From e65a0f24b32985037ce70ae71e0437f16e80f9fc Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Thu, 29 Apr 2010 10:26:15 +0000
Subject: [PATCH] LMS-1445 first check in
SVN: 15674
---
openbis_knime/.classpath | 10 ++
openbis_knime/.gitignore | 0
openbis_knime/.project | 17 +++
openbis_knime/build/build.xml | 108 +++++++++++++++++
openbis_knime/dist/META-INF/MANIFEST.MF | 15 +++
openbis_knime/dist/icons/openbis.png | Bin 0 -> 707 bytes
openbis_knime/dist/plugin.properties | 1 +
openbis_knime/dist/plugin.xml | 14 +++
.../cisd/openbis/knime/TestNodeDialog.java | 111 +++++++++++++++++
.../cisd/openbis/knime/TestNodeFactory.java | 61 ++++++++++
.../cisd/openbis/knime/TestNodeFactory.xml | 26 ++++
.../cisd/openbis/knime/TestNodeModel.java | 113 ++++++++++++++++++
.../systemsx/cisd/openbis/knime/openbis.png | Bin 0 -> 707 bytes
13 files changed, 476 insertions(+)
create mode 100644 openbis_knime/.classpath
delete mode 100644 openbis_knime/.gitignore
create mode 100644 openbis_knime/.project
create mode 100644 openbis_knime/build/build.xml
create mode 100755 openbis_knime/dist/META-INF/MANIFEST.MF
create mode 100644 openbis_knime/dist/icons/openbis.png
create mode 100644 openbis_knime/dist/plugin.properties
create mode 100644 openbis_knime/dist/plugin.xml
create mode 100644 openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeDialog.java
create mode 100644 openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.java
create mode 100644 openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.xml
create mode 100644 openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeModel.java
create mode 100644 openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/openbis.png
diff --git a/openbis_knime/.classpath b/openbis_knime/.classpath
new file mode 100644
index 00000000000..8e08285d5bf
--- /dev/null
+++ b/openbis_knime/.classpath
@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry kind="src" path="source/java"/>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/J2SE-1.5"/>
+ <classpathentry kind="lib" path="/libraries/knime/knime-base.jar"/>
+ <classpathentry kind="lib" path="/libraries/knime/knime-core.jar"/>
+ <classpathentry kind="lib" path="/libraries/openbis-apis/query/openbis-query-api.jar"/>
+ <classpathentry kind="lib" path="/libraries/log4j/log4j.jar" sourcepath="/libraries/log4j/src.zip"/>
+ <classpathentry kind="output" path="targets/classes"/>
+</classpath>
diff --git a/openbis_knime/.gitignore b/openbis_knime/.gitignore
deleted file mode 100644
index e69de29bb2d..00000000000
diff --git a/openbis_knime/.project b/openbis_knime/.project
new file mode 100644
index 00000000000..9ef2c13b77e
--- /dev/null
+++ b/openbis_knime/.project
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+ <name>openbis_knime</name>
+ <comment></comment>
+ <projects>
+ </projects>
+ <buildSpec>
+ <buildCommand>
+ <name>org.eclipse.jdt.core.javabuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ </buildSpec>
+ <natures>
+ <nature>org.eclipse.jdt.core.javanature</nature>
+ </natures>
+</projectDescription>
diff --git a/openbis_knime/build/build.xml b/openbis_knime/build/build.xml
new file mode 100644
index 00000000000..d1c06b489b1
--- /dev/null
+++ b/openbis_knime/build/build.xml
@@ -0,0 +1,108 @@
+<project name="openbis_knime" basedir="..">
+ <import file="../../build_resources/ant/build-common.xml" />
+ <project-classpath name="ecp" classes="${classes}" />
+ <property name="mainfolder" value="openbis_knime"/>
+ <property name="version" value="0.1.0"/>
+ <property name="jar.file.name" value="openbis-knime.jar"/>
+ <property name="jar.file" value="${dist}/${jar.file.name}"/>
+ <property name="original.dist" value="../${ant.project.name}/dist" />
+
+
+ <!--
+ // Cleans distribution directory.
+ -->
+ <target name="clean" description="Cleans distribution directory.">
+ <delete dir="${dist}" failonerror="true" />
+ <mkdir dir="${dist}" />
+ </target>
+
+ <!--
+ // Runs tests.
+ -->
+ <target name="run-tests">
+ <antcall target="build-common.run-tests">
+ <param name="test.suite" value="tests.xml" />
+ </antcall>
+ </target>
+
+ <!--
+ // Creates build information.
+ -->
+ <target name="build-info" description="Creates build information.">
+ <!--build-info revision="revision.number" version="version.number" clean="clean.flag" />
+ <echo file="${build.info.file}">${version.number}:${revision.number}:${clean.flag}</echo-->
+ <echo file="${build.info.file}">abc:123:d</echo>
+ </target>
+
+ <!--
+ // Creates JAR file.
