diff --git a/js-test/servers/common/core-plugins/core-plugins.properties b/js-test/servers/common/core-plugins/core-plugins.properties new file mode 100644 index 0000000000000000000000000000000000000000..d72e0524c10da79ef531517fc2f3a64fb5b33d85 --- /dev/null +++ b/js-test/servers/common/core-plugins/core-plugins.properties @@ -0,0 +1,2 @@ + +enabled-modules = proteomics, screening, illumina-ngs, tests, tests-data-import diff --git a/js-test/servers/common/core-plugins/default/default-validation-script.py b/js-test/servers/common/core-plugins/default/default-validation-script.py new file mode 100644 index 0000000000000000000000000000000000000000..093730f0c04f6234f52bb90379ccdd6e5d814d13 --- /dev/null +++ b/js-test/servers/common/core-plugins/default/default-validation-script.py @@ -0,0 +1,2 @@ +def validate_data_set_file(file): + pass diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/as/initialize-master-data.py b/js-test/servers/common/core-plugins/illumina-ngs/1/as/initialize-master-data.py new file mode 100644 index 0000000000000000000000000000000000000000..f0c068189812377cc5a07227bb020664aa02eda5 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/as/initialize-master-data.py @@ -0,0 +1,3399 @@ +# -*- coding: utf-8 -*- +import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType + +tr = service.transaction() + + +file_type_FASTQ_PHRED_64 = tr.getOrCreateNewFileFormatType('FASTQ_PHRED_64') +file_type_FASTQ_PHRED_64.setDescription('FastQ Format with PHRED+64 quality values (as deliverd by Illumina GA Pipeline >= 1.3)') + +vocabulary_AGILENT_KIT = tr.getOrCreateNewVocabulary('AGILENT_KIT') +vocabulary_AGILENT_KIT.setDescription(None) +vocabulary_AGILENT_KIT.setUrlTemplate(None) +vocabulary_AGILENT_KIT.setManagedInternally(False) +vocabulary_AGILENT_KIT.setInternalNamespace(False) +vocabulary_AGILENT_KIT.setChosenFromList(True) + +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000 = tr.createNewVocabularyTerm('AGILENT_DNA_KIT_1000') +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setDescription(None) +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setLabel(None) +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setOrdinal(1) +vocabulary_AGILENT_KIT.addTerm(vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000) + +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT = tr.createNewVocabularyTerm('AGILENT_HIGH_SENSITIVITY_DNA_KIT') +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setDescription(None) +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setLabel(None) +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setOrdinal(2) +vocabulary_AGILENT_KIT.addTerm(vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT) + +vocabulary_ALIGNMENT_SOFTWARE = tr.getOrCreateNewVocabulary('ALIGNMENT_SOFTWARE') +vocabulary_ALIGNMENT_SOFTWARE.setDescription('If an alignment is requested, which software package should be use?') +vocabulary_ALIGNMENT_SOFTWARE.setUrlTemplate(None) +vocabulary_ALIGNMENT_SOFTWARE.setManagedInternally(False) +vocabulary_ALIGNMENT_SOFTWARE.setInternalNamespace(False) +vocabulary_ALIGNMENT_SOFTWARE.setChosenFromList(True) + +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED = tr.createNewVocabularyTerm('NOT_NEEDED') +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setOrdinal(1) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED) + +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND = tr.createNewVocabularyTerm('ELAND') +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setOrdinal(2) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_ELAND) + +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ = tr.createNewVocabularyTerm('MAQ') +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setOrdinal(3) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_MAQ) + +vocabulary_term_ALIGNMENT_SOFTWARE_BWA = tr.createNewVocabularyTerm('BWA') +vocabulary_term_ALIGNMENT_SOFTWARE_BWA.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BWA.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BWA.setOrdinal(4) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_BWA) + +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN = tr.createNewVocabularyTerm('NOVOALIGN') +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setOrdinal(6) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN) + +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE = tr.createNewVocabularyTerm('BOWTIE') +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setOrdinal(7) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE) + +vocabulary_CASAVA_VERSION = tr.getOrCreateNewVocabulary('CASAVA_VERSION') +vocabulary_CASAVA_VERSION.setDescription('Post analyzing software') +vocabulary_CASAVA_VERSION.setUrlTemplate(None) +vocabulary_CASAVA_VERSION.setManagedInternally(False) +vocabulary_CASAVA_VERSION.setInternalNamespace(False) +vocabulary_CASAVA_VERSION.setChosenFromList(True) + +vocabulary_term_CASAVA_VERSION_18 = tr.createNewVocabularyTerm('1.8') +vocabulary_term_CASAVA_VERSION_18.setDescription(None) +vocabulary_term_CASAVA_VERSION_18.setLabel(None) +vocabulary_term_CASAVA_VERSION_18.setOrdinal(1) +vocabulary_CASAVA_VERSION.addTerm(vocabulary_term_CASAVA_VERSION_18) + +vocabulary_term_CASAVA_VERSION_17 = tr.createNewVocabularyTerm('1.7') +vocabulary_term_CASAVA_VERSION_17.setDescription(None) +vocabulary_term_CASAVA_VERSION_17.setLabel(None) +vocabulary_term_CASAVA_VERSION_17.setOrdinal(2) +vocabulary_CASAVA_VERSION.addTerm(vocabulary_term_CASAVA_VERSION_17) + +vocabulary_CLUSTER_GENERATION_KIT_VERSION = tr.getOrCreateNewVocabulary('CLUSTER_GENERATION_KIT_VERSION') +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setDescription('Version of the Cluster Generation Kit') +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setUrlTemplate(None) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setManagedInternally(False) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setInternalNamespace(False) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setChosenFromList(True) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_HS_V3') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setLabel('TruSeq cBot-HS v3') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setOrdinal(1) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_HS_V2.5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setLabel('TruSeq cBot-HS v2.5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setOrdinal(2) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_GA_V2') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setLabel('TrueSeq cBot-GA v2') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setOrdinal(3) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5 = tr.createNewVocabularyTerm('TRUSEQ_CS_GA_V5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setLabel('TrueSeq CS-GA v5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setOrdinal(4) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5 = tr.createNewVocabularyTerm('V5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setLabel(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setOrdinal(5) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4 = tr.createNewVocabularyTerm('V4') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setLabel(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setOrdinal(6) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2 = tr.createNewVocabularyTerm('V2') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setLabel(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setOrdinal(7) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2) + +vocabulary_CLUSTER_STATION = tr.getOrCreateNewVocabulary('CLUSTER_STATION') +vocabulary_CLUSTER_STATION.setDescription('Cluster Station') +vocabulary_CLUSTER_STATION.setUrlTemplate(None) +vocabulary_CLUSTER_STATION.setManagedInternally(False) +vocabulary_CLUSTER_STATION.setInternalNamespace(False) +vocabulary_CLUSTER_STATION.setChosenFromList(True) + +vocabulary_term_CLUSTER_STATION_CBOT = tr.createNewVocabularyTerm('CBOT') +vocabulary_term_CLUSTER_STATION_CBOT.setDescription(None) +vocabulary_term_CLUSTER_STATION_CBOT.setLabel('cBot') +vocabulary_term_CLUSTER_STATION_CBOT.setOrdinal(1) +vocabulary_CLUSTER_STATION.addTerm(vocabulary_term_CLUSTER_STATION_CBOT) + +vocabulary_term_CLUSTER_STATION_CBOT2 = tr.createNewVocabularyTerm('CBOT2') +vocabulary_term_CLUSTER_STATION_CBOT2.setDescription('Second cBot') +vocabulary_term_CLUSTER_STATION_CBOT2.setLabel('cBot2') +vocabulary_term_CLUSTER_STATION_CBOT2.setOrdinal(2) +vocabulary_CLUSTER_STATION.addTerm(vocabulary_term_CLUSTER_STATION_CBOT2) + +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION = tr.getOrCreateNewVocabulary('CLUSTER_STATION_SOFTWARE_VERSION') +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.setDescription(None) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.setUrlTemplate(None) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.setManagedInternally(False) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.setInternalNamespace(False) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.setChosenFromList(True) + +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_CBOT_14360 = tr.createNewVocabularyTerm('CBOT_1.4.36.0') +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_CBOT_14360.setDescription(None) +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_CBOT_14360.setLabel('cBot 1.4.36.0') +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_CBOT_14360.setOrdinal(1) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.addTerm(vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_CBOT_14360) + +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_GALAXY_06 = tr.createNewVocabularyTerm('GALAXY_0.6') +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_GALAXY_06.setDescription('Old Cluster Station') +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_GALAXY_06.setLabel('Galaxy 0.6 Build 98') +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_GALAXY_06.setOrdinal(2) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.addTerm(vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_GALAXY_06) + +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_NOT_KNOWN = tr.createNewVocabularyTerm('NOT_KNOWN') +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_NOT_KNOWN.setDescription(None) +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_NOT_KNOWN.setLabel(None) +vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_NOT_KNOWN.setOrdinal(3) +vocabulary_CLUSTER_STATION_SOFTWARE_VERSION.addTerm(vocabulary_term_CLUSTER_STATION_SOFTWARE_VERSION_NOT_KNOWN) + +vocabulary_CONTROL_LANE = tr.getOrCreateNewVocabulary('CONTROL_LANE') +vocabulary_CONTROL_LANE.setDescription(None) +vocabulary_CONTROL_LANE.setUrlTemplate(None) +vocabulary_CONTROL_LANE.setManagedInternally(False) +vocabulary_CONTROL_LANE.setInternalNamespace(False) +vocabulary_CONTROL_LANE.setChosenFromList(True) + +vocabulary_term_CONTROL_LANE_1 = tr.createNewVocabularyTerm('1') +vocabulary_term_CONTROL_LANE_1.setDescription(None) +vocabulary_term_CONTROL_LANE_1.setLabel(None) +vocabulary_term_CONTROL_LANE_1.setOrdinal(1) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_1) + +vocabulary_term_CONTROL_LANE_2 = tr.createNewVocabularyTerm('2') +vocabulary_term_CONTROL_LANE_2.setDescription(None) +vocabulary_term_CONTROL_LANE_2.setLabel(None) +vocabulary_term_CONTROL_LANE_2.setOrdinal(2) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_2) + +vocabulary_term_CONTROL_LANE_3 = tr.createNewVocabularyTerm('3') +vocabulary_term_CONTROL_LANE_3.setDescription(None) +vocabulary_term_CONTROL_LANE_3.setLabel(None) +vocabulary_term_CONTROL_LANE_3.setOrdinal(3) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_3) + +vocabulary_term_CONTROL_LANE_4 = tr.createNewVocabularyTerm('4') +vocabulary_term_CONTROL_LANE_4.setDescription(None) +vocabulary_term_CONTROL_LANE_4.setLabel(None) +vocabulary_term_CONTROL_LANE_4.setOrdinal(4) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_4) + +vocabulary_term_CONTROL_LANE_5 = tr.createNewVocabularyTerm('5') +vocabulary_term_CONTROL_LANE_5.setDescription(None) +vocabulary_term_CONTROL_LANE_5.setLabel(None) +vocabulary_term_CONTROL_LANE_5.setOrdinal(5) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_5) + +vocabulary_term_CONTROL_LANE_6 = tr.createNewVocabularyTerm('6') +vocabulary_term_CONTROL_LANE_6.setDescription(None) +vocabulary_term_CONTROL_LANE_6.setLabel(None) +vocabulary_term_CONTROL_LANE_6.setOrdinal(6) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_6) + +vocabulary_term_CONTROL_LANE_7 = tr.createNewVocabularyTerm('7') +vocabulary_term_CONTROL_LANE_7.setDescription(None) +vocabulary_term_CONTROL_LANE_7.setLabel(None) +vocabulary_term_CONTROL_LANE_7.setOrdinal(7) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_7) + +vocabulary_term_CONTROL_LANE_8 = tr.createNewVocabularyTerm('8') +vocabulary_term_CONTROL_LANE_8.setDescription(None) +vocabulary_term_CONTROL_LANE_8.setLabel(None) +vocabulary_term_CONTROL_LANE_8.setOrdinal(8) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_8) + +vocabulary_term_CONTROL_LANE_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_CONTROL_LANE_NONE.setDescription(None) +vocabulary_term_CONTROL_LANE_NONE.setLabel(None) +vocabulary_term_CONTROL_LANE_NONE.setOrdinal(9) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_NONE) + +vocabulary_term_CONTROL_LANE_0 = tr.createNewVocabularyTerm('0') +vocabulary_term_CONTROL_LANE_0.setDescription(None) +vocabulary_term_CONTROL_LANE_0.setLabel(None) +vocabulary_term_CONTROL_LANE_0.setOrdinal(10) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_0) + +vocabulary_CYCLES = tr.getOrCreateNewVocabulary('CYCLES') +vocabulary_CYCLES.setDescription('Number of cycles') +vocabulary_CYCLES.setUrlTemplate(None) +vocabulary_CYCLES.setManagedInternally(False) +vocabulary_CYCLES.setInternalNamespace(False) +vocabulary_CYCLES.setChosenFromList(True) + +vocabulary_term_CYCLES_36 = tr.createNewVocabularyTerm('36') +vocabulary_term_CYCLES_36.setDescription(None) +vocabulary_term_CYCLES_36.setLabel(None) +vocabulary_term_CYCLES_36.setOrdinal(1) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_36) + +vocabulary_term_CYCLES_50 = tr.createNewVocabularyTerm('50') +vocabulary_term_CYCLES_50.setDescription(None) +vocabulary_term_CYCLES_50.setLabel(None) +vocabulary_term_CYCLES_50.setOrdinal(2) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_50) + +vocabulary_term_CYCLES_76 = tr.createNewVocabularyTerm('76') +vocabulary_term_CYCLES_76.setDescription(None) +vocabulary_term_CYCLES_76.setLabel(None) +vocabulary_term_CYCLES_76.setOrdinal(3) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_76) + +vocabulary_term_CYCLES_101 = tr.createNewVocabularyTerm('101') +vocabulary_term_CYCLES_101.setDescription(None) +vocabulary_term_CYCLES_101.setLabel(None) +vocabulary_term_CYCLES_101.setOrdinal(4) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_101) + +vocabulary_term_CYCLES_51 = tr.createNewVocabularyTerm('51') +vocabulary_term_CYCLES_51.setDescription(None) +vocabulary_term_CYCLES_51.setLabel(None) +vocabulary_term_CYCLES_51.setOrdinal(5) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_51) + +vocabulary_term_CYCLES_58 = tr.createNewVocabularyTerm('58') +vocabulary_term_CYCLES_58.setDescription(None) +vocabulary_term_CYCLES_58.setLabel(None) +vocabulary_term_CYCLES_58.setOrdinal(6) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_58) + +vocabulary_term_CYCLES_125 = tr.createNewVocabularyTerm('125') +vocabulary_term_CYCLES_125.setDescription(None) +vocabulary_term_CYCLES_125.setLabel(None) +vocabulary_term_CYCLES_125.setOrdinal(7) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_125) + +vocabulary_term_CYCLES_151 = tr.createNewVocabularyTerm('151') +vocabulary_term_CYCLES_151.setDescription(None) +vocabulary_term_CYCLES_151.setLabel(None) +vocabulary_term_CYCLES_151.setOrdinal(8) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_151) + +vocabulary_term_CYCLES_100 = tr.createNewVocabularyTerm('100') +vocabulary_term_CYCLES_100.setDescription(None) +vocabulary_term_CYCLES_100.setLabel(None) +vocabulary_term_CYCLES_100.setOrdinal(9) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_100) + +vocabulary_term_CYCLES_108 = tr.createNewVocabularyTerm('108') +vocabulary_term_CYCLES_108.setDescription(None) +vocabulary_term_CYCLES_108.setLabel(None) +vocabulary_term_CYCLES_108.setOrdinal(10) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_108) + +vocabulary_term_CYCLES_150 = tr.createNewVocabularyTerm('150') +vocabulary_term_CYCLES_150.setDescription(None) +vocabulary_term_CYCLES_150.setLabel(None) +vocabulary_term_CYCLES_150.setOrdinal(11) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_150) + +vocabulary_term_CYCLES_49 = tr.createNewVocabularyTerm('49') +vocabulary_term_CYCLES_49.setDescription(None) +vocabulary_term_CYCLES_49.setLabel(None) +vocabulary_term_CYCLES_49.setOrdinal(12) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_49) + +vocabulary_term_CYCLES_55 = tr.createNewVocabularyTerm('55') +vocabulary_term_CYCLES_55.setDescription(None) +vocabulary_term_CYCLES_55.setLabel(None) +vocabulary_term_CYCLES_55.setOrdinal(13) +vocabulary_CYCLES.addTerm(vocabulary_term_CYCLES_55) + +vocabulary_END_TYPE = tr.getOrCreateNewVocabulary('END_TYPE') +vocabulary_END_TYPE.setDescription('Sequencing method') +vocabulary_END_TYPE.setUrlTemplate(None) +vocabulary_END_TYPE.setManagedInternally(False) +vocabulary_END_TYPE.setInternalNamespace(False) +vocabulary_END_TYPE.setChosenFromList(True) + +vocabulary_term_END_TYPE_SINGLE_READ = tr.createNewVocabularyTerm('SINGLE_READ') +vocabulary_term_END_TYPE_SINGLE_READ.setDescription(None) +vocabulary_term_END_TYPE_SINGLE_READ.setLabel(None) +vocabulary_term_END_TYPE_SINGLE_READ.setOrdinal(1) +vocabulary_END_TYPE.addTerm(vocabulary_term_END_TYPE_SINGLE_READ) + +vocabulary_term_END_TYPE_PAIRED_END = tr.createNewVocabularyTerm('PAIRED_END') +vocabulary_term_END_TYPE_PAIRED_END.setDescription(None) +vocabulary_term_END_TYPE_PAIRED_END.setLabel(None) +vocabulary_term_END_TYPE_PAIRED_END.setOrdinal(2) +vocabulary_END_TYPE.addTerm(vocabulary_term_END_TYPE_PAIRED_END) + +vocabulary_EXPERIMENT_DESIGN = tr.getOrCreateNewVocabulary('EXPERIMENT_DESIGN') +vocabulary_EXPERIMENT_DESIGN.setDescription('General Intent') +vocabulary_EXPERIMENT_DESIGN.setUrlTemplate(None) +vocabulary_EXPERIMENT_DESIGN.setManagedInternally(False) +vocabulary_EXPERIMENT_DESIGN.setInternalNamespace(False) +vocabulary_EXPERIMENT_DESIGN.setChosenFromList(True) + +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION = tr.createNewVocabularyTerm('BINDING_SITE_IDENTIFICATION') +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setLabel('Binding Site Identification') +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setOrdinal(1) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION) + +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS = tr.createNewVocabularyTerm('CHROMATIN_MARKS') +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setLabel('Chromatin Marks') +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setOrdinal(2) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS) + +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION = tr.createNewVocabularyTerm('COMPARATIVE_GENOMIC_HYBRIDIZATION') +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setLabel('Comparative Genomic Hybridization') +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setOrdinal(3) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION) + +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION = tr.createNewVocabularyTerm('DIFFERENTIAL_EXPRESSION') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setLabel('Differential Expression') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setOrdinal(4) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION) + +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING = tr.createNewVocabularyTerm('DIFFERENTIAL_SPLICING') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setLabel('Differential Splicing') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setOrdinal(5) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING) + +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION = tr.createNewVocabularyTerm('EXPRESSION') +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setLabel('Expression') +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setOrdinal(6) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION) + +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT = tr.createNewVocabularyTerm('SEQUENCE_ENRICHMENT') +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setLabel('Sequence Enrichment') +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setOrdinal(7) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT) + +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION = tr.createNewVocabularyTerm('TRANSCRIPT_IDENTIFICATION') +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setLabel('Transcript Identification') +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setOrdinal(8) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION) + +vocabulary_term_EXPERIMENT_DESIGN_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_EXPERIMENT_DESIGN_OTHER.