diff --git a/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/managed.py b/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/managed.py index 9e5b5b28f9b718ac0bb6c65fc54a74c497460ec9..edf1c6f70db7c6bd59ef89841f7a268323faf0fe 100644 --- a/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/managed.py +++ b/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/managed.py @@ -35,7 +35,11 @@ configuration["READOUT"] = { "SOLUTION_BUFFERS" : {"QUANTITY" : False, "NAME" : False }, "GENERAL_PROTOCOL" : {"NAME" : False } }; - + +configuration["READOUT"] = { + "ANNOTATIONS" : {"QUANTITY" : False, "NAME" : False, "DETAIL" : False } + }; + #Global Variables annotableType = "<REPLACE_WITH_ANNOTABLE_TYPE>" server = CommonServiceProvider.getCommonServer() diff --git a/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/migration.py b/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/migration.py index 9d1030ca802ba46df70e679f0197ec76e2099c65..67576998d2ef8bff930de379ce59cdaaf713d82d 100644 --- a/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/migration.py +++ b/plasmid/source/core-plugins/stellingmigration/1/dss/drop-boxes/stellingmigration/migration.py @@ -9,60 +9,60 @@ import xml.etree.ElementTree as ET ## definitions = { -# "GENERAL_PROTOCOL" : -# { -# "CHEMICALS" : { -# "quantity" : "QUANTITY", -# "name" : "NAME" -# }, -# "SOLUTIONS_BUFFERS" : { -# "quantity" : "QUANTITY", -# "name" : "NAME" -# }, -# "MEDIA" : { -# "quantity" : "QUANTITY", -# "name" : "NAME" -# }, -# "GENERAL_PROTOCOL" : { -# "name" : "NAME" -# } -# }, -# "MEDIA" : -# { -# "CHEMICALS" : { -# "concentration" : "QUANTITY", -# "name" : "NAME" -# }, -# "SOLUTIONS_BUFFERS" : { -# "concentration" : "QUANTITY", -# "name" : "NAME" -# }, -# "MEDIA" : { -# "concentration" : "QUANTITY", -# "name" : "NAME" -# } -# }, -# "PCR" : -# { -# "CHEMICALS" : { -# "quantity" : "QUANTITY", -# "name" : "NAME" -# }, -# "SOLUTIONS_BUFFERS" : { -# "quantity" : "QUANTITY", -# "name" : "NAME" -# }, -# "ENZYMES" : { -# "name" : "NAME" -# } -# }, -# "POMBE" : -# { -# "PLASMIDS" : { -# "rel" : "RELATIONSHIP", -# "annotation" : "ANNOTATION" -# } -# }, + "GENERAL_PROTOCOL" : + { + "CHEMICALS" : { + "quantity" : "QUANTITY", + "name" : "NAME" + }, + "SOLUTIONS_BUFFERS" : { + "quantity" : "QUANTITY", + "name" : "NAME" + }, + "MEDIA" : { + "quantity" : "QUANTITY", + "name" : "NAME" + }, + "GENERAL_PROTOCOL" : { + "name" : "NAME" + } + }, + "MEDIA" : + { + "CHEMICALS" : { + "concentration" : "QUANTITY", + "name" : "NAME" + }, + "SOLUTIONS_BUFFERS" : { + "concentration" : "QUANTITY", + "name" : "NAME" + }, + "MEDIA" : { + "concentration" : "QUANTITY", + "name" : "NAME" + } + }, + "PCR" : + { + "CHEMICALS" : { + "quantity" : "QUANTITY", + "name" : "NAME" + }, + "SOLUTIONS_BUFFERS" : { + "quantity" : "QUANTITY", + "name" : "NAME" + }, + "ENZYMES" : { + "name" : "NAME" + } + }, + "POMBE" : + { + "PLASMIDS" : { + "rel" : "RELATIONSHIP", + "annotation" : "ANNOTATION" + } + }, "READOUT" : { "CHEMICALS" : { @@ -76,6 +76,14 @@ definitions = { "GENERAL_PROTOCOL" : { "name" : "NAME" } + }, + "RESULT" : + { + "ANNOTATIONS" : { + "quantity" : "QUANTITY", + "name" : "NAME", + "detail" : "DETAIL" + } } };