From f5c8a30d6bc60f1637b22314685dd095aa6f48ec Mon Sep 17 00:00:00 2001
From: kaloyane <kaloyane>
Date: Wed, 11 May 2011 12:35:06 +0000
Subject: [PATCH] minor: add default jython dropbox for installer
SVN: 21236
---
.../installer/dropboxes/simple-dropbox.py | 30 +++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/screening/dist/installer/dropboxes/simple-dropbox.py b/screening/dist/installer/dropboxes/simple-dropbox.py
index e69de29bb2d..be28a70d26a 100644
--- a/screening/dist/installer/dropboxes/simple-dropbox.py
+++ b/screening/dist/installer/dropboxes/simple-dropbox.py
@@ -0,0 +1,30 @@
+#! /usr/bin/env python
+# This is an example Jython dropbox for importing HCS image datasets
+
+import os
+from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import *
+
+class MyImageDataSetConfig(SimpleImageDataConfig):
+ def extractImageMetadata(self, imagePath):
+ image_tokens = ImageMetadata()
+
+ basename = os.path.splitext(imagePath)[0]
+ token_dict = {}
+ for token in basename.split("_"):
+ token_dict[token[:1]] = token[1:]
+
+ image_tokens.well = token_dict["w"]
+ fieldText = token_dict["s"]
+ try:
+ image_tokens.tileNumber = int(fieldText)
+ except ValueError:
+ raise Exception("Cannot parse field number from '" + fieldText + "' in '" + basename + "' file name.")
+
+ image_tokens.channelCode = token_dict["c"]
+ return image_tokens
+
+if incoming.isDirectory():
+ imageDataset = MyImageDataSetConfig()
+ imageDataset.setRawImageDatasetType()
+ imageDataset.setPlate("MY-SPACE", incoming.getName())
+ factory.registerImageDataset(imageDataset, incoming, service)
--
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