+ -->
+ <target name="jar" depends="compile, build-info" description="Creates project jar file.">
+ <delete file="${jar.file}" />
+ <recursive-jar destfile="${jar.file}">
+ <fileset dir="${classes}">
+ <include name="**/*.class" />
+ <include name="${build.info.filename}" />
+ </fileset>
+ <fileset dir="${sources}">
+ <include name="**/*.xml" />
+ <include name="**/*.png" />
+ </fileset>
+ </recursive-jar>
+ </target>
+
+ <!--
+ // Makes a distribution file.
+ -->
+ <target name="dist" description="Makes a distribution file." depends="clean, jar">
+
+ <!--property name="dist.file.name" value="ch.systemsx.cisd.openbis.knime-${version}.v${version.number}-r${revision.number}.zip" /-->
+ <property name="dist.file.name" value="${dist}/ch.systemsx.cisd.openbis.knime-${version}.jar" />
+
+ <jar destfile="${dist.file.name}" manifest="${original.dist}/META-INF/MANIFEST.MF">
+ <fileset dir="${dist}">
+ <include name="${jar.file.name}"/>
+ </fileset>
+ <fileset dir="${original.dist}">
+ <include name="**/*"/>
+ </fileset>
+ <zipfileset prefix="lib" file="${lib}/openbis-apis/query/openbis-query-api.jar"/>
+ <zipfileset prefix="lib" file="${lib}/cisd-base/cisd-base.jar"/>
+ <zipfileset prefix="lib" file="${lib}/commons-codec/commons-codec.jar"/>
+ <zipfileset prefix="lib" file="${lib}/commons-httpclient/commons-httpclient.jar"/>
+ <zipfileset prefix="lib" file="${lib}/commons-logging/commons-logging.jar"/>
+ <zipfileset prefix="lib" file="${lib}/log4j/log4j.jar"/>
+ <zipfileset prefix="lib" file="${lib}/spring/spring.jar"/>
+ <zipfileset prefix="lib" file="${lib}/spring/third-party/stream-supporting-httpinvoker.jar"/>
+ </jar>
+ <delete file="${jar.file}"/>
+ </target>
+
+ <!--
+ // Task for continuous integration server.
+ -->
+ <target name="ci" depends="build-common.ci, check-dependencies, dist"
+ description="Task for continuous integration server." />
+
+ <!--
+ // Compiles the javascript using GWT compiler.
+ -->
+ <target name="compile-javascript" description="Compiles the javascript using GWT compiler.">
+ <property name="application.gwt.path" value="ch.systemsx.cisd.datamover.console.DatamoverConsole" />
+ <echo></echo>
+ <delete dir="${webapp.dist}" />
+ <java classpath="${ecp}:${gwt.dev.lib}:${gwt.user.lib}:${sources}"
+ classname="com.google.gwt.dev.GWTCompiler"
+ fork="true">
+ <jvmarg value="-Xmx512M" />
+ <arg value="-out" />
+ <arg value="${webapp.dist}" />
+ <arg value="${application.gwt.path}" />
+ </java>
+ <move todir="${webapp.dist}">
+ <fileset dir="${webapp.dist}/${application.gwt.path}" />
+ </move>
+ </target>
+
+
+</project>
\ No newline at end of file
diff --git a/openbis_knime/dist/META-INF/MANIFEST.MF b/openbis_knime/dist/META-INF/MANIFEST.MF
new file mode 100755
index 00000000000..9fc60748ee5
--- /dev/null
+++ b/openbis_knime/dist/META-INF/MANIFEST.MF
@@ -0,0 +1,15 @@
+Manifest-Version: 1.0
+Bundle-ManifestVersion: 2
+Bundle-Name: openBIS nodes
+Bundle-SymbolicName: ch.systemsx.cisd.openbis.knime; singleton:=true
+Bundle-Version: 0.1.0
+Bundle-ClassPath: openbis-knime.jar,lib/cisd-base.jar,lib/commons-codec.jar,
+ lib/commons-httpclient.jar,lib/commons-logging.jar,lib/log4j.jar,lib/openbis-query-api.jar,
+ lib/spring.jar,lib/stream-supporting-httpinvoker.jar
+Bundle-Vendor: CISD
+Bundle-Localization: plugin
+Require-Bundle: org.eclipse.core.runtime,org.knime.workbench.core,
+ org.knime.workbench.repository,org.knime.base
+Eclipse-RegisterBuddy: org.knime.base
+Export-Package: ch.systemsx.cisd.openbis.knime
+Bundle-ActivationPolicy: lazy
diff --git a/openbis_knime/dist/icons/openbis.png b/openbis_knime/dist/icons/openbis.png
new file mode 100644
index 0000000000000000000000000000000000000000..a5b30672e374063ad0b36c4469a028e9e61090d7
GIT binary patch
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literal 0
HcmV?d00001
diff --git a/openbis_knime/dist/plugin.properties b/openbis_knime/dist/plugin.properties
new file mode 100644
index 00000000000..93a2dde057f
--- /dev/null
+++ b/openbis_knime/dist/plugin.properties
@@ -0,0 +1 @@
+% plugin properties for "openBIS"
\ No newline at end of file
diff --git a/openbis_knime/dist/plugin.xml b/openbis_knime/dist/plugin.xml
new file mode 100644
index 00000000000..c2ef9769295
--- /dev/null
+++ b/openbis_knime/dist/plugin.xml
@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<?eclipse version="3.0"?>
+
+<plugin>
+ <extension point="org.knime.workbench.repository.nodes">
+ <node category-path="/openbis" factory-class="ch.systemsx.cisd.openbis.knime.TestNodeFactory"
+ id="ch.systemsx.cisd.openbis.knime.node"/>
+ </extension>
+
+ <extension point="org.knime.workbench.repository.categories">
