diff --git a/deep_sequencing_unit/source/bash/cif2txt.sh b/deep_sequencing_unit/source/bash/cif2txt.sh index b263836235749ab66e59e2b75a1936ff09ee5bc0..c9c114c7d5fb69c4d2d570a8eaa95ae2404655bd 100755 --- a/deep_sequencing_unit/source/bash/cif2txt.sh +++ b/deep_sequencing_unit/source/bash/cif2txt.sh @@ -23,10 +23,9 @@ INTENSITY_FOLDER=$1 CYCLES=$2 NUMBER_OF_TILES=$3 NUMBER_OF_LANES=8 -NUMBER_OF_TILES=120 #INT_NSE_DIR=$1/int_nse PRG=`basename $0` -USAGE="Usage: ${PRG} <Path_to_Intensity_Folder> <Number_of_Cycles> \n\nEXAMPLE: ${PRG} /array0/Runs/090720_42HUDAAXX/Data/Intensities/ 38 120" +USAGE="Usage: ${PRG} <Path_to_Intensity_Folder> <Number_of_Cycles> <Number_of_Tiles>\n\nEXAMPLE: ${PRG} /array0/Runs/090720_42HUDAAXX/Data/Intensities/ 38 120" if [ -z "${INTENSITY_FOLDER}" -o -z "${CYCLES}" -o -z "${NUMBER_OF_TILES}" ] then @@ -48,4 +47,5 @@ for (( t = 1; t <= $NUMBER_OF_TILES; t++ )); do done # wait for the processes to end after calling 8 Lanes wait $! + sleep 3 done \ No newline at end of file