfiguration; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/CIFEXRPCServiceFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/CIFEXRPCServiceFactory.java index 656fdf9b158f1b6c53d2b88431c70f7f51e21623..180a1e316a04d65785d39510683320da80a6c270 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/CIFEXRPCServiceFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/CIFEXRPCServiceFactory.java @@ -20,7 +20,7 @@ import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; import ch.systemsx.cisd.cifex.rpc.client.IncompatibleAPIVersionsException; import ch.systemsx.cisd.cifex.rpc.client.RPCServiceFactory; import ch.systemsx.cisd.cifex.shared.basic.Constants; -import ch.systemsx.cisd.common.exception.MasqueradingException; +import ch.systemsx.cisd.common.exceptions.MasqueradingException; final class CIFEXRPCServiceFactory implements ICIFEXRPCServiceFactory { diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParameters.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParameters.java index 08e0d6739eb8da0978f1cc10d5289715695f32b1..0ecafb81c368d982742af911576164d0aa67e9fb 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParameters.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParameters.java @@ -25,7 +25,7 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java index dc6ef592b705c93c5b372a4e7373389346bbca5e..9b02a0d0c8894abe14129c78b845669b30779853 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java @@ -57,8 +57,8 @@ import com.marathon.util.spring.StreamSupportingHttpInvokerServiceExporter; import ch.systemsx.cisd.common.api.IRpcServiceNameServer; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.logging.LogInitializer; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java index aef5328702350ee0f2ee6c486758bceee89bd084..141d94f5f85b0f60a21a59701a01cdcc4877bc63 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java @@ -30,9 +30,9 @@ import org.springframework.beans.factory.InitializingBean; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.common.filesystem.QueueingPathRemoverService; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java index 1b6870116c80dea41a65a61937eb5ae09a27ea51..23cda149d274cc5cc674223f0ab4d35c6107562f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java @@ -21,7 +21,7 @@ import java.util.Map; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; +import ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException; import ch.systemsx.cisd.common.resource.IInitializable; import ch.systemsx.cisd.common.serviceconversation.ServiceMessage; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java index 10dba900a279fda929d2ad99cab9e90d59d82e15..f300d402a45daf0d3a3858893f295fc87a8b6317 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java @@ -34,9 +34,9 @@ import javax.servlet.http.HttpSession; import org.apache.commons.io.IOUtils; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewConfiguration.java index 0d3b0a05e83afd1a7fb94dbb576ff4e14a7cd2a8..648c0bc055048a5babb27084c4c908c7100f9334 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewConfiguration.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewConfiguration.java @@ -23,7 +23,7 @@ import java.util.Map.Entry; import java.util.Properties; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java index 931862ef0a085204b2986c55d6943f0df6b23fc4..f0d32b0cd8e03492a966cc2e2d290bcd794f15ae 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java @@ -24,7 +24,7 @@ import javax.servlet.http.HttpServletRequest; import javax.servlet.http.HttpServletResponse; import javax.servlet.http.HttpSession; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.DatasetImageOverviewUtilities; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetSessionAuthorizer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetSessionAuthorizer.java index ce8b28d37771ab4e8891be787f34a27e2c24dd8c..00e17095f85d4b15c08f38e8effaf61653484ec8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetSessionAuthorizer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetSessionAuthorizer.java @@ -20,8 +20,8 @@ import java.util.List; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcAuthorizationAdvisor.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcAuthorizationAdvisor.java index 6b1fb717b3ec22efd05bcc77060599c2ac4b2446..cf2020165dd1699e6f8d50be5f86896426dd544d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcAuthorizationAdvisor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcAuthorizationAdvisor.java @@ -28,8 +28,8 @@ import org.apache.log4j.Logger; import org.springframework.aop.support.DefaultPointcutAdvisor; import org.springframework.aop.support.annotation.AnnotationMatchingPointcut; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.reflection.AnnotationUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedFilteredBasicOpenBISService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedFilteredBasicOpenBISService.java index 9e37cb6297564aa43bb880f98657572a3b1eccf9..f5726caf71b2a9f5eb101eb2d6fb3c0231dc0e12 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedFilteredBasicOpenBISService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedFilteredBasicOpenBISService.java @@ -20,7 +20,7 @@ import java.util.Collection; import java.util.List; import ch.systemsx.cisd.common.action.IMapper; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.AuthorizationHelper; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedBasicOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java index 020f327ba9e368c1fdd01d4379ab7adc7eeb8d32..a11e97a5dafcf3c5828e2cc0ab2ad1205fa41d0d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java @@ -24,7 +24,7 @@ import org.apache.commons.lang.time.DateUtils; import org.apache.log4j.Logger; import org.springframework.beans.factory.FactoryBean; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java index 674155eaf4946bf3a4cc1d4c7f3dacfe6de876df..9e64544eb8f61ecc5152f828eddf406a9a4157ff 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import java.io.File; import java.io.IOException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/LocalDataSetFileOperationsExcecutor.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/LocalDataSetFileOperationsExcecutor.java index 028dc83902df0290f4f3e8b4a507501846db0504..93d93ae0570fda4058d25912d451330e14f2f998 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/LocalDataSetFileOperationsExcecutor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/LocalDataSetFileOperationsExcecutor.java @@ -29,8 +29,8 @@ import java.util.Map.Entry; import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ExceptionWithStatus; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ExceptionWithStatus; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommand.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommand.java index dfad196acea66ec65dab52d32a4701c6346d0ce6..e889bcb57b41ced8694a127ef0dbf3011cf77419 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommand.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommand.java @@ -24,8 +24,8 @@ import javax.activation.DataHandler; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.EMailAddress; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RemoteDataSetFileOperationsExecutor.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RemoteDataSetFileOperationsExecutor.java index 4f41f9d1059b355029cd6e70c573c87cd5693a71..4f39eca0a21a60b45e92fa4852e048e491c10c04 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RemoteDataSetFileOperationsExecutor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RemoteDataSetFileOperationsExecutor.java @@ -25,8 +25,8 @@ import java.util.Map; import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ExceptionWithStatus; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ExceptionWithStatus; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/SessionTokenManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/SessionTokenManager.java index 615b14836dfc4c91e791034a53d09df06ceaed10..2431d7044809daf22d51d006737b656998f797b7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/SessionTokenManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/SessionTokenManager.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; +import ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException; import ch.systemsx.cisd.common.security.TokenGenerator; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManager.java index fd0f728a1e7dc4e005550f04e78abcb2fd9b4c9d..8cbf5850d1259ed907afc4f399abec301ca2a825 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManager.java @@ -28,7 +28,7 @@ import java.util.concurrent.TimeUnit; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.dss.generic.shared.Constants; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpServer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpServer.java index 2662df71e6d754366d9ab57a9827033c61bf65f6..995d46a4bdb6f111127a7428e665c0d39993ac3b 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpServer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpServer.java @@ -70,7 +70,7 @@ import org.apache.sshd.server.session.ServerSession; import org.apache.sshd.server.sftp.SftpSubsystem; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java index 5ea7717addb838649846ceb10c041012fcdbb938..5aed27c597ff8070f7050467d390ab33463d6260 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java @@ -31,7 +31,7 @@ import org.apache.ftpserver.ftplet.FtpFile; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.string.Template; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java index 3c46b3f3003a9cf79b171616e33e041df6e2b3af..f4d697ee098be82b69051247fd54c9bf6c0c55f1 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java @@ -26,7 +26,7 @@ import java.util.HashMap; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptor.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptor.java index 440ca661b5ba59d3bbe88497e2f22083cc88aad5..62b5e92b2c883ae768628be5689db1c83e282b4a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptor.java @@ -20,8 +20,8 @@ import org.aopalliance.intercept.MethodInterceptor; import org.aopalliance.intercept.MethodInvocation; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java index 1a2bed2a591baa8f5b964f954e9d705539dbd1fb..d02b5396a24c6bb62be83e51d2f6b9fb77de2826 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractTabularDataGraphServlet; import ch.systemsx.cisd.openbis.dss.generic.server.graph.TabularDataGraphCollectionConfiguration; import ch.systemsx.cisd.openbis.dss.generic.server.graph.TabularDataGraphConfiguration; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoArchiver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoArchiver.java index 35c7816c86e3e5fb068c666a5e23f242d9f7e943..d12e417127cf2b09caab004b7f050b02e85c2681 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoArchiver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoArchiver.java @@ -23,8 +23,8 @@ import java.util.List; import java.util.Properties; import java.util.Set; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractArchiverProcessingPlugin; import ch.systemsx.cisd.openbis.dss.generic.shared.ArchiverTaskContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/IProcessingPluginScriptRunner.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/IProcessingPluginScriptRunner.java index ceb94e08e8ab9a3c5ad15d068776660747aa146d..ba411af08da74ab166eda5e79c5e1494ed57dc80 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/IProcessingPluginScriptRunner.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/IProcessingPluginScriptRunner.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; public interface IProcessingPluginScriptRunner diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPlugin.java index 14aeb6089997f25424bdf63212afb9a7ce5e7a18..2b7f5ba98c6abbcc035218b51aae03be7008418c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPlugin.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java index 2923145a56f20cd7fd7cad28101c5f1945c767b9..ea728ec1addfb39d1822394efd2dd994ee6eeb79 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java @@ -23,7 +23,7 @@ import java.util.Map; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.jython.evaluator.Evaluator; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/ReportingBasedProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/ReportingBasedProcessingPlugin.java index e66a394f6730b46f33f3e32f17f5771d68971599..53a55a1f840722dd9e0d742dc89803ca38a94760 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/ReportingBasedProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/ReportingBasedProcessingPlugin.java @@ -24,7 +24,7 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/Utils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/Utils.java index bf01ab755f8ec22610c145b3ccd6670644cb31f5..928499948340c4a6ddde3c06e5d15eecb65cda8d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/Utils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/Utils.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ExceptionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TableModel; import ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPlugin.java index d5d4eb82a90fd587cbdb9179c86eff19ee3f1d80..bac63dbcba8bada5d75f64db0f12ac84d8237340 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPlugin.java @@ -32,8 +32,8 @@ import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; import ch.systemsx.cisd.common.filesystem.SimpleFreeSpaceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDataMergingReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDataMergingReportingPlugin.java index 7994d889076c1cad6e533d2c4217bd100e428a72..04e651eeb6fefe9b1333e89011ad855a0694ccc0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDataMergingReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDataMergingReportingPlugin.java @@ -23,7 +23,7 @@ import java.util.List; import java.util.Properties; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.parser.ParserException; import ch.systemsx.cisd.common.parser.ParsingException; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java index 5c2aa2ff9d37efded1455f9da09a244f56540d87..f63bb2159f8ecb52be3e0e7c0f600ef216c6bc6a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java @@ -23,7 +23,7 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDropboxProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDropboxProcessingPlugin.java index 6a15ab172570a90a859a10d5ed62211fb28a2c94..11e12fcafcb776a55491c24723b09b02a6c26f32 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDropboxProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDropboxProcessingPlugin.java @@ -23,7 +23,7 @@ import java.util.List; import java.util.Properties; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.mail.IMailClient; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractFileTableReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractFileTableReportingPlugin.java index 10114fca9304c765846b0f427d2617513948fc21..af4a3e752c7f1bbdbfb5f82ba43a98242c880716 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractFileTableReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractFileTableReportingPlugin.java @@ -29,7 +29,7 @@ import org.apache.poi.ss.usermodel.Workbook; import com.csvreader.CsvReader; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.parser.ParserException; import ch.systemsx.cisd.common.parser.ParsingException; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/Copier.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/Copier.java index 514a2d93bfe723706093f956ca2d9ad5a60c5ea7..f46832ef3ac98a138b154436782d1b639ae7d904 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/Copier.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/Copier.java @@ -24,8 +24,8 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.HostAwareFile; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java index 539814b76eed04ad02463e66d86ea37c4106d634..4f6c4fcd4ca005c58eb4a98b69a37945ac24cbb8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java @@ -30,7 +30,7 @@ import java.util.TreeMap; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.io.IOUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsers.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsers.java index d02037895321188cb6f773c0fcf66e59244ed1ad..0822e1af601e40617d677271dbede22f0621a85d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsers.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsers.java @@ -22,7 +22,7 @@ import java.util.Map; import java.util.Properties; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.utilities.ITimeProvider; import ch.systemsx.cisd.common.utilities.SystemTimeProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManager.java index d2edb5330f9faf321bda3574162005ac0a700ee7..cfe9d747af8b2d37e627a292bb02968b57a198b5 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManager.java @@ -23,8 +23,8 @@ import org.apache.commons.lang.time.DateUtils; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ExceptionWithStatus; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ExceptionWithStatus; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DecoratingTableModelReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DecoratingTableModelReportingPlugin.java index f8139ee9da06700274ef9f166b98da93370f2f24..a5c2f1dd094f068172d2565ebb7922e948e16f46 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DecoratingTableModelReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DecoratingTableModelReportingPlugin.java @@ -21,7 +21,7 @@ import java.util.List; import java.util.Properties; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.reflection.ClassUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/EntityLinksDecorator.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/EntityLinksDecorator.java index 48bef0106296ae0c7d049d932d2902654f45401b..b37312a635b8e038432fb751b6fd170f4652b04c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/EntityLinksDecorator.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/EntityLinksDecorator.java @@ -22,7 +22,7 @@ import java.util.List; import java.util.Map; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/HighWaterMarkChecker.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/HighWaterMarkChecker.java index cf1985bee0c6cc3796dae98a277a9855822d0d88..eba63843fdd249f2de70d7fbcf0511c567e3817c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/HighWaterMarkChecker.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/HighWaterMarkChecker.java @@ -3,7 +3,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard; import java.io.File; import java.io.Serializable; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.highwatermark.HighwaterMarkWatcher; import ch.systemsx.cisd.common.filesystem.highwatermark.HighwaterMarkWatcher.HighwaterMarkState; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IDataSetFileOperationsManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IDataSetFileOperationsManager.java index d6d39ebcf20bfbabc4702cb6b875696c5e2d6411..adb03a60ec7d3f6f838625d07d984fc6937eef73 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IDataSetFileOperationsManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IDataSetFileOperationsManager.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard; import java.io.File; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IStatusChecker.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IStatusChecker.java index 52cef128b49b989ef1ebeb22a43b3a960052618a..8096fe2a0e462eed9a3911f50f6e7f062f174a65 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IStatusChecker.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/IStatusChecker.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; /** * @author Izabela Adamczyk diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/MergedRowDataReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/MergedRowDataReportingPlugin.java index fe7423efd896a577665779b6a037e453636f0bf0..636a26801a9b97d36a662e507ba2654c6003528d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/MergedRowDataReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/MergedRowDataReportingPlugin.java @@ -23,7 +23,7 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java index a5feb8361a70c7b5164a572bc52c9c5723b3ece4..d33cf766d11cf8a9bb374cb3f99d507f78488b76 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java @@ -25,8 +25,8 @@ import java.util.Properties; import org.apache.commons.io.FileUtils; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java index 372d0c99850c96b4062eef2cc9712202a0d69452..98b6376a8ad664b5b4ec6448fd99c9ba58ebddb3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java @@ -20,7 +20,7 @@ import java.io.File; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/AbstractPluginTaskFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/AbstractPluginTaskFactory.java index 062483d62663abc7c197c3530d932bcfcb4003fd..10af3443b24c310b7383f7cc0cd42bb4b186a1a2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/AbstractPluginTaskFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/AbstractPluginTaskFactory.java @@ -30,8 +30,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.ExtendedProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/ArchiverPluginFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/ArchiverPluginFactory.java index 68e98131e804d724db268065682bfe93ca1f5029..19556ab6f75fbb9d5a73ff5857ba02cb102bc689 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/ArchiverPluginFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/ArchiverPluginFactory.java @@ -23,7 +23,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DataSourceProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DataSourceProvider.java index 314ca4d00f1a4469617e3bdff1fec18e7885e4c6..d7e20b1b55f66a1c3b9a61a6ddcdd92dfe77d479 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DataSourceProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DataSourceProvider.java @@ -24,7 +24,7 @@ import javax.sql.DataSource; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DefaultDataSourceFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DefaultDataSourceFactory.java index eac0a745585a57ccba4b8ce0f6c9de408822cd2e..ad60a328c613118ac15f1efa9be115c344a03a9f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DefaultDataSourceFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/DefaultDataSourceFactory.java @@ -20,7 +20,7 @@ import java.util.Properties; import javax.sql.DataSource; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.reflection.BeanUtils; import ch.systemsx.cisd.common.reflection.ClassUtils; import ch.systemsx.cisd.dbmigration.DBMigrationEngine; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedBasicOpenBISService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedBasicOpenBISService.java index 7fcd3356fb2a9668fc2590589e1a13a11b2f97cf..ff9b11027679f1f237cf7a9ed2353b2fef160819 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedBasicOpenBISService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedBasicOpenBISService.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.util.Collection; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetTypeWithVocabularyTerms; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedOpenBISService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedOpenBISService.java index 50371e28074d740b54714a53331e5ed3a0d6f55e..4a442836d1e7ab467d0f7fece55d37b5880d23dd 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedOpenBISService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IEncapsulatedOpenBISService.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.util.Date; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; import ch.systemsx.cisd.openbis.generic.shared.basic.EntityOperationsState; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IPostRegistrationDatasetHandler.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IPostRegistrationDatasetHandler.java index 0366d2eda829faee9611aa694ebd092dd8776829..c86eee95b8df8533479214debe636a7aa3add475 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IPostRegistrationDatasetHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IPostRegistrationDatasetHandler.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.io.File; import java.util.Map; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/ProcessingStatus.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/ProcessingStatus.java index daead6faf94bd53fcf2c3468d47d3c1f4f4a2a0a..cd55267f5e719ab5d719b9657bd45dcab07dc121 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/ProcessingStatus.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/ProcessingStatus.java @@ -22,7 +22,7 @@ import java.util.List; import java.util.Map; import java.util.Map.Entry; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/QueueingDataSetStatusUpdaterService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/QueueingDataSetStatusUpdaterService.java index 3a9f06d519f5f7d4eaf442e822f0773dce9fffca..3cbb4f606b9497a68603e3ccd314674118cb628b 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/QueueingDataSetStatusUpdaterService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/QueueingDataSetStatusUpdaterService.java @@ -26,7 +26,7 @@ import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; import ch.systemsx.cisd.base.io.ICloseable; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.collection.IExtendedBlockingQueue; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.PersistentExtendedBlockingQueueDecorator; import ch.systemsx.cisd.common.io.PersistentExtendedBlockingQueueFactory; import ch.systemsx.cisd.common.io.QueuePersister; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/AbstractDataSetAccessPredicate.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/AbstractDataSetAccessPredicate.java index dad57810bcba5746336e32e2de742217027f6837..0e233beecf0687c16498a68bd7887997bf0f0cbf 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/AbstractDataSetAccessPredicate.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/AbstractDataSetAccessPredicate.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Abstract super class of all implementations checking data set access. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/DssSessionAuthorizationHolder.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/DssSessionAuthorizationHolder.java index 2184993c180211339a696ac4f622be1393d36f44..d5c81e08d347f001356221e44d8a2c33600b8761 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/DssSessionAuthorizationHolder.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/DssSessionAuthorizationHolder.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SpaceIdentifier; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IAuthorizationGuardPredicate.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IAuthorizationGuardPredicate.java index 5c88d7b84f2f13cf6267a9e2222b7489dc0761f4..524a601e79133d73ca364b4c368e720132737459 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IAuthorizationGuardPredicate.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IAuthorizationGuardPredicate.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.IDataSetPredicate; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IDssSessionAuthorizer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IDssSessionAuthorizer.java index f142ffd3b6b637ce7a3996e98faa3b3086d4e644..35fdba6e44dd53697eaa0b57be944db4038b6219 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IDssSessionAuthorizer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/IDssSessionAuthorizer.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SpaceIdentifier; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/NewDataSetPredicate.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/NewDataSetPredicate.java index e04841e3e5d40a39b4af925355effc8fbd7ef652..5db377bab0cfe4d2138b8592275e4cebae6753aa 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/NewDataSetPredicate.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/authorization/NewDataSetPredicate.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization; import java.util.Arrays; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetImmutable.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetImmutable.java index 8e3f73161d74792f1912ae26df068379b26448a9..a0f3b53d65b4fa5e4f0f50745a670d15e2247f64 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetImmutable.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetImmutable.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.FileFormatType; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/AbstractDatasetDropboxHandler.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/AbstractDatasetDropboxHandler.java index 425ed6abde382e14e1a73453bb02f2c27dbbc632..9ab148aab172b6df0b1ad208db00fc05e2f39c51 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/AbstractDatasetDropboxHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/AbstractDatasetDropboxHandler.java @@ -25,9 +25,9 @@ import java.util.concurrent.Callable; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.IFileOperations; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java index 138844ae6f4a70051bf8754de57b96b9825e7fcf..ee44ebe9ef3289a7564ac0e8825f5285761bd9f8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java @@ -25,7 +25,7 @@ import java.util.List; import com.csvreader.CsvReader; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author Piotr Buczek diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetFileLines.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetFileLines.java index 211cc92ff22cb0f83aadecfc87ed7885f386349e..2b6f599e09d76538bb2bcde4b32756d71fac3f74 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetFileLines.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetFileLines.java @@ -22,7 +22,7 @@ import java.util.List; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.CodeNormalizer; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetLocationUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetLocationUtil.java index 4d0650a5c074e7868559657ca9d537fe3f21222a..7fe01fb8d5198921e55a3f184277ad720ff19e20 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetLocationUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DatasetLocationUtil.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.utils; import java.io.File; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.security.MD5ChecksumCalculator; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DatabaseInstance; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtil.java index 4a20a959a63c11e42d3f05b6bbea181a37016213..3b8e3f30b5de17a1b263b1e03cd7844b3ba4f020 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtil.java @@ -22,7 +22,7 @@ import java.util.Properties; import java.util.Set; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ExcelFileReader.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ExcelFileReader.java index f8881af225965d886cca31200c4ea4e290e657a8..3334e7b431672cbcc3f9ec1300add1906577824e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ExcelFileReader.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ExcelFileReader.java @@ -35,7 +35,7 @@ import org.apache.poi.ss.usermodel.Workbook; import org.apache.poi.ss.util.CellReference; import org.apache.poi.xssf.usermodel.XSSFWorkbook; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java index c70f19fbbc378a1538002cc14e86f8e5c69fd9c9..478d9e2a74a15f6a5cfd4f87202da7d90116fc68 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java @@ -45,7 +45,7 @@ import ar.com.hjg.pngj.PngWriter; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.io.IRandomAccessFile; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.image.IntensityRescaling; import ch.systemsx.cisd.common.image.IntensityRescaling.GrayscalePixels; import ch.systemsx.cisd.common.image.IntensityRescaling.Levels; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtils.java index b564f3f037acc10e41f428b16073b09b78e4b8eb..4039dd3ebc2da78fef1e1f15186437a036970dc7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtils.java @@ -34,9 +34,9 @@ import org.apache.commons.io.FileUtils; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.HostAwareFile; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/AbstractStorageProcessorWithDropboxTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/AbstractStorageProcessorWithDropboxTest.java index 72330c2fcf9ddac4652d98bfc9dfdeecde61e890..4037b0ef9ec589d9955d191cf4b91cca2bc5bc49 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/AbstractStorageProcessorWithDropboxTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/AbstractStorageProcessorWithDropboxTest.java @@ -25,7 +25,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.IStorageProcessorTransaction; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProviderTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProviderTest.java index 202a21031527a312079386e9e938bcc4fec44eb5..c747491fa756d412d516b34701203cbc1386070d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProviderTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetNameEntitiesProviderTest.java @@ -22,7 +22,7 @@ import static org.testng.AssertJUnit.fail; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Test cases for corresponding {@link DataSetNameEntitiesProvider} class. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithmTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithmTest.java index 65c2905d63ca3dd5fd4287afb2be0b78133f070f..9adacc7e75abec472abea24b99b9d21f766ae90b 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithmTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithmTest.java @@ -30,7 +30,7 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedActionWithResult; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractorTest.java index db20ca01db6496909ac3e6934a995d6e3b2def4c..59e4317c8d8195855c1e208b5470e5f8118cb166 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/DefaultDataSetInfoExtractorTest.java @@ -30,7 +30,7 @@ import java.util.Properties; import org.testng.annotations.BeforeTest; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.parser.MandatoryPropertyMissingException; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategyTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategyTest.java index 4bfaa5df86a897644cc2621faaa042f8bc17299f..f7630fa1ceb4f388088693f14f6572b7514b92b0 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategyTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/IdentifiedDataStrategyTest.java @@ -24,7 +24,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.ExperimentIdentifier; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandlerTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandlerTest.java index f94839c4ee84cf57894b925fe1af760e5a6ca3a7..3a03e52f5ea83bf0f851cc1f4ac6c41f69aa0684 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandlerTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandlerTest.java @@ -41,8 +41,8 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.QueueingPathRemoverService; import ch.systemsx.cisd.common.logging.BufferedAppender; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTaskTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTaskTest.java index 1be6707839051eea6d367a03c089c76e3a113dc6..5260b4284b92afcc303e5dc35e84744b2554d243 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTaskTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/ArchivingPostRegistrationTaskTest.java @@ -31,7 +31,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.test.LogMonitoringAppender; import ch.systemsx.cisd.openbis.dss.generic.shared.ArchiverTaskContext; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTaskTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTaskTest.java index 5b60ceb1eb3d5448a9cec82f74d425ee8b297f4f..b678a980837ada7f40d4fa1c5e2e21bc4c4f716c 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTaskTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/postregistration/EagerShufflingTaskTest.java @@ -35,7 +35,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2DyingProgram.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2DyingProgram.java index 0c4180ce16864e755f02107966f6834c4937538e..9240a9d59dcac3b617652b9e7e8c8ff97ecd5993 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2DyingProgram.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2DyingProgram.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.ExperimentIdentifier; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2FileNotFound.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2FileNotFound.java index ff6201724098b76f06cc3aea1e7a375bfda88cd9..8d36c5b07a7fbf0c19e0749eb8ca38e867048a53 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2FileNotFound.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2FileNotFound.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2SimpleTestcase.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2SimpleTestcase.java index c9f39b45ad1a4376e453ed7489ac290f3179e50d..d4c50d5dbb6dd4a49ed03ffe32f7dbeb5c956724 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2SimpleTestcase.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2SimpleTestcase.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.etlserver.registrator; import java.io.File; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePostregistrationHookFailed.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePostregistrationHookFailed.java index 6d799275251e1ce9065e25764e595baf148d5782..38fabec0a43ef048ffb425e29506465e37f1dc57 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePostregistrationHookFailed.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePostregistrationHookFailed.java @@ -17,7 +17,7 @@ package ch.systemsx.cisd.etlserver.registrator; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePreregistrationHookFailed.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePreregistrationHookFailed.java index 83f9041a91867d22d8de1dc2486caed406a34b37..1312e721fce0a5736cad2b24a0bced8ef173045d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePreregistrationHookFailed.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcasePreregistrationHookFailed.java @@ -17,7 +17,7 @@ package ch.systemsx.cisd.etlserver.registrator; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRegistrationContext.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRegistrationContext.java index 8d0fa4c59735aff110eb78e4c5a02b9b3f4b860a..f48cab65de280eccf0f3acc7320c55381803f69b 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRegistrationContext.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRegistrationContext.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver.registrator; import java.io.IOException; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRollback.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRollback.java index d1135c2edcd3fb2d9dbc754a6845ae7509bfc519..350e2eda670d7ffd4a9b33bf978dcfc8f9dbe642 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRollback.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseRollback.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseWithoutPostStorage.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseWithoutPostStorage.java index 12c8b696ead300d4bef7c530e7b942981bdb72f2..db7257d6be56b6984c41f550486e9c79b5ec9c19 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseWithoutPostStorage.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JavaV2TestcaseWithoutPostStorage.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.etlserver.registrator; import java.io.File; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; import ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonDropboxRecoveryTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonDropboxRecoveryTest.java index d640cb5de85623d2813e94013b0072571deb7406..67c99895773d3975c60d4d18928976462f90fd3a 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonDropboxRecoveryTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonDropboxRecoveryTest.java @@ -30,8 +30,8 @@ import org.jmock.lib.action.CustomAction; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.test.RecordingMatcher; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java index 5c0ffebb0d2f6ee7d36f26a4afd759083fff33ef..6df20e19662951f1e39480b6c50ff062868d1045 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java @@ -41,9 +41,9 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.NotImplementedException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.TestBigStructureCreator; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandler.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandler.java index 1bcdf67f3ee543b3d44d94b4bdc0b4a4d0e51558..2fad00a1b3ad143d5a2ee64cdb763f6e1c16d3d8 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandler.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandler.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerJavaV2.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerJavaV2.java index 2296193ed6557e7dc0e4c06c1d6fe7d7065f428a..c48a6af2c35fce6f43a6b4153d0caebec9bd072a 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerJavaV2.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerJavaV2.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction; import ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerV2.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerV2.java index 0ea836f58488af48bc6c6c94d4d43cd4a2f2801b..3499ef2ace8413a0fb71a7e8ec357817eeb894ef 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerV2.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/TestingDataSetHandlerV2.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.etlserver.registrator; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction; import ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExceptionThrowingStorageProcessor.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExceptionThrowingStorageProcessor.java index 51fbdbbb8dc4fdd886dc6d337de19a377db2e883..720c4cd8ab5248c54d3cea4cefc75893cdc56718 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExceptionThrowingStorageProcessor.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ExceptionThrowingStorageProcessor.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.etlserver.registrator.api.v1.impl; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.etlserver.DefaultStorageProcessor; import ch.systemsx.cisd.etlserver.FileRenamer; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForDataAcquisitionTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForDataAcquisitionTest.java index 7159998b97836feffcb64f94135d7193ad1c8365..4ab98db8d3bffede2c109aca0e8517d31b29ec6e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForDataAcquisitionTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForDataAcquisitionTest.java @@ -25,7 +25,7 @@ import java.util.Properties; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.etlserver.CodeExtractortTestCase; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForImageAnalysisTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForImageAnalysisTest.java index 66c1b40f5bea69d6a7315ffdcd3abe4a874c462b..4b4330019a04a9c64ccbabd7103e51b57086a519 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForImageAnalysisTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/threev/DataSetInfoExtractorForImageAnalysisTest.java @@ -24,7 +24,7 @@ import java.util.Properties; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.etlserver.CodeExtractortTestCase; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTableTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTableTest.java index 7ded0f1202db9e776b4b87fc66fa4cc5a74d99f4..ca5c49356122b5b7da37f526247c2ba840f966f9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTableTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/utils/TabSeparatedValueTableTest.java @@ -22,7 +22,7 @@ import java.util.List; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinitionTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinitionTest.java index 0a0cb4e7b476da19be8a8dc6ff670f7851aaac0b..4e3eb794b3d3101789718680e4dc241230bb4da0 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinitionTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/ColumnDefinitionTest.java @@ -23,8 +23,8 @@ import org.testng.AssertJUnit; import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * A test that focuses on the creation of ColumnDefinitions to make sure that useful error messages diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSVTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSVTest.java index 541e55366562a2059010f806db27f98a5f627e03..d6efb51c1957034dffb3b5ace78e3621b24e8bdb 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSVTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorForTSVTest.java @@ -25,8 +25,8 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; /** diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorTest.java index f274743d14b6970c29efd6bf690209d092f73eb4..b1d73bd188a987d4df91cce1403b8058d27dbf7d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/DataSetValidatorTest.java @@ -23,8 +23,8 @@ import java.util.Properties; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.test.AssertionUtil; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactoryTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactoryTest.java index 6acabef6f67605edd466dc27d1084c621d10a41f..9856f71c48f3ba9aae2d87628903c87d72334c83 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactoryTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/HeaderBasedValueValidatorFactoryTest.java @@ -23,8 +23,8 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactoryTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactoryTest.java index 704fe17a572e874ad5db5b06dcb18246becd6ec8..8a7d7a88b4e41762f1916de6ce5990923f07d87d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactoryTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/NumericValidatorFactoryTest.java @@ -21,8 +21,8 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/StringValidatorFactoryTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/StringValidatorFactoryTest.java index c6cb97bd3fc9b8014945e0ce417f7cf07301bc3a..4886fd4ebffb548be6cdb93445d0bf67b0ede01e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/StringValidatorFactoryTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/StringValidatorFactoryTest.java @@ -21,8 +21,8 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactoryTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactoryTest.java index 9f8f1e1d785cd20c1be2d959798d27657b2d93d8..51f3af8da1f9b58d197e31af3e7113e70f485ab9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactoryTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueGroupValidatorFactoryTest.java @@ -21,8 +21,8 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Test cases for {@link UniqueGroupValidatorFactory}. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactoryTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactoryTest.java index 19649109bc6e8aa163a37ac6c550284da08acdec..48949fdb626159b0e2ce1aeb4cd2ac01d5f929e3 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactoryTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/validation/UniqueValidatorFactoryTest.java @@ -21,7 +21,7 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/DssComponentTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/DssComponentTest.java index 63b534b0c660e3e9d5187fe648e08c7e485acfae..7fbb010e1c171f1955434787c41a4e49fc71354c 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/DssComponentTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/DssComponentTest.java @@ -33,7 +33,7 @@ import org.apache.commons.lang.time.DateUtils; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.etlserver.DssRegistrationLogDirectoryHelper; import ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/OpenbisServiceFacadeTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/OpenbisServiceFacadeTest.java index 60b1ba8070f24ebafd6574276bb734a6a468ab9a..fb6da2c0ea0757aa217a8265d457a4600e67e774 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/OpenbisServiceFacadeTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/OpenbisServiceFacadeTest.java @@ -32,7 +32,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet; import ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java index 9db800153367963a0c142a7c6b2cf73df7893639..50c2bd757db1e842ed58aafe11d0aeb1f4f0712d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java @@ -48,9 +48,9 @@ import ch.systemsx.cisd.common.api.IRpcService; import ch.systemsx.cisd.common.api.IRpcServiceFactory; import ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParametersTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParametersTest.java index 53a8e1e4149423f4b3488fbb405c1022e60abf17..ef4555c236edd88f2d5788e9c19337b91aa166ad 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParametersTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ConfigParametersTest.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.Constants; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceTest.java index 4ee3ef5f9eabb6c127b3355a6198e3eb100bad4b..2383a286d5399b67d71a113d890acfd9e7edc1be 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceTest.java @@ -30,8 +30,8 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; -import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.mail.MailClientParameters; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IPluginTaskInfoProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommandTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommandTest.java index 6b7604e46ac003803fb2c9e1d6ec63a9cef5bf9d..14b26cf69074294709400f5d6f8e01e4476d3924 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommandTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ProcessDatasetsCommandTest.java @@ -33,7 +33,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.mail.From; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.test.RecordingMatcher; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManagerTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManagerTest.java index ab0fd957d214553d904fefbc5fad9e283b67f45a..bf5e43f45111cf5941012350ea8247f611ea40f6 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManagerTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ShareIdManagerTest.java @@ -28,7 +28,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.common.concurrent.MessageChannel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.openbis.dss.generic.shared.Constants; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java index 801cbefedf71872dab45cd8eac1a60672bd8bbfe..bee8a16dfb72ba75b24befa7c7a58e1838a781aa 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java @@ -47,7 +47,7 @@ import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXUploader; import ch.systemsx.cisd.cifex.rpc.client.gui.IProgressListener; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.mail.MailClientParameters; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java index 2cac5be3df5e1a36fca40fc8c304e6416b46b885..ba0dc8f77f39043c742e5290dbd007175c81c861 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java @@ -38,7 +38,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.test.TrackingMockery; import ch.systemsx.cisd.common.utilities.ITimeProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptorTest.java index dc77b2e1755d958bcf145d31ecea7267bf80bafc..c01dad55687446c80bb2334e21535f2fb1b08ce4 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/openbisauth/OpenBISAuthenticationInterceptorTest.java @@ -30,7 +30,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.dss.generic.server.SessionTokenManager; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.PluginUtilTest; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java index d691fa0b27f647a3a66186294d55b0d108882698..3c0b735de553b36b8ac9a3f479beb5aba7f513df 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java @@ -31,7 +31,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetImmutable; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java index c6ed1fdc3d54a00b53c03b0d26048bec8b321b49..96f3f91a508e35daceadfc700cb7782e375828ee 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java @@ -26,7 +26,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.test.RecordingMatcher; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java index ffcf7d914558b8df2f29d588e95346a1a41d144e..3d64c9fa0b89bdc2cbb763b7d9d5883f892ba7c9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java @@ -28,7 +28,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.test.RecordingMatcher; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPluginTest.java index 977891e931cf1472c908fdce1a4ac35d1765cf6f..4030d00b477b4e54a60c5e189121db6a30527d40 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractArchiverProcessingPluginTest.java @@ -35,7 +35,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.BufferedAppender; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsersTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsersTest.java index 1215e71e90ba768270a7d372bcbd640c149f9b6a..38a2809b60dedfdf97dec3a3e17808ae00223fea 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsersTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierForUsersTest.java @@ -38,7 +38,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.IPathCopier; import ch.systemsx.cisd.common.filesystem.ssh.ISshCommandExecutor; import ch.systemsx.cisd.common.mail.EMailAddress; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierTest.java index 5d7a6d345970619726459abb35e65b0a831ad2a1..9b95adf3442461dd754faa2204cdd7802f7a1868 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetCopierTest.java @@ -38,8 +38,8 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.IImmutableCopier; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManagerTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManagerTest.java index 83f8c392683fc7e2fa741b7d67871abe1a235dd7..07a2a6f65440d824e02bded82c2f919d683c26d6 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManagerTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetFileOperationsManagerTest.java @@ -34,7 +34,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.concurrent.ExecutionResult; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java index ea44393e7a5c6670d27bdc4fd344a5c38d42cd2b..c8a9729e836232946c5f49d3706f16d14dcbd990 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java @@ -42,7 +42,7 @@ import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.io.IRandomAccessFile; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.BufferedAppender; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java index 8af4a09e3b341574630f78b249cbc34d7fd6ebf2..fac4d390249f48a1b1b23b76ce7f0827424d456a 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java index 1783cc980833adb11ee007aae0ceed4ea93d22a0..68f458b79fd98dfa721c3339b22b7a7bbe6eee01 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java @@ -37,7 +37,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtilTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtilTest.java index f08a96fcdf56dc16eca8016ab4a1201f959b69ee..f861d825a8c35d37bb8eff74eaaa7c3bc5488e2a 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtilTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/DssPropertyParametersUtilTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.IFileOperations; /** diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtilsTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtilsTest.java index 06c88986942735b9c133382b09246c36823d5956..7107ef85b2ac68e8415a643c6e1568464eeb4c4e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtilsTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/SegmentedStoreUtilsTest.java @@ -33,7 +33,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.concurrent.MessageChannel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DBMigrationEngine.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DBMigrationEngine.java index e8207f3ae640b53cc5483ee221fe66d3f1edab99..ad91c55aaf1637b71a0ab488a74b85f91dbab7b1 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DBMigrationEngine.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DBMigrationEngine.java @@ -22,8 +22,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.db.ISqlScriptExecutor; import ch.systemsx.cisd.common.db.Script; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.dbmigration.java.IMigrationStepExecutor; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseConfigurationContext.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseConfigurationContext.java index cefeb9483ae71469c843a26434f7b4868f93d82d..438dc2fe930ff949ae499f7c9036170f892bf1e8 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseConfigurationContext.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseConfigurationContext.java @@ -33,7 +33,7 @@ import org.springframework.jdbc.support.lob.LobHandler; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.db.ISequenceNameMapper; import ch.systemsx.cisd.common.db.ISequencerHandler; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseEngine.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseEngine.java index 2fbd282ce326ad5c72ecb2c5bd3c82ed3ec58b20..fc6f2e50fcca26aecf4bc727fbeb076a69f88e24 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseEngine.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/DatabaseEngine.java @@ -27,7 +27,7 @@ import org.springframework.jdbc.support.lob.LobHandler; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.db.ISequencerHandler; import ch.systemsx.cisd.common.db.PostgreSQLSequencerHandler; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.dbmigration.h2.H2DAOFactory; import ch.systemsx.cisd.dbmigration.postgresql.PostgreSQLDAOFactory; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/h2/H2AdminDAO.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/h2/H2AdminDAO.java index fe5d264c6a630365db94891ef197aa406755d845..3943543660992cefe10b34f28a6aa9ff244c9953 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/h2/H2AdminDAO.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/h2/H2AdminDAO.java @@ -31,7 +31,7 @@ import org.h2.tools.DeleteDbFiles; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.db.ISqlScriptExecutor; import ch.systemsx.cisd.common.db.Script; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/DumpPreparator.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/DumpPreparator.java index b99fda9960cca4273478642ced2b611f954b18bc..a73bcec3003c490bb955986dc2e72c85429b1f1c 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/DumpPreparator.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/DumpPreparator.java @@ -42,7 +42,7 @@ import org.apache.commons.io.IOUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.process.ProcessExecutionHelper; import ch.systemsx.cisd.dbmigration.SimpleDatabaseMetaData; import ch.systemsx.cisd.dbmigration.SimpleTableMetaData; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLAdminDAO.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLAdminDAO.java index 637cd2479b225d2439fb04b0359b911cbbd4f8b8..205d17aa45afb9abb81e3a5d051965bf0c975f38 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLAdminDAO.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLAdminDAO.java @@ -28,7 +28,7 @@ import org.springframework.dao.DataAccessException; import ch.systemsx.cisd.common.db.ISqlScriptExecutor; import ch.systemsx.cisd.common.db.Script; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLMassUploader.java b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLMassUploader.java index e39aa8dd0d33278dd676079415dd6ca734d5773a..89a9aeabe153ecdfb5bc524dc30c0c605a9af250 100644 --- a/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLMassUploader.java +++ b/dbmigration/source/java/ch/systemsx/cisd/dbmigration/postgresql/PostgreSQLMassUploader.java @@ -41,7 +41,7 @@ import org.springframework.jdbc.core.simple.SimpleJdbcDaoSupport; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.db.ISequenceNameMapper; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.dbmigration.IMassUploader; diff --git a/dbmigration/sourceTest/java/ch/systemsx/cisd/dbmigration/DBMigrationEngineTest.java b/dbmigration/sourceTest/java/ch/systemsx/cisd/dbmigration/DBMigrationEngineTest.java index 1fd68f479435954b89494bcabe10fb7ffd49778f..e988c84fc9dc8711388c70daac06a013e684adc6 100644 --- a/dbmigration/sourceTest/java/ch/systemsx/cisd/dbmigration/DBMigrationEngineTest.java +++ b/dbmigration/sourceTest/java/ch/systemsx/cisd/dbmigration/DBMigrationEngineTest.java @@ -39,8 +39,8 @@ import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.db.ISqlScriptExecutor; import ch.systemsx.cisd.common.db.Script; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.dbmigration.java.IMigrationStepExecutor; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/DataSetInfoExtractor.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/DataSetInfoExtractor.java index 465f23bffb309f978db8d96a5fdcb94b5cb268da..0e439eb221f585dbfee7afa6cc6e804604b1c617 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/DataSetInfoExtractor.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/DataSetInfoExtractor.java @@ -25,8 +25,8 @@ import java.util.regex.Pattern; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneDataSetInfoExtractor.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneDataSetInfoExtractor.java index e3a6b8f97e9901e500dbfa8af05ebb8d08ccb655..8c7cce90d6e4320c552cd73051aecbead63200d5 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneDataSetInfoExtractor.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneDataSetInfoExtractor.java @@ -19,8 +19,8 @@ package ch.ethz.bsse.cisd.dsu.dss; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java index 6c876e96576566ac094b453f788547ad96468b8d..0eee0c71f64c417cdc10665437ac0fdc086370a0 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java @@ -39,10 +39,10 @@ import org.apache.commons.lang.time.DateFormatUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FastRecursiveHardLinkMaker; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileOperations; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/DataSetToSOFT.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/DataSetToSOFT.java index 88592dd42c5e607b496aa5c70d735ef3d3e44b47..310e5fd6c93c647bf9d55535fa60ce872b953266 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/DataSetToSOFT.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/DataSetToSOFT.java @@ -32,7 +32,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.EMailAddress; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java index 0b420da5e8128aca124f723aef3c30894585a9a2..dceeb800ac5b4875242a633c04cdb76b5b951b5e 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java @@ -22,7 +22,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.xml.JaxbXmlParser; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractTableModelReportingPlugin; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java index 782600c502f94d0adec60b95c667fcffc1781b3f..b32719a2b1f6d1a31a7784ec1142c3124bcaa18b 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java @@ -30,7 +30,7 @@ import org.apache.commons.lang.time.DateUtils; import ch.ethz.bsse.cisd.dsu.tracking.email.EntityTrackingEmailGenerator; import ch.ethz.bsse.cisd.dsu.tracking.email.IEntityTrackingEmailGenerator; import ch.ethz.bsse.cisd.dsu.tracking.utils.LogUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.io.PropertyIOUtils; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.mail.EMailAddress; diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/utils/LogUtils.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/utils/LogUtils.java index 17b7fe6f2e954d71c66f15044e26918f5a1bbfb7..cfd7d992e099e32ba5f37539acd07018625fde1f 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/utils/LogUtils.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/utils/LogUtils.java @@ -18,7 +18,7 @@ package ch.ethz.bsse.cisd.dsu.tracking.utils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java index b6716ac4ad09919446ef4826401175f69ca87164..bc0a8420d28b70e478fa516dca4ee00162708c23 100644 --- a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java +++ b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java @@ -34,9 +34,9 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.base.utilities.OSUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogInitializer; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/AbstractDataSetUploader.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/AbstractDataSetUploader.java index 3f19a6a74c4349b76e07022180c96c5e01818256..aa2754c27a3f89c790a7743bebfc8c785346437c 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/AbstractDataSetUploader.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/AbstractDataSetUploader.java @@ -26,7 +26,7 @@ import javax.sql.DataSource; import net.lemnik.eodsql.QueryTool; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.ExperimentIdentifier; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DBUtils.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DBUtils.java index b68dcb1b62bce641a23a4fbe9ca699f7107e29a6..b692ba24c95c096b69ab16b791e7361e9ec6540a 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DBUtils.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DBUtils.java @@ -21,7 +21,7 @@ import java.util.concurrent.ConcurrentHashMap; import net.lemnik.eodsql.QueryTool; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.reflection.BeanUtils; import ch.systemsx.cisd.dbmigration.DBMigrationEngine; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeader.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeader.java index fae83bd3debb4c845eb37c6dd5670d6f2e389726..f045d82307f92fe613378dc8e56f08d9235c2462 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeader.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeader.java @@ -23,7 +23,7 @@ import java.util.Map; import java.util.regex.Matcher; import java.util.regex.Pattern; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IEntityProperty; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeaderValidator.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeaderValidator.java index 25791ca3a2365d2ce8ba4433a81b5471d0a987e7..9cbf259858952e0fb214426a47c27569c615e4f2 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeaderValidator.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataColumnHeaderValidator.java @@ -26,7 +26,7 @@ import java.util.Properties; import java.util.regex.Pattern; import java.util.regex.PatternSyntaxException; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetHandler.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetHandler.java index 1a28ada68700fe20a5b6967c3caa9aaabf6478b6..7018ee77f3985d03ebd5c158dd2751c24e5134be 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetHandler.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetHandler.java @@ -24,8 +24,8 @@ import java.util.regex.Pattern; import javax.sql.DataSource; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.IFileOperations; import ch.systemsx.cisd.etlserver.AbstractPostRegistrationDataSetHandlerForFileBasedUndo; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetInfoExtractor.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetInfoExtractor.java index 5428ed119921e94f011cdd385634c416e2f5bae0..46c874f19d98c691550f8bc57ea03c4936a849cb 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetInfoExtractor.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetInfoExtractor.java @@ -22,8 +22,8 @@ import java.util.List; import java.util.Map; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.etlserver.cifex.CifexDataSetInfoExtractor; import ch.systemsx.cisd.etlserver.cifex.CifexTypeExtractor; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetPropertiesValidator.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetPropertiesValidator.java index 39018dea594d3dd085a9bfdd315498258afbff53..cc56a671eb00f7dd9e6abf5ebc474a7e0f1ea7b3 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetPropertiesValidator.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetPropertiesValidator.java @@ -23,8 +23,8 @@ import java.util.List; import java.util.Map; import java.util.Set; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetTypeWithVocabularyTerms; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.PropertyTypeWithVocabulary; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetTypeTranslator.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetTypeTranslator.java index 2bf2577343ba8bc75dc2b0ba598366533129d9b5..c0e79f8993a8bb64038317fc499496800d9f73b5 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetTypeTranslator.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetTypeTranslator.java @@ -23,7 +23,7 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetUploaderFactory.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetUploaderFactory.java index e1e02eab08b0dc340c4b9a69a7ab8bf3a4ff8abc..df65eb82d7f6e79377dd6743800915532a1f2765 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetUploaderFactory.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DataSetUploaderFactory.java @@ -22,7 +22,7 @@ import java.util.regex.Pattern; import javax.sql.DataSource; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DatabaseFeeder.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DatabaseFeeder.java index ccc4dc92c54ddd6f94923a0019986db06ba46339..ae59f9e02ed997ea4d42a8e823d7c9a0c548ab68 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/DatabaseFeeder.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/DatabaseFeeder.java @@ -25,7 +25,7 @@ import java.util.List; import java.util.Map; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.utils.Column; import ch.systemsx.cisd.etlserver.utils.TabSeparatedValueTable; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/HeaderUtils.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/HeaderUtils.java index b888b1adee85b00c15ad70520f893ba77ca26b56..6ccf2abe19786c024af364f49f9b30abd78dd16a 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/HeaderUtils.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/HeaderUtils.java @@ -36,7 +36,7 @@ import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.etlserver.utils.Column; import ch.systemsx.cisd.etlserver.utils.TabSeparatedValueTable; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetPropertiesExtractor.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetPropertiesExtractor.java index 7054a746c362ad581641b3e4ee74185aba87e4c2..e4bf8e677c6b3b84a2a4257ef75c7edd064bbed0 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetPropertiesExtractor.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetPropertiesExtractor.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.generic.shared.dto.NewProperty; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetUploader.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetUploader.java index f76163e73da7eded2b82cb2e6baa3b0345a7ffbc..b8c9ae80589e9c67026d5377a043ae833d3acbe3 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetUploader.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/LcaMicDataSetUploader.java @@ -27,7 +27,7 @@ import org.apache.commons.io.IOUtils; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.Parameters; import ch.systemsx.cisd.etlserver.utils.Column; import ch.systemsx.cisd.etlserver.utils.TabSeparatedValueTable; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesAndTimePointDataSetHandler.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesAndTimePointDataSetHandler.java index 88a9c09b909282ad2eedddc5d08996f3078ce6d9..89ea60117970c56d5de4785692a3a5abe26424f0 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesAndTimePointDataSetHandler.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesAndTimePointDataSetHandler.java @@ -26,7 +26,7 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesPropertiesUpdateProcessingPlugin.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesPropertiesUpdateProcessingPlugin.java index 79b83c513645b9f9c875fda658213e523f8ccc35..44112772719d05ca841f80e55ff0932ca59259be 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesPropertiesUpdateProcessingPlugin.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/TimeSeriesPropertiesUpdateProcessingPlugin.java @@ -20,8 +20,8 @@ import java.io.File; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractDatastorePlugin; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; diff --git a/eu_basysbio/source/java/eu/basysbio/cisd/dss/TypeExtractor.java b/eu_basysbio/source/java/eu/basysbio/cisd/dss/TypeExtractor.java index 0d8e64bdd6c0aade8f4818c2c4f80b96f768eee4..0c4482f2b3ea0c4b3d07235234958ed86d6317e2 100644 --- a/eu_basysbio/source/java/eu/basysbio/cisd/dss/TypeExtractor.java +++ b/eu_basysbio/source/java/eu/basysbio/cisd/dss/TypeExtractor.java @@ -20,7 +20,7 @@ import java.io.File; import java.io.FilenameFilter; import java.util.Properties; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.ITypeExtractor; import ch.systemsx.cisd.etlserver.SimpleTypeExtractor; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataColumnHeaderValidatorTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataColumnHeaderValidatorTest.java index f4bc9afaaeee9cbb60079b9e62f5e789796e9867..6a7232518016cfe95918f5decf2854fafe23c840 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataColumnHeaderValidatorTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataColumnHeaderValidatorTest.java @@ -30,7 +30,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.etlserver.validation.Result; /** diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetHandlerTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetHandlerTest.java index aeafa1b02f74516a53275a2c546876b1e8cc41c5..21fe9476ac904aa3ad6ea18c336c115c4dd7b6bc 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetHandlerTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetHandlerTest.java @@ -35,7 +35,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.etlserver.utils.Column; import ch.systemsx.cisd.etlserver.utils.TableBuilder; diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetTypeTranslatorTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetTypeTranslatorTest.java index 3869fbf0236db6fbb302425e0dd40ef26153f78c..13ab1aba1c6c831d3071185d0a9bb70310d3afbb 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetTypeTranslatorTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/DataSetTypeTranslatorTest.java @@ -21,8 +21,8 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/LcaMicDataSetUploaderTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/LcaMicDataSetUploaderTest.java index 3c80625c821cdd4e6dac1d3d05dd1dcc8a914231..e9743b881d1e8141f50107679c8929ed252f2dc3 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/LcaMicDataSetUploaderTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/LcaMicDataSetUploaderTest.java @@ -33,7 +33,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesDataSetUploaderTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesDataSetUploaderTest.java index 5a76058020e720161aea801eea292a7c3b39cd7c..15ba0caa4c1fc6a000f48d605d8e09a86e9bccfc 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesDataSetUploaderTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesDataSetUploaderTest.java @@ -34,7 +34,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.utils.Column; import ch.systemsx.cisd.etlserver.utils.TableBuilder; import ch.systemsx.cisd.openbis.common.eodsql.MockDataSet; diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesHeaderUtilsTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesHeaderUtilsTest.java index 0c05a23762f13701dd0a26699eb08b11c44f950b..57e95cd26a8a7e8d49d688d70886d80fa1aa0184 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesHeaderUtilsTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TimeSeriesHeaderUtilsTest.java @@ -28,7 +28,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Test cases for {@link HeaderUtils}. diff --git a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TypeExtractorTest.java b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TypeExtractorTest.java index c546b47ebc6acac33b68e8a0eae42cd9464b2615..53dcca9569153a73b7b2cf833b78738e12fb36dc 100644 --- a/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TypeExtractorTest.java +++ b/eu_basysbio/sourceTest/java/eu/basysbio/cisd/dss/TypeExtractorTest.java @@ -24,7 +24,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * diff --git a/image_readers/source/java/ch/systemsx/cisd/imagereaders/bioformats/FlexHelper.java b/image_readers/source/java/ch/systemsx/cisd/imagereaders/bioformats/FlexHelper.java index a17e180fa85da447de72919fc74543f2f64c79d2..c03cc4d713adf03f7ba528edcb36f14cb6275d92 100644 --- a/image_readers/source/java/ch/systemsx/cisd/imagereaders/bioformats/FlexHelper.java +++ b/image_readers/source/java/ch/systemsx/cisd/imagereaders/bioformats/FlexHelper.java @@ -37,7 +37,7 @@ import org.w3c.dom.NodeList; import org.xml.sax.InputSource; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.geometry.SpatialPoint; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/api/gui/AbstractWebStartClientServingServlet.