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_OTHER.setLabel('Other') +vocabulary_term_EXPERIMENT_DESIGN_OTHER.setOrdinal(9) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_OTHER) + +vocabulary_INDEX1 = tr.getOrCreateNewVocabulary('INDEX1') +vocabulary_INDEX1.setDescription('Index 1 for Illumina Indexing') +vocabulary_INDEX1.setUrlTemplate(None) +vocabulary_INDEX1.setManagedInternally(False) +vocabulary_INDEX1.setInternalNamespace(False) +vocabulary_INDEX1.setChosenFromList(True) + +vocabulary_term_INDEX1_ATCACGA = tr.createNewVocabularyTerm('ATCACGA') +vocabulary_term_INDEX1_ATCACGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ATCACGA.setLabel('Index1 ATCACGA') +vocabulary_term_INDEX1_ATCACGA.setOrdinal(1) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATCACGA) + +vocabulary_term_INDEX1_CGATGTA = tr.createNewVocabularyTerm('CGATGTA') +vocabulary_term_INDEX1_CGATGTA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CGATGTA.setLabel('Index2 CGATGTA') +vocabulary_term_INDEX1_CGATGTA.setOrdinal(2) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGATGTA) + +vocabulary_term_INDEX1_TTAGGCA = tr.createNewVocabularyTerm('TTAGGCA') +vocabulary_term_INDEX1_TTAGGCA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_TTAGGCA.setLabel('Index3 TTAGGCA') +vocabulary_term_INDEX1_TTAGGCA.setOrdinal(3) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTAGGCA) + +vocabulary_term_INDEX1_TGACCAA = tr.createNewVocabularyTerm('TGACCAA') +vocabulary_term_INDEX1_TGACCAA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_TGACCAA.setLabel('Index4 TGACCAA') +vocabulary_term_INDEX1_TGACCAA.setOrdinal(4) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TGACCAA) + +vocabulary_term_INDEX1_ACAGTGA = tr.createNewVocabularyTerm('ACAGTGA') +vocabulary_term_INDEX1_ACAGTGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ACAGTGA.setLabel('Index5 ACAGTGA') +vocabulary_term_INDEX1_ACAGTGA.setOrdinal(5) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACAGTGA) + +vocabulary_term_INDEX1_GCCAATA = tr.createNewVocabularyTerm('GCCAATA') +vocabulary_term_INDEX1_GCCAATA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GCCAATA.setLabel('Index6 GCCAATA') +vocabulary_term_INDEX1_GCCAATA.setOrdinal(6) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCCAATA) + +vocabulary_term_INDEX1_CAGATCA = tr.createNewVocabularyTerm('CAGATCA') +vocabulary_term_INDEX1_CAGATCA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CAGATCA.setLabel('Index7 CAGATCA') +vocabulary_term_INDEX1_CAGATCA.setOrdinal(7) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGATCA) + +vocabulary_term_INDEX1_ACTTGAA = tr.createNewVocabularyTerm('ACTTGAA') +vocabulary_term_INDEX1_ACTTGAA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ACTTGAA.setLabel('Index8 ACTTGAA') +vocabulary_term_INDEX1_ACTTGAA.setOrdinal(8) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTTGAA) + +vocabulary_term_INDEX1_GATCAGA = tr.createNewVocabularyTerm('GATCAGA') +vocabulary_term_INDEX1_GATCAGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GATCAGA.setLabel('Index9 GATCAGA') +vocabulary_term_INDEX1_GATCAGA.setOrdinal(9) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GATCAGA) + +vocabulary_term_INDEX1_TAGCTTA = tr.createNewVocabularyTerm('TAGCTTA') +vocabulary_term_INDEX1_TAGCTTA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_TAGCTTA.setLabel('Index10 TAGCTTA') +vocabulary_term_INDEX1_TAGCTTA.setOrdinal(10) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAGCTTA) + +vocabulary_term_INDEX1_GGCTACA = tr.createNewVocabularyTerm('GGCTACA') +vocabulary_term_INDEX1_GGCTACA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GGCTACA.setLabel('Index11 GGCTACA') +vocabulary_term_INDEX1_GGCTACA.setOrdinal(11) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGCTACA) + +vocabulary_term_INDEX1_CTTGTAA = tr.createNewVocabularyTerm('CTTGTAA') +vocabulary_term_INDEX1_CTTGTAA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CTTGTAA.setLabel('Index12 CTTGTAA') +vocabulary_term_INDEX1_CTTGTAA.setOrdinal(12) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTTGTAA) + +vocabulary_term_INDEX1_AGATACA = tr.createNewVocabularyTerm('AGATACA') +vocabulary_term_INDEX1_AGATACA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_AGATACA.setLabel('Index13 AGATAC') +vocabulary_term_INDEX1_AGATACA.setOrdinal(13) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGATACA) + +vocabulary_term_INDEX1_AGTTCCG = tr.createNewVocabularyTerm('AGTTCCG') +vocabulary_term_INDEX1_AGTTCCG.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_AGTTCCG.setLabel('Index14 AGTTCCG') +vocabulary_term_INDEX1_AGTTCCG.setOrdinal(14) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGTTCCG) + +vocabulary_term_INDEX1_ATGTCAG = tr.createNewVocabularyTerm('ATGTCAG') +vocabulary_term_INDEX1_ATGTCAG.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ATGTCAG.setLabel('Index15 ATGTCAG') +vocabulary_term_INDEX1_ATGTCAG.setOrdinal(15) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGTCAG) + +vocabulary_term_INDEX1_CCGTCCC = tr.createNewVocabularyTerm('CCGTCCC') +vocabulary_term_INDEX1_CCGTCCC.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CCGTCCC.setLabel('Index16 CCGTCCC') +vocabulary_term_INDEX1_CCGTCCC.setOrdinal(16) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGTCCC) + +vocabulary_term_INDEX1_GTCCGCA = tr.createNewVocabularyTerm('GTCCGCA') +vocabulary_term_INDEX1_GTCCGCA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTCCGCA.setLabel('Index18 GTCCGCA') +vocabulary_term_INDEX1_GTCCGCA.setOrdinal(17) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTCCGCA) + +vocabulary_term_INDEX1_GTGAAAC = tr.createNewVocabularyTerm('GTGAAAC') +vocabulary_term_INDEX1_GTGAAAC.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTGAAAC.setLabel('Index19 GTGAAAC') +vocabulary_term_INDEX1_GTGAAAC.setOrdinal(18) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGAAAC) + +vocabulary_term_INDEX1_GTGGCCT = tr.createNewVocabularyTerm('GTGGCCT') +vocabulary_term_INDEX1_GTGGCCT.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTGGCCT.setLabel('Index20 GTGGCCT') +vocabulary_term_INDEX1_GTGGCCT.setOrdinal(19) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGGCCT) + +vocabulary_term_INDEX1_GTTTCGG = tr.createNewVocabularyTerm('GTTTCGG') +vocabulary_term_INDEX1_GTTTCGG.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTTTCGG.setLabel('Index21 GTTTCGG') +vocabulary_term_INDEX1_GTTTCGG.setOrdinal(20) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTTTCGG) + +vocabulary_term_INDEX1_CGTACGT = tr.createNewVocabularyTerm('CGTACGT') +vocabulary_term_INDEX1_CGTACGT.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CGTACGT.setLabel('Index22 CGTACGT') +vocabulary_term_INDEX1_CGTACGT.setOrdinal(21) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACGT) + +vocabulary_term_INDEX1_GAGTGGA = tr.createNewVocabularyTerm('GAGTGGA') +vocabulary_term_INDEX1_GAGTGGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GAGTGGA.setLabel('Index23 GAGTGGA') +vocabulary_term_INDEX1_GAGTGGA.setOrdinal(22) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GAGTGGA) + +vocabulary_term_INDEX1_ACTGATA = tr.createNewVocabularyTerm('ACTGATA') +vocabulary_term_INDEX1_ACTGATA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ACTGATA.setLabel('Index25 ACTGATA') +vocabulary_term_INDEX1_ACTGATA.setOrdinal(23) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTGATA) + +vocabulary_term_INDEX1_ATTCCTT = tr.createNewVocabularyTerm('ATTCCTT') +vocabulary_term_INDEX1_ATTCCTT.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ATTCCTT.setLabel('Index27 ATTCCTT') +vocabulary_term_INDEX1_ATTCCTT.setOrdinal(24) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATTCCTT) + +vocabulary_term_INDEX1_TAAGGCGA = tr.createNewVocabularyTerm('TAAGGCGA') +vocabulary_term_INDEX1_TAAGGCGA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_TAAGGCGA.setLabel('Index1 (i7) N701 TAAGGCGA') +vocabulary_term_INDEX1_TAAGGCGA.setOrdinal(25) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAAGGCGA) + +vocabulary_term_INDEX1_CGTACTAG = tr.createNewVocabularyTerm('CGTACTAG') +vocabulary_term_INDEX1_CGTACTAG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CGTACTAG.setLabel('Index1 (i7) N702 CGTACTAG') +vocabulary_term_INDEX1_CGTACTAG.setOrdinal(26) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACTAG) + +vocabulary_term_INDEX1_AGGCAGAA = tr.createNewVocabularyTerm('AGGCAGAA') +vocabulary_term_INDEX1_AGGCAGAA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_AGGCAGAA.setLabel('Index1 (i7) N703 AGGCAGAA') +vocabulary_term_INDEX1_AGGCAGAA.setOrdinal(27) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGGCAGAA) + +vocabulary_term_INDEX1_TCCTGAGC = tr.createNewVocabularyTerm('TCCTGAGC') +vocabulary_term_INDEX1_TCCTGAGC.setDescription('Nextera DNA') +vocabulary_term_INDEX1_TCCTGAGC.setLabel('Index1 (i7) N704 TCCTGAGC') +vocabulary_term_INDEX1_TCCTGAGC.setOrdinal(28) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCTGAGC) + +vocabulary_term_INDEX1_GGACTCCT = tr.createNewVocabularyTerm('GGACTCCT') +vocabulary_term_INDEX1_GGACTCCT.setDescription('Nextera DNA') +vocabulary_term_INDEX1_GGACTCCT.setLabel('Index1 (i7) N705 GGACTCCT') +vocabulary_term_INDEX1_GGACTCCT.setOrdinal(29) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGACTCCT) + +vocabulary_term_INDEX1_TAGGCATG = tr.createNewVocabularyTerm('TAGGCATG') +vocabulary_term_INDEX1_TAGGCATG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_TAGGCATG.setLabel('Index1 (i7) N706 TAGGCATG') +vocabulary_term_INDEX1_TAGGCATG.setOrdinal(30) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAGGCATG) + +vocabulary_term_INDEX1_CTCTCTAC = tr.createNewVocabularyTerm('CTCTCTAC') +vocabulary_term_INDEX1_CTCTCTAC.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CTCTCTAC.setLabel('Index1 (i7) N707 CTCTCTAC') +vocabulary_term_INDEX1_CTCTCTAC.setOrdinal(31) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTCTCTAC) + +vocabulary_term_INDEX1_CAGAGAGG = tr.createNewVocabularyTerm('CAGAGAGG') +vocabulary_term_INDEX1_CAGAGAGG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CAGAGAGG.setLabel('Index1 (i7) N708 CAGAGAGG') +vocabulary_term_INDEX1_CAGAGAGG.setOrdinal(32) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGAGAGG) + +vocabulary_term_INDEX1_GCTACGCT = tr.createNewVocabularyTerm('GCTACGCT') +vocabulary_term_INDEX1_GCTACGCT.setDescription('Nextera DNA') +vocabulary_term_INDEX1_GCTACGCT.setLabel('Index1 (i7) N709 GCTACGCT') +vocabulary_term_INDEX1_GCTACGCT.setOrdinal(33) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCTACGCT) + +vocabulary_term_INDEX1_CGAGGCTG = tr.createNewVocabularyTerm('CGAGGCTG') +vocabulary_term_INDEX1_CGAGGCTG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CGAGGCTG.setLabel('Index1 (i7) N710 CGAGGCTG') +vocabulary_term_INDEX1_CGAGGCTG.setOrdinal(34) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGAGGCTG) + +vocabulary_term_INDEX1_AAGAGGCA = tr.createNewVocabularyTerm('AAGAGGCA') +vocabulary_term_INDEX1_AAGAGGCA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_AAGAGGCA.setLabel('Index1 (i7) N711 AAGAGGCA') +vocabulary_term_INDEX1_AAGAGGCA.setOrdinal(35) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AAGAGGCA) + +vocabulary_term_INDEX1_GTAGAGGA = tr.createNewVocabularyTerm('GTAGAGGA') +vocabulary_term_INDEX1_GTAGAGGA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_GTAGAGGA.setLabel('Index1 (i7) N712 GTAGAGGA') +vocabulary_term_INDEX1_GTAGAGGA.setOrdinal(36) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTAGAGGA) + +vocabulary_term_INDEX1_AAGACTA = tr.createNewVocabularyTerm('AAGACTA') +vocabulary_term_INDEX1_AAGACTA.setDescription(None) +vocabulary_term_INDEX1_AAGACTA.setLabel('02 AAGACT') +vocabulary_term_INDEX1_AAGACTA.setOrdinal(37) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AAGACTA) + +vocabulary_term_INDEX1_ACTTCAA = tr.createNewVocabularyTerm('ACTTCAA') +vocabulary_term_INDEX1_ACTTCAA.setDescription(None) +vocabulary_term_INDEX1_ACTTCAA.setLabel('10 ACTTCA') +vocabulary_term_INDEX1_ACTTCAA.setOrdinal(38) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTTCAA) + +vocabulary_term_INDEX1_AGGTTGA = tr.createNewVocabularyTerm('AGGTTGA') +vocabulary_term_INDEX1_AGGTTGA.setDescription(None) +vocabulary_term_INDEX1_AGGTTGA.setLabel('17 AGGTTG') +vocabulary_term_INDEX1_AGGTTGA.setOrdinal(39) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGGTTGA) + +vocabulary_term_INDEX1_TTCGTCA = tr.createNewVocabularyTerm('TTCGTCA') +vocabulary_term_INDEX1_TTCGTCA.setDescription(None) +vocabulary_term_INDEX1_TTCGTCA.setLabel('17 TTCGTCA') +vocabulary_term_INDEX1_TTCGTCA.setOrdinal(40) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTCGTCA) + +vocabulary_term_INDEX1_AGCATAA = tr.createNewVocabularyTerm('AGCATAA') +vocabulary_term_INDEX1_AGCATAA.setDescription(None) +vocabulary_term_INDEX1_AGCATAA.setLabel('20 AGCATAA') +vocabulary_term_INDEX1_AGCATAA.setOrdinal(41) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGCATAA) + +vocabulary_term_INDEX1_ATACGCA = tr.createNewVocabularyTerm('ATACGCA') +vocabulary_term_INDEX1_ATACGCA.setDescription(None) +vocabulary_term_INDEX1_ATACGCA.setLabel('20 ATACGC') +vocabulary_term_INDEX1_ATACGCA.setOrdinal(42) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATACGCA) + +vocabulary_term_INDEX1_CAGATGA = tr.createNewVocabularyTerm('CAGATGA') +vocabulary_term_INDEX1_CAGATGA.setDescription(None) +vocabulary_term_INDEX1_CAGATGA.setLabel('28 CAGATG') +vocabulary_term_INDEX1_CAGATGA.setOrdinal(43) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGATGA) + +vocabulary_term_INDEX1_CCGAATA = tr.createNewVocabularyTerm('CCGAATA') +vocabulary_term_INDEX1_CCGAATA.setDescription(None) +vocabulary_term_INDEX1_CCGAATA.setLabel('34 CCGAAT') +vocabulary_term_INDEX1_CCGAATA.setOrdinal(44) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGAATA) + +vocabulary_term_INDEX1_CGCTCGA = tr.createNewVocabularyTerm('CGCTCGA') +vocabulary_term_INDEX1_CGCTCGA.setDescription(None) +vocabulary_term_INDEX1_CGCTCGA.setLabel('43 CGCTCG') +vocabulary_term_INDEX1_CGCTCGA.setOrdinal(45) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGCTCGA) + +vocabulary_term_INDEX1_CGTATTA = tr.createNewVocabularyTerm('CGTATTA') +vocabulary_term_INDEX1_CGTATTA.setDescription(None) +vocabulary_term_INDEX1_CGTATTA.setLabel('45 CGTATT') +vocabulary_term_INDEX1_CGTATTA.setOrdinal(46) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTATTA) + +vocabulary_term_INDEX1_CCATGAA = tr.createNewVocabularyTerm('CCATGAA') +vocabulary_term_INDEX1_CCATGAA.setDescription(None) +vocabulary_term_INDEX1_CCATGAA.setLabel('50 CCATGAA') +vocabulary_term_INDEX1_CCATGAA.setOrdinal(47) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCATGAA) + +vocabulary_term_INDEX1_CTGACCA = tr.createNewVocabularyTerm('CTGACCA') +vocabulary_term_INDEX1_CTGACCA.setDescription(None) +vocabulary_term_INDEX1_CTGACCA.setLabel('50 CTGACC') +vocabulary_term_INDEX1_CTGACCA.setOrdinal(48) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTGACCA) + +vocabulary_term_INDEX1_GAAGCCA = tr.createNewVocabularyTerm('GAAGCCA') +vocabulary_term_INDEX1_GAAGCCA.setDescription(None) +vocabulary_term_INDEX1_GAAGCCA.setLabel('52 GAAGCC') +vocabulary_term_INDEX1_GAAGCCA.setOrdinal(49) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GAAGCCA) + +vocabulary_term_INDEX1_GCTGAAA = tr.createNewVocabularyTerm('GCTGAAA') +vocabulary_term_INDEX1_GCTGAAA.setDescription(None) +vocabulary_term_INDEX1_GCTGAAA.setLabel('59 GCTGAA') +vocabulary_term_INDEX1_GCTGAAA.setOrdinal(50) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCTGAAA) + +vocabulary_term_INDEX1_GTCGCGA = tr.createNewVocabularyTerm('GTCGCGA') +vocabulary_term_INDEX1_GTCGCGA.setDescription(None) +vocabulary_term_INDEX1_GTCGCGA.setLabel('64 GTCGCG') +vocabulary_term_INDEX1_GTCGCGA.setOrdinal(51) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTCGCGA) + +vocabulary_term_INDEX1_TAAGATA = tr.createNewVocabularyTerm('TAAGATA') +vocabulary_term_INDEX1_TAAGATA.setDescription(None) +vocabulary_term_INDEX1_TAAGATA.setLabel('65 TAAGAT') +vocabulary_term_INDEX1_TAAGATA.setOrdinal(52) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAAGATA) + +vocabulary_term_INDEX1_GCGCTGA = tr.createNewVocabularyTerm('GCGCTGA') +vocabulary_term_INDEX1_GCGCTGA.setDescription(None) +vocabulary_term_INDEX1_GCGCTGA.setLabel('66 GCGCTGA') +vocabulary_term_INDEX1_GCGCTGA.setOrdinal(53) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCGCTGA) + +vocabulary_term_INDEX1_TATCGTA = tr.createNewVocabularyTerm('TATCGTA') +vocabulary_term_INDEX1_TATCGTA.setDescription(None) +vocabulary_term_INDEX1_TATCGTA.setLabel('66 TATCGT') +vocabulary_term_INDEX1_TATCGTA.setOrdinal(54) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TATCGTA) + +vocabulary_term_INDEX1_TCCTACA = tr.createNewVocabularyTerm('TCCTACA') +vocabulary_term_INDEX1_TCCTACA.setDescription(None) +vocabulary_term_INDEX1_TCCTACA.setLabel('68 TCCTAC') +vocabulary_term_INDEX1_TCCTACA.setOrdinal(55) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCTACA) + +vocabulary_term_INDEX1_TCTATAA = tr.createNewVocabularyTerm('TCTATAA') +vocabulary_term_INDEX1_TCTATAA.setDescription(None) +vocabulary_term_INDEX1_TCTATAA.setLabel('70 TCTATA') +vocabulary_term_INDEX1_TCTATAA.setOrdinal(56) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCTATAA) + +vocabulary_term_INDEX1_TTACTTA = tr.createNewVocabularyTerm('TTACTTA') +vocabulary_term_INDEX1_TTACTTA.setDescription(None) +vocabulary_term_INDEX1_TTACTTA.setLabel('74 TTACTT') +vocabulary_term_INDEX1_TTACTTA.setOrdinal(57) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTACTTA) + +vocabulary_term_INDEX1_TTCCGAA = tr.createNewVocabularyTerm('TTCCGAA') +vocabulary_term_INDEX1_TTCCGAA.setDescription(None) +vocabulary_term_INDEX1_TTCCGAA.setLabel('75 TTCCGA') +vocabulary_term_INDEX1_TTCCGAA.setOrdinal(58) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTCCGAA) + +vocabulary_term_INDEX1_ATGTCAA = tr.createNewVocabularyTerm('ATGTCAA') +vocabulary_term_INDEX1_ATGTCAA.setDescription(None) +vocabulary_term_INDEX1_ATGTCAA.setLabel('DNA Adapter 15') +vocabulary_term_INDEX1_ATGTCAA.setOrdinal(59) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGTCAA) + +vocabulary_term_INDEX1_CCGTCCA = tr.createNewVocabularyTerm('CCGTCCA') +vocabulary_term_INDEX1_CCGTCCA.setDescription(None) +vocabulary_term_INDEX1_CCGTCCA.setLabel('DNA Adapter 16') +vocabulary_term_INDEX1_CCGTCCA.setOrdinal(60) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGTCCA) + +vocabulary_term_INDEX1_GTAGAGA = tr.createNewVocabularyTerm('GTAGAGA') +vocabulary_term_INDEX1_GTAGAGA.setDescription(None) +vocabulary_term_INDEX1_GTAGAGA.setLabel('DNA Adapter 17') +vocabulary_term_INDEX1_GTAGAGA.setOrdinal(61) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTAGAGA) + +vocabulary_term_INDEX1_GTGAAAA = tr.createNewVocabularyTerm('GTGAAAA') +vocabulary_term_INDEX1_GTGAAAA.setDescription(None) +vocabulary_term_INDEX1_GTGAAAA.setLabel('DNA Adapter 19') +vocabulary_term_INDEX1_GTGAAAA.setOrdinal(62) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGAAAA) + +vocabulary_term_INDEX1_GTGGCCA = tr.createNewVocabularyTerm('GTGGCCA') +vocabulary_term_INDEX1_GTGGCCA.setDescription(None) +vocabulary_term_INDEX1_GTGGCCA.setLabel('DNA Adapter 20') +vocabulary_term_INDEX1_GTGGCCA.setOrdinal(63) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGGCCA) + +vocabulary_term_INDEX1_GTTTCGA = tr.createNewVocabularyTerm('GTTTCGA') +vocabulary_term_INDEX1_GTTTCGA.setDescription(None) +vocabulary_term_INDEX1_GTTTCGA.setLabel('DNA Adapter 21') +vocabulary_term_INDEX1_GTTTCGA.setOrdinal(64) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTTTCGA) + +vocabulary_term_INDEX1_CGTACGA = tr.createNewVocabularyTerm('CGTACGA') +vocabulary_term_INDEX1_CGTACGA.setDescription(None) +vocabulary_term_INDEX1_CGTACGA.setLabel('DNA Adapter 22') +vocabulary_term_INDEX1_CGTACGA.setOrdinal(65) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACGA) + +vocabulary_term_INDEX1_GGTAGCA = tr.createNewVocabularyTerm('GGTAGCA') +vocabulary_term_INDEX1_GGTAGCA.setDescription(None) +vocabulary_term_INDEX1_GGTAGCA.setLabel('DNA Adapter 24') +vocabulary_term_INDEX1_GGTAGCA.setOrdinal(66) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGTAGCA) + +vocabulary_term_INDEX1_ATGAGCA = tr.createNewVocabularyTerm('ATGAGCA') +vocabulary_term_INDEX1_ATGAGCA.setDescription(None) +vocabulary_term_INDEX1_ATGAGCA.setLabel('DNA Adapter 26') +vocabulary_term_INDEX1_ATGAGCA.setOrdinal(67) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGAGCA) + +vocabulary_term_INDEX1_ATTCCTA = tr.createNewVocabularyTerm('ATTCCTA') +vocabulary_term_INDEX1_ATTCCTA.setDescription(None) +vocabulary_term_INDEX1_ATTCCTA.setLabel('DNA Adapter 27') +vocabulary_term_INDEX1_ATTCCTA.setOrdinal(68) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATTCCTA) + +vocabulary_term_INDEX1_CAAAAGA = tr.createNewVocabularyTerm('CAAAAGA') +vocabulary_term_INDEX1_CAAAAGA.setDescription(None) +vocabulary_term_INDEX1_CAAAAGA.setLabel('DNA Adapter 28') +vocabulary_term_INDEX1_CAAAAGA.setOrdinal(69) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAAAAGA) + +vocabulary_term_INDEX1_CAACTAA = tr.createNewVocabularyTerm('CAACTAA') +vocabulary_term_INDEX1_CAACTAA.setDescription(None) +vocabulary_term_INDEX1_CAACTAA.setLabel('DNA Adapter 29') +vocabulary_term_INDEX1_CAACTAA.setOrdinal(70) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAACTAA) + +vocabulary_term_INDEX1_CACCGGA = tr.createNewVocabularyTerm('CACCGGA') +vocabulary_term_INDEX1_CACCGGA.setDescription(None) +vocabulary_term_INDEX1_CACCGGA.setLabel('DNA Adapter 30') +vocabulary_term_INDEX1_CACCGGA.setOrdinal(71) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACCGGA) + +vocabulary_term_INDEX1_CACGATA = tr.createNewVocabularyTerm('CACGATA') +vocabulary_term_INDEX1_CACGATA.setDescription(None) +vocabulary_term_INDEX1_CACGATA.setLabel('DNA Adapter 31') +vocabulary_term_INDEX1_CACGATA.setOrdinal(72) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACGATA) + +vocabulary_term_INDEX1_CACTCAA = tr.createNewVocabularyTerm('CACTCAA') +vocabulary_term_INDEX1_CACTCAA.setDescription(None) +vocabulary_term_INDEX1_CACTCAA.setLabel('DNA Adapter 32') +vocabulary_term_INDEX1_CACTCAA.setOrdinal(73) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACTCAA) + +vocabulary_term_INDEX1_CAGGCGA = tr.createNewVocabularyTerm('CAGGCGA') +vocabulary_term_INDEX1_CAGGCGA.setDescription(None) +vocabulary_term_INDEX1_CAGGCGA.setLabel('DNA Adapter 33') +vocabulary_term_INDEX1_CAGGCGA.setOrdinal(74) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGGCGA) + +vocabulary_term_INDEX1_CATGGCA = tr.createNewVocabularyTerm('CATGGCA') +vocabulary_term_INDEX1_CATGGCA.setDescription(None) +vocabulary_term_INDEX1_CATGGCA.setLabel('DNA Adapter 34') +vocabulary_term_INDEX1_CATGGCA.setOrdinal(75) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CATGGCA) + +vocabulary_term_INDEX1_CATTTTA = tr.createNewVocabularyTerm('CATTTTA') +vocabulary_term_INDEX1_CATTTTA.setDescription(None) +vocabulary_term_INDEX1_CATTTTA.setLabel('DNA Adapter 35') +vocabulary_term_INDEX1_CATTTTA.setOrdinal(76) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CATTTTA) + +vocabulary_term_INDEX1_CCAACAA = tr.createNewVocabularyTerm('CCAACAA') +vocabulary_term_INDEX1_CCAACAA.setDescription(None) +vocabulary_term_INDEX1_CCAACAA.setLabel('DNA Adapter 36') +vocabulary_term_INDEX1_CCAACAA.setOrdinal(77) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCAACAA) + +vocabulary_term_INDEX1_CGGAATA = tr.createNewVocabularyTerm('CGGAATA') +vocabulary_term_INDEX1_CGGAATA.setDescription(None) +vocabulary_term_INDEX1_CGGAATA.setLabel('DNA Adapter 37') +vocabulary_term_INDEX1_CGGAATA.setOrdinal(78) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGGAATA) + +vocabulary_term_INDEX1_CTAGCTA = tr.createNewVocabularyTerm('CTAGCTA') +vocabulary_term_INDEX1_CTAGCTA.setDescription(None) +vocabulary_term_INDEX1_CTAGCTA.setLabel('DNA Adapter 38') +vocabulary_term_INDEX1_CTAGCTA.setOrdinal(79) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTAGCTA) + +vocabulary_term_INDEX1_CTATACA = tr.createNewVocabularyTerm('CTATACA') +vocabulary_term_INDEX1_CTATACA.setDescription(None) +vocabulary_term_INDEX1_CTATACA.setLabel('DNA Adapter 39') +vocabulary_term_INDEX1_CTATACA.setOrdinal(80) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTATACA) + +vocabulary_term_INDEX1_CTCAGAA = tr.createNewVocabularyTerm('CTCAGAA') +vocabulary_term_INDEX1_CTCAGAA.setDescription(None) +vocabulary_term_INDEX1_CTCAGAA.setLabel('DNA Adapter 40') +vocabulary_term_INDEX1_CTCAGAA.setOrdinal(81) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTCAGAA) + +vocabulary_term_INDEX1_GACGACA = tr.createNewVocabularyTerm('GACGACA') +vocabulary_term_INDEX1_GACGACA.setDescription(None) +vocabulary_term_INDEX1_GACGACA.setLabel('DNA Adapter 41') +vocabulary_term_INDEX1_GACGACA.setOrdinal(82) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GACGACA) + +vocabulary_term_INDEX1_TAATCGA = tr.createNewVocabularyTerm('TAATCGA') +vocabulary_term_INDEX1_TAATCGA.setDescription(None) +vocabulary_term_INDEX1_TAATCGA.setLabel('DNA Adapter 42') +vocabulary_term_INDEX1_TAATCGA.setOrdinal(83) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAATCGA) + +vocabulary_term_INDEX1_TACAGCA = tr.createNewVocabularyTerm('TACAGCA') +vocabulary_term_INDEX1_TACAGCA.setDescription(None) +vocabulary_term_INDEX1_TACAGCA.setLabel('DNA Adapter 43') +vocabulary_term_INDEX1_TACAGCA.setOrdinal(84) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TACAGCA) + +vocabulary_term_INDEX1_TATAATA = tr.createNewVocabularyTerm('TATAATA') +vocabulary_term_INDEX1_TATAATA.setDescription(None) +vocabulary_term_INDEX1_TATAATA.setLabel('DNA Adapter 44') +vocabulary_term_INDEX1_TATAATA.setOrdinal(85) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TATAATA) + +vocabulary_term_INDEX1_TCATTCA = tr.createNewVocabularyTerm('TCATTCA') +vocabulary_term_INDEX1_TCATTCA.setDescription(None) +vocabulary_term_INDEX1_TCATTCA.setLabel('DNA Adapter 45') +vocabulary_term_INDEX1_TCATTCA.setOrdinal(86) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCATTCA) + +vocabulary_term_INDEX1_TCCCGAA = tr.createNewVocabularyTerm('TCCCGAA') +vocabulary_term_INDEX1_TCCCGAA.setDescription(None) +vocabulary_term_INDEX1_TCCCGAA.setLabel('DNA Adapter 46') +vocabulary_term_INDEX1_TCCCGAA.setOrdinal(87) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCCGAA) + +vocabulary_term_INDEX1_TCGAAGA = tr.createNewVocabularyTerm('TCGAAGA') +vocabulary_term_INDEX1_TCGAAGA.setDescription(None) +vocabulary_term_INDEX1_TCGAAGA.setLabel('DNA Adapter 47') +vocabulary_term_INDEX1_TCGAAGA.setOrdinal(88) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCGAAGA) + +vocabulary_term_INDEX1_TCGGCAA = tr.createNewVocabularyTerm('TCGGCAA') +vocabulary_term_INDEX1_TCGGCAA.setDescription(None) +vocabulary_term_INDEX1_TCGGCAA.setLabel('DNA Adapter 48') +vocabulary_term_INDEX1_TCGGCAA.setOrdinal(89) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCGGCAA) + +vocabulary_term_INDEX1_AGTCAAC = tr.createNewVocabularyTerm('AGTCAAC') +vocabulary_term_INDEX1_AGTCAAC.setDescription(None) +vocabulary_term_INDEX1_AGTCAAC.setLabel('Index13 AGTCAAC') +vocabulary_term_INDEX1_AGTCAAC.setOrdinal(90) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGTCAAC) + +vocabulary_term_INDEX1_AATGCGA = tr.createNewVocabularyTerm('AATGCGA') +vocabulary_term_INDEX1_AATGCGA.setDescription(None) +vocabulary_term_INDEX1_AATGCGA.setLabel('Lib AATGCGA') +vocabulary_term_INDEX1_AATGCGA.setOrdinal(91) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AATGCGA) + +vocabulary_INDEX2 = tr.getOrCreateNewVocabulary('INDEX2') +vocabulary_INDEX2.setDescription('Index 2 for Illumina Dual Indexing') +vocabulary_INDEX2.setUrlTemplate(None) +vocabulary_INDEX2.setManagedInternally(False) +vocabulary_INDEX2.setInternalNamespace(False) +vocabulary_INDEX2.setChosenFromList(True) + +vocabulary_term_INDEX2_TAGATCGC = tr.createNewVocabularyTerm('TAGATCGC') +vocabulary_term_INDEX2_TAGATCGC.setDescription('Nextera DNA') +vocabulary_term_INDEX2_TAGATCGC.setLabel('Index2 (i5) N501 TAGATCGC') +vocabulary_term_INDEX2_TAGATCGC.setOrdinal(1) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_TAGATCGC) + +vocabulary_term_INDEX2_CTCTCTAT = tr.createNewVocabularyTerm('CTCTCTAT') +vocabulary_term_INDEX2_CTCTCTAT.setDescription('Nextera DNA') +vocabulary_term_INDEX2_CTCTCTAT.setLabel('Index2 (i5) N502 CTCTCTAT') +vocabulary_term_INDEX2_CTCTCTAT.setOrdinal(2) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_CTCTCTAT) + +vocabulary_term_INDEX2_TATCCTCT = tr.createNewVocabularyTerm('TATCCTCT') +vocabulary_term_INDEX2_TATCCTCT.setDescription('Nextera DNA') +vocabulary_term_INDEX2_TATCCTCT.setLabel('Index2 (i5) N503 TATCCTCT') +vocabulary_term_INDEX2_TATCCTCT.setOrdinal(3) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_TATCCTCT) + +vocabulary_term_INDEX2_AGAGTAGA = tr.createNewVocabularyTerm('AGAGTAGA') +vocabulary_term_INDEX2_AGAGTAGA.setDescription('Nextera DNA') +vocabulary_term_INDEX2_AGAGTAGA.setLabel('Index2 (i5) N504 AGAGTAGA') +vocabulary_term_INDEX2_AGAGTAGA.setOrdinal(4) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_AGAGTAGA) + +vocabulary_term_INDEX2_GTAAGGAG = tr.createNewVocabularyTerm('GTAAGGAG') +vocabulary_term_INDEX2_GTAAGGAG.setDescription('Nextera DNA') +vocabulary_term_INDEX2_GTAAGGAG.setLabel('Index2 (i5) N505 GTAAGGAG') +vocabulary_term_INDEX2_GTAAGGAG.setOrdinal(5) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_GTAAGGAG) + +vocabulary_term_INDEX2_ACTGCATA = tr.createNewVocabularyTerm('ACTGCATA') +vocabulary_term_INDEX2_ACTGCATA.setDescription('Nextera DNA') +vocabulary_term_INDEX2_ACTGCATA.setLabel('Index2 (i5) N506 ACTGCATA') +vocabulary_term_INDEX2_ACTGCATA.setOrdinal(6) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_ACTGCATA) + +vocabulary_term_INDEX2_AAGGAGTA = tr.createNewVocabularyTerm('AAGGAGTA') +vocabulary_term_INDEX2_AAGGAGTA.setDescription('Nextera DNA') +vocabulary_term_INDEX2_AAGGAGTA.setLabel('Index2 (i5) N507 AAGGAGTA') +vocabulary_term_INDEX2_AAGGAGTA.setOrdinal(7) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_AAGGAGTA) + +vocabulary_term_INDEX2_CTAAGCCT = tr.createNewVocabularyTerm('CTAAGCCT') +vocabulary_term_INDEX2_CTAAGCCT.setDescription('Nextera DNA') +vocabulary_term_INDEX2_CTAAGCCT.setLabel('Index2 (i5) N508 CTAAGCCT') +vocabulary_term_INDEX2_CTAAGCCT.setOrdinal(8) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_CTAAGCCT) + +vocabulary_KIT = tr.getOrCreateNewVocabulary('KIT') +vocabulary_KIT.setDescription('Illumina Kit used for preparation') +vocabulary_KIT.setUrlTemplate(None) +vocabulary_KIT.setManagedInternally(False) +vocabulary_KIT.setInternalNamespace(False) +vocabulary_KIT.setChosenFromList(True) + +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP = tr.createNewVocabularyTerm('CHIP_SEQ_SAMPLE_PREP') +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setLabel('ChIP-Seq Sample Preparation Kit') +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setOrdinal(1) +vocabulary_KIT.addTerm(vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP) + +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1 = tr.createNewVocabularyTerm('NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1') +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setDescription(None) +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setLabel('NEB Genomic DNA Sample Preparation Kit') +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setOrdinal(2) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1) + +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP = tr.createNewVocabularyTerm('GENOMICDNA_SAMPLE_PREP') +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setLabel('Illumina Genomic DNA Sample Preparation Kit') +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setOrdinal(3) +vocabulary_KIT.addTerm(vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP) + +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP = tr.createNewVocabularyTerm('PAIRED_END_DNA_SAMPLE_PREP') +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setLabel('Paired End DNA Sample Prep Oligo Kit') +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setOrdinal(4) +vocabulary_KIT.addTerm(vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP) + +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP = tr.createNewVocabularyTerm('MRNA_SEQ_SAMPLE_PREP') +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setLabel('mRNA-Seq Sample Preparation Kit') +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setOrdinal(5) +vocabulary_KIT.addTerm(vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP) + +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT = tr.createNewVocabularyTerm('RIBOZERO_SCRIPTSEQ_MRNA-SEQ_KIT') +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setDescription(None) +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setLabel('RiboZero ScriptSeq mRNA-Seq_Epicentre-kit') +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setOrdinal(6) +vocabulary_KIT.addTerm(vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT) + +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT = tr.createNewVocabularyTerm('POLYA_SCRIPTSEQ_MRNA-SEQ_KIT') +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setDescription(None) +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setLabel('PolyA(Beads) ScriptSeq mRNA-Seq_Epicentre-kit') +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setOrdinal(7) +vocabulary_KIT.addTerm(vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT) + +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS = tr.createNewVocabularyTerm('NEXTERA_DNA_SAMPLE_PREP_KITS') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setDescription(None) +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setLabel('Nextera Genomic DNA Sample Preparation Kit BufferLMW(Epicentre)') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setOrdinal(8) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS) + +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW = tr.createNewVocabularyTerm('NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setDescription(None) +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setLabel('Nextera Genomic DNA Sample Preparation Kit BufferHMW(Epicentre)') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setOrdinal(9) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW) + +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM = tr.createNewVocabularyTerm('AGILENT_SURESELECT_ENRICHMENTSYSTEM') +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setDescription(None) +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setLabel('Agilent_SureSelect_EnrichmentSystem') +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setOrdinal(10) +vocabulary_KIT.addTerm(vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM) + +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUSEQRNA_SAMPLE_PREP_KIT') +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setDescription(None) +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setLabel('TruSeq_RNA_SamplePrepKit_Illumina') +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setOrdinal(11) +vocabulary_KIT.addTerm(vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT) + +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUSEQ_DNA_SAMPLE_PREP_KIT') +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setDescription(None) +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setLabel('TruSeq_DNA_SamplePrepKit_Illumina') +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setOrdinal(12) +vocabulary_KIT.addTerm(vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT) + +vocabulary_term_KIT_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_KIT_NONE.setDescription(None) +vocabulary_term_KIT_NONE.setLabel('None (Already prepared)') +vocabulary_term_KIT_NONE.setOrdinal(13) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NONE) + +vocabulary_MACS_VERSION = tr.getOrCreateNewVocabulary('MACS_VERSION') +vocabulary_MACS_VERSION.setDescription('Used MACS version for Peak Calling') +vocabulary_MACS_VERSION.setUrlTemplate(None) +vocabulary_MACS_VERSION.setManagedInternally(False) +vocabulary_MACS_VERSION.setInternalNamespace(False) +vocabulary_MACS_VERSION.setChosenFromList(True) + +vocabulary_term_MACS_VERSION_140RC2 = tr.createNewVocabularyTerm('1.4.0RC2') +vocabulary_term_MACS_VERSION_140RC2.setDescription(None) +vocabulary_term_MACS_VERSION_140RC2.setLabel('macs14 1.4.0rc2 20110214 (Valentine)') +vocabulary_term_MACS_VERSION_140RC2.setOrdinal(1) +vocabulary_MACS_VERSION.addTerm(vocabulary_term_MACS_VERSION_140RC2) + +vocabulary_term_MACS_VERSION_1371 = tr.createNewVocabularyTerm('1.3.7.1') +vocabulary_term_MACS_VERSION_1371.setDescription(None) +vocabulary_term_MACS_VERSION_1371.setLabel('macs 1.3.7.1 (Oktoberfest, bug fixed #1)') +vocabulary_term_MACS_VERSION_1371.setOrdinal(2) +vocabulary_MACS_VERSION.addTerm(vocabulary_term_MACS_VERSION_1371) + +vocabulary_MISMATCH_IN_INDEX = tr.getOrCreateNewVocabulary('MISMATCH_IN_INDEX') +vocabulary_MISMATCH_IN_INDEX.setDescription('Mismatch in Index allowed') +vocabulary_MISMATCH_IN_INDEX.setUrlTemplate(None) +vocabulary_MISMATCH_IN_INDEX.setManagedInternally(False) +vocabulary_MISMATCH_IN_INDEX.setInternalNamespace(False) +vocabulary_MISMATCH_IN_INDEX.setChosenFromList(True) + +vocabulary_term_MISMATCH_IN_INDEX_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_MISMATCH_IN_INDEX_NONE.setDescription(None) +vocabulary_term_MISMATCH_IN_INDEX_NONE.setLabel(None) +vocabulary_term_MISMATCH_IN_INDEX_NONE.setOrdinal(1) +vocabulary_MISMATCH_IN_INDEX.addTerm(vocabulary_term_MISMATCH_IN_INDEX_NONE) + +vocabulary_term_MISMATCH_IN_INDEX_ONE = tr.createNewVocabularyTerm('ONE') +vocabulary_term_MISMATCH_IN_INDEX_ONE.setDescription(None) +vocabulary_term_MISMATCH_IN_INDEX_ONE.setLabel(None) +vocabulary_term_MISMATCH_IN_INDEX_ONE.setOrdinal(2) +vocabulary_MISMATCH_IN_INDEX.addTerm(vocabulary_term_MISMATCH_IN_INDEX_ONE) + +vocabulary_NANO_DROP = tr.getOrCreateNewVocabulary('NANO_DROP') +vocabulary_NANO_DROP.setDescription('Device for measuring the total amount of genetic material contained in the probe') +vocabulary_NANO_DROP.setUrlTemplate(None) +vocabulary_NANO_DROP.setManagedInternally(False) +vocabulary_NANO_DROP.setInternalNamespace(False) +vocabulary_NANO_DROP.setChosenFromList(True) + +vocabulary_term_NANO_DROP_CONCND3300 = tr.createNewVocabularyTerm('CONCND3300') +vocabulary_term_NANO_DROP_CONCND3300.setDescription(None) +vocabulary_term_NANO_DROP_CONCND3300.setLabel('Conc Nano Drop 3300') +vocabulary_term_NANO_DROP_CONCND3300.setOrdinal(1) +vocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND3300) + +vocabulary_term_NANO_DROP_CONCND1000 = tr.createNewVocabularyTerm('CONCND1000') +vocabulary_term_NANO_DROP_CONCND1000.setDescription(None) +vocabulary_term_NANO_DROP_CONCND1000.setLabel('Conc Nano Drop 1000') +vocabulary_term_NANO_DROP_CONCND1000.setOrdinal(2) +vocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND1000) + +vocabulary_term_NANO_DROP_CONCND2000 = tr.createNewVocabularyTerm('CONCND2000') +vocabulary_term_NANO_DROP_CONCND2000.setDescription(None) +vocabulary_term_NANO_DROP_CONCND2000.setLabel('Conc Nano Drop 2000') +vocabulary_term_NANO_DROP_CONCND2000.setOrdinal(3) +vocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND2000) + +vocabulary_NCBI_TAXONOMY = tr.getOrCreateNewVocabulary('NCBI_TAXONOMY') +vocabulary_NCBI_TAXONOMY.setDescription(None) +vocabulary_NCBI_TAXONOMY.setUrlTemplate('http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$term$') +vocabulary_NCBI_TAXONOMY.setManagedInternally(False) +vocabulary_NCBI_TAXONOMY.setInternalNamespace(False) +vocabulary_NCBI_TAXONOMY.setChosenFromList(True) + +vocabulary_term_NCBI_TAXONOMY_10090 = tr.createNewVocabularyTerm('10090') +vocabulary_term_NCBI_TAXONOMY_10090.setDescription('Genbank common name: house mouse\ Inherited blast name: rodents') +vocabulary_term_NCBI_TAXONOMY_10090.setLabel('Mus musculus') +vocabulary_term_NCBI_TAXONOMY_10090.setOrdinal(1) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10090) + +vocabulary_term_NCBI_TAXONOMY_9606 = tr.createNewVocabularyTerm('9606') +vocabulary_term_NCBI_TAXONOMY_9606.setDescription('Genbank common name: human\ Inherited blast name: primates') +vocabulary_term_NCBI_TAXONOMY_9606.setLabel('Homo sapiens') +vocabulary_term_NCBI_TAXONOMY_9606.setOrdinal(2) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9606) + +vocabulary_term_NCBI_TAXONOMY_7227 = tr.createNewVocabularyTerm('7227') +vocabulary_term_NCBI_TAXONOMY_7227.setDescription('Genbank common name: fruit fly\ Inherited blast name: flies') +vocabulary_term_NCBI_TAXONOMY_7227.setLabel('Drosophila melanogaster') +vocabulary_term_NCBI_TAXONOMY_7227.setOrdinal(3) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_7227) + +vocabulary_term_NCBI_TAXONOMY_6239 = tr.createNewVocabularyTerm('6239') +vocabulary_term_NCBI_TAXONOMY_6239.setDescription('Inherited blast name: nematodes') +vocabulary_term_NCBI_TAXONOMY_6239.setLabel('Caenorhabditis elegans') +vocabulary_term_NCBI_TAXONOMY_6239.setOrdinal(4) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_6239) + +vocabulary_term_NCBI_TAXONOMY_4932 = tr.createNewVocabularyTerm('4932') +vocabulary_term_NCBI_TAXONOMY_4932.setDescription('Genbank common name: baker\'s yeast\ Inherited blast name: ascomycetes') +vocabulary_term_NCBI_TAXONOMY_4932.setLabel('Saccharomyces cerevisiae') +vocabulary_term_NCBI_TAXONOMY_4932.setOrdinal(5) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4932) + +vocabulary_term_NCBI_TAXONOMY_10116 = tr.createNewVocabularyTerm('10116') +vocabulary_term_NCBI_TAXONOMY_10116.setDescription('Genbank common name: Norway rat\ Inherited blast name: rodents') +vocabulary_term_NCBI_TAXONOMY_10116.setLabel('Rattus norvegicus') +vocabulary_term_NCBI_TAXONOMY_10116.setOrdinal(6) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10116) + +vocabulary_term_NCBI_TAXONOMY_6669 = tr.createNewVocabularyTerm('6669') +vocabulary_term_NCBI_TAXONOMY_6669.setDescription('Genbank common name: common water flea\ Inherited blast name: crustaceans') +vocabulary_term_NCBI_TAXONOMY_6669.setLabel('Daphnia pulex') +vocabulary_term_NCBI_TAXONOMY_6669.setOrdinal(7) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_6669) + +vocabulary_term_NCBI_TAXONOMY_562 = tr.createNewVocabularyTerm('562') +vocabulary_term_NCBI_TAXONOMY_562.setDescription('Inherited blast name: enterobacteria') +vocabulary_term_NCBI_TAXONOMY_562.setLabel('Escherichia coli') +vocabulary_term_NCBI_TAXONOMY_562.setOrdinal(8) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_562) + +vocabulary_term_NCBI_TAXONOMY_623 = tr.createNewVocabularyTerm('623') +vocabulary_term_NCBI_TAXONOMY_623.setDescription('Inherited blast name: enterobacteria') +vocabulary_term_NCBI_TAXONOMY_623.setLabel('Shigella flexneri') +vocabulary_term_NCBI_TAXONOMY_623.setOrdinal(9) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_623) + +vocabulary_term_NCBI_TAXONOMY_10847 = tr.createNewVocabularyTerm('10847') +vocabulary_term_NCBI_TAXONOMY_10847.setDescription('Inherited blast name: viruses') +vocabulary_term_NCBI_TAXONOMY_10847.setLabel('Enterobacteria phage phiX174') +vocabulary_term_NCBI_TAXONOMY_10847.setOrdinal(10) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10847) + +vocabulary_term_NCBI_TAXONOMY_190650 = tr.createNewVocabularyTerm('190650') +vocabulary_term_NCBI_TAXONOMY_190650.setDescription('Inherited blast name: a-proteobacteria') +vocabulary_term_NCBI_TAXONOMY_190650.setLabel('Caulobacter crescentus CB15') +vocabulary_term_NCBI_TAXONOMY_190650.setOrdinal(11) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_190650) + +vocabulary_term_NCBI_TAXONOMY_8113 = tr.createNewVocabularyTerm('8113') +vocabulary_term_NCBI_TAXONOMY_8113.setDescription('Genbank common name: cichlids\ Inherited blast name: bony fishes') +vocabulary_term_NCBI_TAXONOMY_8113.setLabel('Cichlidae') +vocabulary_term_NCBI_TAXONOMY_8113.setOrdinal(12) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_8113) + +vocabulary_term_NCBI_TAXONOMY_481459 = tr.createNewVocabularyTerm('481459') +vocabulary_term_NCBI_TAXONOMY_481459.setDescription('Genbank common name: three-spined stickleback\ Inherited blast name: bony fishes') +vocabulary_term_NCBI_TAXONOMY_481459.setLabel('Gasterosteus aculeatus aculeatus') +vocabulary_term_NCBI_TAXONOMY_481459.setOrdinal(13) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_481459) + +vocabulary_term_NCBI_TAXONOMY_282301 = tr.createNewVocabularyTerm('282301') +vocabulary_term_NCBI_TAXONOMY_282301.setDescription('Inherited blast name: flatworms') +vocabulary_term_NCBI_TAXONOMY_282301.setLabel('Macrostomum lignano') +vocabulary_term_NCBI_TAXONOMY_282301.setOrdinal(14) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_282301) + +vocabulary_term_NCBI_TAXONOMY_99287 = tr.createNewVocabularyTerm('99287') +vocabulary_term_NCBI_TAXONOMY_99287.setDescription('Inherited blast name: enterobacteria') +vocabulary_term_NCBI_TAXONOMY_99287.setLabel('Salmonella enterica subsp. enterica serovar Typhimurium str. LT2') +vocabulary_term_NCBI_TAXONOMY_99287.setOrdinal(15) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_99287) + +vocabulary_term_NCBI_TAXONOMY_4896 = tr.createNewVocabularyTerm('4896') +vocabulary_term_NCBI_TAXONOMY_4896.setDescription('Genbank common name: fission yeast\ Inherited blast name: ascomycetes') +vocabulary_term_NCBI_TAXONOMY_4896.setLabel('Schizosaccharomyces pombe') +vocabulary_term_NCBI_TAXONOMY_4896.setOrdinal(16) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4896) + +vocabulary_term_NCBI_TAXONOMY_4897 = tr.createNewVocabularyTerm('4897') +vocabulary_term_NCBI_TAXONOMY_4897.setDescription('Inherited blast name: ascomycetes') +vocabulary_term_NCBI_TAXONOMY_4897.setLabel('Schizosaccharomyces japonicus') +vocabulary_term_NCBI_TAXONOMY_4897.setOrdinal(17) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4897) + +vocabulary_term_NCBI_TAXONOMY_7955 = tr.createNewVocabularyTerm('7955') +vocabulary_term_NCBI_TAXONOMY_7955.setDescription('Genbank common name: zebrafish\ Inherited blast name: bony fishes') +vocabulary_term_NCBI_TAXONOMY_7955.setLabel('Danio rerio') +vocabulary_term_NCBI_TAXONOMY_7955.setOrdinal(18) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_7955) + +vocabulary_term_NCBI_TAXONOMY_3702 = tr.createNewVocabularyTerm('3702') +vocabulary_term_NCBI_TAXONOMY_3702.setDescription('Genbank common name: thale cress\ Inherited blast name: eudicots') +vocabulary_term_NCBI_TAXONOMY_3702.setLabel('Arabidopsis thaliana') +vocabulary_term_NCBI_TAXONOMY_3702.setOrdinal(19) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3702) + +vocabulary_term_NCBI_TAXONOMY_225322 = tr.createNewVocabularyTerm('225322') +vocabulary_term_NCBI_TAXONOMY_225322.setDescription('Bacterium which infects Daphnia\ Pasteuria ramosa Metchnikoff 1888 (Approved Lists 1980) emend. Starr et al. 1986\ Ebert D, Rainey P, Embley TM, Scholz D. Development, life\ cycle, ultrastructure and phylogenetic position of Pasteuria ramosa Metchnikoff 1888: rediscovery of an obligate \ endoparasite of Daphnia magna Straus. Philos Trans R Soc \ Lond Ser B. 1996;351:1689.') +vocabulary_term_NCBI_TAXONOMY_225322.setLabel('Pasteuria ramosa') +vocabulary_term_NCBI_TAXONOMY_225322.setOrdinal(20) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_225322) + +vocabulary_term_NCBI_TAXONOMY_9913 = tr.createNewVocabularyTerm('9913') +vocabulary_term_NCBI_TAXONOMY_9913.setDescription('Genbank common name: cattle\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9913.setLabel('Bos taurus') +vocabulary_term_NCBI_TAXONOMY_9913.setOrdinal(21) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9913) + +vocabulary_term_NCBI_TAXONOMY_9823 = tr.createNewVocabularyTerm('9823') +vocabulary_term_NCBI_TAXONOMY_9823.setDescription('Genbank common name: pig\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9823.setLabel('Sus scrofa') +vocabulary_term_NCBI_TAXONOMY_9823.setOrdinal(22) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9823) + +vocabulary_term_NCBI_TAXONOMY_9940 = tr.createNewVocabularyTerm('9940') +vocabulary_term_NCBI_TAXONOMY_9940.setDescription('Genbank common name: sheep\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9940.setLabel('Ovis aries') +vocabulary_term_NCBI_TAXONOMY_9940.setOrdinal(23) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9940) + +vocabulary_term_NCBI_TAXONOMY_9925 = tr.createNewVocabularyTerm('9925') +vocabulary_term_NCBI_TAXONOMY_9925.setDescription('Genbank common name: goat\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9925.setLabel('Capra hircus') +vocabulary_term_NCBI_TAXONOMY_9925.setOrdinal(24) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9925) + +vocabulary_term_NCBI_TAXONOMY_8153 = tr.createNewVocabularyTerm('8153') +vocabulary_term_NCBI_TAXONOMY_8153.setDescription('Common name: cichlid fish') +vocabulary_term_NCBI_TAXONOMY_8153.setLabel('Haplochromis burtoni') +vocabulary_term_NCBI_TAXONOMY_8153.setOrdinal(25) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_8153) + +vocabulary_term_NCBI_TAXONOMY_61818 = tr.createNewVocabularyTerm('61818') +vocabulary_term_NCBI_TAXONOMY_61818.setDescription('Common name: bony fish') +vocabulary_term_NCBI_TAXONOMY_61818.setLabel('Amphilophus (nicaraguan)') +vocabulary_term_NCBI_TAXONOMY_61818.setOrdinal(26) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_61818) + +vocabulary_term_NCBI_TAXONOMY_35525 = tr.createNewVocabularyTerm('35525') +vocabulary_term_NCBI_TAXONOMY_35525.setDescription('Common name: water flea') +vocabulary_term_NCBI_TAXONOMY_35525.setLabel('Daphnia Magna') +vocabulary_term_NCBI_TAXONOMY_35525.setOrdinal(27) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_35525) + +vocabulary_term_NCBI_TAXONOMY_4081 = tr.createNewVocabularyTerm('4081') +vocabulary_term_NCBI_TAXONOMY_4081.setDescription('Common Name: tomato') +vocabulary_term_NCBI_TAXONOMY_4081.setLabel('Solanum lycopersicum (tomato)') +vocabulary_term_NCBI_TAXONOMY_4081.setOrdinal(28) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4081) + +vocabulary_term_NCBI_TAXONOMY_13068 = tr.createNewVocabularyTerm('13068') +vocabulary_term_NCBI_TAXONOMY_13068.setDescription('Common name: earwig') +vocabulary_term_NCBI_TAXONOMY_13068.setLabel('Forficula auricularia (earwig)') +vocabulary_term_NCBI_TAXONOMY_13068.setOrdinal(29) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_13068) + +vocabulary_term_NCBI_TAXONOMY_3569 = tr.createNewVocabularyTerm('3569') +vocabulary_term_NCBI_TAXONOMY_3569.setDescription('Genbank common name: clove pink') +vocabulary_term_NCBI_TAXONOMY_3569.setLabel('Dianthus') +vocabulary_term_NCBI_TAXONOMY_3569.setOrdinal(30) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3569) + +vocabulary_term_NCBI_TAXONOMY_3573 = tr.createNewVocabularyTerm('3573') +vocabulary_term_NCBI_TAXONOMY_3573.setDescription('Genbank common name: campions\ Inherited blast name: eudicots') +vocabulary_term_NCBI_TAXONOMY_3573.setLabel('Silene') +vocabulary_term_NCBI_TAXONOMY_3573.setOrdinal(31) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3573) + +vocabulary_term_NCBI_TAXONOMY_32644 = tr.createNewVocabularyTerm('32644') +vocabulary_term_NCBI_TAXONOMY_32644.setDescription('Inherited blast name: unclassified') +vocabulary_term_NCBI_TAXONOMY_32644.setLabel('unidentified') +vocabulary_term_NCBI_TAXONOMY_32644.setOrdinal(32) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_32644) + +vocabulary_PIPELINE_VERSION = tr.getOrCreateNewVocabulary('PIPELINE_VERSION') +vocabulary_PIPELINE_VERSION.setDescription('With which pipeline version has the data been analyzed?') +vocabulary_PIPELINE_VERSION.setUrlTemplate(None) +vocabulary_PIPELINE_VERSION.setManagedInternally(False) +vocabulary_PIPELINE_VERSION.setInternalNamespace(False) +vocabulary_PIPELINE_VERSION.setChosenFromList(True) + +vocabulary_term_PIPELINE_VERSION_11348 = tr.createNewVocabularyTerm('1.13.48') +vocabulary_term_PIPELINE_VERSION_11348.setDescription(None) +vocabulary_term_PIPELINE_VERSION_11348.setLabel('RTA 1.13.48') +vocabulary_term_PIPELINE_VERSION_11348.setOrdinal(1) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_11348) + +vocabulary_term_PIPELINE_VERSION_11242 = tr.createNewVocabularyTerm('1.12.4.2') +vocabulary_term_PIPELINE_VERSION_11242.setDescription('Real Time Analysis in combination with HCS 1.4.8') +vocabulary_term_PIPELINE_VERSION_11242.setLabel('RTA 1.12.4.2 (HiSeq 2000)') +vocabulary_term_PIPELINE_VERSION_11242.setOrdinal(2) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_11242) + +vocabulary_term_PIPELINE_VERSION_112 = tr.createNewVocabularyTerm('1.12') +vocabulary_term_PIPELINE_VERSION_112.setDescription('Real Time Analysis 1.12 HiSeq 2000') +vocabulary_term_PIPELINE_VERSION_112.setLabel('RTA 1.12') +vocabulary_term_PIPELINE_VERSION_112.setOrdinal(4) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_112) + +vocabulary_term_PIPELINE_VERSION_19 = tr.createNewVocabularyTerm('1.9') +vocabulary_term_PIPELINE_VERSION_19.setDescription('Real Time Analysis 1.9') +vocabulary_term_PIPELINE_VERSION_19.setLabel('RTA 1.9 (GA IIx)') +vocabulary_term_PIPELINE_VERSION_19.setOrdinal(5) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_19) + +vocabulary_term_PIPELINE_VERSION_RTA_18 = tr.createNewVocabularyTerm('RTA_1.8') +vocabulary_term_PIPELINE_VERSION_RTA_18.setDescription('Real Time Analysis 1.8') +vocabulary_term_PIPELINE_VERSION_RTA_18.setLabel('RTA 1.8') +vocabulary_term_PIPELINE_VERSION_RTA_18.setOrdinal(6) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_18) + +vocabulary_term_PIPELINE_VERSION_RTA_16 = tr.createNewVocabularyTerm('RTA_1.6') +vocabulary_term_PIPELINE_VERSION_RTA_16.setDescription('Real Time Analysis 1.6') +vocabulary_term_PIPELINE_VERSION_RTA_16.setLabel('RTA 1.6') +vocabulary_term_PIPELINE_VERSION_RTA_16.setOrdinal(7) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_16) + +vocabulary_term_PIPELINE_VERSION_RTA_15 = tr.createNewVocabularyTerm('RTA_1.5') +vocabulary_term_PIPELINE_VERSION_RTA_15.setDescription(None) +vocabulary_term_PIPELINE_VERSION_RTA_15.setLabel('RTA 1.5') +vocabulary_term_PIPELINE_VERSION_RTA_15.setOrdinal(8) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_15) + +vocabulary_term_PIPELINE_VERSION_RTA_14150 = tr.createNewVocabularyTerm('RTA_1.4.15.0') +vocabulary_term_PIPELINE_VERSION_RTA_14150.setDescription(None) +vocabulary_term_PIPELINE_VERSION_RTA_14150.setLabel('RTA 1.4.15.0') +vocabulary_term_PIPELINE_VERSION_RTA_14150.setOrdinal(9) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_14150) + +vocabulary_term_PIPELINE_VERSION_15 = tr.createNewVocabularyTerm('1.5') +vocabulary_term_PIPELINE_VERSION_15.setDescription(None) +vocabulary_term_PIPELINE_VERSION_15.setLabel(None) +vocabulary_term_PIPELINE_VERSION_15.setOrdinal(10) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_15) + +vocabulary_term_PIPELINE_VERSION_14 = tr.createNewVocabularyTerm('1.4') +vocabulary_term_PIPELINE_VERSION_14.setDescription(None) +vocabulary_term_PIPELINE_VERSION_14.setLabel(None) +vocabulary_term_PIPELINE_VERSION_14.setOrdinal(11) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_14) + +vocabulary_term_PIPELINE_VERSION_132 = tr.createNewVocabularyTerm('1.3.2') +vocabulary_term_PIPELINE_VERSION_132.setDescription(None) +vocabulary_term_PIPELINE_VERSION_132.setLabel(None) +vocabulary_term_PIPELINE_VERSION_132.setOrdinal(12) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_132) + +vocabulary_term_PIPELINE_VERSION_10 = tr.createNewVocabularyTerm('1.0') +vocabulary_term_PIPELINE_VERSION_10.setDescription(None) +vocabulary_term_PIPELINE_VERSION_10.setLabel(None) +vocabulary_term_PIPELINE_VERSION_10.setOrdinal(13) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_10) + +vocabulary_term_PIPELINE_VERSION_PRE_10 = tr.createNewVocabularyTerm('PRE_1.0') +vocabulary_term_PIPELINE_VERSION_PRE_10.setDescription('Before Pipeline Version 1.0') +vocabulary_term_PIPELINE_VERSION_PRE_10.setLabel(None) +vocabulary_term_PIPELINE_VERSION_PRE_10.setOrdinal(14) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_PRE_10) + +vocabulary_term_PIPELINE_VERSION_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_PIPELINE_VERSION_NONE.setDescription(None) +vocabulary_term_PIPELINE_VERSION_NONE.setLabel(None) +vocabulary_term_PIPELINE_VERSION_NONE.setOrdinal(15) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_NONE) + +vocabulary_REQUIRED_LANES = tr.getOrCreateNewVocabulary('REQUIRED_LANES') +vocabulary_REQUIRED_LANES.setDescription('Amount of lanes needed for this probe') +vocabulary_REQUIRED_LANES.setUrlTemplate(None) +vocabulary_REQUIRED_LANES.setManagedInternally(False) +vocabulary_REQUIRED_LANES.setInternalNamespace(False) +vocabulary_REQUIRED_LANES.setChosenFromList(True) + +vocabulary_term_REQUIRED_LANES_1 = tr.createNewVocabularyTerm('1') +vocabulary_term_REQUIRED_LANES_1.setDescription(None) +vocabulary_term_REQUIRED_LANES_1.setLabel(None) +vocabulary_term_REQUIRED_LANES_1.setOrdinal(1) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_1) + +vocabulary_term_REQUIRED_LANES_2 = tr.createNewVocabularyTerm('2') +vocabulary_term_REQUIRED_LANES_2.setDescription(None) +vocabulary_term_REQUIRED_LANES_2.setLabel(None) +vocabulary_term_REQUIRED_LANES_2.setOrdinal(2) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_2) + +vocabulary_term_REQUIRED_LANES_3 = tr.createNewVocabularyTerm('3') +vocabulary_term_REQUIRED_LANES_3.setDescription(None) +vocabulary_term_REQUIRED_LANES_3.setLabel(None) +vocabulary_term_REQUIRED_LANES_3.setOrdinal(3) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_3) + +vocabulary_term_REQUIRED_LANES_4 = tr.createNewVocabularyTerm('4') +vocabulary_term_REQUIRED_LANES_4.setDescription(None) +vocabulary_term_REQUIRED_LANES_4.setLabel(None) +vocabulary_term_REQUIRED_LANES_4.setOrdinal(4) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_4) + +vocabulary_term_REQUIRED_LANES_5 = tr.createNewVocabularyTerm('5') +vocabulary_term_REQUIRED_LANES_5.setDescription(None) +vocabulary_term_REQUIRED_LANES_5.setLabel(None) +vocabulary_term_REQUIRED_LANES_5.setOrdinal(5) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_5) + +vocabulary_term_REQUIRED_LANES_6 = tr.createNewVocabularyTerm('6') +vocabulary_term_REQUIRED_LANES_6.setDescription(None) +vocabulary_term_REQUIRED_LANES_6.setLabel(None) +vocabulary_term_REQUIRED_LANES_6.setOrdinal(6) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_6) + +vocabulary_term_REQUIRED_LANES_7 = tr.createNewVocabularyTerm('7') +vocabulary_term_REQUIRED_LANES_7.setDescription(None) +vocabulary_term_REQUIRED_LANES_7.setLabel(None) +vocabulary_term_REQUIRED_LANES_7.setOrdinal(7) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_7) + +vocabulary_term_REQUIRED_LANES_8 = tr.createNewVocabularyTerm('8') +vocabulary_term_REQUIRED_LANES_8.setDescription(None) +vocabulary_term_REQUIRED_LANES_8.setLabel(None) +vocabulary_term_REQUIRED_LANES_8.setOrdinal(8) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_8) + +vocabulary_term_REQUIRED_LANES_9 = tr.createNewVocabularyTerm('9') +vocabulary_term_REQUIRED_LANES_9.setDescription(None) +vocabulary_term_REQUIRED_LANES_9.setLabel(None) +vocabulary_term_REQUIRED_LANES_9.setOrdinal(9) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_9) + +vocabulary_term_REQUIRED_LANES_10 = tr.createNewVocabularyTerm('10') +vocabulary_term_REQUIRED_LANES_10.setDescription(None) +vocabulary_term_REQUIRED_LANES_10.setLabel(None) +vocabulary_term_REQUIRED_LANES_10.setOrdinal(10) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_10) + +vocabulary_term_REQUIRED_LANES_11 = tr.createNewVocabularyTerm('11') +vocabulary_term_REQUIRED_LANES_11.setDescription(None) +vocabulary_term_REQUIRED_LANES_11.setLabel(None) +vocabulary_term_REQUIRED_LANES_11.setOrdinal(11) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_11) + +vocabulary_term_REQUIRED_LANES_12 = tr.createNewVocabularyTerm('12') +vocabulary_term_REQUIRED_LANES_12.setDescription(None) +vocabulary_term_REQUIRED_LANES_12.setLabel(None) +vocabulary_term_REQUIRED_LANES_12.setOrdinal(12) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_12) + +vocabulary_term_REQUIRED_LANES_13 = tr.createNewVocabularyTerm('13') +vocabulary_term_REQUIRED_LANES_13.setDescription(None) +vocabulary_term_REQUIRED_LANES_13.setLabel(None) +vocabulary_term_REQUIRED_LANES_13.setOrdinal(13) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_13) + +vocabulary_term_REQUIRED_LANES_14 = tr.createNewVocabularyTerm('14') +vocabulary_term_REQUIRED_LANES_14.setDescription(None) +vocabulary_term_REQUIRED_LANES_14.setLabel(None) +vocabulary_term_REQUIRED_LANES_14.setOrdinal(14) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_14) + +vocabulary_term_REQUIRED_LANES_15 = tr.createNewVocabularyTerm('15') +vocabulary_term_REQUIRED_LANES_15.setDescription(None) +vocabulary_term_REQUIRED_LANES_15.setLabel(None) +vocabulary_term_REQUIRED_LANES_15.setOrdinal(15) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_15) + +vocabulary_term_REQUIRED_LANES_16 = tr.createNewVocabularyTerm('16') +vocabulary_term_REQUIRED_LANES_16.setDescription(None) +vocabulary_term_REQUIRED_LANES_16.setLabel(None) +vocabulary_term_REQUIRED_LANES_16.setOrdinal(16) +vocabulary_REQUIRED_LANES.addTerm(vocabulary_term_REQUIRED_LANES_16) + +vocabulary_SAMPLE_LIBRARY_SELECTION = tr.getOrCreateNewVocabulary('SAMPLE_LIBRARY_SELECTION') +vocabulary_SAMPLE_LIBRARY_SELECTION.setDescription('Describes whether any method was used to select and/or enrich the material being sequenced.') +vocabulary_SAMPLE_LIBRARY_SELECTION.setUrlTemplate(None) +vocabulary_SAMPLE_LIBRARY_SELECTION.setManagedInternally(False) +vocabulary_SAMPLE_LIBRARY_SELECTION.setInternalNamespace(False) +vocabulary_SAMPLE_LIBRARY_SELECTION.setChosenFromList(True) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CHIP = tr.createNewVocabularyTerm('CHIP') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CHIP.setDescription('Chromatin immunoprecipitation') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CHIP.setLabel('ChIP') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CHIP.setOrdinal(1) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_CHIP) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MNASE = tr.createNewVocabularyTerm('MNASE') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MNASE.setDescription('Micrococcal Nuclease (MNase) digestion') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MNASE.setLabel('MNase') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MNASE.setOrdinal(2) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_MNASE) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RESTRICTION_DIGEST = tr.createNewVocabularyTerm('RESTRICTION_DIGEST') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RESTRICTION_DIGEST.setDescription('Restriction enzyme digestion') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RESTRICTION_DIGEST.setLabel('Restriction Digest') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RESTRICTION_DIGEST.setOrdinal(3) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_RESTRICTION_DIGEST) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_5METHYLCYTIDINE_ANTIBODY = tr.createNewVocabularyTerm('5-METHYLCYTIDINE_ANTIBODY') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_5METHYLCYTIDINE_ANTIBODY.setDescription('Methylated DNA immunoprecipitation') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_5METHYLCYTIDINE_ANTIBODY.setLabel('5-methylcytidine antibody') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_5METHYLCYTIDINE_ANTIBODY.setOrdinal(4) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_5METHYLCYTIDINE_ANTIBODY) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM = tr.createNewVocabularyTerm('RANDOM') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM.setDescription('Random shearing only') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM.setLabel('RANDOM') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM.setOrdinal(5) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MF = tr.createNewVocabularyTerm('MF') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MF.setDescription('Methyl Filtrated') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MF.setLabel('MF') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MF.setOrdinal(6) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_MF) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MSLL = tr.createNewVocabularyTerm('MSLL') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MSLL.setDescription('Methylation Spanning Linking Library') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MSLL.setLabel('MSLL') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_MSLL.setOrdinal(7) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_MSLL) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_HMPR = tr.createNewVocabularyTerm('HMPR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_HMPR.setDescription('Hypo-methylated partial restriction digest') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_HMPR.setLabel('HMPR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_HMPR.setOrdinal(8) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_HMPR) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CDNA = tr.createNewVocabularyTerm('CDNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CDNA.setDescription('complementary DNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CDNA.setLabel('cDNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CDNA.setOrdinal(9) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_CDNA) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_PCR = tr.createNewVocabularyTerm('PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_PCR.setDescription('Source material was selected by designed primers') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_PCR.setLabel('PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_PCR.setOrdinal(10) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_PCR) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM_PCR = tr.createNewVocabularyTerm('RANDOM_PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM_PCR.setDescription('Source material was selected by randomly generated primers') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM_PCR.setLabel('RANDOM PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM_PCR.setOrdinal(11) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_RANDOM_PCR) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RTPCR = tr.createNewVocabularyTerm('RT-PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RTPCR.setDescription('Source material was selected by reverse transcription PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RTPCR.setLabel('RT-PCR') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_RTPCR.setOrdinal(12) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_RTPCR) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFS = tr.createNewVocabularyTerm('CF-S') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFS.setDescription('Cot-filtered single/low-copy genomic DNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFS.setLabel('CF-S') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFS.setOrdinal(13) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFS) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFM = tr.createNewVocabularyTerm('CF-M') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFM.setDescription('Cot-filtered moderately repetitive genomic DNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFM.setLabel('CF-M') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFM.setOrdinal(14) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFM) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFH = tr.createNewVocabularyTerm('CF-H') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFH.setDescription('Cot-filtered highly repetitive genomic DNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFH.setLabel('CF-H') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFH.setOrdinal(15) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFH) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFT = tr.createNewVocabularyTerm('CF-T') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFT.setDescription('Cot-filtered theoretical single-copy genomic DNA') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFT.setLabel('CF-T') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFT.setOrdinal(16) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_CFT) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_OTHER.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SELECTION_OTHER.setLabel('other') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_OTHER.setOrdinal(17) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_OTHER) + +vocabulary_term_SAMPLE_LIBRARY_SELECTION_UNSPECIFIED = tr.createNewVocabularyTerm('UNSPECIFIED') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_UNSPECIFIED.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SELECTION_UNSPECIFIED.setLabel('unspecified') +vocabulary_term_SAMPLE_LIBRARY_SELECTION_UNSPECIFIED.setOrdinal(18) +vocabulary_SAMPLE_LIBRARY_SELECTION.addTerm(vocabulary_term_SAMPLE_LIBRARY_SELECTION_UNSPECIFIED) + +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC = tr.getOrCreateNewVocabulary('SAMPLE_LIBRARY_SOURCE_VOC') +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.setDescription(None) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.setUrlTemplate(None) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.setManagedInternally(False) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.setInternalNamespace(False) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.setChosenFromList(True) + +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_GENOMIC = tr.createNewVocabularyTerm('GENOMIC') +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_GENOMIC.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_GENOMIC.setLabel(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_GENOMIC.setOrdinal(1) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.addTerm(vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_GENOMIC) + +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_NONGENOMIC = tr.createNewVocabularyTerm('NON-GENOMIC') +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_NONGENOMIC.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_NONGENOMIC.setLabel(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_NONGENOMIC.setOrdinal(2) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.addTerm(vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_NONGENOMIC) + +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_SYNTHETIC = tr.createNewVocabularyTerm('SYNTHETIC') +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_SYNTHETIC.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_SYNTHETIC.setLabel(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_SYNTHETIC.setOrdinal(3) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.addTerm(vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_SYNTHETIC) + +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_VIRAL = tr.createNewVocabularyTerm('VIRAL') +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_VIRAL.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_VIRAL.setLabel(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_VIRAL.setOrdinal(4) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.addTerm(vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_VIRAL) + +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_RNA = tr.createNewVocabularyTerm('RNA') +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_RNA.