From ee518dda107a0088a1501778f929bb77ab8a4a4c Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Thu, 14 Mar 2013 11:47:52 +0000
Subject: [PATCH] add menu item 'Counts Feature Vectors'.
SVN: 28612
---
.../api/v1/ScreeningClientApiTester.java | 38 ++++++++++++++++++-
1 file changed, 37 insertions(+), 1 deletion(-)
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningClientApiTester.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningClientApiTester.java
index a8bc1ecf8d0..39ae2bc03d2 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningClientApiTester.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningClientApiTester.java
@@ -54,10 +54,14 @@ import javax.swing.text.JTextComponent;
import org.apache.log4j.PropertyConfigurator;
+import ch.systemsx.cisd.common.ssl.SslCertificateHelper;
import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss;
import ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter;
import ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade.IImageOutputStreamProvider;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ExperimentIdentifier;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVector;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDataset;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageSize;
@@ -190,6 +194,16 @@ public class ScreeningClientApiTester
listPlates();
}
});
+ JMenuItem listFeatureVectorsMenuItem = new JMenuItem("Counts Feature Vectors");
+ callApiMenu.add(listFeatureVectorsMenuItem);
+ listFeatureVectorsMenuItem.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ loadFeatureVectors();
+ }
+ });
}
void setUp(String[] args)
@@ -197,9 +211,11 @@ public class ScreeningClientApiTester
setVisible(true);
if (args.length == 3)
{
+ String serverUrl = args[2];
+ SslCertificateHelper.trustAnyCertificate(serverUrl);
facade =
ScreeningOpenbisServiceFacadeFactory.INSTANCE.tryToCreate(args[0], args[1],
- args[2]);
+ serverUrl);
} else
{
Form form = new Form(this, "Connection to openBIS");
@@ -320,6 +336,26 @@ public class ScreeningClientApiTester
JOptionPane.showMessageDialog(this, "Plates: " + plates);
}
+ private void loadFeatureVectors()
+ {
+ List<Plate> plates = facade.listPlates();
+ List<FeatureVectorDatasetReference> featureDatasets = facade.listFeatureVectorDatasets(plates);
+ long t0 = System.currentTimeMillis();
+ List<FeatureVectorDataset> features = facade.loadFeatures(featureDatasets, null);
+ long duration = System.currentTimeMillis() - t0;
+ int featureVectors = 0;
+ int featureColumns = 0;
+ for (FeatureVectorDataset featureVectorDataSet : features)
+ {
+ List<FeatureVector> featureVector = featureVectorDataSet.getFeatureVectors();
+ featureColumns += featureVectorDataSet.getFeatureCodes().size();
+ featureVectors += featureVector.size();
+ }
+ JOptionPane.showMessageDialog(this, plates.size() + " Plates\n" + features.size()
+ + " Feature Data Sets\n" + featureVectors + " Feature Vectors\n"
+ + featureColumns + " Features\ntook " + duration + " msec");
+ }
+
private void loadImagesByDataSetCode()
{
Form form = new Form(this, "Parameters for Loading Images by Data Set");
--
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