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/api/gui/AbstractWebStartClientServingServlet.java index 8414a131dfd3c2fcaba224c4624dcda630942acd..0a163a521a9299ca0ebeec6eb0f87a1293560876 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/api/gui/AbstractWebStartClientServingServlet.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/api/gui/AbstractWebStartClientServingServlet.java @@ -27,8 +27,8 @@ import javax.servlet.http.HttpServletResponse; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.string.Template; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/cli/DataSetLister.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/cli/DataSetLister.java index c971b0d74d63265bf072962edc1082b66ae70df0..932dd45f88fb1a8237ae24365c84303e0bb28090 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/cli/DataSetLister.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/cli/DataSetLister.java @@ -22,7 +22,7 @@ import java.util.List; import jline.ConsoleReader; import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/console/AdminConsole.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/console/AdminConsole.java index a75e0ab0aa29473c0d20cd6694f01ce34e08bd18..82622ba60f9d565dd4159cff0a7c2645e8cbed77 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/console/AdminConsole.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/console/AdminConsole.java @@ -26,7 +26,7 @@ import jline.ConsoleReader; import org.apache.commons.lang.time.DateUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.spring.HttpInvokerUtils; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractClientService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractClientService.java index c3247e60d536ca2c1f2d91678892ec3bb34be33a..63192a7792ff43393872cbc9f95d3955e25da590 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractClientService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractClientService.java @@ -32,7 +32,7 @@ import javax.servlet.http.HttpSession; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; @@ -565,7 +565,7 @@ public abstract class AbstractClientService implements IClientService, { final SessionContextDTO session = getServer().tryToAuthenticateAnonymously(); return tryToLogin(session); - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } catch (final IllegalStateException e) @@ -649,7 +649,7 @@ public abstract class AbstractClientService implements IClientService, } catch (InvalidSessionException e) { // ignored - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } @@ -666,7 +666,7 @@ public abstract class AbstractClientService implements IClientService, } catch (InvalidSessionException e) { // ignored - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } @@ -685,7 +685,7 @@ public abstract class AbstractClientService implements IClientService, } catch (InvalidSessionException e) { // ignored - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } @@ -703,7 +703,7 @@ public abstract class AbstractClientService implements IClientService, } catch (InvalidSessionException e) { // ignored - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractOriginalDataProviderWithoutHeaders.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractOriginalDataProviderWithoutHeaders.java index c14ab977f8f6f23b056ed60bc0396e307982dade..8c981c62380477a85c4c41b1ac6d1d6ffc1525dd 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractOriginalDataProviderWithoutHeaders.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractOriginalDataProviderWithoutHeaders.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.client.web.server; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.client.web.server.resultset.IOriginalDataProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TableModelColumnHeader; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractServlet.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractServlet.java index 7f4f3b02fa21dfb679288e10733e9f2efb882acb..01abcfc43e55229a3a14b5933dcee3cf49dea68d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractServlet.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AbstractServlet.java @@ -26,7 +26,7 @@ import javax.servlet.http.HttpSession; import org.springframework.web.servlet.ModelAndView; import org.springframework.web.servlet.mvc.AbstractController; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.SessionConstants; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AttachmentRegistrationHelper.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AttachmentRegistrationHelper.java index 47f481c203beacb952e70862f0ab3fcee87b23e2..d1d8a150dc85292c8e948ce70ffcfa888ee4bf2d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AttachmentRegistrationHelper.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/AttachmentRegistrationHelper.java @@ -9,7 +9,7 @@ import javax.servlet.http.HttpSession; import org.apache.commons.io.FileUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.common.spring.IUncheckedMultipartFile; import ch.systemsx.cisd.openbis.generic.client.web.server.translator.UserFailureExceptionTranslator; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/ClientServiceExceptionTranslatingAdvisor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/ClientServiceExceptionTranslatingAdvisor.java index 4e0dfaf8f9d22ead13bab4ad52e0d13c64d56f92..6fa85ff19acc398a0ada59d43ba9227d1ff8331c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/ClientServiceExceptionTranslatingAdvisor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/ClientServiceExceptionTranslatingAdvisor.java @@ -28,7 +28,7 @@ import ch.systemsx.cisd.openbis.generic.client.web.client.IClientService; import ch.systemsx.cisd.openbis.generic.client.web.server.translator.UserFailureExceptionTranslator; /** - * Translates server side {@link ch.systemsx.cisd.common.exception.UserFailureException} thrown by + * Translates server side {@link ch.systemsx.cisd.common.exceptions.UserFailureException} thrown by * all {@link IClientService} methods to client side * {@link ch.systemsx.cisd.openbis.generic.client.web.client.exception.UserFailureException}. * @@ -69,7 +69,7 @@ public class ClientServiceExceptionTranslatingAdvisor extends DefaultPointcutAdv try { return invocation.proceed(); - } catch (ch.systemsx.cisd.common.exception.UserFailureException ex) + } catch (ch.systemsx.cisd.common.exceptions.UserFailureException ex) { throw UserFailureExceptionTranslator.translate(ex); } diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/CommonClientService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/CommonClientService.java index a13d5709b09d8762ac45fdc9afe71ae6c5ef7eeb..f69bba1bb446f8a4a86ab38d77bd22eb7f1fa9e5 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/CommonClientService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/CommonClientService.java @@ -31,8 +31,8 @@ import javax.servlet.http.HttpSession; import org.apache.commons.io.FileUtils; -import ch.systemsx.cisd.common.exception.ExceptionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.io.DelegatedReader; import ch.systemsx.cisd.common.parser.AbstractParserObjectFactory; @@ -306,7 +306,7 @@ public final class CommonClientService extends AbstractClientService implements // Not directly needed but this refreshes the session. getSessionToken(); getResultSetManager().removeResultSet(resultSetKey); - } catch (ch.systemsx.cisd.common.exception.InvalidSessionException e) + } catch (ch.systemsx.cisd.common.exceptions.InvalidSessionException e) { return; // there is no session, so nothing has to be removed from it } catch (InvalidSessionException e) @@ -897,7 +897,7 @@ public final class CommonClientService extends AbstractClientService implements .asList(ch.systemsx.cisd.openbis.generic.shared.dto.SearchableEntity .values())); return searchableEntities; - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServlet.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServlet.java index 622e4fd387ccc9c4ed4ab6df7685dc2a4d6d4970..e47a369e78b85d1314da8e58532e939dc08cc9de 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServlet.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServlet.java @@ -38,7 +38,7 @@ import org.springframework.web.servlet.mvc.AbstractCommandController; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/DataProviderAdapter.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/DataProviderAdapter.java index 0c790577d2ca91ce4364b57894433227d4bdae37..459058061bd819743f9b69b5d02958ef41e31870 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/DataProviderAdapter.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/DataProviderAdapter.java @@ -20,7 +20,7 @@ import java.io.Serializable; import java.util.Collections; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TableModelColumnHeader; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TableModelRowWithObject; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TypedTableModel; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IOriginalDataProvider.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IOriginalDataProvider.java index e12ebdd2909ea391db269fef9afedad52ec9ef30..c12bbcd1eea69fead9cce391dc62cee64717fe5c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IOriginalDataProvider.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IOriginalDataProvider.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.client.web.server.resultset; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TableModelColumnHeader; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IResultSetManager.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IResultSetManager.java index 3ecf3fd375e1b3b0cbbca74b169873fe84856290..f3e36314bb62ddc10613521a5721f3f893a0799c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IResultSetManager.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/IResultSetManager.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.client.web.server.resultset; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.IResultSetConfig; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/translator/UserFailureExceptionTranslator.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/translator/UserFailureExceptionTranslator.java index e6bce3c34265cca8c165632ce7d533c9bc5622b9..ae9e8566478c05d8be70b4a7a6092c3c70ae99ac 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/translator/UserFailureExceptionTranslator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/client/web/server/translator/UserFailureExceptionTranslator.java @@ -23,7 +23,7 @@ import ch.systemsx.cisd.common.reflection.ClassUtils; import ch.systemsx.cisd.openbis.generic.client.web.client.exception.UserFailureException; /** - * Translator of server side {@link ch.systemsx.cisd.common.exception.UserFailureException} into + * Translator of server side {@link ch.systemsx.cisd.common.exceptions.UserFailureException} into * GWT compatible {@link UserFailureException}. * * @author Franz-Josef Elmer @@ -44,24 +44,24 @@ public class UserFailureExceptionTranslator } /** - * Converts any {@link ch.systemsx.cisd.common.exception.UserFailureException} or subclass of + * Converts any {@link ch.systemsx.cisd.common.exceptions.UserFailureException} or subclass of * it to a <i>GWT</i> {@link UserFailureException} (or subclass of it if this one could be found * in the same package). */ public static UserFailureException translate( - ch.systemsx.cisd.common.exception.UserFailureException exception) + ch.systemsx.cisd.common.exceptions.UserFailureException exception) { return translate(exception, null); } /** - * Converts any {@link ch.systemsx.cisd.common.exception.UserFailureException} or subclass of + * Converts any {@link ch.systemsx.cisd.common.exceptions.UserFailureException} or subclass of * it to a <i>GWT</i> {@link UserFailureException} (or subclass of it if this one could be found * in the same package) using specified message as the main message and message in the original * exception as the detail message. */ public static UserFailureException translate( - ch.systemsx.cisd.common.exception.UserFailureException exception, + ch.systemsx.cisd.common.exceptions.UserFailureException exception, String simpleMessageOrNull) { final String className = diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractCommonServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractCommonServer.java index dbe87dcbebd1f0ce8d7db9a149f75edab079e10e..a926344e7cafcc51ebc45221ba403fcb412cc290 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractCommonServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractCommonServer.java @@ -24,7 +24,7 @@ import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.ISessionManager; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IPropertiesBatchManager; import ch.systemsx.cisd.openbis.generic.server.business.bo.ICommonBusinessObjectFactory; import ch.systemsx.cisd.openbis.generic.server.business.bo.IDataSetTable; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractServer.java index e69b0872b606719b8db6c0fa5cb4db918499eb87..bc8fccda775a27724a7cec9f70ac61325cd4d237 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/AbstractServer.java @@ -39,8 +39,8 @@ import org.springframework.transaction.annotation.Transactional; import ch.systemsx.cisd.authentication.IPrincipalProvider; import ch.systemsx.cisd.authentication.ISessionManager; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.common.mail.MailClientParameters; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/CommonServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/CommonServer.java index 1866d80d0072f4944b1eeb5246db1cd9a960d5b5..33e40a70a91755aa7a38b99cda53cecef77f38d8 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/CommonServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/CommonServer.java @@ -37,8 +37,8 @@ import org.springframework.dao.DataIntegrityViolationException; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java index 647911da04a07dda49227e56507c758b20997c74..27f85ef1728a474b0045aba933bb9ef37c323704 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java @@ -33,8 +33,8 @@ import ch.systemsx.cisd.authentication.DefaultSessionManager; import ch.systemsx.cisd.authentication.DummyAuthenticationService; import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.servlet.IRequestContextProvider; import ch.systemsx.cisd.common.servlet.RequestContextProviderAdapter; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceLogger.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceLogger.java index dfad8b9039060a65e973c337234a00942543fea3..238c3af13a46a7d6a229de7415aed70f61fcbe68 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceLogger.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceLogger.java @@ -24,7 +24,7 @@ import org.apache.log4j.Level; import ch.systemsx.cisd.authentication.ISessionManager; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerLogger; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/MaterialHelper.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/MaterialHelper.java index 9085e39ece6edc16a6ec492fcce5519368a586d8..2427c2b75978d5b3d789da61342af3d00b191f0b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/MaterialHelper.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/MaterialHelper.java @@ -27,7 +27,7 @@ import java.util.concurrent.atomic.AtomicInteger; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.batch.BatchOperationExecutor; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/OptimisticLockingRetryAdvisor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/OptimisticLockingRetryAdvisor.java index 5d4b096a9687c0ca79afbf3c67af063883f2c07b..02c546bc79008e6d430c5441272b71fb98975621 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/OptimisticLockingRetryAdvisor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/OptimisticLockingRetryAdvisor.java @@ -28,7 +28,7 @@ import org.springframework.core.Ordered; import org.springframework.dao.DeadlockLoserDataAccessException; import org.springframework.orm.hibernate3.HibernateOptimisticLockingFailureException; -import ch.systemsx.cisd.common.exception.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.shared.IServer; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ServerExceptionTranslatingAdvisor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ServerExceptionTranslatingAdvisor.java index 05a28eba83dc01cc90ebe3f5a63a313aff170e9b..2a9a6d438412ab89deea38172d2798845c433782 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ServerExceptionTranslatingAdvisor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ServerExceptionTranslatingAdvisor.java @@ -28,7 +28,7 @@ import org.springframework.dao.DataAccessException; import org.springframework.transaction.TransactionSystemException; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.IServer; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationChangingService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationChangingService.java index 819fbb1f6b7aedc80d034bdaaff78131002372bf..c0d257869c9e69e63dd2e6e094bb8a3705c5c807 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationChangingService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationChangingService.java @@ -24,7 +24,7 @@ import org.springframework.stereotype.Component; import org.springframework.transaction.annotation.Transactional; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.RolesAllowed; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationService.java index b9b25db82d90919aeb1ce8bfe0fa26f144ca6703..43da0d55710b8dbc75753491f6ea3cb5cfb0cbb0 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/api/v1/GeneralInformationService.java @@ -35,7 +35,7 @@ import org.springframework.stereotype.Component; import org.springframework.transaction.annotation.Transactional; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.ComponentNames; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AlwaysStatusOkAccessController.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AlwaysStatusOkAccessController.java index 210a62d3d2683cbcdb0b762f4f01bcdbcda5b3b0..3fff7cf228ee4f70a5c0991944ecf10b525af9e2 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AlwaysStatusOkAccessController.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AlwaysStatusOkAccessController.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.generic.server.authorization; import java.lang.reflect.Method; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.IAuthSession; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationAdvisor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationAdvisor.java index 1c06900a6ca1114fad8f0270c40f85feee848700..e83dec0a9d2e0fb85101a1d9257d238298cf7150 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationAdvisor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationAdvisor.java @@ -31,9 +31,9 @@ import org.springframework.aop.Pointcut; import org.springframework.aop.support.DefaultPointcutAdvisor; import org.springframework.aop.support.annotation.AnnotationMatchingPointcut; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.reflection.AnnotationUtils; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationServiceUtils.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationServiceUtils.java index d02dd377e45bd361d723274683d4565b956e2356..8623fe44a8e2f4acb5e83bae19edb6beaee36f72 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationServiceUtils.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/AuthorizationServiceUtils.java @@ -20,9 +20,9 @@ import java.util.ArrayList; import java.util.LinkedList; import java.util.List; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.DataSetCodePredicate; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.DelegatedPredicate; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.ExperimentIdentifierPredicate; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessController.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessController.java index 8514be270884e2ef253d99110cbfd340a0962869..7de02becf9eba9b1c25d08661253e4b3b93ba482 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessController.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessController.java @@ -31,9 +31,9 @@ import org.apache.commons.lang.time.StopWatch; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.reflection.MethodUtils; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/IAccessController.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/IAccessController.java index 1331c5a6b4dcd5481a2d06708717066da1de8e14..c80d6f60e8d2425f0d035863b8b7c3491801e60e 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/IAccessController.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/IAccessController.java @@ -18,9 +18,9 @@ package ch.systemsx.cisd.openbis.generic.server.authorization; import java.lang.reflect.Method; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.IAuthSession; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutor.java index 9835a6a9e7a2d79af6cb1847fc9a0eab77665418..2acf7be1c312d04f058e41773af6cb8cf8805343 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutor.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.ArrayPredicate; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.CollectionPredicate; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractExpressionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractExpressionPredicate.java index e09a5f535bb8844910f8126be93290ccb42f2e45..f1d3a8f44e9ac15c0be38e6192665e3ac13a1e77 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractExpressionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractExpressionPredicate.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractPredicate.java index f1e8b815346a06495b9edd8cf6059f6fcbba3932..e46ec4db3d089080f1d23c180ab5f47f0d66f69b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractPredicate.java @@ -20,8 +20,8 @@ import java.util.List; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleCode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleLevel; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractSpacePredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractSpacePredicate.java index a2a34fbee7470a6f6744f650c24b83bf7c261407..17cab3ce6ef3fafd44595cb4f6ae52d2da9cfb74 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractSpacePredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractSpacePredicate.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleLevel; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicate.java index e2eb5d6a4923ceea837e888a9dd92d8f5a8a0100..0fadc9c51eef5c50a1090d0f5151d59dcd5a794c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicate.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.SpaceOwnerKind; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicate.java index 5a183faea0605f97c3282f4714e2f9cab5f943e1..859ad685800628410e9ad7fc06f34846d67e737f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.SpaceOwnerKind; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicate.java index bb53edbc322094c57db2d10e7f3c7dabb8437062..e4542f95e03496440cafd9482af0a1b4c5cdd464 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicate.java @@ -20,8 +20,8 @@ import java.util.List; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AtomicOperationsPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AtomicOperationsPredicate.java index 539a44f8e9c6ab24e6170a273f72b4d92a4e5a40..aa9ad0261af7fbd7a8c6c9b74a58453207230342 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AtomicOperationsPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AtomicOperationsPredicate.java @@ -20,7 +20,7 @@ import java.util.List; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewExperiment; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicate.java index 9d3255749ddeff40b15174c4b0e669397302296b..27f57960c4e808541a58ac8525b1f880eb6d16fa 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicate.java @@ -21,8 +21,8 @@ import java.util.List; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodeCollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodeCollectionPredicate.java index 3adeadf189ee352542189f8129497a7a9368f3e1..9a337e1502bb44335bf06b7d3740fa70b5090ca5 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodeCollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodeCollectionPredicate.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; import ch.systemsx.cisd.openbis.generic.shared.dto.DataSetAccessPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicate.java index 85526b7f69905d54f5cef509857c68d2234c7792..8d089bf4697b2541c1b437f1b465a902d596717f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.DataSetAccessPE; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicate.java index 31e216a1aa9da321038299393d05475712607966..30e12af3dbf0ff8ec90032259604d6ab2dca6fde 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicate.java @@ -21,7 +21,7 @@ import java.util.List; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesPredicate.java index 617dca2977ebe636c2201820ad924f9874041ab2..52832ad7cb5b159be5c7ad3176209d10c2fbceaa 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractTechIdPredicate.DataSetTechIdPredicate; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicate.java index 141fc4010bef9180d97b1700fc1bba888815dafa..248f35c636a9fc113545e25934c852ceacfceede 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleLevel; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedNullableAbstractPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedNullableAbstractPredicate.java index b8e5bcf2f4875adfa43ed90ffdb94c181235b6ae..45440e112d294dbe28ad99735e19d76baf80d6e1 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedNullableAbstractPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedNullableAbstractPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedPredicate.java index 2810564f6f9b1e2e62c7a5dba494417dd0b5b958..85a5e35ffa2fd4bf835186a6e37969efaa521fee 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DelegatedPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DeletionTechIdCollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DeletionTechIdCollectionPredicate.java index 095857940f4ea8542485276aaa46cae497d75f5c..70cb3a536b3148fe6093d28f2f68264df71a3045 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DeletionTechIdCollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DeletionTechIdCollectionPredicate.java @@ -20,7 +20,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentListPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentListPredicate.java index e4793eafc7e60fed28cb190f24f17031926d33ef..080a7aa5d9cf0d1215f66f43404ddcf6e0e785a6 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentListPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentListPredicate.java @@ -27,8 +27,8 @@ import net.lemnik.eodsql.BaseQuery; import net.lemnik.eodsql.QueryTool; import net.lemnik.eodsql.Select; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.LongArrayMapper; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentUpdatesPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentUpdatesPredicate.java index 9e211b1d3e1b732d9de4928b47af90fb1a7b5c33..2545969c4859f94b2f7d8b996a56941f54840549 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentUpdatesPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ExperimentUpdatesPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractTechIdPredicate.ExperimentTechIdPredicate; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/IPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/IPredicate.java index 29cd9751d8f4552ae927e183088581b24aae20fa..62851ab331f53bc439ae4742bd4d5c296445fd4f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/IPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/IPredicate.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.IPredicateFactory; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicate.java index 98ad6f1d1901cacd71d7f03735b7a4ded03449ad..650c7b80f049bd7a7c056941d991d4dcbf8c142f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicate.java @@ -20,7 +20,7 @@ import java.util.ArrayList; import java.util.Collection; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractTechIdPredicate.ExperimentTechIdPredicate; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSamplesByPropertyPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSamplesByPropertyPredicate.java index afb75da2f27200fc2725f78c2df553625c5421f8..fab5175ce71f04541d3fa9cd484674fafc7405a3 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSamplesByPropertyPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSamplesByPropertyPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.ListSamplesByPropertyCriteria; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/MetaprojectTechIdPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/MetaprojectTechIdPredicate.java index 00092a25d1ae909572980a74da3994b1eff4ef48..e768798c4964f5917cc4b36bd2b090a516c1aec5 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/MetaprojectTechIdPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/MetaprojectTechIdPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewDataSetsWithTypePredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewDataSetsWithTypePredicate.java index 11ee4fa3b04a7da8f79ff839e81adebbcf9a70dc..9dd927ac5c784b9122a9a89b12540583363e3c49 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewDataSetsWithTypePredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewDataSetsWithTypePredicate.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExperimentsWithTypePredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExperimentsWithTypePredicate.java index c8b985426591345acc70a763de86ccbbf27972a8..e636a39be7d1f959138ceab8ff71e699f69e2ab4 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExperimentsWithTypePredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExperimentsWithTypePredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewBasicExperiment; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExternalDataPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExternalDataPredicate.java index 3e077e8a1fa604c7fc0691dc960d5c7f3b248f32..20a4598e7d5a4f476f6b092494fdf5b983e46e7a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExternalDataPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewExternalDataPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.NewExternalData; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicate.java index 26d57263b44a83850394bb7e67ed4936702c7f7c..3467ef9b55b7885635eb41a2fd8dafab38e7db5c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/PersistentEntityPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/PersistentEntityPredicate.java index 3eb90f69876a97f9d7c04f6b24a4c1c78695009f..b6cdbc22c7d0a97b27cca3e5d9285da945fdd5fd 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/PersistentEntityPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/PersistentEntityPredicate.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleLevel; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectUpdatesPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectUpdatesPredicate.java index 6bc98ac03fcfb45a5d6b7a68d0e64d7e538a00ed..87ecf8cd97b23e26a5e131c61631d39d5f88e791 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectUpdatesPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectUpdatesPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractTechIdPredicate.ProjectTechIdPredicate; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/RevertDeletionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/RevertDeletionPredicate.java index 2bcf15feb5bb835b0f04ff660c64d43dbdb7d30c..dff24f0ab55632e34fa6d7c624fc0ac2dfa31cb9 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/RevertDeletionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/RevertDeletionPredicate.java @@ -20,7 +20,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleListPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleListPredicate.java index f3f1ef5066f27013c1a0e29472e59a6e9e777b84..181e93efef20483a8c3ba8e634bd9ad790b8c1e6 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleListPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleListPredicate.java @@ -27,8 +27,8 @@ import net.lemnik.eodsql.BaseQuery; import net.lemnik.eodsql.QueryTool; import net.lemnik.eodsql.Select; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierCollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierCollectionPredicate.java index 5ad28a0505b3516d24a90348a68712fbe8435487..44c12f3eb2c15e0dfa5aa6ce30e0cb120ce941cb 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierCollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierCollectionPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicate.java index ccc5c508f477914e56b4c57d0f4560c9b2becc69..f170ba2085d1a3d3d54140fe35eb7b52ccef3099 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SamplePermIdPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SamplePermIdPredicate.java index b0393f78d4b650bdcee3bb68a4b734e67b11f455..93bf3ec20f7a9d942340a478ac7cecd91fd88394 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SamplePermIdPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SamplePermIdPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PermId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleTechIdPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleTechIdPredicate.java index 73033b25007443b5b9442231c25cb2edd94d1e68..d961fb398411a734b3395117c2a14a8826b5bd53 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleTechIdPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleTechIdPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicate.java index 3e70d7c5e62a491b58d46f0390cbd13086052b23..3c51be158d2f7fc5c97819a86cd154077b050103 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicate.java @@ -21,7 +21,7 @@ import java.util.List; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesPredicate.java index 0e7c5581696cbd2db966db2e0ee67dc1af5873ca..c069a3cccc1f01944db0ab40cc8bd5c209ef6459 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicate.java index 55296342907915cd539b47216ce58749ea0603a8..c5a09f407c5ab67baf9a86b3a14b982cecf046e4 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/UpdatedExperimentsWithTypePredicate.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/UpdatedExperimentsWithTypePredicate.java index 3fd4c0ed24fcb1aa51b3a3b2b4917ed46adb7891..23179c8a0a96f75624ce5a08537259f598cc3d60 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/UpdatedExperimentsWithTypePredicate.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/UpdatedExperimentsWithTypePredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewBasicExperiment; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManager.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManager.java index b3af8e28d354154bab177d7f4e2c442cb8ed7a9a..84b58559aae66aec72dd6aa6ca44e1cd5e573ee9 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManager.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManager.java @@ -25,7 +25,7 @@ import java.util.Set; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/RelationshipService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/RelationshipService.java index 4ce46b299834cbe05e8f86a03b4f456612ce4844..87663929e6289ed37a746dd7e01b0d99b05f8e3d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/RelationshipService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/RelationshipService.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business; import javax.annotation.Resource; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.RelationshipUtils; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.DAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractBusinessObject.java index cc0446ca78aeeccea82607c16fb6c3e8bddbfb85..7cde6fc6fe9424b9c21b6de5324c8a78c1e879a7 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractBusinessObject.java @@ -24,7 +24,7 @@ import java.util.Set; import org.hibernate.SessionFactory; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.EntityPropertiesConverter; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAttachmentDAO; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAuthorizationGroupDAO; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractDataSetBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractDataSetBusinessObject.java index 8201674cdb45403b57f9d6bced50916ff9dfd24c..0deeb8aec3cb37687e026b7b98d6300be8fa7c3d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractDataSetBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractDataSetBusinessObject.java @@ -24,7 +24,7 @@ import java.util.List; import java.util.Set; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.IServiceConversationClientManagerLocal; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractMaterialBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractMaterialBusinessObject.java index 75baf4a3522b70d65b40e110d3f6caf174163783..1563c2df65a1e4d41786df386bec6748378e1764 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractMaterialBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractMaterialBusinessObject.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IEntityPropertiesConverter; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleBusinessObject.java index c8ea4f2a6b741dfe68c13ed4cac78fdcdbe082ad..b771e53ab016c4dce7080062ae97daa62a064ed7 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleBusinessObject.java @@ -26,7 +26,7 @@ import java.util.Map; import java.util.Map.Entry; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IEntityOperationChecker; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleOwner; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleIdentifierBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleIdentifierBusinessObject.java index 72037d71688a9d5b2cf384799bf81328f134bae0..45648910e6267d798fcdc7fa2b4c06940587ffeb 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleIdentifierBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AbstractSampleIdentifierBusinessObject.