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_RNA.setLabel(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_RNA.setOrdinal(5) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.addTerm(vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_RNA) + +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_OTHER.setDescription(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_OTHER.setLabel(None) +vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_OTHER.setOrdinal(6) +vocabulary_SAMPLE_LIBRARY_SOURCE_VOC.addTerm(vocabulary_term_SAMPLE_LIBRARY_SOURCE_VOC_OTHER) + +vocabulary_SAMPLE_LIBRARY_STRATEGY = tr.getOrCreateNewVocabulary('SAMPLE_LIBRARY_STRATEGY') +vocabulary_SAMPLE_LIBRARY_STRATEGY.setDescription('Sequencing technique for this library.') +vocabulary_SAMPLE_LIBRARY_STRATEGY.setUrlTemplate(None) +vocabulary_SAMPLE_LIBRARY_STRATEGY.setManagedInternally(False) +vocabulary_SAMPLE_LIBRARY_STRATEGY.setInternalNamespace(False) +vocabulary_SAMPLE_LIBRARY_STRATEGY.setChosenFromList(True) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CHIPSEQ = tr.createNewVocabularyTerm('CHIP-SEQ') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CHIPSEQ.setDescription('Direct sequencing of chromatin immunoprecipitates') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CHIPSEQ.setLabel('ChIP-Seq') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CHIPSEQ.setOrdinal(1) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CHIPSEQ) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_RNASEQ = tr.createNewVocabularyTerm('RNA-SEQ') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_RNASEQ.setDescription('RNA sequencing') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_RNASEQ.setLabel('RNA-Seq') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_RNASEQ.setOrdinal(2) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_RNASEQ) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MEDIPSEQ = tr.createNewVocabularyTerm('MEDIP-SEQ') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MEDIPSEQ.setDescription('Methylated DNA immunoprecipitation sequencing') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MEDIPSEQ.setLabel('MeDIP-Seq') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MEDIPSEQ.setOrdinal(3) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MEDIPSEQ) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MNASESEQ = tr.createNewVocabularyTerm('MNASE-SEQ') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MNASESEQ.setDescription('Direct sequencing following MNase digestion') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MNASESEQ.setLabel('MNase-Seq') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MNASESEQ.setOrdinal(4) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MNASESEQ) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MRESEQ = tr.createNewVocabularyTerm('MRE-SEQ') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MRESEQ.setDescription('Methylation-sensitive restriction enzyme sequencing') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MRESEQ.setLabel('MRE-Seq') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MRESEQ.setOrdinal(5) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_MRESEQ) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_EST = tr.createNewVocabularyTerm('EST') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_EST.setDescription('Single pass sequencing of cDNA templates') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_EST.setLabel('EST') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_EST.setOrdinal(6) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_EST) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FLCDNA = tr.createNewVocabularyTerm('FL-CDNA') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FLCDNA.setDescription('Full-length sequencing of cDNA templates') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FLCDNA.setLabel('FL-cDNA') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FLCDNA.setOrdinal(7) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FLCDNA) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CTS = tr.createNewVocabularyTerm('CTS') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CTS.setDescription('Concatenated Tag Sequencing') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CTS.setLabel('CTS') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CTS.setOrdinal(8) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CTS) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_BARCODE = tr.createNewVocabularyTerm('BARCODE') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_BARCODE.setDescription('Sequencing of products that have been tagged with a short identifying sequence (barcode)') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_BARCODE.setLabel('BARCODE') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_BARCODE.setOrdinal(9) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_BARCODE) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONEEND = tr.createNewVocabularyTerm('CLONEEND') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONEEND.setDescription('"Clone end (5\', 3\', or both) sequencing"') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONEEND.setLabel('CLONEEND') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONEEND.setOrdinal(10) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONEEND) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WGS = tr.createNewVocabularyTerm('WGS') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WGS.setDescription('Whole genome shotgun') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WGS.setLabel('WGS') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WGS.setOrdinal(11) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WGS) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WCS = tr.createNewVocabularyTerm('WCS') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WCS.setDescription('Whole chromosome (or other replicon) shotgun') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WCS.setLabel('WCS') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WCS.setOrdinal(12) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_WCS) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONE = tr.createNewVocabularyTerm('CLONE') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONE.setDescription('Genomic clone based (hierarchical) sequencing') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONE.setLabel('CLONE') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONE.setOrdinal(13) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_CLONE) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_POOLCLONE = tr.createNewVocabularyTerm('POOLCLONE') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_POOLCLONE.setDescription('Shotgun of pooled clones (usually BACs and Fosmids)') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_POOLCLONE.setLabel('POOLCLONE') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_POOLCLONE.setOrdinal(14) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_POOLCLONE) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_AMPLICON = tr.createNewVocabularyTerm('AMPLICON') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_AMPLICON.setDescription('Sequencing of overlapping or distinct PCR or RT-PCR products') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_AMPLICON.setLabel('AMPLICON') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_AMPLICON.setOrdinal(15) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_AMPLICON) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FINISHING = tr.createNewVocabularyTerm('FINISHING') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FINISHING.setDescription('Sequencing intended to finish (close) gaps in existing coverage') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FINISHING.setLabel('FINISHING') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FINISHING.setOrdinal(16) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_FINISHING) + +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_OTHER.setDescription('Library strategy not listed') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_OTHER.setLabel('OTHER') +vocabulary_term_SAMPLE_LIBRARY_STRATEGY_OTHER.setOrdinal(17) +vocabulary_SAMPLE_LIBRARY_STRATEGY.addTerm(vocabulary_term_SAMPLE_LIBRARY_STRATEGY_OTHER) + +vocabulary_SAMPLE_MOLECULE = tr.getOrCreateNewVocabulary('SAMPLE_MOLECULE') +vocabulary_SAMPLE_MOLECULE.setDescription(None) +vocabulary_SAMPLE_MOLECULE.setUrlTemplate(None) +vocabulary_SAMPLE_MOLECULE.setManagedInternally(False) +vocabulary_SAMPLE_MOLECULE.setInternalNamespace(False) +vocabulary_SAMPLE_MOLECULE.setChosenFromList(True) + +vocabulary_term_SAMPLE_MOLECULE_TOTAL_RNA = tr.createNewVocabularyTerm('TOTAL_RNA') +vocabulary_term_SAMPLE_MOLECULE_TOTAL_RNA.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_TOTAL_RNA.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_TOTAL_RNA.setOrdinal(1) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_TOTAL_RNA) + +vocabulary_term_SAMPLE_MOLECULE_POLYA_RNA = tr.createNewVocabularyTerm('POLYA_RNA') +vocabulary_term_SAMPLE_MOLECULE_POLYA_RNA.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_POLYA_RNA.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_POLYA_RNA.setOrdinal(2) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_POLYA_RNA) + +vocabulary_term_SAMPLE_MOLECULE_CYTOPLASMIC_RNA = tr.createNewVocabularyTerm('CYTOPLASMIC_RNA') +vocabulary_term_SAMPLE_MOLECULE_CYTOPLASMIC_RNA.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_CYTOPLASMIC_RNA.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_CYTOPLASMIC_RNA.setOrdinal(3) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_CYTOPLASMIC_RNA) + +vocabulary_term_SAMPLE_MOLECULE_NUCLEAR_RNA = tr.createNewVocabularyTerm('NUCLEAR_RNA') +vocabulary_term_SAMPLE_MOLECULE_NUCLEAR_RNA.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_NUCLEAR_RNA.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_NUCLEAR_RNA.setOrdinal(4) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_NUCLEAR_RNA) + +vocabulary_term_SAMPLE_MOLECULE_GENOMIC_DNA = tr.createNewVocabularyTerm('GENOMIC_DNA') +vocabulary_term_SAMPLE_MOLECULE_GENOMIC_DNA.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_GENOMIC_DNA.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_GENOMIC_DNA.setOrdinal(5) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_GENOMIC_DNA) + +vocabulary_term_SAMPLE_MOLECULE_PROTEIN = tr.createNewVocabularyTerm('PROTEIN') +vocabulary_term_SAMPLE_MOLECULE_PROTEIN.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_PROTEIN.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_PROTEIN.setOrdinal(6) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_PROTEIN) + +vocabulary_term_SAMPLE_MOLECULE_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_SAMPLE_MOLECULE_OTHER.setDescription(None) +vocabulary_term_SAMPLE_MOLECULE_OTHER.setLabel(None) +vocabulary_term_SAMPLE_MOLECULE_OTHER.setOrdinal(7) +vocabulary_SAMPLE_MOLECULE.addTerm(vocabulary_term_SAMPLE_MOLECULE_OTHER) + +vocabulary_SAMPLE_TYPE = tr.getOrCreateNewVocabulary('SAMPLE_TYPE') +vocabulary_SAMPLE_TYPE.setDescription('Type of sample delivered by the customer') +vocabulary_SAMPLE_TYPE.setUrlTemplate(None) +vocabulary_SAMPLE_TYPE.setManagedInternally(False) +vocabulary_SAMPLE_TYPE.setInternalNamespace(False) +vocabulary_SAMPLE_TYPE.setChosenFromList(True) + +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA = tr.createNewVocabularyTerm('GENOMIC_DNA') +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setOrdinal(1) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA) + +vocabulary_term_SAMPLE_TYPE_SMALL_RNA = tr.createNewVocabularyTerm('SMALL_RNA') +vocabulary_term_SAMPLE_TYPE_SMALL_RNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_SMALL_RNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_SMALL_RNA.setOrdinal(2) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_SMALL_RNA) + +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA = tr.createNewVocabularyTerm('TOTAL_RNA') +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setOrdinal(3) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_TOTAL_RNA) + +vocabulary_term_SAMPLE_TYPE_CHIP = tr.createNewVocabularyTerm('CHIP') +vocabulary_term_SAMPLE_TYPE_CHIP.setDescription(None) +vocabulary_term_SAMPLE_TYPE_CHIP.setLabel(None) +vocabulary_term_SAMPLE_TYPE_CHIP.setOrdinal(4) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_CHIP) + +vocabulary_term_SAMPLE_TYPE_VIRAL = tr.createNewVocabularyTerm('VIRAL') +vocabulary_term_SAMPLE_TYPE_VIRAL.setDescription(None) +vocabulary_term_SAMPLE_TYPE_VIRAL.setLabel(None) +vocabulary_term_SAMPLE_TYPE_VIRAL.setOrdinal(5) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_VIRAL) + +vocabulary_term_SAMPLE_TYPE_SYNTHETIC = tr.createNewVocabularyTerm('SYNTHETIC') +vocabulary_term_SAMPLE_TYPE_SYNTHETIC.setDescription(None) +vocabulary_term_SAMPLE_TYPE_SYNTHETIC.setLabel(None) +vocabulary_term_SAMPLE_TYPE_SYNTHETIC.setOrdinal(6) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_SYNTHETIC) + +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA = tr.createNewVocabularyTerm('FRAGMENTED_GENOMIC_DNA') +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setOrdinal(7) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA) + +vocabulary_term_SAMPLE_TYPE_MRNA = tr.createNewVocabularyTerm('MRNA') +vocabulary_term_SAMPLE_TYPE_MRNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_MRNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_MRNA.setOrdinal(8) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_MRNA) + +vocabulary_term_SAMPLE_TYPE_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_SAMPLE_TYPE_OTHER.setDescription(None) +vocabulary_term_SAMPLE_TYPE_OTHER.setLabel(None) +vocabulary_term_SAMPLE_TYPE_OTHER.setOrdinal(9) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_OTHER) + +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY = tr.createNewVocabularyTerm('PROCESSED_DNA_LIBRARY') +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setDescription(None) +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setLabel(None) +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setOrdinal(10) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY) + +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP = tr.createNewVocabularyTerm('BISULFITE_CHIP') +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setDescription(None) +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setLabel(None) +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setOrdinal(11) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP) + +vocabulary_term_SAMPLE_TYPE_NONGENOMIC = tr.createNewVocabularyTerm('NON-GENOMIC') +vocabulary_term_SAMPLE_TYPE_NONGENOMIC.setDescription(None) +vocabulary_term_SAMPLE_TYPE_NONGENOMIC.setLabel(None) +vocabulary_term_SAMPLE_TYPE_NONGENOMIC.setOrdinal(12) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_NONGENOMIC) + +vocabulary_SBS_SEQUENCING_KIT_VERSION = tr.getOrCreateNewVocabulary('SBS_SEQUENCING_KIT_VERSION') +vocabulary_SBS_SEQUENCING_KIT_VERSION.setDescription('Version of the Sequencing by Synthesis (SBS) Kit') +vocabulary_SBS_SEQUENCING_KIT_VERSION.setUrlTemplate(None) +vocabulary_SBS_SEQUENCING_KIT_VERSION.setManagedInternally(False) +vocabulary_SBS_SEQUENCING_KIT_VERSION.setInternalNamespace(False) +vocabulary_SBS_SEQUENCING_KIT_VERSION.setChosenFromList(True) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5 = tr.createNewVocabularyTerm('TRUSEQ_V5') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setLabel('TruSeq v5') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setOrdinal(1) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5 = tr.createNewVocabularyTerm('V5') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setLabel(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setOrdinal(2) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4 = tr.createNewVocabularyTerm('V4') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setLabel(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setOrdinal(3) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3 = tr.createNewVocabularyTerm('V3') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setLabel(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setOrdinal(4) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3 = tr.createNewVocabularyTerm('SBS_HS_V3') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setLabel('TruSeq SBS HS v3') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setOrdinal(5) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3) + +vocabulary_SCS_PROTOCOL_VERSION = tr.getOrCreateNewVocabulary('SCS_PROTOCOL_VERSION') +vocabulary_SCS_PROTOCOL_VERSION.setDescription('THE Illumina protocol') +vocabulary_SCS_PROTOCOL_VERSION.setUrlTemplate(None) +vocabulary_SCS_PROTOCOL_VERSION.setManagedInternally(False) +vocabulary_SCS_PROTOCOL_VERSION.setInternalNamespace(False) +vocabulary_SCS_PROTOCOL_VERSION.setChosenFromList(True) + +vocabulary_term_SCS_PROTOCOL_VERSION_V8 = tr.createNewVocabularyTerm('V8') +vocabulary_term_SCS_PROTOCOL_VERSION_V8.setDescription(None) +vocabulary_term_SCS_PROTOCOL_VERSION_V8.setLabel(None) +vocabulary_term_SCS_PROTOCOL_VERSION_V8.setOrdinal(1) +vocabulary_SCS_PROTOCOL_VERSION.addTerm(vocabulary_term_SCS_PROTOCOL_VERSION_V8) + +vocabulary_term_SCS_PROTOCOL_VERSION_V6 = tr.createNewVocabularyTerm('V6') +vocabulary_term_SCS_PROTOCOL_VERSION_V6.setDescription(None) +vocabulary_term_SCS_PROTOCOL_VERSION_V6.setLabel(None) +vocabulary_term_SCS_PROTOCOL_VERSION_V6.setOrdinal(2) +vocabulary_SCS_PROTOCOL_VERSION.addTerm(vocabulary_term_SCS_PROTOCOL_VERSION_V6) + +vocabulary_term_SCS_PROTOCOL_VERSION_V7 = tr.createNewVocabularyTerm('V7') +vocabulary_term_SCS_PROTOCOL_VERSION_V7.setDescription(None) +vocabulary_term_SCS_PROTOCOL_VERSION_V7.setLabel(None) +vocabulary_term_SCS_PROTOCOL_VERSION_V7.setOrdinal(3) +vocabulary_SCS_PROTOCOL_VERSION.addTerm(vocabulary_term_SCS_PROTOCOL_VERSION_V7) + +vocabulary_SCS_SOFTWARE_VERSION = tr.getOrCreateNewVocabulary('SCS_SOFTWARE_VERSION') +vocabulary_SCS_SOFTWARE_VERSION.setDescription('Software version of the Sequencing PC attached to the GA') +vocabulary_SCS_SOFTWARE_VERSION.setUrlTemplate(None) +vocabulary_SCS_SOFTWARE_VERSION.setManagedInternally(False) +vocabulary_SCS_SOFTWARE_VERSION.setInternalNamespace(False) +vocabulary_SCS_SOFTWARE_VERSION.setChosenFromList(True) + +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_1515 = tr.createNewVocabularyTerm('HCS_1.5.15') +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_1515.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_1515.setLabel('HCS 1.5.15/1.13.48') +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_1515.setOrdinal(1) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_HCS_1515) + +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_145 = tr.createNewVocabularyTerm('HCS_1.4.5') +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_145.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_145.setLabel('HCS 1.4.5/RTA 1.12.4') +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_145.setOrdinal(2) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_HCS_145) + +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_14 = tr.createNewVocabularyTerm('HCS_1.4') +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_14.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_14.setLabel('HCS 1.4/RTA 1.12') +vocabulary_term_SCS_SOFTWARE_VERSION_HCS_14.setOrdinal(3) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_HCS_14) + +vocabulary_term_SCS_SOFTWARE_VERSION_210 = tr.createNewVocabularyTerm('2.10') +vocabulary_term_SCS_SOFTWARE_VERSION_210.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_210.setLabel('2.10/RTA 1.13.48') +vocabulary_term_SCS_SOFTWARE_VERSION_210.setOrdinal(4) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_210) + +vocabulary_term_SCS_SOFTWARE_VERSION_29 = tr.createNewVocabularyTerm('2.9') +vocabulary_term_SCS_SOFTWARE_VERSION_29.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_29.setLabel('2.9/RTA2.9') +vocabulary_term_SCS_SOFTWARE_VERSION_29.setOrdinal(5) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_29) + +vocabulary_term_SCS_SOFTWARE_VERSION_28 = tr.createNewVocabularyTerm('2.8') +vocabulary_term_SCS_SOFTWARE_VERSION_28.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_28.setLabel('2.8/RTA 1.8') +vocabulary_term_SCS_SOFTWARE_VERSION_28.setOrdinal(6) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_28) + +vocabulary_term_SCS_SOFTWARE_VERSION_26 = tr.createNewVocabularyTerm('2.6') +vocabulary_term_SCS_SOFTWARE_VERSION_26.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_26.setLabel('2.6/RTA 1.6 (no longer in use)') +vocabulary_term_SCS_SOFTWARE_VERSION_26.setOrdinal(7) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_26) + +vocabulary_term_SCS_SOFTWARE_VERSION_25 = tr.createNewVocabularyTerm('2.5') +vocabulary_term_SCS_SOFTWARE_VERSION_25.