+ <category icon="icons/openbis.png" level-id="openbis" name="openBIS" path="/"/>
+ </extension>
+
+</plugin>
\ No newline at end of file
diff --git a/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeDialog.java b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeDialog.java
new file mode 100644
index 00000000000..f06e6eeb620
--- /dev/null
+++ b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeDialog.java
@@ -0,0 +1,111 @@
+/*
+ * Copyright 2010 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.systemsx.cisd.openbis.knime;
+
+import java.awt.BorderLayout;
+import java.awt.GridLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.List;
+
+import javax.swing.JButton;
+import javax.swing.JComboBox;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JPasswordField;
+import javax.swing.JTextField;
+
+import org.apache.log4j.Logger;
+import org.knime.core.node.InvalidSettingsException;
+import org.knime.core.node.NodeDialogPane;
+import org.knime.core.node.NodeSettingsRO;
+import org.knime.core.node.NodeSettingsWO;
+import org.knime.core.node.NotConfigurableException;
+import org.knime.core.node.port.PortObjectSpec;
+
+import ch.systemsx.cisd.openbis.plugin.query.client.api.v1.QueryApiFacade;
+import ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription;
+
+/**
+ *
+ *
+ * @author Franz-Josef Elmer
+ */
+public class TestNodeDialog extends NodeDialogPane
+{
+ private JTextField urlField;
+ private JTextField userField;
+ private JPasswordField passwordField;
+ private JComboBox queryComboBox;
+
+ TestNodeDialog()
+ {
+ super();
+ addTab("openBIS Settings", createGUI());
+ }
+
+ private JPanel createGUI()
+ {
+ JPanel panel = new JPanel(new BorderLayout());
+ JPanel form = new JPanel(new GridLayout(0, 2));
+ form.add(new JLabel("openBIS URL:"));
+ urlField = new JTextField();
+ form.add(urlField);
+ form.add(new JLabel("User:"));
+ userField = new JTextField();
+ form.add(userField);
+ form.add(new JLabel("Password:"));
+ passwordField = new JPasswordField();
+ form.add(passwordField);
+ form.add(new JLabel("Queries:"));
+ queryComboBox = new JComboBox();
+ form.add(queryComboBox);
+ panel.add(form, BorderLayout.NORTH);
+ JButton button = new JButton("connect");
+ button.addActionListener(new ActionListener()
+ {
+
+ public void actionPerformed(ActionEvent e)
+ {
+ QueryApiFacade facade = QueryApiFacade.create(urlField.getText(), userField.getText(), passwordField.getText());
+ List<QueryDescription> queries = facade.listQueries();
+ for (QueryDescription queryDescription : queries)
+ {
+ queryComboBox.addItem(queryDescription.getName());
+ }
+ // TODO Auto-generated method stub
+
+ }
+ });
+ panel.add(button, BorderLayout.SOUTH);
+ return panel;
+ }
+
+ @Override
+ protected void loadSettingsFrom(NodeSettingsRO settings, PortObjectSpec[] specs)
+ throws NotConfigurableException
+ {
+ }
+
+ @Override
+ protected void saveSettingsTo(NodeSettingsWO settings) throws InvalidSettingsException
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+}
diff --git a/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.java b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.java
new file mode 100644
index 00000000000..daa77002197
--- /dev/null
+++ b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.java
@@ -0,0 +1,61 @@
+/*
+ * Copyright 2010 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.systemsx.cisd.openbis.knime;
+
+import org.knime.core.node.NodeDialogPane;
+import org.knime.core.node.NodeFactory;
+import org.knime.core.node.NodeView;
+
+/**
+ *
+ *
+ * @author Franz-Josef Elmer
+ */
+public class TestNodeFactory extends NodeFactory<TestNodeModel>
+{
+
+ @Override
+ protected NodeDialogPane createNodeDialogPane()
+ {
+ return new TestNodeDialog();
+ }
+
+ @Override
+ public TestNodeModel createNodeModel()
+ {
+ return new TestNodeModel();
+ }
+
+ @Override
+ public NodeView<TestNodeModel> createNodeView(int arg0, TestNodeModel arg1)
+ {
+ return null;
+ }
+
+ @Override
+ protected int getNrNodeViews()
+ {
+ return 0;
+ }
+
+ @Override
+ protected boolean hasDialog()
+ {
+ return true;
+ }
+
+}
diff --git a/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.xml b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.xml
new file mode 100644
index 00000000000..8128aed79d1
--- /dev/null
+++ b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeFactory.xml
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE knimeNode PUBLIC "-//UNIKN//DTD KNIME Node 2.0//EN" "http://www.knime.org/Node.dtd">
+<knimeNode icon="./openbis.png" type="Source">
+ <name>openBIS Test</name>
+
+ <shortDescription>
+ openBIS test node
+ </shortDescription>
+
+ <fullDescription>
+ <intro>Just testing a very simple node.