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.HashMap; import java.util.Map; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleOwner; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleOwnerFinder; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AttachmentBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AttachmentBO.java index 0ba4251b06f7b66e9440f3328ab7098c08b329ca..645d10304f8c0a0651ebcb25ea9fa48934172db5 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AttachmentBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AttachmentBO.java @@ -21,7 +21,7 @@ import java.util.List; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Attachment; import ch.systemsx.cisd.openbis.generic.shared.dto.AttachmentHolderPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBO.java index 7e08bf43cace88140732e1256e4f3bc9748fa389..9a75cda25442509930eec8ef8ccf513c688016c2 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBO.java @@ -24,7 +24,7 @@ import org.springframework.dao.DataAccessException; import org.springframework.dao.DataRetrievalFailureException; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.AuthorizationGroupUpdates; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTable.java index f62cbb2b9458c218670518c6babd5cb609035ff4..06e633a22c877bd120bcbbfd05bf98b129f0bf62 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTable.java @@ -22,7 +22,7 @@ import java.util.List; import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataAccessExceptionTranslator.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataAccessExceptionTranslator.java index c4de5f53448966581ef1245377c0dcdcc71a6ae9..035eff2b4e8a1de2c1ad97c22ea9eaa602911e8a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataAccessExceptionTranslator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataAccessExceptionTranslator.java @@ -22,7 +22,7 @@ import org.apache.commons.lang.StringUtils; import org.springframework.dao.DataAccessException; import ch.systemsx.cisd.common.db.SQLStateUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.properties.EntityKind; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBO.java index c8733a2b59125b8fcd96fd44ae0f4e3d553a0fc2..ba5dc5444cc9f0a746fbc53be3241ef021a22b28 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBO.java @@ -27,7 +27,7 @@ import java.util.Set; import org.springframework.dao.DataAccessException; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.IServiceConversationClientManagerLocal; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.RelationshipUtils; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTable.java index d66d4ff6e5a12809caee5fcb1f115dfe473f727a..72f70f5a513f625c73d3681ec939098675385cb3 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTable.java @@ -38,9 +38,9 @@ import org.springframework.dao.DataIntegrityViolationException; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.business.IDataStoreServiceFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DeletedDataSetTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DeletedDataSetTable.java index 3c2d97a3a01fcdb0287e302e7d6cf0bc38977584..d1c891085a44cd823666f603cc7fd4b3c865a23a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DeletedDataSetTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DeletedDataSetTable.java @@ -28,7 +28,7 @@ import org.apache.commons.lang.StringUtils; import org.springframework.dao.DataAccessException; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IDataStoreServiceFactory; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.IServiceConversationClientManagerLocal; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBO.java index 12fc9050ff6f05f2e5bcb53ce5de1e87dd3f9162..4f63068c47c2e4f7f72d26498570bd29233fa3f4 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBO.java @@ -22,7 +22,7 @@ import java.util.regex.PatternSyntaxException; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypePropertyTypeBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypePropertyTypeBO.java index fe9816715322efea88d11898bf0bd9b7983c1b4e..991629539bed5f1129022295159202023c219513 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypePropertyTypeBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypePropertyTypeBO.java @@ -23,7 +23,7 @@ import org.apache.log4j.Logger; import org.springframework.dao.DataAccessException; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.EntityPropertiesConverter; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBO.java index 9ceda6cdc94ceea536b38da6c61983b3332c965d..d81a42797b70f92ffc0a7b8e73f24c51e4511092 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBO.java @@ -28,7 +28,7 @@ import org.springframework.dao.DataAccessException; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAttachmentDAO; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentTable.java index 2a9a6396d541e3ec25cbf33e61085d0eda82db6e..f1aef1ef72eda8fc380b1692517f4d72a484e42b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentTable.java @@ -27,7 +27,7 @@ import java.util.Set; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IEntityPropertiesConverter; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomColumnBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomColumnBO.java index e45bff0488e1bac1a29202037fd60b3fc9ca796f..57e6a93ac04c663bdf79c7e81e171e6d4407ce75 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomColumnBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomColumnBO.java @@ -22,7 +22,7 @@ import java.util.Set; import org.springframework.dao.DataAccessException; import org.springframework.dao.DataRetrievalFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.ExpressionUtil; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomFilterBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomFilterBO.java index 1d9d4f6e3e571dab1fbfcf2de9927b0033c0471d..a14dee35612264ed42632d1091f0453ab51b9b44 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomFilterBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/GridCustomFilterBO.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import org.springframework.dao.DataAccessException; import org.springframework.dao.DataRetrievalFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IExpressionUpdates; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAttachmentBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAttachmentBO.java index 3262e9b7b1a9d8eb325d9c8736952918b42ddc10..bd076e0d6248c2c3025d359261fe65a5bd27c176 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAttachmentBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAttachmentBO.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Attachment; import ch.systemsx.cisd.openbis.generic.shared.dto.AttachmentHolderPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAuthorizationGroupBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAuthorizationGroupBO.java index e35186f07ff2027eae5961a3ed69b40e8db1bcd5..1a857e8b31927d36f20bf432a95f5d1e1e5f4019 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAuthorizationGroupBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IAuthorizationGroupBO.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.AuthorizationGroupUpdates; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewAuthorizationGroup; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IBusinessObject.java index dd047d9433e5dfe989156b2badd6e6944f10dec8..4f891dd32eabfe34a1eb0e16d71d2948882b2f53 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IBusinessObject.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Common method(s) all Business Objects and Tables have to implement. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IDataBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IDataBO.java index f943a0c43215bc232031f9d9ba569367fdd9738a..7d1469156c6a58df555d249a898c729c85ebe1fd 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IDataBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IDataBO.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.IDataSetId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetArchivingStatus; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.SourceType; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IEntityBusinessObject.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IEntityBusinessObject.java index 13578009e331e08e3e862a3790e3ca0598a51401..0b603a5eacbca7d7b20a4af56d395335b32b1442 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IEntityBusinessObject.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IEntityBusinessObject.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentBO.java index 463903ca873f1ae1ed281ef8534a1bcf51013ea0..39b6824b04caa156a850ab9880e268181fad01dd 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentBO.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment.IExperimentId; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewExperiment; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentTable.java index 19b5d1c7e1058c351c24f92461d36aab83865249..da93f0993481e70fc2aaf4fe19f046e4eee42826 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IExperimentTable.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.Collection; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewBasicExperiment; import ch.systemsx.cisd.openbis.generic.shared.dto.ExperimentBatchUpdatesDTO; import ch.systemsx.cisd.openbis.generic.shared.dto.ExperimentPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IGridCustomFilterOrColumnBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IGridCustomFilterOrColumnBO.java index 224687f44190e6bc7de37426542491f9c581e488..e88c28b9a5c66bb0cc70af78dcb753a1db4af38f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IGridCustomFilterOrColumnBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IGridCustomFilterOrColumnBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IExpressionUpdates; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewColumnOrFilter; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialBO.java index 2045e61b55bcf609f293972ab56e4d1f28c5d7e7..817ebdb408e0ce4ea64f984e4ef886bd2020b82f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.IMaterialId; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.MaterialIdentifier; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialTable.java index f228062225f7efe2ac5000f6789472046458c376..66711432215ebafc51e16f1658288d92cedc249b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMaterialTable.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewMaterial; import ch.systemsx.cisd.openbis.generic.shared.dto.MaterialPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMetaprojectBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMetaprojectBO.java index e84f7172a6b7b2cddee08b45a91320e443005549..a02471d5a4c849ed245ea6c086eee6d59ddf7506 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMetaprojectBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IMetaprojectBO.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.IDataSetId; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment.IExperimentId; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.IMaterialId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IProjectBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IProjectBO.java index de63a2473b136ee260ed9a5d697051eafae5fdef..db6d161975ef125e9a436f4cf099e4e9f0995d91 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IProjectBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IProjectBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.dto.AttachmentPE; import ch.systemsx.cisd.openbis.generic.shared.dto.ProjectPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IPropertyTypeBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IPropertyTypeBO.java index 69851f032071b95170d131b4993db1608c2a319c..70459793e518d55ba4078f10da3957a9bf3ff9aa 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IPropertyTypeBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IPropertyTypeBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IPropertyTypeUpdates; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.PropertyType; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleBO.java index ebeca546650d6fe93ed01ab696e90d45b1996759..97619a1c2032e391ad08f9bd6e6f90e01dd3c97d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.ISampleId; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleTable.java index 0baab1c2678768fcff196bb0d576f0c9f5cca036..3f429e0d8b7596c10ec34f68950dc9b129c53b96 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISampleTable.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.dto.ListSamplesByPropertyCriteria; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IScriptBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IScriptBO.java index 2d1b315f340742ded9cbe6c9205ec8f774400474..0f577a07d3360963d60d49c4c9424bf664691004 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IScriptBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IScriptBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IScriptUpdates; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Script; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISpaceBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISpaceBO.java index 4e2b0afb3c16025d15e5035a37339a601b9b9ae0..e7c3957fe0da5cfa082a7d8a217fa0684d14199d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISpaceBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ISpaceBO.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ISpaceUpdates; import ch.systemsx.cisd.openbis.generic.shared.dto.SpacePE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IVocabularyBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IVocabularyBO.java index 48310ae422bff754f8b759a080c4b7998717117d..84c990a983c1bb3538eee598ffa788672b6b407c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IVocabularyBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/IVocabularyBO.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IVocabularyUpdates; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewVocabulary; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialBO.java index 7adcbbe2053a9a3546fcad556154e1a59a408835..72ebf0509b31d19ddd416478d983feb31e8bbb68 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialBO.java @@ -22,7 +22,7 @@ import java.util.Set; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.IMaterialId; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialTable.java index 63137e23b76fe0a6b5752f1de1550f582849d3d5..ca95b4098f8ee22bc04ae5177fe68940576fc7b4 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MaterialTable.java @@ -27,7 +27,7 @@ import org.springframework.dao.DataAccessException; import org.springframework.dao.DataIntegrityViolationException; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IEntityPropertiesConverter; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MetaprojectBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MetaprojectBO.java index bfec70986677927eb0351289887fbe7b8bfac2a2..ac47f87682d22f8d80f143e4133cf4c6fc32e934 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MetaprojectBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/MetaprojectBO.java @@ -25,7 +25,7 @@ import java.util.Map; import org.springframework.dao.DataAccessException; import org.springframework.orm.ObjectRetrievalFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.search.IFullTextIndexUpdateScheduler; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.search.IndexUpdateOperation; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBO.java index aa26f27ec146cc9fc0ab05c566bfe39f307f391a..7882235d9ceaafafe4b1fa2a67101e9d42c8f4a9 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBO.java @@ -25,7 +25,7 @@ import org.springframework.dao.DataAccessException; import org.springframework.orm.ObjectRetrievalFailureException; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAttachmentDAO; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBO.java index d3aa802fadfd57410d3e00dfc09914b6c3a93913..2637614715667ae8491b13bee418bba75a343f3c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBO.java @@ -25,7 +25,7 @@ import org.springframework.dao.DataIntegrityViolationException; import org.springframework.dao.DataRetrievalFailureException; import org.w3c.dom.Document; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.common.xml.XMLInfraStructure; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/RoleAssignmentTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/RoleAssignmentTable.java index 7b0fcfa33c6e05358b13f466227bf98d2fb5772c..084185940441892344d3b13676fa52bd2befef8e 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/RoleAssignmentTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/RoleAssignmentTable.java @@ -22,7 +22,7 @@ import java.util.List; import org.springframework.dao.DataIntegrityViolationException; import ch.systemsx.cisd.common.collection.TableMap; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.util.KeyExtractorFactory; import ch.systemsx.cisd.openbis.generic.server.util.SpaceIdentifierHelper; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBO.java index cee8ba7a1782ca2077ade23593c933feeb80b4ba..f72bb76d4cc70d8f448ed51e7091b88b4321bd1e 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBO.java @@ -24,7 +24,7 @@ import java.util.Set; import org.springframework.dao.DataAccessException; import org.springframework.dao.DataIntegrityViolationException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IEntityOperationChecker; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleUtils; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRules.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRules.java index 58dd8367c56043c3d015f5cedda04a2680243108..1f3db38510e8cb534738b822ef6c5354749ae94f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRules.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRules.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.IdentifierHelper; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SampleIdentifier; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTable.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTable.java index edfae35ebb15f10dfd6928a5a69459fc9bd45fd2..54fdd78c24924585dcaa0a68f26c30cf42c0faec 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTable.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTable.java @@ -27,8 +27,8 @@ import java.util.Set; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IEntityOperationChecker; import ch.systemsx.cisd.openbis.generic.server.business.IRelationshipService; import ch.systemsx.cisd.openbis.generic.server.business.bo.util.SampleOwner; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBO.java index 98e47db040bdbda3bbc772f9c861218089ddeea4..722aa9a5389e6dc413ae0047b9e9bfd171bd8f3f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBO.java @@ -20,7 +20,7 @@ import org.springframework.dao.DataAccessException; import org.springframework.dao.DataRetrievalFailureException; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.DynamicPropertyCalculator; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SpaceBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SpaceBO.java index 4ffc1f8d7a35fbfb6d96b52c9f6b35493b7909e8..0f25467840c249f43989d633d6dd87c2473b2d11 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SpaceBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SpaceBO.java @@ -21,7 +21,7 @@ import java.util.Collections; import org.springframework.dao.DataAccessException; import org.springframework.dao.DataRetrievalFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.util.SpaceIdentifierHelper; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBO.java index 0f44e76efd5cf74777c29f49e8d3c62d54c558d6..533819a1a4b97ff2613c6ec97908c00d842933ef 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBO.java @@ -27,7 +27,7 @@ import java.util.TreeMap; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.batch.BatchOperationExecutor; import ch.systemsx.cisd.openbis.generic.server.batch.IBatchOperation; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBO.java index 57d4a0d6df2b8133107fa0a58ec2ac9025c418ef..dab7c4157cce12b10a04a9d9d75999e3983e802a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBO.java @@ -34,7 +34,7 @@ import org.springframework.dao.DataRetrievalFailureException; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.collection.IKeyExtractor; import ch.systemsx.cisd.common.collection.TableMap; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IEntityPropertyTypeDAO; import ch.systemsx.cisd.openbis.generic.server.dataaccess.util.KeyExtractorFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyTermBO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyTermBO.java index 5196ddf79c99ddd71122c774dedec9c42f8a1d92..71cf4e2fee6d2e6983facaf96ac1c82312ab2c5c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyTermBO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyTermBO.java @@ -20,7 +20,7 @@ import java.util.List; import org.springframework.dao.DataRetrievalFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IVocabularyTermUpdates; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/AbstractBatchIterator.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/AbstractBatchIterator.java index 9c705d3603ec4311967fd3ceb1f7ec8e0cfd9e93..0bbcb4a45f00788a92a9011c2cd65c7184e7912c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/AbstractBatchIterator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/AbstractBatchIterator.java @@ -21,7 +21,7 @@ import it.unimi.dsi.fastutil.longs.LongSet; import java.util.Iterator; -import ch.systemsx.cisd.common.exception.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; /** * Allows to convert an memory-inefficient iterator into a one which has lower memory consumption. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/DatabaseContextUtils.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/DatabaseContextUtils.java index bc00a34362ad185ac890f1ee24537dbe0376485b..81a5242873dabe22507103af6904656a29691c79 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/DatabaseContextUtils.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/DatabaseContextUtils.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo.common; import java.sql.Connection; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.dbmigration.DatabaseConfigurationContext; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAuthorizationDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/entity/SecondaryEntityDAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/entity/SecondaryEntityDAO.java index 3b0623e7059da45b6be3d1194e94e22f8217163c..ced273d33b757b568909b5e0b03e3931e855ec65 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/entity/SecondaryEntityDAO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/common/entity/SecondaryEntityDAO.java @@ -29,7 +29,7 @@ import org.springframework.dao.EmptyResultDataAccessException; import ch.rinn.restrictions.Friend; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.DatabaseContextUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.PersistencyResources; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/datasetlister/DatasetLister.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/datasetlister/DatasetLister.java index e5c161f498160e50fbc9f3967ee8c78040ae47b0..a75f55691ae25adb1c73a8033288907a751d474f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/datasetlister/DatasetLister.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/datasetlister/DatasetLister.java @@ -40,7 +40,7 @@ import org.apache.commons.lang.time.DateUtils; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.common.collection.IKeyExtractor; import ch.systemsx.cisd.common.collection.TableMap; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.CodeRecord; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.EntityPropertiesEnricher; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionDisallowedTypesException.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionDisallowedTypesException.java index 1caa338abd515c50d9cff753d2ccf29a42c92405..ae7763ba357c425f0cfc3f8fa3c1977cde747b29 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionDisallowedTypesException.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionDisallowedTypesException.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo.exception; import java.util.List; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author pkupczyk diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionUnknownLocationsException.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionUnknownLocationsException.java index fc663dd6abf390c861939c936aa21a8680070e67..a961df6fe7a67d1295c22b75748afe7cb09e21e0 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionUnknownLocationsException.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/exception/DataSetDeletionUnknownLocationsException.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo.exception; import java.util.List; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author pkupczyk diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetLister.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetLister.java index 5c54030338a62c03d837f1696097bbf124a70422..650365334d2e8c3375a07afce628763eb73706e2 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetLister.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetLister.java @@ -27,7 +27,7 @@ import net.lemnik.eodsql.QueryTool; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.DatabaseContextUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAuthorizationDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/managed_property/EntityInformationProvider.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/managed_property/EntityInformationProvider.java index e2e0c48d5e9e971b2c9a046978054b187f92b2f0..46bcbff7cb77b6d690d3513d1a9e8bb7ca6fcd98 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/managed_property/EntityInformationProvider.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/managed_property/EntityInformationProvider.java @@ -22,7 +22,7 @@ import java.util.List; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.ResourceNames; import ch.systemsx.cisd.openbis.generic.shared.basic.IIdentifierHolder; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleOwnerFinder.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleOwnerFinder.java index ac49a7b0a03d13b9853068e2a15c2227feaf0b7e..3e001925ee0d7045400310b96a661b555ac17e79 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleOwnerFinder.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleOwnerFinder.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo.util; -import ch.systemsx.cisd.common.exception.InternalErr; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.InternalErr; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAuthorizationDAOFactory; import ch.systemsx.cisd.openbis.generic.server.util.SpaceIdentifierHelper; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleUtils.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleUtils.java index 71bc5b9c964bddccddc7005cc4f450dce6809f8b..402ef5e185e802dd5eb5aad5da0cde7380954cfc 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleUtils.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/bo/util/SampleUtils.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo.util; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDataDAO; import ch.systemsx.cisd.openbis.generic.shared.dto.ExperimentPE; import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporter.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporter.java index 772d3e7e86efd73da6a2f7883367c96ceeecd29e..a63f0d063ca9c752ef1996c5be0292b7841a9161 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporter.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporter.java @@ -32,7 +32,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProvider.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProvider.java index 1c02929bc8a7b883915b694f94d7e1e6722425b1..a23dfc458ca7a68292051b848f814ee79d319ec1 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProvider.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProvider.java @@ -25,8 +25,8 @@ import javax.sql.DataSource; import org.springframework.beans.factory.InitializingBean; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverter.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverter.java index 8c5f193c5d31064e09d6420f1fed68d900e388b6..d71bd1e1850e76137f5231733de7f9499e4fb5fa 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverter.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverter.java @@ -36,7 +36,7 @@ import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.collection.IKeyExtractor; import ch.systemsx.cisd.common.collection.TableMap; import ch.systemsx.cisd.common.collection.TableMap.UniqueKeyViolationStrategy; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.util.KeyExtractorFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.BasicConstant; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IDataSourceProvider.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IDataSourceProvider.java index cb082ffdfe2c04d7ef7ef77a89eabea506345eaa..1029fe68deed5a2041bcf209cf11f8faa74c6289 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IDataSourceProvider.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IDataSourceProvider.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess; import javax.sql.DataSource; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Interface for providing a {@link DataSource} for a technology specific database based on data set diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IPropertyValueValidator.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IPropertyValueValidator.java index 7c060f8e0cc75a92a5864bbe643a49431a7ef394..d1161f6c26806d59848102b04ea85861443db214 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IPropertyValueValidator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/IPropertyValueValidator.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.PropertyTypePE; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/PropertyValidator.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/PropertyValidator.java index f263e6351917dceb37032fa9a8663e4c3d8dcc0b..53abba64b28d62797e43a3b2d61531568a3d446a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/PropertyValidator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/PropertyValidator.java @@ -24,7 +24,7 @@ import org.w3c.dom.Document; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.collection.IToStringConverter; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.BasicConstant; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.MaterialIdentifier; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AbstractDAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AbstractDAO.java index 61e1e02be8ed1ff43c35cc142d8602d9ea17debf..a35d259ab34a3bdf6a9d6f99473df1dd2ef5293a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AbstractDAO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AbstractDAO.java @@ -53,7 +53,7 @@ import org.springframework.orm.hibernate3.SessionFactoryUtils; import org.springframework.orm.hibernate3.support.HibernateDaoSupport; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.DynamicPropertyEvaluationOperation; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDynamicPropertyEvaluationScheduler; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AuthorizationDAOFactory.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AuthorizationDAOFactory.java index 61a15352118a98aa1273c58d7239e32972b2bb5b..c625d1486c84250c4deb761024612916a25531a0 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AuthorizationDAOFactory.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/AuthorizationDAOFactory.java @@ -24,8 +24,8 @@ import org.hibernate.SessionFactory; import org.hibernate.classic.Session; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.dbmigration.DatabaseConfigurationContext; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataDAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataDAO.java index 6f0e7e3325d7ccb31178e127f618171429afb8fd..ac0bbbc81e7e926815de7dd71959b1fe49b0ce67 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataDAO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataDAO.java @@ -47,7 +47,7 @@ import ch.systemsx.cisd.common.collection.CollectionStyle; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.collection.IToStringConverter; import ch.systemsx.cisd.common.collection.ToStringDefaultConverter; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.reflection.MethodUtils; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataSetTypeDAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataSetTypeDAO.java index 171754768e78895bc12fbcbd0e8ea77489666c5d..bed2eacae72bb5676c95f61d9182a10385a1fa93 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataSetTypeDAO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DataSetTypeDAO.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess.db; import org.hibernate.SessionFactory; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDataSetTypeDAO; import ch.systemsx.cisd.openbis.generic.shared.dto.DataSetTypePE; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/EntityValidationInterceptor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/EntityValidationInterceptor.java index c378005c158cd2ef5529ae2463dce258f5b1c96a..413004a24b5857f887421fee2d01b26aaaed191a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/EntityValidationInterceptor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/EntityValidationInterceptor.java @@ -29,7 +29,7 @@ import org.hibernate.type.Type; import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.DynamicPropertyEvaluator; import ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.IDynamicPropertyEvaluator; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/HibernateSearchDAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/HibernateSearchDAO.java index 26b2bfae3faea20e8a11edc5beef0ec1f7636332..16923f9793438942cbf7c9dd887fb7ca221961b2 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/HibernateSearchDAO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/HibernateSearchDAO.java @@ -57,7 +57,7 @@ import org.springframework.jdbc.support.JdbcAccessor; import org.springframework.orm.hibernate3.HibernateCallback; import org.springframework.orm.hibernate3.support.HibernateDaoSupport; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IHibernateSearchDAO; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/OpenBISHibernateTransactionManager.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/OpenBISHibernateTransactionManager.java index c4e34d9d1fc204cdf16ad63049f693a86f9a5234..aa194994e985755e34ded5590635db1d7c86e9bf 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/OpenBISHibernateTransactionManager.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/OpenBISHibernateTransactionManager.java @@ -109,7 +109,7 @@ public class OpenBISHibernateTransactionManager extends HibernateTransactionMana String rollBackReason = rolledBackTransactions.get(tx); if (rollBackReason != null) { - throw new ch.systemsx.cisd.common.exception.UserFailureException(rollBackReason); + throw new ch.systemsx.cisd.common.exceptions.UserFailureException(rollBackReason); } else { throw ex; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/LuceneQueryBuilder.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/LuceneQueryBuilder.java index 8b760aa7a97d92687133f67d0f604d29dec823c6..39c0bf28fb646b5fda057d204a55f6040b068ac3 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/LuceneQueryBuilder.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/LuceneQueryBuilder.java @@ -29,7 +29,7 @@ import org.apache.lucene.search.BooleanQuery; import org.apache.lucene.search.Query; import org.apache.lucene.util.Version; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.search.detailed.DetailedQueryBuilder; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DetailedSearchAssociationCriteria; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DetailedSearchCriteria; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/DetailedQueryBuilder.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/DetailedQueryBuilder.java index 252d95ef0845bfb4270200044226031da758d768..2c0843ec20c2f155450cdef3dcd09e937ba4d678 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/DetailedQueryBuilder.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/DetailedQueryBuilder.java @@ -34,8 +34,8 @@ import org.apache.lucene.search.TermRangeQuery; import org.hibernate.search.annotations.Resolution; import org.hibernate.search.bridge.builtin.DateBridge; -import ch.systemsx.cisd.common.exception.InternalErr; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.InternalErr; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.MetaprojectSearch; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/IndexFieldNameHelper.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/IndexFieldNameHelper.java index 821e3421cf9a39af7dc4b72aa8bde327ae528066..8641d6e8076af28c8984d040f0dd4016c097c98f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/IndexFieldNameHelper.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/search/detailed/IndexFieldNameHelper.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess.db.search.detailed; import static ch.systemsx.cisd.openbis.generic.shared.dto.hibernate.SearchFieldConstants.CODE; -import ch.systemsx.cisd.common.exception.InternalErr; +import ch.systemsx.cisd.common.exceptions.InternalErr; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.AssociatedEntityKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetAttributeSearchFieldKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityKind; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/EncapsulatedCommonServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/EncapsulatedCommonServer.java index 122a546c94b0460b3eaca96bb7bb7519b237e79c..caa6d4fbb2781c1a91071f29c707db1a30ff1350 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/EncapsulatedCommonServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/EncapsulatedCommonServer.java @@ -21,7 +21,7 @@ import java.util.List; import org.apache.commons.lang.time.DateUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.common.spring.HttpInvokerUtils; import ch.systemsx.cisd.common.ssl.SslCertificateHelper; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/MasterDataRegistrationException.