From f0568f45220247102db5b7d784fe64a1e1cfb9b1 Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Mon, 16 Mar 2015 08:29:56 +0000
Subject: [PATCH] SSDM-1596: FastaUtilities.determineSequenceType() will ignore
characters which are not valid codes.
SVN: 33646
---
.../java/ch/systemsx/cisd/common/fasta/FastaUtilities.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/common/source/java/ch/systemsx/cisd/common/fasta/FastaUtilities.java b/common/source/java/ch/systemsx/cisd/common/fasta/FastaUtilities.java
index 6d79e381033..99faa80f4a5 100644
--- a/common/source/java/ch/systemsx/cisd/common/fasta/FastaUtilities.java
+++ b/common/source/java/ch/systemsx/cisd/common/fasta/FastaUtilities.java
@@ -61,7 +61,7 @@ public class FastaUtilities
boolean isAmoniAcidCode = AMINO_ACID_CODES_SET.contains(c);
if (isNucleicAcidCode == false && isAmoniAcidCode == false)
{
- throw new IllegalArgumentException("Invalid symbol '" + c + "' in line '" + line + "'.");
+ continue;
}
if (isNucleicAcidCode == false)
{
--
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