+ </intro>
+
+
+ <option name="short name of first option (like in the dialog)">has no first option</option>
+ <option name="short name of second option (like in the dialog)">has no second option</option>
+ </fullDescription>
+
+ <ports>
+ <inPort index="0" name="First In Port">Actual there are no in ports I guess</inPort>
+ <outPort index="0" name="First out Port">A simple table</outPort>
+ </ports>
+ <views>
+ <view index="0" name="name of first view">Description of first view...</view>
+ </views>
+</knimeNode>
diff --git a/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeModel.java b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeModel.java
new file mode 100644
index 00000000000..ba1e739538a
--- /dev/null
+++ b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/TestNodeModel.java
@@ -0,0 +1,113 @@
+/*
+ * Copyright 2010 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.systemsx.cisd.openbis.knime;
+
+import java.io.File;
+import java.io.IOException;
+
+import org.knime.core.data.DataTableSpec;
+import org.knime.core.data.DataType;
+import org.knime.core.data.def.DefaultRow;
+import org.knime.core.data.def.StringCell;
+import org.knime.core.node.BufferedDataContainer;
+import org.knime.core.node.BufferedDataTable;
+import org.knime.core.node.CanceledExecutionException;
+import org.knime.core.node.ExecutionContext;
+import org.knime.core.node.ExecutionMonitor;
+import org.knime.core.node.InvalidSettingsException;
+import org.knime.core.node.NodeModel;
+import org.knime.core.node.NodeSettingsRO;
+import org.knime.core.node.NodeSettingsWO;
+
+/**
+ *
+ *
+ * @author Franz-Josef Elmer
+ */
+public class TestNodeModel extends NodeModel
+{
+
+ protected TestNodeModel()
+ {
+ super(0, 1);
+ }
+
+ @Override
+ protected void loadInternals(File arg0, ExecutionMonitor arg1) throws IOException,
+ CanceledExecutionException
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void loadValidatedSettingsFrom(NodeSettingsRO arg0) throws InvalidSettingsException
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void reset()
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void saveInternals(File arg0, ExecutionMonitor arg1) throws IOException,
+ CanceledExecutionException
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void saveSettingsTo(NodeSettingsWO arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected void validateSettings(NodeSettingsRO arg0) throws InvalidSettingsException
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ protected BufferedDataTable[] execute(BufferedDataTable[] inData, ExecutionContext exec)
+ throws Exception
+ {
+ BufferedDataContainer container = exec.createDataContainer(new DataTableSpec(new String[] {"col1", "col2"},
+ new DataType[] {StringCell.TYPE, StringCell.TYPE}));
+ for (int i = 0; i < 5; i++)
+ {
+ container.addRowToTable(new DefaultRow("row-"+i, "a-"+i, "b-"+i));
+ }
+ container.close();
+ return new BufferedDataTable[] {container.getTable()};
+ }
+
+ @Override
+ protected DataTableSpec[] configure(final DataTableSpec[] inSpecs)
+ throws InvalidSettingsException
+ {
+ return new DataTableSpec[0];
+ }
+}
diff --git a/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/openbis.png b/openbis_knime/source/java/ch/systemsx/cisd/openbis/knime/openbis.png
new file mode 100644
index 0000000000000000000000000000000000000000..a5b30672e374063ad0b36c4469a028e9e61090d7
GIT binary patch
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--
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