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/MasterDataRegistrationException.java index 269c9f4d2b302f599386483ad947beacbd56316c..9d5501c7b5d7274800baf3f9b0d68971f8b1014b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/MasterDataRegistrationException.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/jython/api/v1/impl/MasterDataRegistrationException.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl; import java.util.List; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogLevel; import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataTransactionErrors.TransactionError; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/plugin/ISampleTypeSlaveServerPlugin.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/plugin/ISampleTypeSlaveServerPlugin.java index 659e6909025f9a9ea881a54361ec9220a90b07f8..5f6f870cc51068a573b5c50540d735d074fdf4e6 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/plugin/ISampleTypeSlaveServerPlugin.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/plugin/ISampleTypeSlaveServerPlugin.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.server.plugin; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.DAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTask.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTask.java index ac170bef88586dbaf72784329d620265d3a04596..29e7bc451261ae888e182e576a2a3f7fb6441fc0 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTask.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTask.java @@ -47,8 +47,8 @@ import org.springframework.jdbc.support.JdbcUtils; import org.springframework.jdbc.support.MetaDataAccessException; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/util/SpaceIdentifierHelper.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/util/SpaceIdentifierHelper.java index 36f9bb02426522ac4df10dfec55590c9297421c2..61ea2a8c444d317b84622d52a28b7265fe86de7f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/util/SpaceIdentifierHelper.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/util/SpaceIdentifierHelper.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.openbis.generic.server.util; import java.util.List; import ch.systemsx.cisd.common.collection.TableMap; -import ch.systemsx.cisd.common.exception.InternalErr; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.InternalErr; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAuthorizationDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.ISpaceDAO; import ch.systemsx.cisd.openbis.generic.server.dataaccess.util.KeyExtractorFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/AbstractServerLogger.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/AbstractServerLogger.java index fe3c4ae5e7db26a4f7ac9d862594853192ff0edc..197c751748ecbf1342bb160fc8f1eb312a962122 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/AbstractServerLogger.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/AbstractServerLogger.java @@ -25,8 +25,8 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.authentication.ILogMessagePrefixGenerator; import ch.systemsx.cisd.authentication.ISessionManager; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ICommonServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ICommonServer.java index a421077214c2ba3f10be6419b243827cbe2b51fb..101aee494af3cdb904f7e9275c70018d19ff2a1d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ICommonServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ICommonServer.java @@ -24,7 +24,7 @@ import java.util.Set; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject.IMetaprojectId; import ch.systemsx.cisd.openbis.generic.shared.basic.IEntityInformationHolder; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IDataStoreService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IDataStoreService.java index 2bf39a876b6c9e65738fa88de1ccef8c0bfed0a8..acbfa7594f8ffdd1d366434d948dc465fe42f694 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IDataStoreService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IDataStoreService.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.shared; import java.util.List; import java.util.Map; -import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; +import ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException; import ch.systemsx.cisd.openbis.common.conversation.annotation.Conversational; import ch.systemsx.cisd.openbis.common.conversation.annotation.Progress; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CustomImportFile; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IETLLIMSService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IETLLIMSService.java index 9019da138ff898cdb3559c94a16fd90aa6acdd4e..c696b6dac654d06eff0f258b4dba801f404b26ec 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IETLLIMSService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IETLLIMSService.java @@ -22,7 +22,7 @@ import java.util.List; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.conversation.annotation.Conversational; import ch.systemsx.cisd.openbis.common.conversation.annotation.Progress; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IServer.java index 9278f57f89e3d55134a0a63351bdbe27898446a6..8e81125f3317c1ae2374f1e27186ec08ceee4872 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/IServer.java @@ -20,9 +20,9 @@ import java.util.List; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.InvalidSessionException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DatabaseModificationKind.ObjectKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DisplaySettings; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ISessionProvider.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ISessionProvider.java index 268d26889711e46e08e7181bc1d16fcb5d8fcf70..c38e9a0ed13491a6b389a3b4a482af0bdd1c165d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ISessionProvider.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/ISessionProvider.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.IAuthSession; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectName.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectName.java index 8104e235c2d85c258c0ba8899e80fe25102e72f1..46ff3bf6f3e389b231810f72e57743eb2b553a72 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectName.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectName.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic; import java.util.regex.Pattern; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Metaproject name representation. The name cannot be null, empty or contain white spaces, commas, diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppProperties.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppProperties.java index aa7b18cbedc3b5852cad553d3a2ede1bafe144cd..e6e5c6e49395453491682470b07d27b73c7edb7e 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppProperties.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppProperties.java @@ -20,7 +20,7 @@ import java.util.HashMap; import java.util.Map; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.WebAppProperty; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/StandardFunctions.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/StandardFunctions.java index 9888af4230bc15383a7e905b2a75bfb1a5c5a911..9b496251648ab3d9d59342983b36007e0f759bac 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/StandardFunctions.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/StandardFunctions.java @@ -32,7 +32,7 @@ import org.apache.commons.lang.StringEscapeUtils; import org.apache.commons.lang.StringUtils; import org.xml.sax.InputSource; -import ch.systemsx.cisd.common.exception.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.customcolumn.core.CustomColumnMethod; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.customcolumn.extension.link.CustomColumnLinkParam; import ch.systemsx.cisd.openbis.generic.shared.calculator.customcolumn.CustomColumnJSONBuilder; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/customcolumn/CustomColumnJSONBuilder.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/customcolumn/CustomColumnJSONBuilder.java index 30d48271b9784ba2fe69abc9b9ff4a93f94ed84d..3d9a66f969e294159c84ab4651819e650d6c8ffa 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/customcolumn/CustomColumnJSONBuilder.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/calculator/customcolumn/CustomColumnJSONBuilder.java @@ -22,7 +22,7 @@ import java.util.Map; import com.fasterxml.jackson.databind.ObjectMapper; -import ch.systemsx.cisd.common.exception.ExceptionUtils; +import ch.systemsx.cisd.common.exceptions.ExceptionUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.customcolumn.core.CustomColumnParam; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScanner.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScanner.java index a57857dce2d83b43ed504bd48a00a127218a47cd..c7e553d853d60523c970bee7655aa70015a31859 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScanner.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScanner.java @@ -22,7 +22,7 @@ import java.util.Collections; import java.util.Iterator; import java.util.List; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjector.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjector.java index 80e37ce9af6674a5b6790f164612bfa13bc14a2b..dafeb30571e9a5174c76117bf238e9e468a04441 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjector.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjector.java @@ -32,8 +32,8 @@ import java.util.TreeSet; import org.apache.commons.io.IOUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.Log4jSimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledChecker.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledChecker.java index c05e07f72d1f2a071c4bcbe97c1eec3f5b13a49c..a14bcd010e07319245413b42108c5693f301793e 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledChecker.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledChecker.java @@ -22,7 +22,7 @@ import java.util.Properties; import java.util.regex.Pattern; import java.util.regex.PatternSyntaxException; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.generic.shared.Constants; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/exception/UndefinedSpaceException.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/exception/UndefinedSpaceException.java index 3063032a749cff24c7e7ca36e4d944d6affabff2..06325e17d2d173f739fcbe1396a5f06ea719187c 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/exception/UndefinedSpaceException.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/exception/UndefinedSpaceException.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.dto.exception; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * This <code>UserFailureException</code> extension signals that no space has been specified. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/AbstractIdentifierFactory.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/AbstractIdentifierFactory.java index 2503b36bdfb7e6bd7ee3d383cc3f0d804bde258b..3a2b9bc70f9198801428adcd5fc7fc837dfefa88 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/AbstractIdentifierFactory.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/AbstractIdentifierFactory.java @@ -21,7 +21,7 @@ import java.util.regex.Pattern; import org.apache.commons.lang.StringUtils; import org.apache.commons.lang.builder.ToStringBuilder; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.reflection.ModifiedShortPrefixToStringStyle; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.DatabaseInstanceIdentifier.Constants; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ExperimentIdentifierFactory.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ExperimentIdentifierFactory.java index 8067f25be90a1b29014585240980a1c85fc0de16..83890635e5eadb3d978d37ccec25f2dd82a7adba 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ExperimentIdentifierFactory.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ExperimentIdentifierFactory.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.shared.dto.identifier; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Parses the given text in the constructor to extract the database instance, group, project and diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/IdentifierHelper.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/IdentifierHelper.java index 46397a8bd4f0af2150d6e5cb005ff1c0013b9455..3a99377113f59ac130c229ea16d46cb1548e4997 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/IdentifierHelper.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/IdentifierHelper.java @@ -21,7 +21,7 @@ import java.util.List; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewExperiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSamplesWithTypes; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ProjectIdentifierFactory.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ProjectIdentifierFactory.java index 837829e579f74effe11a369539dc0dc0724c1974..deddd764e4f0b31dcc699b64e6fd60f91ed599dd 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ProjectIdentifierFactory.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/ProjectIdentifierFactory.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.dto.identifier; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Parses the given text in the constructor to extract the database instance, the space and the diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifier.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifier.java index 351492bf4442372b687484f40048f3669afe3a24..4005a1461854dbda6c5d56b796e0e3b47402d784 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifier.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifier.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.dto.identifier; -import ch.systemsx.cisd.common.exception.InternalErr; +import ch.systemsx.cisd.common.exceptions.InternalErr; import ch.systemsx.cisd.openbis.generic.shared.IServer; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifierFactory.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifierFactory.java index 516ae7284c8c5cd9de9253d5212dd0467c1c5778..0ca1f0edf2eceeebc3c71bf60ec8c799a8e0dd6b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifierFactory.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SampleIdentifierFactory.java @@ -21,7 +21,7 @@ import static ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SampleIdent import org.apache.commons.lang.ArrayUtils; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Sample; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.DatabaseInstanceIdentifier.Constants; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SpaceIdentifierFactory.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SpaceIdentifierFactory.java index 3455bdf26337fc0ae9012fc786ad2e8d0dac0dd9..6248ac549fdab7b00bdeeaea9a442de3a3f325fb 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SpaceIdentifierFactory.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/identifier/SpaceIdentifierFactory.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.dto.identifier; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Parses the given text in the constructor to extract the database instance and data space. The diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/api/ISimpleTableModelBuilderAdaptor.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/api/ISimpleTableModelBuilderAdaptor.java index 5e9cf7712bffd63029ca5d37916709f90ed6ab26..540fe223c717d5f02312ac1fd24dc43ac0f2d233 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/api/ISimpleTableModelBuilderAdaptor.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/api/ISimpleTableModelBuilderAdaptor.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.managed_property.api; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.ITableModel; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/JsonStructuredPropertyConverter.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/JsonStructuredPropertyConverter.java index a383c7662495debf6d07af24b13c347adebf4012..8bc476bccabe8f57ad57994ae137d9996821f455 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/JsonStructuredPropertyConverter.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/JsonStructuredPropertyConverter.java @@ -33,7 +33,7 @@ import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.node.ArrayNode; import com.fasterxml.jackson.databind.node.ObjectNode; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ManagedProperty; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedProperty; import ch.systemsx.cisd.openbis.generic.shared.managed_property.api.EntityLinkElementKind; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/XmlOrJsonStructuredPropertyConverter.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/XmlOrJsonStructuredPropertyConverter.java index 95e9d07bf1e14ca38fc107069c07d8b1b960e427..8b1680908c9beabf70d24f2dd1270fb6792cd8ee 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/XmlOrJsonStructuredPropertyConverter.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/managed_property/structured/XmlOrJsonStructuredPropertyConverter.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.managed_property.structured; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedProperty; import ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElement; import ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IStructuredPropertyConverter; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisExcelFileLoader.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisExcelFileLoader.java index 7a14fd3cb9da988536c63715b4c05f1064912833..56556fce0f7cff0b748e1123c184b29560258261 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisExcelFileLoader.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisExcelFileLoader.java @@ -21,7 +21,7 @@ import java.util.Map; import org.apache.poi.ss.usermodel.Sheet; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.NamedReader; import ch.systemsx.cisd.common.parser.ExcelFileLoader; import ch.systemsx.cisd.common.parser.IParserObjectFactoryFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisTabFileLoader.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisTabFileLoader.java index 66450dcdeb5349e83cfd2a9ad66763cdcc5f376d..5f80d90cb4f1caacc29d5834792651572952f150 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisTabFileLoader.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/BisTabFileLoader.java @@ -20,7 +20,7 @@ import java.io.Reader; import java.util.List; import java.util.Map; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.NamedReader; import ch.systemsx.cisd.common.parser.IParserObjectFactoryFactory; import ch.systemsx.cisd.common.parser.ParserException; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/ExcelFileSection.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/ExcelFileSection.java index 4705e6ce0edecc39a79052db3633180d98db0e7b..8f8282d67b6aeaaa670690c9e1760b78e30ec517 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/ExcelFileSection.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/ExcelFileSection.java @@ -32,7 +32,7 @@ import org.apache.poi.ss.usermodel.Workbook; import org.apache.poi.xssf.usermodel.XSSFWorkbook; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author Pawel Glyzewski diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/FileSection.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/FileSection.java index 344534327cc55cfbe1edaefe82cf854d28728e36..307f16bc52995c3116edb0b3ef182022b13ee2fc 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/FileSection.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/parser/FileSection.java @@ -9,7 +9,7 @@ import java.util.List; import org.apache.commons.io.IOUtils; import org.apache.commons.io.LineIterator; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.string.UnicodeUtils; public class FileSection diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/CacheManager.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/CacheManager.java index 4a66a8e0444b41ff82b6971b10158fd1e86da9bc..8c9f00f26fcbf9ba6ce3200d0e27fe53d6bacd58 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/CacheManager.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/CacheManager.java @@ -34,7 +34,7 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.HostAwareFile; import ch.systemsx.cisd.common.filesystem.IFreeSpaceProvider; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/DatabaseInstanceIdentifierHelper.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/DatabaseInstanceIdentifierHelper.java index 55128e785c0ffc3713ca7653bd48dc4bc1f95abc..154265e58566481e27ea0f58beaf54e444cd9162 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/DatabaseInstanceIdentifierHelper.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/DatabaseInstanceIdentifierHelper.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.util; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.IDatabaseInstanceFinder; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.DatabaseInstanceIdentifier; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/ServerUtils.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/ServerUtils.java index 7f48ae3bdab9a481b9ffa0962d48187cd8e7003c..b878cf0f62595b8985d1e4232360b33f2f150ea6 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/ServerUtils.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/ServerUtils.java @@ -24,7 +24,7 @@ import java.util.List; import java.util.Set; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Tools to be used by servers. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimplePropertyValidator.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimplePropertyValidator.java index 03dbb37fe8eceef5ff329163ed7b86911b1d792f..d3d8065aceb4de3e78a3e799d9b0322fac43d567 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimplePropertyValidator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimplePropertyValidator.java @@ -28,7 +28,7 @@ import org.apache.commons.lang.ArrayUtils; import org.apache.commons.lang.time.DateFormatUtils; import org.apache.commons.lang.time.DateUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyUtils.Boolean; import ch.systemsx.cisd.openbis.generic.shared.basic.BasicConstant; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilder.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilder.java index 3d5d5bdbfd8d4d023319901cd28d7a8d2eb84a7b..899113bd1bc9d6258c0f85639bad5748dcf4da83 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilder.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilder.java @@ -22,7 +22,7 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.common.utilities.Counters; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtils.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtils.java index ca28615b956ba6ad7ba6a43e56506d6d4ee932c6..3388155555ce54559f07cedd617cd5c8cf6c4dc7 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtils.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtils.java @@ -42,7 +42,7 @@ import org.xml.sax.InputSource; import org.xml.sax.SAXException; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.xml.XMLInfraStructure; /** diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/server/DemoServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/server/DemoServer.java index b74b35d37f4db2409c9f526418cd4ee8eb7f06be..5f99ea2f628d3a185dbdc1f75282f0546a7c5742 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/server/DemoServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/server/DemoServer.java @@ -24,8 +24,8 @@ import org.springframework.stereotype.Component; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.NotImplementedException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.NotImplementedException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.AuthorizationGuard; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/shared/IDemoServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/shared/IDemoServer.java index e528090b83d5e69336dbd3ce6ab5615bfcad3f98..c50ee03544ad265ce58f8631e67aa79ca7ec2458 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/shared/IDemoServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/demo/shared/IDemoServer.java @@ -20,7 +20,7 @@ import java.util.Collection; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.DatabaseCreateOrDeleteModification; import ch.systemsx.cisd.openbis.generic.shared.IServer; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/client/web/server/GenericClientService.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/client/web/server/GenericClientService.java index 926400048d557b55fb00af5010287258387bf10e..b2d429103e6e7126c97cbba3906db329391667f6 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/client/web/server/GenericClientService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/client/web/server/GenericClientService.java @@ -133,7 +133,7 @@ public class GenericClientService extends AbstractClientService implements IGene genericServer.getSampleInfo(sessionToken, sampleId); transformXML(sampleParentWithDerived.getParent()); return sampleParentWithDerived; - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } @@ -175,7 +175,7 @@ public class GenericClientService extends AbstractClientService implements IGene final String sessionToken = getSessionToken(); genericServer.registerOrUpdateSamples(sessionToken, info.getSamples()); return info.getResultList(); - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { if (e.getCause() instanceof SampleUniqueCodeViolationExceptionAbstract) { @@ -249,7 +249,7 @@ public class GenericClientService extends AbstractClientService implements IGene results.addAll(samplesInfo.getResultList()); return results; } - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } finally @@ -270,7 +270,7 @@ public class GenericClientService extends AbstractClientService implements IGene final String sessionToken = getSessionToken(); genericServer.updateSamples(sessionToken, info.getSamples()); return info.getResultList(); - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } @@ -286,7 +286,7 @@ public class GenericClientService extends AbstractClientService implements IGene final ExternalData dataset = genericServer.getDataSetInfo(sessionToken, datasetId); transformXML(dataset); return dataset; - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } @@ -555,7 +555,7 @@ public class GenericClientService extends AbstractClientService implements IGene final String sessionToken = getSessionToken(); return genericServer.updateMaterial(sessionToken, materialId, properties, metaprojects, version); - } catch (final ch.systemsx.cisd.common.exception.UserFailureException e) + } catch (final ch.systemsx.cisd.common.exceptions.UserFailureException e) { throw UserFailureExceptionTranslator.translate(e); } diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceChecker.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceChecker.java index 9e40824317826baa4adcd1c7e5ed3b8efb9ec3f1..016eb1c34162e2b88292363c962c309798a7a6c9 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceChecker.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceChecker.java @@ -22,7 +22,7 @@ import java.util.List; import java.util.Map; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.ISampleDAO; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityType; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericSampleTypeSlaveServerPlugin.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericSampleTypeSlaveServerPlugin.java index 9d4e7a5caf96b4e0105a04d67ba44007da7ffaf6..22ca374dbbbbff9e0f499bd5dd1745431c86de9d 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericSampleTypeSlaveServerPlugin.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericSampleTypeSlaveServerPlugin.java @@ -22,7 +22,7 @@ import javax.annotation.Resource; import org.springframework.stereotype.Component; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.ComponentNames; import ch.systemsx.cisd.openbis.generic.server.batch.BatchOperationExecutor; import ch.systemsx.cisd.openbis.generic.server.batch.SampleBatchRegistration; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServer.java index 4e10887991ec2107353eaebfcf75bbd0b4c8c71f..df497c386deb0bd38b65fd0c7a499eab7784e401 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServer.java @@ -32,7 +32,7 @@ import org.springframework.stereotype.Component; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.IASyncAction; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerLogger.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerLogger.java index 5c6e64c5023ee7448b78a8632fd1faba2014a11b..9e144aac90e7fd391790be289946cad9ba3c5012 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerLogger.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerLogger.java @@ -23,7 +23,7 @@ import java.util.List; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerLogger; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/shared/IGenericServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/shared/IGenericServer.java index 778fccf7e685224074a0172cc01aafdb6623d33c..21944471f6fdc793125ce90debe37de97492183f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/shared/IGenericServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/generic/shared/IGenericServer.java @@ -22,7 +22,7 @@ import java.util.List; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.DatabaseCreateOrDeleteModification; import ch.systemsx.cisd.openbis.generic.shared.DatabaseUpdateModification; import ch.systemsx.cisd.openbis.generic.shared.IServer; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/client/web/server/QueryClientService.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/client/web/server/QueryClientService.java index 8e6f593f47d4061c0b23cf9ffb3e3a72a3c00d25..99504a396279b311fe2ff634fda402f65f027226 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/client/web/server/QueryClientService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/client/web/server/QueryClientService.java @@ -26,7 +26,7 @@ import javax.annotation.Resource; import org.springframework.stereotype.Component; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.servlet.IRequestContextProvider; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.IResultSetConfig; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.TableExportCriteria; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/DAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/DAO.java index c886b06b008f855142bc3869a07e12517383b26d..62a9da0fcc05e16118a6e71f6549247c50d01a6b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/DAO.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/DAO.java @@ -35,7 +35,7 @@ import org.springframework.jdbc.core.PreparedStatementCallback; import org.springframework.jdbc.core.simple.SimpleJdbcDaoSupport; import org.springframework.jdbc.support.JdbcUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.string.Template; import ch.systemsx.cisd.common.utilities.Counters; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DateTableCell; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryDatabaseDefinitionProvider.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryDatabaseDefinitionProvider.java index 936907f66081542f778938b04492605ab243586d..ae566336b90419d872b485c188c2b3481cae0220 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryDatabaseDefinitionProvider.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryDatabaseDefinitionProvider.java @@ -27,7 +27,7 @@ import javax.annotation.Resource; import org.springframework.stereotype.Component; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.properties.PropertyParametersUtil; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryServer.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryServer.java index b42ca7bbdc13084762c2d08e8534d6e898f07bc4..30a60e2c67d800ef34e19cb25bda54e2a138d4bf 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryServer.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryServer.java @@ -30,7 +30,7 @@ import org.springframework.stereotype.Component; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ReturnValueFilter; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/authorization/QueryAccessController.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/authorization/QueryAccessController.java index b1e186605b81ebf963ac78308cf62bbee78a5b1e..9f4f9f2fd74564df09ff20b16365e2a9b4af0e06 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/authorization/QueryAccessController.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/server/authorization/QueryAccessController.java @@ -20,7 +20,7 @@ import java.util.Map; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/translator/QueryTranslator.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/translator/QueryTranslator.java index 4ae71925871472526545b14e58bca2164b2dbcfa..3dd5a07e8ab542d4fe7621129351b7867c8f36e0 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/translator/QueryTranslator.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/translator/QueryTranslator.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.translator; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.ExpressionUtil; import ch.systemsx.cisd.openbis.generic.shared.dto.QueryPE; import ch.systemsx.cisd.openbis.generic.shared.translator.GridCustomExpressionTranslator; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServletTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServletTest.java index 3edf32bf943105a08ff64fd15a0a5c63e975c26a..8ae3b28ace5c20bcc76f856fcc83a785b2427a91 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServletTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/UploadServiceServletTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.servlet.IRequestContextProvider; import ch.systemsx.cisd.openbis.generic.client.web.server.UploadServiceServlet.ISessionFilesSetter; import ch.systemsx.cisd.openbis.generic.client.web.server.UploadServiceServlet.SessionFilesSetter; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/CachedResultSetManagerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/CachedResultSetManagerTest.java index 8c5d359a8e35b1a1b47ae07fcec18a7d1610644d..5260ac348bfb8da8cf93a06ee31aeb80b34de186 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/CachedResultSetManagerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/client/web/server/resultset/CachedResultSetManagerTest.java @@ -32,7 +32,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.client.web.client.application.ui.columns.specific.GridCustomColumnDefinition; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.ColumnDistinctValues; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.CustomFilterInfo; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/CommonServerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/CommonServerTest.java index 629f3156846cb0fa17affd5a303a5645d769f871..03d967aa456347f56518d9b9703e6082d77d5a27 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/CommonServerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/CommonServerTest.java @@ -33,7 +33,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.ICommonBusinessObjectFactory; import ch.systemsx.cisd.openbis.generic.server.plugin.IDataSetTypeSlaveServerPlugin; import ch.systemsx.cisd.openbis.generic.server.plugin.ISampleTypeSlaveServerPlugin; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceDatabaseTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceDatabaseTest.java index 59106962902891bc137783a6d41a6ba8390ca3a8..4ce9409d3cb02243eb7bd448786a0061ade9e6a6 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceDatabaseTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceDatabaseTest.java @@ -35,7 +35,7 @@ import org.springframework.beans.factory.annotation.Autowired; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.AbstractDAOTest; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceTest.java index 77961d5b048a8ca90a8982a72ec9ba337959a20b..fdf57ecddc389c1cddfd4d3bb85440a851bfeeec 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/ETLServiceTest.java @@ -36,8 +36,8 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.generic.server.business.IDataStoreServiceFactory; import ch.systemsx.cisd.openbis.generic.server.business.IServiceConversationClientManagerLocal; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessControllerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessControllerTest.java index d83337f4f0c634ce54c5452407c40eccf75205e7..8760f13fda4b5b14a27c000c4edb01873bed151b 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessControllerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/DefaultAccessControllerTest.java @@ -33,8 +33,8 @@ import org.testng.annotations.BeforeTest; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.Capability; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.RolesAllowed; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutorTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutorTest.java index 02d9055577c5f5bb5f3ffc83b29a2a2da7bca729..c302e76fb531076d5392e2166590de83e84ba58e 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutorTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/PredicateExecutorTest.java @@ -25,7 +25,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.string.StringUtilities; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.IPredicate; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IAuthorizationDAOFactory; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicateTest.java index 2418804dee8957b28ff9953d1027c04d2c90f705..f19970722cf34f7c25b4fca89e539d8f98c0ed6f 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdCollectionPredicateTest.java @@ -23,7 +23,7 @@ import java.util.List; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.SpaceOwnerKind; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractTechIdCollectionPredicate.DataSetTechIdCollectionPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicateTest.java index 09dcbf992116d133f650287550f06318d31d1375..448df13bc340a6da85524de657dcc7cc827f9d4d 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/AbstractTechIdPredicateTest.java @@ -21,8 +21,8 @@ import java.util.List; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.SpaceOwnerKind; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractTechIdPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicateTest.java index 205dc27dc879bf807c9e6b5ff5452257de51f10e..eaa2aa0d585a845b9a9dfcdc7c624c030b678c0d 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ArrayPredicateTest.java @@ -22,7 +22,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.ArrayPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicateTest.java index 94235dfcd1be91606a4bee56b246f000643334ea..dbe50eaddb091352b40e16a6f0513a2cf747c08e 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/CollectionPredicateTest.java @@ -24,7 +24,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.CollectionPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicateTest.java index 66660ba5f203bc0fbbcb596ce2493b1e157d768a..9e12ae65e0f23c3445d3d45569a34fe33006e079 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetCodePredicateTest.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.DataSetCodePredicate; import ch.systemsx.cisd.openbis.generic.shared.dto.DataSetAccessPE; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicateTest.java index 520d0af38724e55bc4417776c132179855405dae..34d3d8bfebdae85c7f9fd5ddca81fce25aa3aeec 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DataSetUpdatesCollectionPredicateTest.java @@ -22,7 +22,7 @@ import java.util.HashSet; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.SpaceOwnerKind; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.DataSetUpdatesCollectionPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicateTest.java index 41250b033dd4f026d39564a3257b7a0e2491b515..fcfbbfca2aad8c28e27a40adcfaa89c258592bad 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/DatabaseInstanceIdentifierPredicateTest.java @@ -19,9 +19,9 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.DatabaseInstanceIdentifierPredicate; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicateTest.java index bb4f3cafdcd708ec7f0636897b9bbdd001fea750..1b2e28ee5d3bba950031dfe2d8931a90f83a5395 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ListSampleCriteriaPredicateTest.java @@ -23,7 +23,7 @@ import java.util.HashSet; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.SpaceOwnerKind; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplePredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplePredicateTest.java index 62542b23512710d6b555388c44984fb5a121278e..6e83036f2fee4d943bd4593dfe5916d13d3eae44 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplePredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplePredicateTest.java @@ -21,7 +21,7 @@ import java.util.List; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.SampleType; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicateTest.java index f81634dc4fb477755c6cec386eb241c955514692..285e62d32252e80ad6bc38b8c229d6e7c3985450 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/NewSamplesWithTypePredicateTest.java @@ -23,7 +23,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.IPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectPredicateTest.java index 33f2253b8c223d5b921a9b49179c29d9c1da87b7..8a39a2c8c4ff540cee46f3054ba74ac386d9706a 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/ProjectPredicateTest.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.authorization.predicate; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.ProjectPredicate; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicateTest.java index 689c98cb11564d82ae3ffcb34930c82a3865badc..0d6cd965b8e6a977ddfa6bef01d55ef5d9f5f00c 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleOwnerIdentifierPredicateTest.java @@ -20,7 +20,7 @@ import java.util.List; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.SampleOwnerIdentifierPredicate; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicateTest.java index 9ed5c40710502f7ed173567c87f04b81de0f19a2..3e5ccde1077aa463c4ad54a611e7a0fb8762e76c 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SampleUpdatesCollectionPredicateTest.java @@ -22,7 +22,7 @@ import java.util.HashSet; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.dto.SampleAccessPE; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicateTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicateTest.java index dadae107b5ed05700ba4e017a98dd4841a457da5..36f1ebe3988f726792e52bf3e97c91a301d8bb6f 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicateTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/authorization/predicate/SpaceIdentifierPredicateTest.java @@ -21,9 +21,9 @@ import java.util.List; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.StatusFlag; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.StatusFlag; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.AuthorizationTestCase; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.SpaceIdentifierPredicate; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManagerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManagerTest.java index 9bc5bb3b8c82914f203cee0332fee153f8dfba72..8a5b48e0fbed36c947a87c82946c5ee46b158cdb 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManagerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/PropertiesBatchManagerTest.java @@ -23,7 +23,7 @@ import java.util.Set; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IEntityProperty; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IPropertiesBean; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewBasicExperiment; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBOTest.java index 54b8a6e3ca6b73a5c232c6792cc02220217f4da5..8edf0c1898b1a0eb799c6036dce7516eeb929ac4 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/AuthorizationGroupBOTest.java @@ -22,7 +22,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.server.business.bo.AuthorizationGroupBO.IAuthorizationGroupFactory; import ch.systemsx.cisd.openbis.generic.shared.CommonTestUtils; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTableTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTableTest.java index ba39f02ba09775388598c88ba988dba2bb667c6d..a14ab3e023aadf6067420b99646c13f823604f58 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTableTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/CorePluginTableTest.java @@ -26,7 +26,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.generic.server.coreplugin.AsCorePluginPaths; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBOTest.java index 43ece0eb89b21766675a24e0e7131ce715caa5dd..55f9553db12e5626d2912ecad4338066320f0e9e 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataBOTest.java @@ -32,7 +32,7 @@ import org.hamcrest.Description; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.Constants; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTableTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTableTest.java index 3f090bb614ab36daf87b58d655ed299a4f39eb05..0ba15dd81164edb3e3e3494a901172064a5f105e 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTableTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/DataSetTableTest.java @@ -38,7 +38,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.IDataStoreServiceFactory; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.server.dataaccess.event.DeleteDataSetEventBuilder; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBOTest.java index 7e89973442e366d2339b9d3b234e71db18723343..67b65b432adc3a9e762d1d814edb155354617c81 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/EntityTypeBOTest.java @@ -23,7 +23,7 @@ import java.util.Arrays; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.dto.SampleTypePE; import ch.systemsx.cisd.openbis.generic.shared.dto.builders.SampleTypePEBuilder; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBOTest.java index 9884c1bd9c192e55137f572d43def4e7fada9a7f..70a950cf9f313e02a9a0e26f92e995a24a6a09b9 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ExperimentBOTest.java @@ -32,7 +32,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.AssertionUtil; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.CommonTestUtils; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBOTest.java index 9eebaae3890ba1d0c2d89245524f95ce159c3a70..c741bad6cc1186fb56e18895786db6d372ab45d0 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ProjectBOTest.java @@ -27,7 +27,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBOTest.java index 8a324a9d98684c6039bd9a2be587625c2b4adbb0..782cd6e0056230a86d3055ae9cf4a2870aa4aaea 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyTypeBOTest.java @@ -21,7 +21,7 @@ import org.springframework.dao.DataIntegrityViolationException; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.xml.XMLInfraStructure; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.CommonTestUtils; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyValidatorTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyValidatorTest.java index c62f13f35630f98d4e9d85393ee7ff8595c475ad..c556f96dd633264ecc8a6bd474166c63382bdaa8 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyValidatorTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/PropertyValidatorTest.java @@ -25,7 +25,7 @@ import org.testng.annotations.DataProvider; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.PropertyValidator; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; import ch.systemsx.cisd.openbis.generic.shared.dto.DataTypePE; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBOTest.java index 83ae2fec2860c2a3b379475cb75337486399941d..601b613b10a4e89e8e33d488084762a6efaab1ca 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleBOTest.java @@ -35,8 +35,8 @@ import org.hamcrest.Description; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.CommonTestUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRulesTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRulesTest.java index 15c4a049678a3806358cd81dd03fe7b7f7241663..d0170bc3656efefb1b1655c462316cbc4ab98ed2 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRulesTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleGenericBusinessRulesTest.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.server.business.bo; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.BasicConstant; import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE; import ch.systemsx.cisd.openbis.generic.shared.dto.RelationshipTypePE; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTableTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTableTest.java index 4049b289bbc217c647f6e7c6cc16bd21e3c543cc..ed847d85b51410312626453878cf431a2e6df8c1 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTableTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/SampleTableTest.java @@ -25,7 +25,7 @@ import java.util.List; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.dto.IAuthSession; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBOTest.java index 07f50bb492cbba73484659e31ed0bf2f0050a292..94ae1ba83933776be01725df262aceca155ce8ed 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/ScriptBOTest.java @@ -23,7 +23,7 @@ import org.testng.annotations.DataProvider; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBOTest.java index 08a19f51172d7829a7ea10eb10e78474b769d57e..dedf858d281d95c260b823920dbf75cd4d78a09d 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/TrashBOTest.java @@ -25,7 +25,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBOTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBOTest.java index 7af8baa7a67cf708a12c3caa51c65fa527af85aa..94fb3b26f402b933346ce174aa5774300614247f 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBOTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/VocabularyBOTest.java @@ -30,7 +30,7 @@ import org.springframework.dao.DataIntegrityViolationException; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewVocabulary; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.UpdatedVocabularyTerm; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetListerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetListerTest.java index 3d0225c818a04e833228bf835981b94d57a08f1c..2d371bf7e70431c7b77f211b933863c6c0678b5c 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetListerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/bo/fetchoptions/datasetlister/DataSetListerTest.java @@ -39,7 +39,7 @@ import net.lemnik.eodsql.TransactionQuery; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.api.v1.ResourceNames; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.EntityListingTestUtils; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.AbstractDAOTest; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporterTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporterTest.java index 345356cde276e1fe3a539fe128e96f59c4b1df8e..130f44a09c9518a78df650381fca59f22e6c29bb 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporterTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/business/importer/DatabaseInstanceImporterTest.java @@ -36,7 +36,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.utilities.IExitHandler; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProviderTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProviderTest.java index cae119feb855e4d5bba126e9291fca29ff63adc1..1f6c4d9dbe513b9a6615151b2caae89145e815c4 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProviderTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/DataStoreServerBasedDataSourceProviderTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; /** * @author Franz-Josef Elmer diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverterTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverterTest.java index ec3f455863f0c3c625beab2c05572f62c34f63d2..7ae610c722e79a05b53fd5565095c33b91f4e696 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverterTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/EntityPropertiesConverterTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.generic.server.business.ManagerTestTool; import ch.systemsx.cisd.openbis.generic.server.business.bo.AbstractBOTest; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseCreationUtil.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseCreationUtil.java index 250d5698224d107bb5c489c63b4ecee1c27b41ad..961a9febf408b913786534830ee65d498341f9aa 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseCreationUtil.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseCreationUtil.java @@ -23,7 +23,7 @@ import org.springframework.beans.factory.BeanFactory; import org.springframework.context.support.AbstractApplicationContext; import org.springframework.context.support.ClassPathXmlApplicationContext; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.dbmigration.DBMigrationEngine; import ch.systemsx.cisd.dbmigration.DatabaseConfigurationContext; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/DataSetRegistrationSummaryTaskTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/DataSetRegistrationSummaryTaskTest.java index a5360ce235f3cd2255cb859be08933835edab6d1..a3a9877a2a3f5549aa65cb05ecfe8087d4add677 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/DataSetRegistrationSummaryTaskTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/DataSetRegistrationSummaryTaskTest.java @@ -36,7 +36,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.mail.IMailClient; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTaskTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTaskTest.java index 059cd32053622488a65dea5f1826ba40cbf6e253..a6336961efbf171028be00eb3e1ecb49e4b1d829 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTaskTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/server/task/MaterialExternalDBSyncTaskTest.java @@ -43,8 +43,8 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.common.utilities.ITimeProvider; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectNameTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectNameTest.java index a662717cb823858794648aff2610d763a68349e6..d556ac6d1d9b976165173db8f99892a13b2456d0 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectNameTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/MetaprojectNameTest.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * @author pkupczyk diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppsPropertiesTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppsPropertiesTest.java index 4c5cd478d934c343383f47a07cd207ccc2d5d322..2032666f6ec56d25bbfdc7b7b0c1a03785fa95b8 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppsPropertiesTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/basic/WebAppsPropertiesTest.java @@ -26,7 +26,7 @@ import junit.framework.Assert; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.WebApp; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScannerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScannerTest.java index f1b8af4202f27c531b865286a62889e1f60eb337..3a7d56cf7ee9c4c38db5765a630d99b203c50a2d 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScannerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginScannerTest.java @@ -25,7 +25,7 @@ import org.apache.commons.io.FileUtils; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.MockLogger; import ch.systemsx.cisd.openbis.generic.server.coreplugin.AsCorePluginPaths; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CorePlugin; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjectorTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjectorTest.java index 7e1eb12f8d071516f19da2e70fbb8ff951b7094c..1c7b0724c0dd13d5679ddc4d30442e16566894a5 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjectorTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/CorePluginsInjectorTest.java @@ -37,8 +37,8 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogLevel; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledCheckerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledCheckerTest.java index ac1a4c4381177800ce08652c19f2f1fb748679d7..0618f8267ee476e6f94dae4cd2a55eff7af75c73 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledCheckerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/coreplugin/ModuleEnabledCheckerTest.java @@ -23,7 +23,7 @@ import junit.framework.TestCase; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.openbis.generic.shared.Constants; /** diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/dto/builders/ExternalDataPEBuilder.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/dto/builders/ExternalDataPEBuilder.java index 351589a2f80b15c4e1d7379df99299a0a1d9d2ba..09e7f1a803f0f9be1f15c48b8af027501d3071a7 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/dto/builders/ExternalDataPEBuilder.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/dto/builders/ExternalDataPEBuilder.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.dto.builders; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.CommonTestUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilderTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilderTest.java index bc9e928bb1820467449728e3cce1cfe9a49ba6d5..63a539b6274b648915a4cf0c35168250bdb56e10 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilderTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/SimpleTableModelBuilderTest.java @@ -22,7 +22,7 @@ import java.util.List; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DateTableCell; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DoubleTableCell; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtilsTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtilsTest.java index a7f2279e5d1d9d6cbb8cfb67704ac5434b6e8bd2..8763fe0e04b8f6cecfb52a26804699a5d258d83d 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtilsTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/generic/shared/util/XmlUtilsTest.java @@ -28,7 +28,7 @@ import org.w3c.dom.Document; import org.xml.sax.SAXException; import org.xml.sax.SAXParseException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.xml.XMLInfraStructure; /** diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceCheckerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceCheckerTest.java index 4bf42bcecf68304873038b5ee441be82dd9a0842..3d191f63a048fa68056adde91441a8b72659a274 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceCheckerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/EntityExistenceCheckerTest.java @@ -28,7 +28,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IEntityTypeDAO; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerDatabaseTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerDatabaseTest.java index cd62ba930c80401a3694e4ac9cb5ea55ea1ef84b..1cc7192b7e8df8119d99569a76092a906f8ce110 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerDatabaseTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerDatabaseTest.java @@ -27,7 +27,7 @@ import junit.framework.Assert; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.AbstractDAOTest; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetBatchUpdateDetails; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerTest.java index 83dbb8d2eeb3923de7ea31006ecc04e75a26d94f..b32b639794257446f35484de15878b3431d1789c 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/generic/server/GenericServerTest.java @@ -32,7 +32,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.plugin.IDataSetTypeSlaveServerPlugin; import ch.systemsx.cisd.openbis.generic.server.plugin.ISampleTypeSlaveServerPlugin; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerTestCase; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryApiServerJsonTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryApiServerJsonTest.java index 7ccf94f4e99bce28597c8cf3d9bc8ee562e9a41b..7418b307aebc3417823046af9680f50b7be0c3e1 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryApiServerJsonTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/plugin/query/server/QueryApiServerJsonTest.java @@ -28,7 +28,7 @@ import jline.ConsoleReader; import com.googlecode.jsonrpc4j.JsonRpcHttpClient; import com.googlecode.jsonrpc4j.ProxyUtil; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.json.GenericObjectMapper; import ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer; import ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToExperimentTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToExperimentTest.java index 475bf9051679a4ed509b6e245d03917bf14a2b8d..9c878ccdc1adee10ae8080e237860b3307107628 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToExperimentTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToExperimentTest.java @@ -22,7 +22,7 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToSampleTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToSampleTest.java index 77628d1d854c97094b9270f2d6a238971acf3bc9..1612093c9b15915847083546f82545de9515b8e0 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToSampleTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignDataSetToSampleTest.java @@ -22,8 +22,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignExperimentToProjectTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignExperimentToProjectTest.java index c9fd64b91b8e75e4c1b41b426797ef146556f7d4..3f6f98ae2d2d46b846cb3627425834d8a4c4f3b5 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignExperimentToProjectTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignExperimentToProjectTest.java @@ -22,7 +22,7 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignProjectToSpaceTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignProjectToSpaceTest.java index 6cad3d6cc8f102795fa9dbb58013e7b1c63b4643..e2b8cac271d1d36cad644a5ed95a31461467d6d3 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignProjectToSpaceTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignProjectToSpaceTest.java @@ -22,7 +22,7 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToExperimentTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToExperimentTest.java index 853ebcaff853939fc58140df315c76cd452383b4..70a7cb2106eec6a1c756facfcad397e3f4ac402a 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToExperimentTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToExperimentTest.java @@ -22,8 +22,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToSpaceTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToSpaceTest.java index 35a35aa7c784a23ee30509837b71db5deeb702ff..f0007adab31ba54d44f6ff4a8d42cfdcdec23886 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToSpaceTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/AssignSampleToSpaceTest.java @@ -22,7 +22,7 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/DeletionTestCase.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/DeletionTestCase.java index cabdba3781a4ec52715fd804472394a66f073bb6..1862bea7ed77c9747a6e194720a594c42a7b004f 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/DeletionTestCase.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/DeletionTestCase.java @@ -36,7 +36,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.DefaultResultSetConfig; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.GridRowModels; import ch.systemsx.cisd.openbis.generic.client.web.client.dto.SessionContext; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/EntityOperationTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/EntityOperationTest.java index fdd59ba70b03ca647eec3303993d983a1da6b006..02700b22fc2abff21132674bd7d4bb77954de265 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/EntityOperationTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/EntityOperationTest.java @@ -28,7 +28,7 @@ import java.util.Map; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSet; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/RelationshipServiceAuthorizationTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/RelationshipServiceAuthorizationTest.java index bea40475c3a4f8801e4fc02e27ad94a04cba61fa..b6745e81773f2eda9712df549b8ea8c664be9b00 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/RelationshipServiceAuthorizationTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/RelationshipServiceAuthorizationTest.java @@ -20,7 +20,7 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/SetSessionUserTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/SetSessionUserTest.java index 874fc43801b1bee23978879278206f7ca3342f44..52c6ea37bde87e6382977b8d4ea31d9fd64d47de 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/SetSessionUserTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/SetSessionUserTest.java @@ -26,8 +26,8 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.openbis.generic.server.WhiteListBasedRemoteHostValidator; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ListSampleCriteria; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromExperimentTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromExperimentTest.java index 87bb9632938c2fdba423fa5cca2f3382710bf9ac..b536576058649f184ce9bfa6fc1c894924f7cda6 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromExperimentTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromExperimentTest.java @@ -22,8 +22,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromSpaceTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromSpaceTest.java index 9f4fe0b2fd4693eafa5b86ce1a0b022b0f4a7bcf..8a72af8918badcfe114c514919cb4dadebc056b0 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromSpaceTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UnassignSampleFromSpaceTest.java @@ -22,8 +22,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetContainmentTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetContainmentTest.java index 1dbe8246827b20da49c9cb78bcd113e360b98444..0ffd7aaa38c3214b636842065327b85cc6c15df7 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetContainmentTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetContainmentTest.java @@ -20,8 +20,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetParentsTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetParentsTest.java index 19dd29f2e2b50d0b1bd533aa6a4b0d3d73d1350e..1c4102ff04cf0f18671927c22a49c8da83690a66 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetParentsTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateDataSetParentsTest.java @@ -20,8 +20,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Project; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleContainmentTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleContainmentTest.java index 143c3212b65c587529d45587b7d3b6f5cbf8c67b..45766938eb8f35b14817e2422d38f90138a8f8af 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleContainmentTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleContainmentTest.java @@ -20,8 +20,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Sample; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Space; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleParentsTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleParentsTest.java index 80da7e97f2767a66b5be28ffee86b78f520a4647..e31fd5b60804db4c0c67dcdbf61fa745f8a04c64 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleParentsTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/UpdateSampleParentsTest.java @@ -20,8 +20,8 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Sample; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Space; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationChangingServiceTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationChangingServiceTest.java index 1ccf53942aa4ee4b4ed2581058a918eb2061c926..46abea7b13ff83300a66d3f3925135585f0d6f5c 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationChangingServiceTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationChangingServiceTest.java @@ -29,8 +29,8 @@ import org.springframework.beans.factory.annotation.Autowired; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.ICommonServer; import ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService; import ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationServiceTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationServiceTest.java index 08303280734c8f6768e906610648a6f8a964e5f9..3702d233686deafd2056ba3606477bda859100b2 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationServiceTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v1/GeneralInformationServiceTest.java @@ -37,7 +37,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/ETLServiceAuthorizationTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/ETLServiceAuthorizationTest.java index f00144ebed41a562b94c47cecf8f01810d97f1a3..495e19ee2bcb75c6eb4e4dfcdac453a5f0e5350e 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/ETLServiceAuthorizationTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/ETLServiceAuthorizationTest.java @@ -27,7 +27,7 @@ import java.util.Map; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ListSampleCriteria; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/GenericServerAuthorizationTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/GenericServerAuthorizationTest.java index eef82f07597c31279477637552d5dbb6c30c09ae..62eedc66abd94b4d24da9c2be89650602252aea0 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/GenericServerAuthorizationTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/GenericServerAuthorizationTest.java @@ -20,7 +20,7 @@ import java.util.Collections; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewAttachment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewSample; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/PersonManagementTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/PersonManagementTest.java index e833c13742f4602ec965b05963f6b29a83e8c0a3..1afef423097fdc0298d0b9778a920f97790ee64b 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/PersonManagementTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/PersonManagementTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.openbis.generic.server.CommonServer; import ch.systemsx.cisd.openbis.generic.server.ETLService; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/QueryServerAuthorizationTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/QueryServerAuthorizationTest.java index 864066a822f58d810efc35c3e913067d39e9a0f3..fa06b93f34fc25b53c9513da52fc78f07860472d 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/QueryServerAuthorizationTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/authorization/QueryServerAuthorizationTest.java @@ -20,7 +20,7 @@ import static org.testng.AssertJUnit.assertEquals; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.QueryType; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Space; diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/optimistic_locking/ExperimentOptimisticLockingTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/optimistic_locking/ExperimentOptimisticLockingTest.java index 0cb3e1bca2436ea6adb122a40b8fce4436b38dac..6d6ce2d1b17934f499bc5b127e74ae7117ab86da 100644 --- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/optimistic_locking/ExperimentOptimisticLockingTest.java +++ b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/optimistic_locking/ExperimentOptimisticLockingTest.java @@ -24,7 +24,7 @@ import java.util.List; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.util.TimeIntervalChecker; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationChangingService.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationChangingService.java index 46f66462ee7cbb09a8e4f4f9ebc32a009e6d3b7e..c626ee7847329b5ef04526414a36f5b262b01970 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationChangingService.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationChangingService.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1; import java.util.Map; import ch.systemsx.cisd.common.api.IRpcService; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationService.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationService.java index a01cbce02440c820f693115a30f26b5c291838d4..800f30a27252bab2da81e3f46e24df98028d782c 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationService.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/IGeneralInformationService.java @@ -23,7 +23,7 @@ import java.util.Map; import java.util.Set; import ch.systemsx.cisd.common.api.IRpcService; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections; diff --git a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/DataSetTypeOracle.java b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/DataSetTypeOracle.java index 9184615593b5c45f7ac5b3d7eae3966f9d1a4474..8e805bfe4ed8d7bb295a270d0b203a7bcec8b1ff 100644 --- a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/DataSetTypeOracle.java +++ b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/DataSetTypeOracle.java @@ -25,8 +25,8 @@ import java.util.Map.Entry; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.FileTypeExtractor; /** diff --git a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/ParentDirectoryDataSetInfoExtractor.java b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/ParentDirectoryDataSetInfoExtractor.java index 1a809f60d27a760b4e430be0d3c46dc4398df1b3..059b8bb868bf667cf5acced2a4ca2fec2297e450 100644 --- a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/ParentDirectoryDataSetInfoExtractor.java +++ b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/ParentDirectoryDataSetInfoExtractor.java @@ -19,8 +19,8 @@ package ch.ethz.bsse.cisd.plasmid.dss; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.AbstractDelegatingDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidDataSetHandler.java b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidDataSetHandler.java index 71c8d95a287e76544c7ac679fce71d7160ee4106..5d6e9220056400de4a53ea0b603fae903c4d2b8d 100644 --- a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidDataSetHandler.java +++ b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidDataSetHandler.java @@ -25,8 +25,8 @@ import java.util.Properties; import org.apache.commons.io.filefilter.HiddenFileFilter; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidStorageProcessor.java b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidStorageProcessor.java index 070ed2b9a9a540f6b63e61d01090a7157465740b..f184bc16ed58f17a145df00e58369f792d9455bc 100644 --- a/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidStorageProcessor.java +++ b/plasmid/source/java/ch/ethz/bsse/cisd/plasmid/dss/PlasmidStorageProcessor.java @@ -24,7 +24,7 @@ import org.apache.log4j.Logger; import ch.ethz.bsse.cisd.plasmid.plasmapper.PlasMapperUploader; import ch.ethz.bsse.cisd.plasmid.plasmapper.PlasMapperUploader.PlasMapperService; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/BundleDownloader.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/BundleDownloader.java index cde805887d691e108e5a1541fca9834d69b5aab2..d0b56786eb13b78a98575b3f469c625e9d291a4c 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/BundleDownloader.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/BundleDownloader.java @@ -23,8 +23,8 @@ import java.util.List; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.BundleStructureConstants; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentLister.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentLister.java index 814130a528f763833870bb54ded369be410ac263..44df620dea40c7a3daefafe3e277032a23fd2651 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentLister.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentLister.java @@ -21,8 +21,8 @@ import java.util.Map; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.GlobalArguments; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGenerateSampleCode.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGenerateSampleCode.java index a0e3c03abd7defe17e9ea240e9af2a734192a5d0..4e11e7baeded79493263218ffef48bb6c42c894f 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGenerateSampleCode.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGenerateSampleCode.java @@ -17,8 +17,8 @@ package ch.systemsx.cisd.cina.client.util.cli; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.GlobalArguments; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundle.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundle.java index c43608310ca638ac797b515aaa497716bca702ae..297c63d0b0035d9cf981941928ae706c0826ae55 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundle.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundle.java @@ -22,8 +22,8 @@ import java.util.List; import ch.systemsx.cisd.args4j.Option; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.GlobalArguments; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplica.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplica.java index e7704e8b4b49aa5f7ed4e2247d11e570fa56cd0a..c377b3132c990c7324f667247a700f2c3d6d450e 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplica.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplica.java @@ -22,8 +22,8 @@ import java.util.List; import ch.systemsx.cisd.args4j.Option; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.GlobalArguments; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesLister.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesLister.java index 59726d44ce7aa0db74f15fc40862290ed1220d50..dd335f42b5958d8ca7ef92be68705b8be6172e5f 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesLister.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesLister.java @@ -23,8 +23,8 @@ import java.util.List; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.GlobalArguments; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleLister.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleLister.java index a27521f88a131da10590d3eaf668652891c87d6a..3cb1a9325f12c4c34d88309af90d7ef6a2822295 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleLister.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleLister.java @@ -21,8 +21,8 @@ import java.util.Map; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.GlobalArguments; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/ReplicaDownloader.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/ReplicaDownloader.java index 057b1819192304bf4256512d607515ae9d26b9b0..8250e91d5f1736d38f5806238a17120fe9cf33b2 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/ReplicaDownloader.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/cli/ReplicaDownloader.java @@ -23,8 +23,8 @@ import java.util.List; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.BundleStructureConstants; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/ICinaUtilities.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/ICinaUtilities.java index 1fb1ab865007036f1d23212699e799f0d370a3f6..b4f23100744f8d65338052830edae490b219686d 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/ICinaUtilities.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/ICinaUtilities.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.cina.client.util.v1; import java.util.List; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/impl/CinaUtilitiesFacade.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/impl/CinaUtilitiesFacade.java index 6495d4bba95f10d96326a90f18d162db670fdf7e..4af8196849a2ec60243efe212e4bc265a03fc532 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/impl/CinaUtilitiesFacade.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/client/util/v1/impl/CinaUtilitiesFacade.java @@ -23,9 +23,9 @@ import org.springframework.remoting.RemoteConnectFailureException; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent; import ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent; diff --git a/rtd_cina/source/java/ch/systemsx/cisd/cina/dss/bundle/CinaBundleDataSetInfoExtractor.java b/rtd_cina/source/java/ch/systemsx/cisd/cina/dss/bundle/CinaBundleDataSetInfoExtractor.java index 621a96f1ba42d13b5610eb2e650c9d543c2b98fa..501369b6fd8aeba8652ad5d400e9c4f4f5f1fd3b 100644 --- a/rtd_cina/source/java/ch/systemsx/cisd/cina/dss/bundle/CinaBundleDataSetInfoExtractor.java +++ b/rtd_cina/source/java/ch/systemsx/cisd/cina/dss/bundle/CinaBundleDataSetInfoExtractor.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.cina.dss.bundle; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentListerTest.java b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentListerTest.java index ad0f8b98f2600cc38d39936a3dc85d1908b3c2ee..31ade6a1dbb5185aae311a7533c78c2f53fce702 100644 --- a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentListerTest.java +++ b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandExperimentListerTest.java @@ -26,7 +26,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.ICommand; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; diff --git a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundleTest.java b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundleTest.java index c599e37700cca2dfefc5e9adc1f756a162afcd3c..3f0ed7baa2474de73c324ece275c39216dbf79a0 100644 --- a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundleTest.java +++ b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetBundleTest.java @@ -36,7 +36,7 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.BundleStructureConstants; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.ICommand; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; diff --git a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplicaTest.java b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplicaTest.java index f48be9b6f8cdffc08567c0da7412b582aabfe96c..4be4a33216b4c87cdd4500b3180b38e2b2b3da3f 100644 --- a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplicaTest.java +++ b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandGetReplicaTest.java @@ -34,7 +34,7 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.BundleStructureConstants; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.ICommand; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; diff --git a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesListerTest.java b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesListerTest.java index 44b6df5151661c415a96f77235a3998572d786e8..086c02ae80f3798655a6ee991056abf5417bb7c5 100644 --- a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesListerTest.java +++ b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandPreferencesListerTest.java @@ -27,7 +27,7 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.ICommand; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; diff --git a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleListerTest.java b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleListerTest.java index b2cbdda6a9fca8b2a0c545d8196f2bc937d765f6..af7cf5e809f04297f457135df6a1a4ad87fb00d8 100644 --- a/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleListerTest.java +++ b/rtd_cina/sourceTest/java/ch/systemsx/cisd/cina/client/util/cli/CommandSampleListerTest.java @@ -28,7 +28,7 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.cina.client.util.cli.CommandSampleLister; import ch.systemsx.cisd.cina.client.util.v1.ICinaUtilities; import ch.systemsx.cisd.cina.shared.constants.CinaConstants; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.client.api.cli.ICommand; import ch.systemsx.cisd.openbis.dss.client.api.cli.ResultCode; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReport.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReport.java index c61fe1de35686655b02ac5c456a7f00bd4536a9d..fce71ab2dc105ede3f2c26fc1983e79ebb08a828 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReport.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReport.java @@ -39,9 +39,9 @@ import com.csvreader.CsvReader; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.string.Template; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractTableModelReportingPlugin; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopier.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopier.java index e639ec5e0e775d6e16226d82dc4c23e1c5dfc322..4e5fcc682f0962b4f7d75af6cbe62382a9685da1 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopier.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopier.java @@ -24,9 +24,9 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.ExceptionWithStatus; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ExceptionWithStatus; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandler.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandler.java index 973d3d643559b5eef4085b13905b4b1b3e3accc8..392589c0ca2412b6a246e7831ec97a04540ddba9 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandler.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandler.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.etlserver.proteomics; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.Experiment; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.Parameter; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjection.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjection.java index f1444322f3ea2ff85148b32cf223b4c6d143db06..65e5bdc7047d7fac5899dd255e7a2003218fe4d3 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjection.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjection.java @@ -27,8 +27,8 @@ import java.util.Set; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResults.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResults.java index 218b70c7b779a7c30517924ab42f10c7a32c73cf..f4af5f02988bd1f873ea0e3d1ecd95d5bf51f68d 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResults.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResults.java @@ -24,8 +24,8 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.PropertyIOUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ModificationFractionHandler.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ModificationFractionHandler.java index 86b4ce4f16307e64727cedda3a0605bbb016146c..fdf2c118531586f1b799421453e64c7c86d8c7f2 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ModificationFractionHandler.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ModificationFractionHandler.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.etlserver.proteomics; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.Experiment; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.Sample; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploader.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploader.java index e5870f0118e22b43c3a50e852902d196ed410714..6c9b459f4805f0fbb29b23be7d5d724865af3dca 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploader.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploader.java @@ -26,7 +26,7 @@ import javax.sql.DataSource; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescription.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescription.java index 1c076991aebc603cc6faff93941c4ad535b6ec3c..1fbf6cf26f47c7ce42fa67ccdc5744ab2d021148 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescription.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescription.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.etlserver.proteomics; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.ProteinAnnotation; final class ProteinDescription diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploader.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploader.java index 897b694b7281ebd000be5f0d64748bdf609f3e5a..c12c66e204b8629c182aed92c38626bfb4fd91a8 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploader.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploader.java @@ -31,7 +31,7 @@ import net.lemnik.eodsql.QueryTool; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.AminoAcidMass; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/Util.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/Util.java index 6c80df8cb8af5c909ef670d87ed72cdbb32fb3ea..85bd6a5709d6ae995f93ead6560f54628694a448 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/Util.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/etlserver/proteomics/Util.java @@ -21,7 +21,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.PropertyIOUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityProperty; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityType; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/resultset/ProteinProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/resultset/ProteinProvider.java index 0575c44fef92c6d84a4eb1f988a40f491b5dc8dc..ec68195623f00e11d9c8e22edf7acabffeb2c496 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/resultset/ProteinProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/resultset/ProteinProvider.java @@ -27,7 +27,7 @@ import java.util.Map.Entry; import java.util.Set; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.openbis.generic.client.web.server.resultset.AbstractTableModelProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TypedTableModel; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServer.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServer.java index d234ff2c50d25ab73fbf2a881fe2d745dd664007..4a6df1022e553d39007880dbe6b8dfbd62a13d41 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServer.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServer.java @@ -26,7 +26,7 @@ import org.springframework.stereotype.Component; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.AuthorizationGuard; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServerLogger.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServerLogger.java index 6d3db78b32fc5ccdb8fefdfbb484858f3217662f..0a2b8f448b4e20d9be3720779352a1b4cad8743b 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServerLogger.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/PhosphoNetXServerLogger.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.proteomics.server; import java.util.List; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerLogger; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/ProteomicsDataServiceInternal.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/ProteomicsDataServiceInternal.java index e731c5e129ca3168ddbd673ddf60d91becc08ba1..9ed2eb43d33a5439c049ebc832b0efa4e0209877 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/ProteomicsDataServiceInternal.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/ProteomicsDataServiceInternal.java @@ -26,8 +26,8 @@ import java.util.Map.Entry; import java.util.Set; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.AuthorizationGuard; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataService.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataService.java index 0715f98626fa59d8c076d6c373772f63f314a9d8..bda34e6c5d6fb7fbd37aff15ab503bf038430818 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataService.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataService.java @@ -31,7 +31,7 @@ import javax.annotation.Resource; import org.springframework.stereotype.Component; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.RolesAllowed; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleIDProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleIDProvider.java index 8c8a989b608bda03fbe32240d207b65de33aae10..9e69dba7f5161705dccd566edb0d437b9dbadfac 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleIDProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleIDProvider.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.proteomics.server.business; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE; /** diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleProvider.java index cd2585bc43e8eb02a5a175ee14544b1898905151..47423c1036b006d2ed37fec2dcfee8ab682e6181 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/ISampleProvider.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.proteomics.server.business; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Sample; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProvider.java index a87ccba8a769712dc3dbd0a6dd150e04bfbaadc8..f452b4d64db50210f4ee55d210ac4bc2144300c2 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProvider.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.proteomics.server.business; import java.util.LinkedHashMap; import java.util.Map; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.ISampleDAO; import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE; import ch.systemsx.cisd.openbis.generic.shared.util.HibernateUtils; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProvider.java index 469dc8e64350fd49bccb90b8780d5d783b0ea805..235ca4ab24103036ba982157af3249ca4927721b 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProvider.java @@ -22,7 +22,7 @@ import java.util.List; import java.util.Map; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.samplelister.ISampleLister; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ListOrSearchSampleCriteria; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinder.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinder.java index 64e5f6f7501ef8e39b864417f31d863507d1c49b..95d0ea3cbac3ed244391cd0be6f3763ed5a0b64e 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinder.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinder.java @@ -26,7 +26,7 @@ import java.util.Map; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IEntityProperty; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Material; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/dataaccess/db/PhosphoNetXDAOFactory.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/dataaccess/db/PhosphoNetXDAOFactory.java index e321085d4a42e073851c09ebc36dddc45e661021..b7c5551d42fe9607b2015b87abbf28c075c744cd 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/dataaccess/db/PhosphoNetXDAOFactory.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/dataaccess/db/PhosphoNetXDAOFactory.java @@ -28,7 +28,7 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/shared/IPhosphoNetXServer.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/shared/IPhosphoNetXServer.java index 360c78db836d60858a61eca25676e3481fd7bc56..102159813051c89ce00f2b088af1b82384a079cf 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/shared/IPhosphoNetXServer.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/proteomics/shared/IPhosphoNetXServer.java @@ -20,7 +20,7 @@ import java.util.List; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.IServer; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Vocabulary; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReportTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReportTest.java index daadd3c0eab0df4e50ab564d4e82a381cfcda109..35070f23bab03986746817086e725901fe154f91 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReportTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/APMSReportTest.java @@ -41,7 +41,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.mail.IMailClient; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopierTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopierTest.java index 6e4af2d48971264ffd37c4a40987270954900909..8bb45ea937e2160cb000b394e3520c99bca03aef 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopierTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/dss/proteomics/server/plugins/LocalAndRemoteCopierTest.java @@ -36,9 +36,9 @@ import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.concurrent.ExecutionResult; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IPathCopier; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandlerTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandlerTest.java index 4613a2f895c6e1e0d1c41ef0a176e674fd36f08c..609dfce3818f11c7ab957e625ed03a45945a8619 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandlerTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/AbundanceHandlerTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.Experiment; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.Parameter; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjectionTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjectionTest.java index 0c47aa2baf21fe167f150ce8173bcb64ec02a56c..4ee281ab208d86e892f69f1c9a324a1849cf817c 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjectionTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForMSInjectionTest.java @@ -49,8 +49,8 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResultsTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResultsTest.java index 90914d0faab01e79b93d3d1da14bbdd9bfd54192..9e8d428db15d452cc3207e2808548b52866bda9e 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResultsTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/DataSetInfoExtractorForProteinResultsTest.java @@ -37,7 +37,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploaderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploaderTest.java index 1375f14e04cc655b5173688a9549344a8203327a..5c4912e98d1a80d73cb770967c2078ab97cd9b44 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploaderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProtXMLUploaderTest.java @@ -24,7 +24,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescriptionTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescriptionTest.java index b617b8b0b64222ea6e1aad0b64ded73ee90d1650..7a46c8d4e3f7d60d020c6a5d0c76549344c52421 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescriptionTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ProteinDescriptionTest.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.etlserver.proteomics; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.etlserver.proteomics.ProteinDescription; import ch.systemsx.cisd.openbis.etlserver.proteomics.dto.ProteinAnnotation; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploaderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploaderTest.java index f2476642689d35a6f2944b063ad4238a5677b3c2..eddaf7d8ec10769f5861120378fb70e352a6208b 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploaderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/ResultDataSetUploaderTest.java @@ -34,7 +34,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.AssertionUtil; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/TypeExtractorForMSInjectionTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/TypeExtractorForMSInjectionTest.java index 4bd3d3cde31c651afe6896dd8e151da6c6e69623..827639db04e67c3c0b70018e4f8d88b73f3d7b41 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/TypeExtractorForMSInjectionTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/TypeExtractorForMSInjectionTest.java @@ -24,7 +24,7 @@ import java.util.Properties; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.etlserver.proteomics.TypeExtractorForMSInjection; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/UtilTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/UtilTest.java index 0b09d8dce867ed2ff43445fb2e18db2ea313a67c..69eaac2c5798df1487a97fff6647582a59b2175e 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/UtilTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/proteomics/UtilTest.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.etlserver.proteomics.Util; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IEntityProperty; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.PropertyType; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/PhosphoNetXClientServiceTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/PhosphoNetXClientServiceTest.java index 567611f7d278e9c50036e026356362b615ec7459..ba183c3281470cec6efac069c6a1a7c00906b690 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/PhosphoNetXClientServiceTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/client/web/server/PhosphoNetXClientServiceTest.java @@ -34,7 +34,7 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.servlet.IRequestContextProvider; import ch.systemsx.cisd.common.utilities.MockTimeProvider; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataServiceTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataServiceTest.java index 5196e4e359404e00db870100717e5dd930ce0039..0dee7975f7e8d1453e50df085a8efd3f07ba9a20 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataServiceTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/api/v1/ProteomicsDataServiceTest.java @@ -32,7 +32,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerTestCase; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataStoreServiceKind; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProviderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProviderTest.java index 98ca1d9d7197c86c2ca7b4ef13987c715c03adc7..0196a241d724afc78a001c3b701a472888173378 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProviderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleIDProviderTest.java @@ -20,7 +20,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerTestCase; import ch.systemsx.cisd.openbis.generic.shared.basic.BasicConstant; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProviderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProviderTest.java index d83098c7d7481b78d77ff5fa58f84f3d2c2f7746..e6d775a7f951bff433baf0a5579b127431ac630a 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProviderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/SampleProviderTest.java @@ -29,7 +29,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.authentication.Principal; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.samplelister.ISampleLister; import ch.systemsx.cisd.openbis.generic.shared.CommonTestUtils; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinderTest.java index e64e2bfcef1f4c8ea95d282292c362fd9567569c..7b78de517a9594aa4752bc3a86661e38fea4dde6 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/proteomics/server/business/TreatmentFinderTest.java @@ -25,7 +25,7 @@ import java.util.List; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataType; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityProperty; diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/proteomics/systemtests/ServerAuthorizationTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/proteomics/systemtests/ServerAuthorizationTest.java index 2a59322efadd00071993512053e19793df1aba0f..a21d116b54abac9417c571910a84beda57129758 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/proteomics/systemtests/ServerAuthorizationTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/proteomics/systemtests/ServerAuthorizationTest.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.proteomics.systemtests; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleCode; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SpaceIdentifier; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/openbis/dss/yeastx/server/EICMLChromatogramGeneratorServlet.java b/rtd_yeastx/source/java/ch/systemsx/cisd/openbis/dss/yeastx/server/EICMLChromatogramGeneratorServlet.java index 69b056f031d02d6117648a96374d059b66a5eb04..09f0d87c72fb1675c04326d38e08ff82878544cb 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/openbis/dss/yeastx/server/EICMLChromatogramGeneratorServlet.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/openbis/dss/yeastx/server/EICMLChromatogramGeneratorServlet.java @@ -26,8 +26,8 @@ import javax.servlet.http.HttpServletResponse; import javax.servlet.http.HttpSession; import javax.sql.DataSource; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractDatasetDownloadServlet; import ch.systemsx.cisd.openbis.dss.generic.server.Utils; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSourceProvider; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetHandler.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetHandler.java index 61c0c6a04e15624298de123bc755efb0e003d5a7..b68aa8654d7897888a7c791ce2a0827bd34f45ce 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetHandler.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetHandler.java @@ -27,7 +27,7 @@ import java.util.Set; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.collection.TableMap; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetInfoExtractor.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetInfoExtractor.java index f1fe286fa2b1fbacc536eed41b9ba9dda6211d4f..27f54a4cbb2b45b00baf16387ddd9fa55d581a4b 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetInfoExtractor.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/BatchDataSetInfoExtractor.java @@ -22,8 +22,8 @@ import java.util.Properties; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.DataSetInfoFileNameDecorator; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DatasetMappingResolver.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DatasetMappingResolver.java index d49f4c80e164cfb90d9c1c681fb94e840ef2f756..cd7eb60c2c8292153a4cff4729783cc15e761f9b 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DatasetMappingResolver.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DatasetMappingResolver.java @@ -23,8 +23,8 @@ import org.apache.commons.io.FilenameUtils; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Sample; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DropboxProcessingPluginYeastX.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DropboxProcessingPluginYeastX.java index 7ff240f38403efb5fe551f33f1cb1292b182483b..eb01f10a959adafcea761eb1ad1f944638bc3d67 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DropboxProcessingPluginYeastX.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/DropboxProcessingPluginYeastX.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.yeastx.etl; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractDropboxProcessingPlugin; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/ML2DatabaseUploader.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/ML2DatabaseUploader.java index f10d6ac35e3a47a036b2052c01aa6e7acce8862f..443164c17cd327028cb93d38fbc391ad2b418010 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/ML2DatabaseUploader.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/ML2DatabaseUploader.java @@ -25,7 +25,7 @@ import javax.sql.DataSource; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.etlserver.IDataSetUploader; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/MLArchiverTask.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/MLArchiverTask.java index a41b2867c886c8518b455680db6144404dbcfe34..002de721f466449316acef649bff6c5f574544bd 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/MLArchiverTask.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/MLArchiverTask.java @@ -22,8 +22,8 @@ import java.util.Properties; import javax.sql.DataSource; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractArchiverProcessingPlugin; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLDataSetInfoExtractor.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLDataSetInfoExtractor.java index 23de132b703e475aed02db64890f23b36da39b13..95d1b9c6cada5b8353ceb80861c1de9ad666a5fe 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLDataSetInfoExtractor.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLDataSetInfoExtractor.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.xml.JaxbXmlParser; import ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor; import ch.systemsx.cisd.etlserver.IDataSetInfoExtractor; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLStorageProcessor.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLStorageProcessor.java index 6915af035dffcfd762f21cd468fc426b5e4b016b..eb0571fd39d299c9ad8ae96737cd2ceb35768816 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLStorageProcessor.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/etl/QuantMLStorageProcessor.java @@ -22,7 +22,7 @@ import java.util.Properties; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.etlserver.AbstractDelegatingStorageProcessor; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/mzxml/MzXml2Database.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/mzxml/MzXml2Database.java index b5529c68683a9086922d373b64868b16b6519ad1..2d0aaa9630a34c102f43be7a46fc5b104a4f08bc 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/mzxml/MzXml2Database.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/mzxml/MzXml2Database.java @@ -23,7 +23,7 @@ import java.util.List; import javax.sql.DataSource; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.xml.JaxbXmlParser; import ch.systemsx.cisd.yeastx.db.AbstractDatasetLoader; import ch.systemsx.cisd.yeastx.db.generic.DMDataSetDTO; diff --git a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/utils/XmlUtils.java b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/utils/XmlUtils.java index cded12111cfb7f0f818d9e1482b7ef0f0d45d013..a3c1d6880b916837022f0056c5419a6431551f1e 100644 --- a/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/utils/XmlUtils.java +++ b/rtd_yeastx/source/java/ch/systemsx/cisd/yeastx/utils/XmlUtils.java @@ -24,7 +24,7 @@ import javax.xml.datatype.Duration; import ch.systemsx.cisd.base.convert.NativeData; import ch.systemsx.cisd.base.convert.NativeData.ByteOrder; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; /** * Utility methods for parsing XML files. diff --git a/rtd_yeastx/sourceTest/java/ch/systemsx/cisd/yeastx/etl/TypeExtractorYeastXTest.java b/rtd_yeastx/sourceTest/java/ch/systemsx/cisd/yeastx/etl/TypeExtractorYeastXTest.java index 1fd4d4904941ca821b7c60437ac92bf03d94fd88..676b551afc9119dd5278399331de37806ddc7780 100644 --- a/rtd_yeastx/sourceTest/java/ch/systemsx/cisd/yeastx/etl/TypeExtractorYeastXTest.java +++ b/rtd_yeastx/sourceTest/java/ch/systemsx/cisd/yeastx/etl/TypeExtractorYeastXTest.java @@ -23,7 +23,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.etlserver.FileTypeExtractor; import ch.systemsx.cisd.etlserver.ITypeExtractor; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonRollbackTest.java b/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonRollbackTest.java index 1387dd1b891029e55ad89a21b589d13d6495fd69..798aac8b2537e94ef704485392e608adbafe1b4e 100644 --- a/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonRollbackTest.java +++ b/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonRollbackTest.java @@ -41,7 +41,7 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.mail.From; diff --git a/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonTest.java b/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonTest.java index c8285629a5cc87e97075d76ef43cbeee2547f065..d7557892c9d9da2b8acd085ffcd3257c2ea6a48c 100644 --- a/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonTest.java +++ b/sanofi/sourceTest/java/ch/systemsx/cisd/sanofi/dss/test/SanofiDropboxJythonTest.java @@ -39,7 +39,7 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageFileExtractor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageFileExtractor.java index 12ee2ce6326af2addb40d34c8462d86313fa775f..09960e8adea6d243afddc3163f95d71d4e13ad53 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageFileExtractor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageFileExtractor.java @@ -31,8 +31,8 @@ import java.util.Set; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageStorageProcessor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageStorageProcessor.java index 4e79205f7d6cc67aacffc0dcd609fba18398afc7..7abd34affdcecf6f077d4e97bcc7176f1539b26f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageStorageProcessor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/AbstractImageStorageProcessor.java @@ -34,10 +34,10 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.image.IImageTransformerFactory; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.filesystem.IFileOperations; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ComputeIntensityLevelTransformationsMaintenanceTask.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ComputeIntensityLevelTransformationsMaintenanceTask.java index dc52f723e6d7836f2ed204b70816a610706f36e0..3c3081c18534f5c21d0b15bdeaa2fdfbc356e3fc 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ComputeIntensityLevelTransformationsMaintenanceTask.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ComputeIntensityLevelTransformationsMaintenanceTask.java @@ -28,7 +28,7 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.image.IntensityRescaling.Levels; import ch.systemsx.cisd.common.io.PersistentExtendedBlockingQueueDecorator; import ch.systemsx.cisd.common.io.PersistentExtendedBlockingQueueFactory; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSContainerDatasetInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSContainerDatasetInfo.java index e507f5998cca62823272841f3480d01aa25d2340..0fad8f0f0cfb48f69da9dd73c0940db2ab01947a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSContainerDatasetInfo.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSContainerDatasetInfo.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.etl; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor.DatasetOwnerInformation; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Experiment; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/Hdf5ThumbnailGenerator.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/Hdf5ThumbnailGenerator.java index 61d86f02ca4d6ca017e6852bab96287d04f54582..643d466d9ee1778ee1b321595df7e92e21f7fe0d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/Hdf5ThumbnailGenerator.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/Hdf5ThumbnailGenerator.java @@ -37,7 +37,7 @@ import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; import ch.systemsx.cisd.common.concurrent.FailureRecord; import ch.systemsx.cisd.common.concurrent.ITaskExecutor; import ch.systemsx.cisd.common.concurrent.ParallelizedExecutor; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container.IHDF5WriterClient; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageValidator.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageValidator.java index 0e7bc16d117cc6c56f59e543811b229081541b00..3c6c18cd58d4584c8825be5423c581c073e83e90 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageValidator.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageValidator.java @@ -24,8 +24,8 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.hcs.Geometry; import ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor.DatasetOwnerInformation; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseHelper.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseHelper.java index 43896aa44e7f90ffcad56a89277ce687db757a5d..e73f63d36cbf7f3b92e2943bf6b911c0cd2a10fe 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseHelper.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseHelper.java @@ -24,7 +24,7 @@ import java.util.Map; import java.util.Set; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.etl.dataaccess.IImagingQueryDAO; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.Channel; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColor; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/MicroscopyImageFileExtractor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/MicroscopyImageFileExtractor.java index b165b21a93a1b0f7cdf8a7edba73c0510b8b250b..a4814547e474ed364dc74f4e534a89cedef023e5 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/MicroscopyImageFileExtractor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/MicroscopyImageFileExtractor.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.etl; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.hcs.Location; import ch.systemsx.cisd.openbis.dss.etl.dto.UnparsedImageFileInfo; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ImageFileInfo; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracle.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracle.java index 639af62a27ebb9b5242bb349035614a25beded68..58c3415cf68fbbad650f0a93146d9e89ed92a291 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracle.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracle.java @@ -24,7 +24,7 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; import ch.systemsx.cisd.hcs.Location; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/biozentrum/ImageMetadataExtractor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/biozentrum/ImageMetadataExtractor.java index 690a327059c820648a77d59a6b5a3560ee1a8e32..1318e501f4231a74378454026a47cd33146297e8 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/biozentrum/ImageMetadataExtractor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/biozentrum/ImageMetadataExtractor.java @@ -20,7 +20,7 @@ import java.io.File; import java.util.HashMap; import java.util.Map; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.geometry.SpatialPoint; import ch.systemsx.cisd.imagereaders.IImageReader; import ch.systemsx.cisd.imagereaders.ImageID; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dataaccess/ImagingDatasetLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dataaccess/ImagingDatasetLoader.java index eaa873ee51577b9e4d9cd99ad2c71fafa5fcfa98..e356f48035a8c60abde5c0bbe0c88cd01dc1ca91 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dataaccess/ImagingDatasetLoader.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dataaccess/ImagingDatasetLoader.java @@ -26,7 +26,7 @@ import java.util.Set; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.hcs.Location; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureVectorContainerDataSet.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureVectorContainerDataSet.java index 228a22d5dab11c3648601bc94f55bd7feb9ed818..39fc5a09711862de1692e4fe90e343569fe5814b 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureVectorContainerDataSet.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureVectorContainerDataSet.java @@ -20,7 +20,7 @@ import static ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.Screeni import java.io.File; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSet; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java index 7abdc8f342976062c0308134d26ca05ae82efed6..89b839f83334e8abf2e07b471e5e5e69a054aba7 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java @@ -20,7 +20,7 @@ import java.io.Serializable; import java.util.List; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.Channel; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColorComponent; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ImageFileInfo; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImageDataSet.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImageDataSet.java index dc2847afbe5a1b08adab827c8745bb68d98ab99c..cf3d85ce34b3d6132291e993630efc64589e4e1c 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImageDataSet.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImageDataSet.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSet; /** diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImagingDatasetFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImagingDatasetFactory.java index beb71bcdb54236cffee3442c4a5a9c16a7b96097..2c0fcff7b0f08228a9f25dc03133bb476dd00f04 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImagingDatasetFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/IImagingDatasetFactory.java @@ -20,7 +20,7 @@ import java.io.File; import java.io.IOException; import java.util.Properties; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationService; import ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureVectorDataSetInformation; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ConvertToolImageTransformer.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ConvertToolImageTransformer.java index 96b0d22e33dbbbd062d8daf668cf2dc0da338d45..fd2eeac9d7f87488e9623a7bd30c81e721e7976b 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ConvertToolImageTransformer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ConvertToolImageTransformer.java @@ -36,7 +36,7 @@ import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.image.IStreamingImageTransformer; import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.process.IProcessIOHandler; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformationBuffer.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformationBuffer.java index 3ae71f717bb06636e26f76079027915a0e4b31e9..3d4ff923983d1d297e08c7b3d388c776b9d8e83a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformationBuffer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformationBuffer.java @@ -24,7 +24,7 @@ import java.util.Set; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; /** diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/HCSImageFileExtractor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/HCSImageFileExtractor.java index 2f3322689870995fc78a7b4450834249b6f73adc..652ca1e0ee7db4112fd202f6c73098a6861bbc0f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/HCSImageFileExtractor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/HCSImageFileExtractor.java @@ -29,7 +29,7 @@ import org.apache.commons.io.FilenameUtils; import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.etl.AbstractImageFileExtractor; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ImageFileInfo; import ch.systemsx.cisd.openbis.dss.etl.dynamix.WellLocationMappingUtils.DynamixWellPosition; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java index 4b4daa6291dda85315908c984f1f1d473d099316..d79c972b8ccca47c04058c468f6143ecb9f345b9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java @@ -24,7 +24,7 @@ import java.util.List; import java.util.Properties; import java.util.Set; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.common.utilities.Counters; import ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureDefinition; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessor.java index 1426a23fc1a36e193ef0f2f8fb93016119a7437e..1455b68c8a413c63854962e1d9c95ab1374e15a4 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessor.java @@ -27,7 +27,7 @@ import javax.sql.DataSource; import net.lemnik.eodsql.QueryTool; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.etlserver.AbstractDelegatingStorageProcessor; import ch.systemsx.cisd.etlserver.AbstractDelegatingStorageProcessorTransaction; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForDataAcquisition.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForDataAcquisition.java index 8b02fb8a80119936071f6e330b322331836c8004..b87e1fd27b203a34708eb158b5c6cc2d1196a264 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForDataAcquisition.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForDataAcquisition.java @@ -19,8 +19,8 @@ package ch.systemsx.cisd.openbis.dss.etl.genedata; import java.io.File; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForImageAnalysis.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForImageAnalysis.java index 9ff8eaef6bc2eafcc3b801ded9c2b59ea81d261b..83f0a3dfd196bbd2fdac50f086234eb3247107e7 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForImageAnalysis.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/DataSetInfoExtractorForImageAnalysis.java @@ -20,8 +20,8 @@ import java.io.File; import java.util.Arrays; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessor.java index 54cf211f7408682f1a58d60f07a8a99ba8219de3..8430c838efb81c93eceed6035a0d064f55d9dfc7 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessor.java @@ -28,7 +28,7 @@ import javax.sql.DataSource; import net.lemnik.eodsql.QueryTool; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.etlserver.AbstractDelegatingStorageProcessor; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/GenedataFormatToCanonicalFeatureVector.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/GenedataFormatToCanonicalFeatureVector.java index fa2de5f7c839d800ed30257ede1d293e91f2775e..9dfb7aafd847dba4f7db97b4a4b280e3cfa8916c 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/GenedataFormatToCanonicalFeatureVector.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/genedata/GenedataFormatToCanonicalFeatureVector.java @@ -24,7 +24,7 @@ import java.util.StringTokenizer; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.utilities.Counters; import ch.systemsx.cisd.openbis.dss.etl.featurevector.CanonicalFeatureVector; import ch.systemsx.cisd.openbis.generic.shared.basic.CodeNormalizer; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/ImagingDataSetRegistrationTransaction.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/ImagingDataSetRegistrationTransaction.java index 172d946588aef135e45087402496b351a2d698c1..fcfbd1dc17aa40d095a006e8c5029e1862aa1dd2 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/ImagingDataSetRegistrationTransaction.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/ImagingDataSetRegistrationTransaction.java @@ -31,7 +31,7 @@ import java.util.List; import java.util.Properties; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDataSetHandlerUtils.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDataSetHandlerUtils.java index ef325911cfb47ceb2db186bc3b10a32ff00f7d7a..627f002be3b4e1bcb0896380d7880654633d6762 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDataSetHandlerUtils.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDataSetHandlerUtils.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.etl.jython; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ScreeningConstants; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDatasetFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDatasetFactory.java index 0655c5db140b2564721c047d7da6c358294cb680..3725195121e1f14de133a8e5e86ca516516c1fcb 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDatasetFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/JythonPlateDatasetFactory.java @@ -21,7 +21,7 @@ import java.io.IOException; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.etlserver.registrator.AbstractOmniscientTopLevelDataSetRegistrator.OmniscientTopLevelDataSetRegistratorState; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationService; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/SimpleImageDataSetRegistrator.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/SimpleImageDataSetRegistrator.java index fe2bf44d6ac4ae99abb21d01c8bb8a62f5407b7a..7b3ef1ce99ae70122cf9fde4057324fbbb534ec6 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/SimpleImageDataSetRegistrator.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/jython/SimpleImageDataSetRegistrator.java @@ -32,8 +32,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.image.IntensityRescaling; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/RedoSegmentationOnFailureTask.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/RedoSegmentationOnFailureTask.java index 89b280c40210fe85f26edea6f1eab42121db87e2..73bae9f81005cfb655e2e13ac6d841bc47afcedd 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/RedoSegmentationOnFailureTask.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/RedoSegmentationOnFailureTask.java @@ -25,8 +25,8 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.common.filesystem.FastRecursiveHardLinkMaker; import ch.systemsx.cisd.common.filesystem.IImmutableCopier; import ch.systemsx.cisd.common.logging.LogCategory; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/ScreeningHdf5PostRegistrationTask.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/ScreeningHdf5PostRegistrationTask.java index 3b8b21017f687e701c467a7da9824a01143cc214..731ff12372f63e5a7b929d0f26f3ae97324c751f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/ScreeningHdf5PostRegistrationTask.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/postregistration/ScreeningHdf5PostRegistrationTask.java @@ -24,7 +24,7 @@ import javax.sql.DataSource; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.etlserver.postregistration.DummyPostRegistrationTaskExecutor; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractImagesDownloadServlet.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractImagesDownloadServlet.java index b19435fe458c82513a8d1a69d272f0432c7637df..120eb0d870134b1d4690fe2da818832bded8ccb8 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractImagesDownloadServlet.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractImagesDownloadServlet.java @@ -24,8 +24,8 @@ import javax.servlet.http.HttpServletRequest; import javax.servlet.http.HttpServletResponse; import javax.servlet.http.HttpSession; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.HighLevelException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.HighLevelException; import ch.systemsx.cisd.openbis.dss.generic.server.images.dto.DatasetAcquiredImagesReference; import ch.systemsx.cisd.openbis.dss.generic.server.images.dto.ImageGenerationDescription; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ImageGenerationDescriptionFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ImageGenerationDescriptionFactory.java index 3a9cb6d73c97c15099b7b263decad0c0da411341..26da2da889b1edfd4c03b4938523188687b78215 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ImageGenerationDescriptionFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ImageGenerationDescriptionFactory.java @@ -26,7 +26,7 @@ import java.util.Map.Entry; import javax.servlet.http.HttpServletRequest; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.hcs.Location; import ch.systemsx.cisd.openbis.dss.generic.server.images.dto.DatasetAcquiredImagesReference; import ch.systemsx.cisd.openbis.dss.generic.server.images.dto.ImageChannelStackReference; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/MergingImagesDownloadServlet.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/MergingImagesDownloadServlet.java index 96ceae363c94f90cf8bc33c6c126ed081412d784..5d3dd3deb33d2f1b14e834eeed9b82fbec94664a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/MergingImagesDownloadServlet.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/MergingImagesDownloadServlet.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import java.io.IOException; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.images.ImageChannelsUtils; import ch.systemsx.cisd.openbis.dss.generic.server.images.dto.ImageGenerationDescription; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtils.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtils.java index 9ac6fe3a76fce41bbe3a8d37581d96de546fcd1a..efa301db78ee8aac9870ef22be57524823831f72 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtils.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtils.java @@ -29,8 +29,8 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.image.MixColors; import ch.systemsx.cisd.openbis.common.io.ByteArrayBasedContentNode; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/AbstractSpotImagesTransformerProcessingPlugin.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/AbstractSpotImagesTransformerProcessingPlugin.java index 55d97206a61844ee3af6e6f65797140be1a4bc3d..90706992d04c2a637f97ef79442bc3d804d88e28 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/AbstractSpotImagesTransformerProcessingPlugin.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/AbstractSpotImagesTransformerProcessingPlugin.java @@ -21,7 +21,7 @@ import java.util.List; import java.util.Properties; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractDatastorePlugin; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisGraphReportingPlugin.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisGraphReportingPlugin.java index 72e10894af2a4b8ee7b955810bcf5bf0b3a99f1d..625780192edd00f38152c364325f3814de7ebf22 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisGraphReportingPlugin.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisGraphReportingPlugin.java @@ -21,7 +21,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractTabularDataGraphServlet; import ch.systemsx.cisd.openbis.dss.generic.server.graph.TabularDataGraphCollectionConfiguration; import ch.systemsx.cisd.openbis.dss.generic.server.graph.TabularDataGraphConfiguration; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java index 0e173fddb902b0e4572299e13a21fec92cc529b3..9549a87252a4c74d6d01e9d69e39765aad68e55a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java @@ -39,8 +39,8 @@ import com.googlecode.jsonrpc4j.Base64; import ch.systemsx.cisd.base.image.IImageTransformerFactory; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; import ch.systemsx.cisd.openbis.common.api.server.RpcServiceNameServer; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; import ch.systemsx.cisd.common.io.ConcatenatedFileOutputStreamWriter; import ch.systemsx.cisd.openbis.common.io.HierarchicalContentNodeBasedHierarchicalContentNode; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/logic/ImageRepresentationFormatFinder.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/logic/ImageRepresentationFormatFinder.java index 1320235fcf8af01355c733d99bd6e814b4be4285..9605ee80536d5f528dc71ffbd03c017efcc5ed2d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/logic/ImageRepresentationFormatFinder.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/logic/ImageRepresentationFormatFinder.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.screening.server.logic; import java.util.List; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IImageRepresentationFormatSelectionCriterion; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageRepresentationFormat; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/plugins/MarkerFileCreatingProcessingPlugin.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/plugins/MarkerFileCreatingProcessingPlugin.java index 30da9f0759d1268de75385819e4eb720d3a8c463..330f9af25d6f7f5d0d3988eddbc28c1ea13cde51 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/plugins/MarkerFileCreatingProcessingPlugin.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/plugins/MarkerFileCreatingProcessingPlugin.java @@ -24,7 +24,7 @@ import java.util.Properties; import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java index ee4f281a428f771d976b8ec9546ee56197427f40..79d16cd5e11844a06bf6fe82c4f765e8522cb4fa 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java @@ -24,7 +24,7 @@ import com.googlecode.jsonrpc4j.JsonRpcParam; import ch.systemsx.cisd.base.image.IImageTransformerFactory; import ch.systemsx.cisd.common.api.IRpcService; import ch.systemsx.cisd.common.api.MinimalMinorVersion; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.AuthorizationGuard; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DataSetAccessGuard; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.PrivilegeLevel; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/IScreeningOpenbisServiceFacade.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/IScreeningOpenbisServiceFacade.java index ff823d310d8c0939056fcb35d78f58c7b9a8be00..e5d8f0c887a9d48702153a43574e945df5b088f6 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/IScreeningOpenbisServiceFacade.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/IScreeningOpenbisServiceFacade.java @@ -23,8 +23,8 @@ import java.util.Map; import ch.systemsx.cisd.base.image.IImageTransformerFactory; import ch.systemsx.cisd.common.api.retry.Retry; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java index 3ebe87908e82d084c64c8a27f14f7767aaa3564b..8179526ba36c85333e2ef2d1ebcc72c0d0820cb3 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java @@ -26,8 +26,8 @@ import ch.systemsx.cisd.common.api.MinimalMinorVersion; import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.api.retry.RetryCaller; import ch.systemsx.cisd.common.api.retry.RetryProxyFactory; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.io.ConcatenatedFileOutputStreamWriter; import ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java index ffd17233051ad3f7098343d084bc75c332cb1692..02535c1cb82fc12f3c87f33dee144ce634ebb98e 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java @@ -33,8 +33,8 @@ import org.apache.log4j.Logger; import org.springframework.stereotype.Controller; import org.springframework.web.bind.annotation.RequestMapping; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.string.Template; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/LibraryExtractor.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/LibraryExtractor.java index e9a791dade27ed1682baa67f1d97cc4f493f6bd3..7848aec23fe11387f2ebed23ead39175af26c665 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/LibraryExtractor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/LibraryExtractor.java @@ -7,8 +7,8 @@ import java.io.InputStream; import java.util.Arrays; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileOperations; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.BatchOperationKind; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.EntityType; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/AbstractColumnExtractor.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/AbstractColumnExtractor.java index 3ddec8d3f633faf35cc1165ba134c502a14bface..f075194c329e7f77d0502c7972189b2296a1efd0 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/AbstractColumnExtractor.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/AbstractColumnExtractor.java @@ -24,7 +24,7 @@ import java.util.Map; import java.util.Set; import ch.systemsx.cisd.common.collection.CollectionUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; /** * Provides structured information from one row of the csv file. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/ScreeningLibraryTransformer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/ScreeningLibraryTransformer.java index fc567e59230ba37445ffe34134eefdf2c8bb6d5b..e62ae9e3bcf034f154a17b2cbc1f9d8cf7eaefad 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/ScreeningLibraryTransformer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/library_tools/ScreeningLibraryTransformer.java @@ -24,8 +24,8 @@ import java.io.InputStream; import com.csvreader.CsvReader; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.string.UnicodeUtils; import ch.systemsx.cisd.openbis.generic.shared.util.MaterialConfigurationProvider; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java index 8cfc2ce74bd253c7aa18a2da118e9cd0c2045a03..9750ba7c29127601e4d89e581f8878554e08c857 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java @@ -31,7 +31,7 @@ import org.springframework.stereotype.Component; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.server.AbstractServer; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.AuthorizationGuard; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java index 5bca96d061761576ec847d68578801ebce49a754..7440da4c4ae292b640e857608cb4b467e0637ae4 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java @@ -20,7 +20,7 @@ import java.util.Collection; import java.util.List; import ch.systemsx.cisd.authentication.ISessionManager; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerLogger; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentIdentifierPredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentIdentifierPredicate.java index 6637c9999fe2a32c173c49282773375069109816..2831effe0628953532edc1d9ea1a9c14bbc06933 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentIdentifierPredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentIdentifierPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.server.authorization; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractSpacePredicate; import ch.systemsx.cisd.openbis.generic.shared.dto.ExperimentPE; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentSearchCriteriaPredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentSearchCriteriaPredicate.java index bc80fb474ee704bd670815d51469d54f4cc9b3cb..2d163f805f7b36b864009578af8fe8bfcedb0598 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentSearchCriteriaPredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ExperimentSearchCriteriaPredicate.java @@ -20,8 +20,8 @@ import java.util.List; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.IPredicate; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/MaterialFeaturesOneExpPredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/MaterialFeaturesOneExpPredicate.java index 268ffdd82523c4b2543cc08af95e46cb90a84d7b..d43a90edce2d11caf0b2086e4d19af1c470f0998 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/MaterialFeaturesOneExpPredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/MaterialFeaturesOneExpPredicate.java @@ -20,8 +20,8 @@ import java.util.List; import org.springframework.dao.DataAccessException; -import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.Status; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.IPredicate; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/PlateIdentifierPredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/PlateIdentifierPredicate.java index c0858db2cf42cbd08b294e73e965d6cee8a4e1ef..7995c8947d1dd32e24e0a7d703676a68593171c0 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/PlateIdentifierPredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/PlateIdentifierPredicate.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.server.authorization; import java.util.List; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.IAuthorizationDataProvider; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractSpacePredicate; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ScreeningPlateListReadOnlyPredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ScreeningPlateListReadOnlyPredicate.java index a1470a2918ea75d09f5d9be3737c3cb37c5a155d..6b2099af7a7bfd16f121dbd346b4524cb8639847 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ScreeningPlateListReadOnlyPredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/ScreeningPlateListReadOnlyPredicate.java @@ -26,7 +26,7 @@ import net.lemnik.eodsql.BaseQuery; import net.lemnik.eodsql.QueryTool; import net.lemnik.eodsql.Select; -import ch.systemsx.cisd.common.exception.Status; +import ch.systemsx.cisd.common.exceptions.Status; import ch.systemsx.cisd.openbis.generic.server.authorization.RoleWithIdentifier; import ch.systemsx.cisd.openbis.generic.server.authorization.annotation.ShouldFlattenCollections; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.AbstractSpacePredicate; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/WellSearchCriteriaPredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/WellSearchCriteriaPredicate.java index 11d577037cc1f720d07cfd30cdc3dd87a10f11bf..c9185a46c92cb34e3c44461c668e623121814378 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/WellSearchCriteriaPredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/authorization/WellSearchCriteriaPredicate.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.server.authorization; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.authorization.predicate.DelegatedPredicate; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellSearchCriteria; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellSearchCriteria.ExperimentSearchCriteria; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AbstractContentLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AbstractContentLoader.java index 397201115da1a0c05ab67529190097aa8c8b4e8e..62333474dc055ec614df2cbf059150f39eb541a9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AbstractContentLoader.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AbstractContentLoader.java @@ -24,7 +24,7 @@ import net.lemnik.eodsql.QueryTool; import org.apache.commons.lang.time.StopWatch; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.DatabaseContextUtils; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettings.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettings.java index 510475bb0b8a93bcddf6cafdbe2b1d8331c4d80a..20607e89ada05dcd185d81e8a6a9bfda00a5882c 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettings.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettings.java @@ -20,7 +20,7 @@ import java.util.HashMap; import java.util.Map; import java.util.Properties; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; /** diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoader.java index 41503805d846f2c7246ea49ede97b16f1f7d2e91..24eac1d1f2dee20bb6a02b57fe3f1b51ac709740 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoader.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoader.java @@ -28,7 +28,7 @@ import ch.systemsx.cisd.common.collection.IKeyExtractor; import ch.systemsx.cisd.common.collection.TableMap; import ch.systemsx.cisd.common.collection.CollectionUtils.ICollectionMappingFunction; import ch.systemsx.cisd.common.collection.TableMap.UniqueKeyViolationStrategy; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.IDataSetTable; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java index b186c7e7a720704221b2cf5a1b982319cab71b8f..15906acb7a62dcd96d1ac61121a52ca7d0df4813 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java @@ -25,7 +25,7 @@ import java.util.Map; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.server.business.bo.IDataBO; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateDatasetLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateDatasetLoader.java index c9123691ae67397418e955a7dc9ebdd0a0ebe7d8..89045d36af67c7c4752d65595357a8e449847871 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateDatasetLoader.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateDatasetLoader.java @@ -10,7 +10,7 @@ import java.util.Set; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.datasetlister.IDatasetLister; import ch.systemsx.cisd.openbis.generic.server.business.bo.samplelister.ISampleLister; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataStore; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java index 010d7760d61345b10ab81ab8fb8d0dc0b718b3d5..d3f81de748f1053a8c21a3e254602a9b2f84a084 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java @@ -33,7 +33,7 @@ import net.lemnik.eodsql.QueryTool; import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.business.bo.IDataBO; import ch.systemsx.cisd.openbis.generic.server.business.bo.ISampleBO; import ch.systemsx.cisd.openbis.generic.server.business.bo.common.DatabaseContextUtils; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java index 001a2d8f7631e15bc78597b10bdcd0135f988400..7981b423ccafc83693ab83fc2e862a04bab127ae 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java @@ -20,7 +20,7 @@ import java.util.List; import org.springframework.transaction.annotation.Transactional; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.shared.IServer; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CodeAndLabel; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/FeatureVectorLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/FeatureVectorLoader.java index 3eadf377a973d16e6d9b1d98f82381f5c9827f0e..ccd6d7266c46b006b8cec5a351c9dce044c3b490 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/FeatureVectorLoader.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/FeatureVectorLoader.java @@ -33,7 +33,7 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.collection.IKeyExtractor; import ch.systemsx.cisd.common.collection.TableMap; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CodeAndLabel; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracleTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracleTest.java index 56a12253af9f1f470239558e109491dffa2ef3d8..c54dfad920e04f59eaa9d409deb92580d05ab43a 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracleTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/PlateGeometryOracleTest.java @@ -21,7 +21,7 @@ import java.util.Arrays; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation; /** diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvToCanonicalFeatureVectorTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvToCanonicalFeatureVectorTest.java index 1cf317f405d86936b067d989a90f7249f5e084b3..77f75d0d65b9f81785dbb3ceb286a4b546646c54 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvToCanonicalFeatureVectorTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvToCanonicalFeatureVectorTest.java @@ -32,7 +32,7 @@ import org.testng.annotations.Test; import com.csvreader.CsvReader; import ch.rinn.restrictions.Friend; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.etl.featurevector.CsvFeatureVectorParser.CsvFeatureVectorParserConfiguration; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/jython/FeatureVectorContainerDataSetTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/jython/FeatureVectorContainerDataSetTest.java index 101ace34b5d5573e0ac26ec61e0c12bad204d421..ad86354329499324b0ae667cf8a58030d6954589 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/jython/FeatureVectorContainerDataSetTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/jython/FeatureVectorContainerDataSetTest.java @@ -46,7 +46,7 @@ public class FeatureVectorContainerDataSetTest extends AbstractFileSystemTestCas FeatureVectorContainerDataSet.getContainerAnalysisType(mainType)); } - @Test(expectedExceptions = ch.systemsx.cisd.common.exception.UserFailureException.class) + @Test(expectedExceptions = ch.systemsx.cisd.common.exceptions.UserFailureException.class) public void testGenerateAnalysisContainerTypeFailsWithIncorrectType() { FeatureVectorContainerDataSet.getContainerAnalysisType("HCS_IMAGE_RAW"); diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraphTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraphTest.java index 01804d1caef2e0ed48d441ea75da51c5b86dd5f6..1c5497cf6da757b79f23ff76e9a868f686751fe1 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraphTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraphTest.java @@ -31,7 +31,7 @@ import java.util.List; import com.csvreader.CsvReader; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines; /** diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtilsTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtilsTest.java index 50e3cfa7f48ec0f097b24f2c34e7e79e8a15845f..59837cb8769828d332be3b18f486ceb60e4131d9 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtilsTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/images/ImageChannelsUtilsTest.java @@ -37,7 +37,7 @@ import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.imagereaders.ImageReaderConstants; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java index 96a32830f64ac5e7b837a38e19267bc6bd46ac01..9fbddfbe9a159495b83fd9120f1e2171493e5824 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java @@ -44,8 +44,8 @@ import ch.systemsx.cisd.base.convert.NativeTaggedArray; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; import ch.systemsx.cisd.base.mdarray.MDFloatArray; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.common.io.ByteArrayBasedContentNode; import ch.systemsx.cisd.common.io.ConcatenatedFileOutputStreamWriter; import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/dropbox/JythonScreeningDropboxRecoveryTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/dropbox/JythonScreeningDropboxRecoveryTest.java index 2534cba9231762ff0e7e915801a8f9924993adfa..da29b50ca2c4b809069200292488a6aaed9c25bb 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/dropbox/JythonScreeningDropboxRecoveryTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/dropbox/JythonScreeningDropboxRecoveryTest.java @@ -26,8 +26,8 @@ import org.apache.commons.io.FileUtils; import org.jmock.Expectations; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.EnvironmentFailureException; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileConstants; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.test.RecordingMatcher; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettingsTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettingsTest.java index 39e67e3eb5c0fff06793b7705090a9aa4d8a9712..d83b38efea5158474279e301ae6c7e8529c80918 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettingsTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/AnalysisSettingsTest.java @@ -21,7 +21,7 @@ import java.util.Properties; import org.testng.AssertJUnit; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.ConfigurationFailureException; +import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.builders.DataSetBuilder; /** diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoaderTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoaderTest.java index ccb1f92fd1ce1d0c88c9ec7f757f0683378c364d..833c5db175b07cc14803cf799abbe0e829004f64 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoaderTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ExperimentFeatureVectorSummaryLoaderTest.java @@ -24,7 +24,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.generic.server.dataaccess.IDAOFactory; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerTestCase; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImplTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImplTest.java index 4ef5bc678e7de380c798b396adf4690e8cc8d878..30ef51705d04e0aad8e12d737aac22ac9bd33bc0 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImplTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImplTest.java @@ -30,7 +30,7 @@ import org.jmock.Expectations; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.openbis.generic.shared.AbstractServerTestCase; import ch.systemsx.cisd.openbis.generic.shared.basic.GenericSharedConstants; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/ScreeningServerAuthorizationTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/ScreeningServerAuthorizationTest.java index c0edf3c7aa22a4035a3d30848faf38ed660f324d..d38cb546d10e1789214ddf1a691a556c5e9f189f 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/ScreeningServerAuthorizationTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/ScreeningServerAuthorizationTest.java @@ -22,7 +22,7 @@ import java.util.List; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.exception.AuthorizationFailureException; +import ch.systemsx.cisd.common.exceptions.AuthorizationFailureException; import ch.systemsx.cisd.openbis.generic.server.ICommonServerForInternalUse; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Grantee; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.NewMaterial;