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_25.setLabel('2.5 (no longer in use)') +vocabulary_term_SCS_SOFTWARE_VERSION_25.setOrdinal(8) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_25) + +vocabulary_term_SCS_SOFTWARE_VERSION_24 = tr.createNewVocabularyTerm('2.4') +vocabulary_term_SCS_SOFTWARE_VERSION_24.setDescription(None) +vocabulary_term_SCS_SOFTWARE_VERSION_24.setLabel('2.4 (no longer in use)') +vocabulary_term_SCS_SOFTWARE_VERSION_24.setOrdinal(9) +vocabulary_SCS_SOFTWARE_VERSION.addTerm(vocabulary_term_SCS_SOFTWARE_VERSION_24) + +vocabulary_SEQUENCER = tr.getOrCreateNewVocabulary('SEQUENCER') +vocabulary_SEQUENCER.setDescription('Which Sequencer was used?') +vocabulary_SEQUENCER.setUrlTemplate(None) +vocabulary_SEQUENCER.setManagedInternally(False) +vocabulary_SEQUENCER.setInternalNamespace(False) +vocabulary_SEQUENCER.setChosenFromList(True) + +vocabulary_term_SEQUENCER_HISEQ2500 = tr.createNewVocabularyTerm('HISEQ2500') +vocabulary_term_SEQUENCER_HISEQ2500.setDescription(None) +vocabulary_term_SEQUENCER_HISEQ2500.setLabel(None) +vocabulary_term_SEQUENCER_HISEQ2500.setOrdinal(3) +vocabulary_SEQUENCER.addTerm(vocabulary_term_SEQUENCER_HISEQ2500) + +vocabulary_term_SEQUENCER_HISEQ2000 = tr.createNewVocabularyTerm('HISEQ2000') +vocabulary_term_SEQUENCER_HISEQ2000.setDescription(None) +vocabulary_term_SEQUENCER_HISEQ2000.setLabel(None) +vocabulary_term_SEQUENCER_HISEQ2000.setOrdinal(4) +vocabulary_SEQUENCER.addTerm(vocabulary_term_SEQUENCER_HISEQ2000) + +vocabulary_SEQUENCING_APPLICATION = tr.getOrCreateNewVocabulary('SEQUENCING_APPLICATION') +vocabulary_SEQUENCING_APPLICATION.setDescription('Type of experiment of the High Throughput Sequencing applications') +vocabulary_SEQUENCING_APPLICATION.setUrlTemplate(None) +vocabulary_SEQUENCING_APPLICATION.setManagedInternally(False) +vocabulary_SEQUENCING_APPLICATION.setInternalNamespace(False) +vocabulary_SEQUENCING_APPLICATION.setChosenFromList(True) + +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ = tr.createNewVocabularyTerm('SMALL_RNA_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setOrdinal(1) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ) + +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ = tr.createNewVocabularyTerm('RNA_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setOrdinal(2) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ) + +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ = tr.createNewVocabularyTerm('GENOMIC_DNA_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setOrdinal(3) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ) + +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ = tr.createNewVocabularyTerm('CHIP_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setOrdinal(4) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ) + +exp_type_HT_SEQUENCING = tr.getOrCreateNewExperimentType('HT_SEQUENCING') +exp_type_HT_SEQUENCING.setDescription('High Throughput Sequencing (e.g. Illumina HiSeq, Illumina GA)') + +samp_type_ILLUMINA_FLOW_CELL = tr.getOrCreateNewSampleType('ILLUMINA_FLOW_CELL') +samp_type_ILLUMINA_FLOW_CELL.setDescription('Container of ILLUMINA_FLOW_LANES') +samp_type_ILLUMINA_FLOW_CELL.setListable(True) +samp_type_ILLUMINA_FLOW_CELL.setShowContainer(False) +samp_type_ILLUMINA_FLOW_CELL.setShowParents(False) +samp_type_ILLUMINA_FLOW_CELL.setSubcodeUnique(False) +samp_type_ILLUMINA_FLOW_CELL.setAutoGeneratedCode(False) +samp_type_ILLUMINA_FLOW_CELL.setGeneratedCodePrefix('FLOWCELL-') + +samp_type_ILLUMINA_FLOW_LANE = tr.getOrCreateNewSampleType('ILLUMINA_FLOW_LANE') +samp_type_ILLUMINA_FLOW_LANE.setDescription('Child of LIBRARY or POOL') +samp_type_ILLUMINA_FLOW_LANE.setListable(True) +samp_type_ILLUMINA_FLOW_LANE.setShowContainer(True) +samp_type_ILLUMINA_FLOW_LANE.setShowParents(True) +samp_type_ILLUMINA_FLOW_LANE.setSubcodeUnique(False) +samp_type_ILLUMINA_FLOW_LANE.setAutoGeneratedCode(False) +samp_type_ILLUMINA_FLOW_LANE.setGeneratedCodePrefix('FLOWLANE-') + +samp_type_LIBRARY = tr.getOrCreateNewSampleType('LIBRARY') +samp_type_LIBRARY.setDescription('Child of RAW and potential parent of POOL') +samp_type_LIBRARY.setListable(True) +samp_type_LIBRARY.setShowContainer(False) +samp_type_LIBRARY.setShowParents(True) +samp_type_LIBRARY.setSubcodeUnique(False) +samp_type_LIBRARY.setAutoGeneratedCode(True) +samp_type_LIBRARY.setGeneratedCodePrefix('QGF-LIBRARY-') + +samp_type_MASTER = tr.getOrCreateNewSampleType('MASTER') +samp_type_MASTER.setDescription('Sample Type holding Master Data and a parent to RAW') +samp_type_MASTER.setListable(True) +samp_type_MASTER.setShowContainer(False) +samp_type_MASTER.setShowParents(False) +samp_type_MASTER.setSubcodeUnique(False) +samp_type_MASTER.setAutoGeneratedCode(True) +samp_type_MASTER.setGeneratedCodePrefix('QGF-MASTER-') + +samp_type_POOL = tr.getOrCreateNewSampleType('POOL') +samp_type_POOL.setDescription('Child of several LIBRARY samples, used for multiplexing') +samp_type_POOL.setListable(True) +samp_type_POOL.setShowContainer(False) +samp_type_POOL.setShowParents(True) +samp_type_POOL.setSubcodeUnique(False) +samp_type_POOL.setAutoGeneratedCode(True) +samp_type_POOL.setGeneratedCodePrefix('QGF-POOL-') + +samp_type_RAW = tr.getOrCreateNewSampleType('RAW') +samp_type_RAW.setDescription('Child of MASTER') +samp_type_RAW.setListable(True) +samp_type_RAW.setShowContainer(False) +samp_type_RAW.setShowParents(True) +samp_type_RAW.setSubcodeUnique(False) +samp_type_RAW.setAutoGeneratedCode(True) +samp_type_RAW.setGeneratedCodePrefix('QGF-RAW-') + +data_set_type_ALIGNMENT = tr.getOrCreateNewDataSetType('ALIGNMENT') +data_set_type_ALIGNMENT.setDescription('Aligner ouput, ideally bam/sam') +data_set_type_ALIGNMENT.setContainerType(False) + +data_set_type_BASECALL_STATS = tr.getOrCreateNewDataSetType('BASECALL_STATS') +data_set_type_BASECALL_STATS.setDescription('Base Call Statistics from the Illumina Pipeline (configureBclToFastq.pl)') +data_set_type_BASECALL_STATS.setContainerType(False) + +data_set_type_BIGWIGGLE = tr.getOrCreateNewDataSetType('BIGWIGGLE') +data_set_type_BIGWIGGLE.setDescription('Visualization') +data_set_type_BIGWIGGLE.setContainerType(False) + +data_set_type_ELAND_ALIGNMENT = tr.getOrCreateNewDataSetType('ELAND_ALIGNMENT') +data_set_type_ELAND_ALIGNMENT.setDescription('Illumina Eland Alignment Output') +data_set_type_ELAND_ALIGNMENT.setContainerType(False) + +data_set_type_FASTQ_GZ = tr.getOrCreateNewDataSetType('FASTQ_GZ') +data_set_type_FASTQ_GZ.setDescription('Gzipped Fastq file produced by Casava 1.8+') +data_set_type_FASTQ_GZ.setContainerType(False) + +data_set_type_ILLUMINA_GA_OUTPUT = tr.getOrCreateNewDataSetType('ILLUMINA_GA_OUTPUT') +data_set_type_ILLUMINA_GA_OUTPUT.setDescription('The directory structure as produced by the Illumina GA Pipeline (whatever Illumina spits out)\ ') +data_set_type_ILLUMINA_GA_OUTPUT.setContainerType(False) + +data_set_type_ILLUMINA_HISEQ_OUTPUT = tr.getOrCreateNewDataSetType('ILLUMINA_HISEQ_OUTPUT') +data_set_type_ILLUMINA_HISEQ_OUTPUT.setDescription('HiSeq2000 Output') +data_set_type_ILLUMINA_HISEQ_OUTPUT.setContainerType(False) + +data_set_type_MACS_OUTPUT = tr.getOrCreateNewDataSetType('MACS_OUTPUT') +data_set_type_MACS_OUTPUT.setDescription('MACS Peak Caller output') +data_set_type_MACS_OUTPUT.setContainerType(False) + +data_set_type_QUALITY_JPGS = tr.getOrCreateNewDataSetType('QUALITY_JPGS') +data_set_type_QUALITY_JPGS.setDescription('R generated Quality plots') +data_set_type_QUALITY_JPGS.setContainerType(False) + +data_set_type_QUALITY_PDFS = tr.getOrCreateNewDataSetType('QUALITY_PDFS') +data_set_type_QUALITY_PDFS.setDescription('R generated pdfs showing quality data') +data_set_type_QUALITY_PDFS.setContainerType(False) + +data_set_type_QUALITY_SVG = tr.getOrCreateNewDataSetType('QUALITY_SVG') +data_set_type_QUALITY_SVG.setDescription('R generated Quality plots') +data_set_type_QUALITY_SVG.setContainerType(False) + +data_set_type_RUNINFO = tr.getOrCreateNewDataSetType('RUNINFO') +data_set_type_RUNINFO.setDescription('Run statstics: Status.html and Status_Files folder') +data_set_type_RUNINFO.setContainerType(False) + +data_set_type_THUMBNAILS = tr.getOrCreateNewDataSetType('THUMBNAILS') +data_set_type_THUMBNAILS.setDescription('Thumbnails provided by the Illumina software') +data_set_type_THUMBNAILS.setContainerType(False) + +data_set_type_TSV = tr.getOrCreateNewDataSetType('TSV') +data_set_type_TSV.setDescription('Tab separated files') +data_set_type_TSV.setContainerType(False) + +prop_type_AGILENT_KIT = tr.getOrCreateNewPropertyType('AGILENT_KIT', DataType.CONTROLLEDVOCABULARY) +prop_type_AGILENT_KIT.setLabel('Agilent Kit') +prop_type_AGILENT_KIT.setManagedInternally(False) +prop_type_AGILENT_KIT.setInternalNamespace(False) + +prop_type_AGILENT_KIT.setVocabulary(vocabulary_AGILENT_KIT) + +prop_type_ALIGNMENT_SOFTWARE = tr.getOrCreateNewPropertyType('ALIGNMENT_SOFTWARE', DataType.CONTROLLEDVOCABULARY) +prop_type_ALIGNMENT_SOFTWARE.setLabel('Alignment software') +prop_type_ALIGNMENT_SOFTWARE.setManagedInternally(False) +prop_type_ALIGNMENT_SOFTWARE.setInternalNamespace(False) + +prop_type_ALIGNMENT_SOFTWARE.setVocabulary(vocabulary_ALIGNMENT_SOFTWARE) + +prop_type_ANALYSIS_FINISHED = tr.getOrCreateNewPropertyType('ANALYSIS_FINISHED', DataType.TIMESTAMP) +prop_type_ANALYSIS_FINISHED.setLabel('Analysis finished') +prop_type_ANALYSIS_FINISHED.setManagedInternally(False) +prop_type_ANALYSIS_FINISHED.setInternalNamespace(False) + + +prop_type_BARCODE = tr.getOrCreateNewPropertyType('BARCODE', DataType.CONTROLLEDVOCABULARY) +prop_type_BARCODE.setLabel('Index 1') +prop_type_BARCODE.setManagedInternally(False) +prop_type_BARCODE.setInternalNamespace(False) + +prop_type_BARCODE.setVocabulary(vocabulary_INDEX1) + +prop_type_BARCODES = tr.getOrCreateNewPropertyType('BARCODES', DataType.MULTILINE_VARCHAR) +prop_type_BARCODES.setLabel('Adaptor and Barcodes') +prop_type_BARCODES.setManagedInternally(False) +prop_type_BARCODES.setInternalNamespace(False) + + +prop_type_BARCODE_COMPLEXITY_CHECKER = tr.getOrCreateNewPropertyType('BARCODE_COMPLEXITY_CHECKER', DataType.MULTILINE_VARCHAR) +prop_type_BARCODE_COMPLEXITY_CHECKER.setLabel('Barcode_Complexity_Checker') +prop_type_BARCODE_COMPLEXITY_CHECKER.setManagedInternally(False) +prop_type_BARCODE_COMPLEXITY_CHECKER.setInternalNamespace(False) + + +prop_type_BARCODE_LENGTH = tr.getOrCreateNewPropertyType('BARCODE_LENGTH', DataType.INTEGER) +prop_type_BARCODE_LENGTH.setLabel('Barcode Length (+ recognition site)') +prop_type_BARCODE_LENGTH.setManagedInternally(False) +prop_type_BARCODE_LENGTH.setInternalNamespace(False) + + +prop_type_BAREBACKED = tr.getOrCreateNewPropertyType('BAREBACKED', DataType.BOOLEAN) +prop_type_BAREBACKED.setLabel('Barebacked?') +prop_type_BAREBACKED.setManagedInternally(False) +prop_type_BAREBACKED.setInternalNamespace(False) + + +prop_type_BASESCOVERED = tr.getOrCreateNewPropertyType('BASESCOVERED', DataType.INTEGER) +prop_type_BASESCOVERED.setLabel('bases Covered') +prop_type_BASESCOVERED.setManagedInternally(False) +prop_type_BASESCOVERED.setInternalNamespace(False) + + +prop_type_BIOLOGICAL_SAMPLE_ARRIVED = tr.getOrCreateNewPropertyType('BIOLOGICAL_SAMPLE_ARRIVED', DataType.TIMESTAMP) +prop_type_BIOLOGICAL_SAMPLE_ARRIVED.setLabel('Arrival Date of Biological Sample') +prop_type_BIOLOGICAL_SAMPLE_ARRIVED.setManagedInternally(False) +prop_type_BIOLOGICAL_SAMPLE_ARRIVED.setInternalNamespace(False) + + +prop_type_CALCLUATED_EXAMPLE = tr.getOrCreateNewPropertyType('CALCLUATED_EXAMPLE', DataType.REAL) +prop_type_CALCLUATED_EXAMPLE.setLabel('Calcluated_example') +prop_type_CALCLUATED_EXAMPLE.setManagedInternally(False) +prop_type_CALCLUATED_EXAMPLE.setInternalNamespace(False) + + +prop_type_CASAVA_VERSION = tr.getOrCreateNewPropertyType('CASAVA_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_CASAVA_VERSION.setLabel('Casava Version') +prop_type_CASAVA_VERSION.setManagedInternally(False) +prop_type_CASAVA_VERSION.setInternalNamespace(False) + +prop_type_CASAVA_VERSION.setVocabulary(vocabulary_CASAVA_VERSION) + +prop_type_CELL_PLASTICITY_SYSTEMSX = tr.getOrCreateNewPropertyType('CELL_PLASTICITY_SYSTEMSX', DataType.BOOLEAN) +prop_type_CELL_PLASTICITY_SYSTEMSX.setLabel('Cell Plasticity (SystemsX)') +prop_type_CELL_PLASTICITY_SYSTEMSX.setManagedInternally(False) +prop_type_CELL_PLASTICITY_SYSTEMSX.setInternalNamespace(False) + + +prop_type_CHROMCOUNT = tr.getOrCreateNewPropertyType('CHROMCOUNT', DataType.INTEGER) +prop_type_CHROMCOUNT.setLabel('chrom Count') +prop_type_CHROMCOUNT.setManagedInternally(False) +prop_type_CHROMCOUNT.setInternalNamespace(False) + + +prop_type_CLUSTER_GENERATION_KIT_VERSION = tr.getOrCreateNewPropertyType('CLUSTER_GENERATION_KIT_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_CLUSTER_GENERATION_KIT_VERSION.setLabel('CS Generation Kit Version') +prop_type_CLUSTER_GENERATION_KIT_VERSION.setManagedInternally(False) +prop_type_CLUSTER_GENERATION_KIT_VERSION.setInternalNamespace(False) + +prop_type_CLUSTER_GENERATION_KIT_VERSION.setVocabulary(vocabulary_CLUSTER_GENERATION_KIT_VERSION) + +prop_type_CLUSTER_STATION = tr.getOrCreateNewPropertyType('CLUSTER_STATION', DataType.CONTROLLEDVOCABULARY) +prop_type_CLUSTER_STATION.setLabel('Cluster Station') +prop_type_CLUSTER_STATION.setManagedInternally(False) +prop_type_CLUSTER_STATION.setInternalNamespace(False) + +prop_type_CLUSTER_STATION.setVocabulary(vocabulary_CLUSTER_STATION) + +prop_type_CLUSTER_STATION_SOFTWARE_VERSION = tr.getOrCreateNewPropertyType('CLUSTER_STATION_SOFTWARE_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_CLUSTER_STATION_SOFTWARE_VERSION.setLabel('CS Software version') +prop_type_CLUSTER_STATION_SOFTWARE_VERSION.setManagedInternally(False) +prop_type_CLUSTER_STATION_SOFTWARE_VERSION.setInternalNamespace(False) + +prop_type_CLUSTER_STATION_SOFTWARE_VERSION.setVocabulary(vocabulary_CLUSTER_STATION_SOFTWARE_VERSION) + +prop_type_CONCENTRATION_FLOWLANE = tr.getOrCreateNewPropertyType('CONCENTRATION_FLOWLANE', DataType.REAL) +prop_type_CONCENTRATION_FLOWLANE.setLabel('Concentration in flow lane [pM]') +prop_type_CONCENTRATION_FLOWLANE.setManagedInternally(False) +prop_type_CONCENTRATION_FLOWLANE.setInternalNamespace(False) + + +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA = tr.getOrCreateNewPropertyType('CONCENTRATION_ORIGINAL_ILLUMINA', DataType.REAL) +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setLabel(u'Concentration (original) [ng/\u03bcl]') +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setManagedInternally(False) +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setInternalNamespace(False) + + +prop_type_CONCENTRATION_PREPARED_ILLUMINA = tr.getOrCreateNewPropertyType('CONCENTRATION_PREPARED_ILLUMINA', DataType.REAL) +prop_type_CONCENTRATION_PREPARED_ILLUMINA.setLabel(u'Concentration (prepared) [ng/\u03bcl]') +prop_type_CONCENTRATION_PREPARED_ILLUMINA.setManagedInternally(False) +prop_type_CONCENTRATION_PREPARED_ILLUMINA.setInternalNamespace(False) + + +prop_type_CONCENTRATION_TOTAL = tr.getOrCreateNewPropertyType('CONCENTRATION_TOTAL', DataType.INTEGER) +prop_type_CONCENTRATION_TOTAL.setLabel(u'DNA concentration of library (ng/\u03bcl)') +prop_type_CONCENTRATION_TOTAL.setManagedInternally(False) +prop_type_CONCENTRATION_TOTAL.setInternalNamespace(False) + + +prop_type_CONC_IF_SAMPLE_PROCESSED_DNA_LIBRARY = tr.getOrCreateNewPropertyType('CONC_IF_SAMPLE_PROCESSED_DNA_LIBRARY', DataType.INTEGER) +prop_type_CONC_IF_SAMPLE_PROCESSED_DNA_LIBRARY.setLabel('Conc. if sample="proc. DNA library" (nM)') +prop_type_CONC_IF_SAMPLE_PROCESSED_DNA_LIBRARY.setManagedInternally(False) +prop_type_CONC_IF_SAMPLE_PROCESSED_DNA_LIBRARY.setInternalNamespace(False) + + +prop_type_CONTACT_PERSON_EMAIL = tr.getOrCreateNewPropertyType('CONTACT_PERSON_EMAIL', DataType.VARCHAR) +prop_type_CONTACT_PERSON_EMAIL.setLabel('Email of Contact Person') +prop_type_CONTACT_PERSON_EMAIL.setManagedInternally(False) +prop_type_CONTACT_PERSON_EMAIL.setInternalNamespace(False) + + +prop_type_CONTACT_PERSON_NAME = tr.getOrCreateNewPropertyType('CONTACT_PERSON_NAME', DataType.VARCHAR) +prop_type_CONTACT_PERSON_NAME.setLabel('Name of Contact Person') +prop_type_CONTACT_PERSON_NAME.setManagedInternally(False) +prop_type_CONTACT_PERSON_NAME.setInternalNamespace(False) + + +prop_type_CONTROL_LANE = tr.getOrCreateNewPropertyType('CONTROL_LANE', DataType.CONTROLLEDVOCABULARY) +prop_type_CONTROL_LANE.setLabel('Control Lane') +prop_type_CONTROL_LANE.setManagedInternally(False) +prop_type_CONTROL_LANE.setInternalNamespace(False) + +prop_type_CONTROL_LANE.setVocabulary(vocabulary_CONTROL_LANE) + +prop_type_CREATED_ON_CS = tr.getOrCreateNewPropertyType('CREATED_ON_CS', DataType.TIMESTAMP) +prop_type_CREATED_ON_CS.setLabel('Clustering date') +prop_type_CREATED_ON_CS.setManagedInternally(False) +prop_type_CREATED_ON_CS.setInternalNamespace(False) + + +prop_type_CS_PROTOCOL_VERSION = tr.getOrCreateNewPropertyType('CS_PROTOCOL_VERSION', DataType.VARCHAR) +prop_type_CS_PROTOCOL_VERSION.setLabel('CS Protocol Version') +prop_type_CS_PROTOCOL_VERSION.setManagedInternally(False) +prop_type_CS_PROTOCOL_VERSION.setInternalNamespace(False) + + +prop_type_CYCLES = tr.getOrCreateNewPropertyType('CYCLES', DataType.INTEGER) +prop_type_CYCLES.setLabel('Number of Cycles') +prop_type_CYCLES.setManagedInternally(False) +prop_type_CYCLES.setInternalNamespace(False) + + +prop_type_CYCLES_REQUESTED_BY_CUSTOMER = tr.getOrCreateNewPropertyType('CYCLES_REQUESTED_BY_CUSTOMER', DataType.CONTROLLEDVOCABULARY) +prop_type_CYCLES_REQUESTED_BY_CUSTOMER.setLabel('Cycles') +prop_type_CYCLES_REQUESTED_BY_CUSTOMER.setManagedInternally(False) +prop_type_CYCLES_REQUESTED_BY_CUSTOMER.setInternalNamespace(False) + +prop_type_CYCLES_REQUESTED_BY_CUSTOMER.setVocabulary(vocabulary_CYCLES) + +prop_type_DATA_TRANSFERRED = tr.getOrCreateNewPropertyType('DATA_TRANSFERRED', DataType.TIMESTAMP) +prop_type_DATA_TRANSFERRED.setLabel('Data transferred') +prop_type_DATA_TRANSFERRED.setManagedInternally(False) +prop_type_DATA_TRANSFERRED.setInternalNamespace(False) + + +prop_type_DESCRIPTION = tr.getOrCreateNewPropertyType('DESCRIPTION', DataType.VARCHAR) +prop_type_DESCRIPTION.setLabel('Description') +prop_type_DESCRIPTION.setManagedInternally(False) +prop_type_DESCRIPTION.setInternalNamespace(False) + + +prop_type_DNA_CONCENTRATION_OF_LIBRARY = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_OF_LIBRARY', DataType.INTEGER) +prop_type_DNA_CONCENTRATION_OF_LIBRARY.setLabel('DNA concentration of library (nM)') +prop_type_DNA_CONCENTRATION_OF_LIBRARY.setManagedInternally(False) +prop_type_DNA_CONCENTRATION_OF_LIBRARY.setInternalNamespace(False) + + +prop_type_END_TYPE = tr.getOrCreateNewPropertyType('END_TYPE', DataType.CONTROLLEDVOCABULARY) +prop_type_END_TYPE.setLabel('Paired End / Single Read') +prop_type_END_TYPE.setManagedInternally(False) +prop_type_END_TYPE.setInternalNamespace(False) + +prop_type_END_TYPE.setVocabulary(vocabulary_END_TYPE) + +prop_type_EXPERIMENT_DESIGN = tr.getOrCreateNewPropertyType('EXPERIMENT_DESIGN', DataType.CONTROLLEDVOCABULARY) +prop_type_EXPERIMENT_DESIGN.setLabel('Experiment Design') +prop_type_EXPERIMENT_DESIGN.setManagedInternally(False) +prop_type_EXPERIMENT_DESIGN.setInternalNamespace(False) + +prop_type_EXPERIMENT_DESIGN.setVocabulary(vocabulary_EXPERIMENT_DESIGN) + +prop_type_EXTERNAL_SAMPLE_NAME = tr.getOrCreateNewPropertyType('EXTERNAL_SAMPLE_NAME', DataType.VARCHAR) +prop_type_EXTERNAL_SAMPLE_NAME.setLabel('External Sample Name') +prop_type_EXTERNAL_SAMPLE_NAME.setManagedInternally(False) +prop_type_EXTERNAL_SAMPLE_NAME.setInternalNamespace(False) + + +prop_type_FLOWCELLTYPE = tr.getOrCreateNewPropertyType('FLOWCELLTYPE', DataType.VARCHAR) +prop_type_FLOWCELLTYPE.setLabel('Flow Cell Type') +prop_type_FLOWCELLTYPE.setManagedInternally(False) +prop_type_FLOWCELLTYPE.setInternalNamespace(False) + + +prop_type_FLOW_CELL_SEQUENCED_ON = tr.getOrCreateNewPropertyType('FLOW_CELL_SEQUENCED_ON', DataType.TIMESTAMP) +prop_type_FLOW_CELL_SEQUENCED_ON.setLabel('Sequencing date') +prop_type_FLOW_CELL_SEQUENCED_ON.setManagedInternally(False) +prop_type_FLOW_CELL_SEQUENCED_ON.setInternalNamespace(False) + + +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA = tr.getOrCreateNewPropertyType('FRAGMENT_SIZE_PREPARED_ILLUMINA', DataType.INTEGER) +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setLabel('Fragment Size (prepared) [base (pairs)]') +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setManagedInternally(False) +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setInternalNamespace(False) + + +prop_type_ILLUMINA_PIPELINE_VERSION = tr.getOrCreateNewPropertyType('ILLUMINA_PIPELINE_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_ILLUMINA_PIPELINE_VERSION.setLabel('Pipeline Version') +prop_type_ILLUMINA_PIPELINE_VERSION.setManagedInternally(False) +prop_type_ILLUMINA_PIPELINE_VERSION.setInternalNamespace(False) + +prop_type_ILLUMINA_PIPELINE_VERSION.setVocabulary(vocabulary_PIPELINE_VERSION) + +prop_type_INDEX2 = tr.getOrCreateNewPropertyType('INDEX2', DataType.CONTROLLEDVOCABULARY) +prop_type_INDEX2.setLabel('Index 2') +prop_type_INDEX2.setManagedInternally(False) +prop_type_INDEX2.setInternalNamespace(False) + +prop_type_INDEX2.setVocabulary(vocabulary_INDEX2) + +prop_type_INDEXREAD = tr.getOrCreateNewPropertyType('INDEXREAD', DataType.INTEGER) +prop_type_INDEXREAD.setLabel('Length of Index Read1') +prop_type_INDEXREAD.setManagedInternally(False) +prop_type_INDEXREAD.setInternalNamespace(False) + + +prop_type_INDEXREAD2 = tr.getOrCreateNewPropertyType('INDEXREAD2', DataType.INTEGER) +prop_type_INDEXREAD2.setLabel('Length of Index Read2') +prop_type_INDEXREAD2.setManagedInternally(False) +prop_type_INDEXREAD2.setInternalNamespace(False) + + +prop_type_INVOICE = tr.getOrCreateNewPropertyType('INVOICE', DataType.BOOLEAN) +prop_type_INVOICE.setLabel('Invoice sent?') +prop_type_INVOICE.setManagedInternally(False) +prop_type_INVOICE.setInternalNamespace(False) + + +prop_type_ISCOMPRESSED = tr.getOrCreateNewPropertyType('ISCOMPRESSED', DataType.BOOLEAN) +prop_type_ISCOMPRESSED.setLabel('Is Compressed') +prop_type_ISCOMPRESSED.setManagedInternally(False) +prop_type_ISCOMPRESSED.setInternalNamespace(False) + + +prop_type_ISSUED_COMMAND = tr.getOrCreateNewPropertyType('ISSUED_COMMAND', DataType.MULTILINE_VARCHAR) +prop_type_ISSUED_COMMAND.setLabel('Issued Command') +prop_type_ISSUED_COMMAND.setManagedInternally(False) +prop_type_ISSUED_COMMAND.setInternalNamespace(False) + + +prop_type_ISSWAPPED = tr.getOrCreateNewPropertyType('ISSWAPPED', DataType.INTEGER) +prop_type_ISSWAPPED.setLabel('Is byte swapped') +prop_type_ISSWAPPED.setManagedInternally(False) +prop_type_ISSWAPPED.setInternalNamespace(False) + + +prop_type_KIT = tr.getOrCreateNewPropertyType('KIT', DataType.CONTROLLEDVOCABULARY) +prop_type_KIT.setLabel('Library preparation kit') +prop_type_KIT.setManagedInternally(False) +prop_type_KIT.setInternalNamespace(False) + +prop_type_KIT.setVocabulary(vocabulary_KIT) + +prop_type_KIT_ARRIVED = tr.getOrCreateNewPropertyType('KIT_ARRIVED', DataType.TIMESTAMP) +prop_type_KIT_ARRIVED.setLabel('Kit arrived') +prop_type_KIT_ARRIVED.setManagedInternally(False) +prop_type_KIT_ARRIVED.setInternalNamespace(False) + + +prop_type_KIT_PREPARED = tr.getOrCreateNewPropertyType('KIT_PREPARED', DataType.TIMESTAMP) +prop_type_KIT_PREPARED.setLabel('Sample processed') +prop_type_KIT_PREPARED.setManagedInternally(False) +prop_type_KIT_PREPARED.setInternalNamespace(False) + + +prop_type_LANECOUNT = tr.getOrCreateNewPropertyType('LANECOUNT', DataType.INTEGER) +prop_type_LANECOUNT.setLabel('Lane Count') +prop_type_LANECOUNT.setManagedInternally(False) +prop_type_LANECOUNT.setInternalNamespace(False) + + +prop_type_LIBRARY_PROCESSING_FAILED = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_FAILED', DataType.BOOLEAN) +prop_type_LIBRARY_PROCESSING_FAILED.setLabel('Library processing failed') +prop_type_LIBRARY_PROCESSING_FAILED.setManagedInternally(False) +prop_type_LIBRARY_PROCESSING_FAILED.setInternalNamespace(False) + + +prop_type_LIBRARY_PROCESSING_POSSIBLE = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_POSSIBLE', DataType.BOOLEAN) +prop_type_LIBRARY_PROCESSING_POSSIBLE.setLabel('Library Processing possible') +prop_type_LIBRARY_PROCESSING_POSSIBLE.setManagedInternally(False) +prop_type_LIBRARY_PROCESSING_POSSIBLE.setInternalNamespace(False) + + +prop_type_LIBRARY_PROCESSING_SUCCESSFUL = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_SUCCESSFUL', DataType.BOOLEAN) +prop_type_LIBRARY_PROCESSING_SUCCESSFUL.setLabel('Library processing successful') +prop_type_LIBRARY_PROCESSING_SUCCESSFUL.setManagedInternally(False) +prop_type_LIBRARY_PROCESSING_SUCCESSFUL.setInternalNamespace(False) + + +prop_type_LOT = tr.getOrCreateNewPropertyType('LOT', DataType.INTEGER) +prop_type_LOT.setLabel('Kit Lot #') +prop_type_LOT.setManagedInternally(False) +prop_type_LOT.setInternalNamespace(False) + + +prop_type_MACS_VERSION = tr.getOrCreateNewPropertyType('MACS_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_MACS_VERSION.setLabel('MACS VERSION') +prop_type_MACS_VERSION.setManagedInternally(False) +prop_type_MACS_VERSION.setInternalNamespace(False) + +prop_type_MACS_VERSION.setVocabulary(vocabulary_MACS_VERSION) + +prop_type_MAPPED_READS = tr.getOrCreateNewPropertyType('MAPPED_READS', DataType.INTEGER) +prop_type_MAPPED_READS.setLabel('Mapped reads') +prop_type_MAPPED_READS.setManagedInternally(False) +prop_type_MAPPED_READS.setInternalNamespace(False) + + +prop_type_MAX = tr.getOrCreateNewPropertyType('MAX', DataType.REAL) +prop_type_MAX.setLabel('Maximum') +prop_type_MAX.setManagedInternally(False) +prop_type_MAX.setInternalNamespace(False) + + +prop_type_MEAN = tr.getOrCreateNewPropertyType('MEAN', DataType.REAL) +prop_type_MEAN.setLabel('Mean') +prop_type_MEAN.setManagedInternally(False) +prop_type_MEAN.setInternalNamespace(False) + + +prop_type_MIN = tr.getOrCreateNewPropertyType('MIN', DataType.REAL) +prop_type_MIN.setLabel('Minimum') +prop_type_MIN.setManagedInternally(False) +prop_type_MIN.setInternalNamespace(False) + + +prop_type_MISMATCH_IN_INDEX = tr.getOrCreateNewPropertyType('MISMATCH_IN_INDEX', DataType.CONTROLLEDVOCABULARY) +prop_type_MISMATCH_IN_INDEX.setLabel('Mismatch in Index') +prop_type_MISMATCH_IN_INDEX.setManagedInternally(False) +prop_type_MISMATCH_IN_INDEX.setInternalNamespace(False) + +prop_type_MISMATCH_IN_INDEX.setVocabulary(vocabulary_MISMATCH_IN_INDEX) + +prop_type_NANO_DROP = tr.getOrCreateNewPropertyType('NANO_DROP', DataType.CONTROLLEDVOCABULARY) +prop_type_NANO_DROP.setLabel('Nano Drop') +prop_type_NANO_DROP.setManagedInternally(False) +prop_type_NANO_DROP.setInternalNamespace(False) + +prop_type_NANO_DROP.setVocabulary(vocabulary_NANO_DROP) + +prop_type_NCBI_ORGANISM_TAXONOMY = tr.getOrCreateNewPropertyType('NCBI_ORGANISM_TAXONOMY', DataType.CONTROLLEDVOCABULARY) +prop_type_NCBI_ORGANISM_TAXONOMY.setLabel('Organism (NCBI Taxonomy)') +prop_type_NCBI_ORGANISM_TAXONOMY.setManagedInternally(False) +prop_type_NCBI_ORGANISM_TAXONOMY.setInternalNamespace(False) + +prop_type_NCBI_ORGANISM_TAXONOMY.setVocabulary(vocabulary_NCBI_TAXONOMY) + +prop_type_NM_DNA = tr.getOrCreateNewPropertyType('NM_DNA', DataType.REAL) +prop_type_NM_DNA.setLabel('Calculated DNA concentration of library (nM)') +prop_type_NM_DNA.setManagedInternally(False) +prop_type_NM_DNA.setInternalNamespace(False) + + +prop_type_NOTES = tr.getOrCreateNewPropertyType('NOTES', DataType.MULTILINE_VARCHAR) +prop_type_NOTES.setLabel('Notes') +prop_type_NOTES.setManagedInternally(False) +prop_type_NOTES.setInternalNamespace(False) + + +prop_type_NOTES_CUSTOMER = tr.getOrCreateNewPropertyType('NOTES_CUSTOMER', DataType.MULTILINE_VARCHAR) +prop_type_NOTES_CUSTOMER.setLabel('Notes Customer') +prop_type_NOTES_CUSTOMER.setManagedInternally(False) +prop_type_NOTES_CUSTOMER.setInternalNamespace(False) + + +prop_type_NUMBER_OF_ATTACHMENTS = tr.getOrCreateNewPropertyType('NUMBER_OF_ATTACHMENTS', DataType.INTEGER) +prop_type_NUMBER_OF_ATTACHMENTS.setLabel('Number of Attachments') +prop_type_NUMBER_OF_ATTACHMENTS.setManagedInternally(False) +prop_type_NUMBER_OF_ATTACHMENTS.setInternalNamespace(False) + + +prop_type_ORGANISM_FREE = tr.getOrCreateNewPropertyType('ORGANISM_FREE', DataType.VARCHAR) +prop_type_ORGANISM_FREE.setLabel('Organism (if OTHER)') +prop_type_ORGANISM_FREE.setManagedInternally(False) +prop_type_ORGANISM_FREE.setInternalNamespace(False) + + +prop_type_OTRS = tr.getOrCreateNewPropertyType('OTRS', DataType.INTEGER) +prop_type_OTRS.setLabel('OTRS ID #') +prop_type_OTRS.setManagedInternally(False) +prop_type_OTRS.setInternalNamespace(False) + + +prop_type_PAIRED_END_KIT = tr.getOrCreateNewPropertyType('PAIRED_END_KIT', DataType.VARCHAR) +prop_type_PAIRED_END_KIT.setLabel('Paired End Kit') +prop_type_PAIRED_END_KIT.setManagedInternally(False) +prop_type_PAIRED_END_KIT.setInternalNamespace(False) + + +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX = tr.getOrCreateNewPropertyType('PERCENTAGE_ONE_MISMATCH_READS_INDEX', DataType.REAL) +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setLabel('% One Mismatch Reads (Index)') +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setManagedInternally(False) +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setInternalNamespace(False) + + +prop_type_PERCENTAGE_PASSED_FILTERING = tr.getOrCreateNewPropertyType('PERCENTAGE_PASSED_FILTERING', DataType.REAL) +prop_type_PERCENTAGE_PASSED_FILTERING.setLabel('% Passes Illumina Filtering (PF)') +prop_type_PERCENTAGE_PASSED_FILTERING.setManagedInternally(False) +prop_type_PERCENTAGE_PASSED_FILTERING.setInternalNamespace(False) + + +prop_type_PERCENTAGE_PERFECT_INDEX_READS = tr.getOrCreateNewPropertyType('PERCENTAGE_PERFECT_INDEX_READS', DataType.REAL) +prop_type_PERCENTAGE_PERFECT_INDEX_READS.setLabel('% Perfect Index Reads') +prop_type_PERCENTAGE_PERFECT_INDEX_READS.setManagedInternally(False) +prop_type_PERCENTAGE_PERFECT_INDEX_READS.setInternalNamespace(False) + + +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE = tr.getOrCreateNewPropertyType('PERCENTAGE_RAW_CLUSTERS_PER_LANE', DataType.REAL) +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setLabel('% of raw clusters per lane') +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setManagedInternally(False) +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setInternalNamespace(False) + + +prop_type_PREPARED_BY = tr.getOrCreateNewPropertyType('PREPARED_BY', DataType.VARCHAR) +prop_type_PREPARED_BY.setLabel('Prepared by') +prop_type_PREPARED_BY.setManagedInternally(False) +prop_type_PREPARED_BY.setInternalNamespace(False) + + +prop_type_PRIMARYDATASIZE = tr.getOrCreateNewPropertyType('PRIMARYDATASIZE', DataType.INTEGER) +prop_type_PRIMARYDATASIZE.setLabel('primary Data Size') +prop_type_PRIMARYDATASIZE.setManagedInternally(False) +prop_type_PRIMARYDATASIZE.setInternalNamespace(False) + + +prop_type_PRIMARYINDEXSIZE = tr.getOrCreateNewPropertyType('PRIMARYINDEXSIZE', DataType.INTEGER) +prop_type_PRIMARYINDEXSIZE.setLabel('primary Index Size') +prop_type_PRIMARYINDEXSIZE.setManagedInternally(False) +prop_type_PRIMARYINDEXSIZE.setInternalNamespace(False) + + +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL = tr.getOrCreateNewPropertyType('PRINCIPAL_INVESTIGATOR_EMAIL', DataType.VARCHAR) +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setLabel('Email of Principal Investigator') +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setManagedInternally(False) +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setInternalNamespace(False) + + +prop_type_PRINCIPAL_INVESTIGATOR_NAME = tr.getOrCreateNewPropertyType('PRINCIPAL_INVESTIGATOR_NAME', DataType.VARCHAR) +prop_type_PRINCIPAL_INVESTIGATOR_NAME.setLabel('Name of Principal Investigator') +prop_type_PRINCIPAL_INVESTIGATOR_NAME.setManagedInternally(False) +prop_type_PRINCIPAL_INVESTIGATOR_NAME.setInternalNamespace(False) + + +prop_type_REQUIRED_LANES = tr.getOrCreateNewPropertyType('REQUIRED_LANES', DataType.CONTROLLEDVOCABULARY) +prop_type_REQUIRED_LANES.setLabel('Number of Required Lanes') +prop_type_REQUIRED_LANES.setManagedInternally(False) +prop_type_REQUIRED_LANES.setInternalNamespace(False) + +prop_type_REQUIRED_LANES.setVocabulary(vocabulary_REQUIRED_LANES) + +prop_type_SAMPLE_CHARACTERISTICS = tr.getOrCreateNewPropertyType('SAMPLE_CHARACTERISTICS', DataType.MULTILINE_VARCHAR) +prop_type_SAMPLE_CHARACTERISTICS.setLabel('Sample characteristics') +prop_type_SAMPLE_CHARACTERISTICS.setManagedInternally(False) +prop_type_SAMPLE_CHARACTERISTICS.setInternalNamespace(False) + + +prop_type_SAMPLE_DATA_PROCESSING = tr.getOrCreateNewPropertyType('SAMPLE_DATA_PROCESSING', DataType.MULTILINE_VARCHAR) +prop_type_SAMPLE_DATA_PROCESSING.setLabel('Sample Data Processing') +prop_type_SAMPLE_DATA_PROCESSING.setManagedInternally(False) +prop_type_SAMPLE_DATA_PROCESSING.setInternalNamespace(False) + + +prop_type_SAMPLE_EXTRACT_PROTOCOL = tr.getOrCreateNewPropertyType('SAMPLE_EXTRACT_PROTOCOL', DataType.MULTILINE_VARCHAR) +prop_type_SAMPLE_EXTRACT_PROTOCOL.setLabel('Sample Extract Protocol') +prop_type_SAMPLE_EXTRACT_PROTOCOL.setManagedInternally(False) +prop_type_SAMPLE_EXTRACT_PROTOCOL.setInternalNamespace(False) + + +prop_type_SAMPLE_ID = tr.getOrCreateNewPropertyType('SAMPLE_ID', DataType.VARCHAR) +prop_type_SAMPLE_ID.setLabel('Sample ID') +prop_type_SAMPLE_ID.setManagedInternally(False) +prop_type_SAMPLE_ID.setInternalNamespace(False) + + +prop_type_SAMPLE_KIND = tr.getOrCreateNewPropertyType('SAMPLE_KIND', DataType.CONTROLLEDVOCABULARY) +prop_type_SAMPLE_KIND.setLabel('Sample Kind') +prop_type_SAMPLE_KIND.setManagedInternally(False) +prop_type_SAMPLE_KIND.setInternalNamespace(False) + +prop_type_SAMPLE_KIND.setVocabulary(vocabulary_SAMPLE_TYPE) + +prop_type_SAMPLE_LIBRARY_SELECTION = tr.getOrCreateNewPropertyType('SAMPLE_LIBRARY_SELECTION', DataType.CONTROLLEDVOCABULARY) +prop_type_SAMPLE_LIBRARY_SELECTION.setLabel('Sample Library Selection') +prop_type_SAMPLE_LIBRARY_SELECTION.setManagedInternally(False) +prop_type_SAMPLE_LIBRARY_SELECTION.setInternalNamespace(False) + +prop_type_SAMPLE_LIBRARY_SELECTION.setVocabulary(vocabulary_SAMPLE_LIBRARY_SELECTION) + +prop_type_SAMPLE_LIBRARY_SOURCE = tr.getOrCreateNewPropertyType('SAMPLE_LIBRARY_SOURCE', DataType.CONTROLLEDVOCABULARY) +prop_type_SAMPLE_LIBRARY_SOURCE.setLabel('Sample Library Source') +prop_type_SAMPLE_LIBRARY_SOURCE.setManagedInternally(False) +prop_type_SAMPLE_LIBRARY_SOURCE.setInternalNamespace(False) + +prop_type_SAMPLE_LIBRARY_SOURCE.setVocabulary(vocabulary_SAMPLE_LIBRARY_SOURCE_VOC) + +prop_type_SAMPLE_LIBRARY_STRATEGY = tr.getOrCreateNewPropertyType('SAMPLE_LIBRARY_STRATEGY', DataType.CONTROLLEDVOCABULARY) +prop_type_SAMPLE_LIBRARY_STRATEGY.setLabel('Sample Library Strategy') +prop_type_SAMPLE_LIBRARY_STRATEGY.setManagedInternally(False) +prop_type_SAMPLE_LIBRARY_STRATEGY.setInternalNamespace(False) + +prop_type_SAMPLE_LIBRARY_STRATEGY.setVocabulary(vocabulary_SAMPLE_LIBRARY_STRATEGY) + +prop_type_SAMPLE_MOLECULE = tr.getOrCreateNewPropertyType('SAMPLE_MOLECULE', DataType.CONTROLLEDVOCABULARY) +prop_type_SAMPLE_MOLECULE.setLabel('Sample molecule') +prop_type_SAMPLE_MOLECULE.setManagedInternally(False) +prop_type_SAMPLE_MOLECULE.setInternalNamespace(False) + +prop_type_SAMPLE_MOLECULE.setVocabulary(vocabulary_SAMPLE_MOLECULE) + +prop_type_SAMPLE_SOURCE_NAME = tr.getOrCreateNewPropertyType('SAMPLE_SOURCE_NAME', DataType.VARCHAR) +prop_type_SAMPLE_SOURCE_NAME.setLabel('Sample Source Name') +prop_type_SAMPLE_SOURCE_NAME.setManagedInternally(False) +prop_type_SAMPLE_SOURCE_NAME.setInternalNamespace(False) + + +prop_type_SAMTOOLS_FLAGSTAT = tr.getOrCreateNewPropertyType('SAMTOOLS_FLAGSTAT', DataType.MULTILINE_VARCHAR) +prop_type_SAMTOOLS_FLAGSTAT.setLabel('Samtools Flagstat Output') +prop_type_SAMTOOLS_FLAGSTAT.setManagedInternally(False) +prop_type_SAMTOOLS_FLAGSTAT.setInternalNamespace(False) + + +prop_type_SBS_KIT = tr.getOrCreateNewPropertyType('SBS_KIT', DataType.VARCHAR) +prop_type_SBS_KIT.setLabel('SBS Kit') +prop_type_SBS_KIT.setManagedInternally(False) +prop_type_SBS_KIT.setInternalNamespace(False) + + +prop_type_SBS_SEQUENCING_KIT_VERSION = tr.getOrCreateNewPropertyType('SBS_SEQUENCING_KIT_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_SBS_SEQUENCING_KIT_VERSION.setLabel('SBS Sequencing Kit Version') +prop_type_SBS_SEQUENCING_KIT_VERSION.setManagedInternally(False) +prop_type_SBS_SEQUENCING_KIT_VERSION.setInternalNamespace(False) + +prop_type_SBS_SEQUENCING_KIT_VERSION.setVocabulary(vocabulary_SBS_SEQUENCING_KIT_VERSION) + +prop_type_SCRIPT_TYPE = tr.getOrCreateNewPropertyType('SCRIPT_TYPE', DataType.REAL) +prop_type_SCRIPT_TYPE.setLabel('Script Type') +prop_type_SCRIPT_TYPE.setManagedInternally(False) +prop_type_SCRIPT_TYPE.setInternalNamespace(False) + + +prop_type_SCS_PROTOCOL_VERSION = tr.getOrCreateNewPropertyType('SCS_PROTOCOL_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_SCS_PROTOCOL_VERSION.setLabel('SCS Protocol Version') +prop_type_SCS_PROTOCOL_VERSION.setManagedInternally(False) +prop_type_SCS_PROTOCOL_VERSION.setInternalNamespace(False) + +prop_type_SCS_PROTOCOL_VERSION.setVocabulary(vocabulary_SCS_PROTOCOL_VERSION) + +prop_type_SCS_SOFTWARE_VERSION = tr.getOrCreateNewPropertyType('SCS_SOFTWARE_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_SCS_SOFTWARE_VERSION.setLabel('SCS Software Version') +prop_type_SCS_SOFTWARE_VERSION.setManagedInternally(False) +prop_type_SCS_SOFTWARE_VERSION.setInternalNamespace(False) + +prop_type_SCS_SOFTWARE_VERSION.setVocabulary(vocabulary_SCS_SOFTWARE_VERSION) + +prop_type_SEQUENCER = tr.getOrCreateNewPropertyType('SEQUENCER', DataType.CONTROLLEDVOCABULARY) +prop_type_SEQUENCER.setLabel('Sequencer') +prop_type_SEQUENCER.setManagedInternally(False) +prop_type_SEQUENCER.setInternalNamespace(False) + +prop_type_SEQUENCER.setVocabulary(vocabulary_SEQUENCER) + +prop_type_SEQUENCER_FINISHED = tr.getOrCreateNewPropertyType('SEQUENCER_FINISHED', DataType.TIMESTAMP) +prop_type_SEQUENCER_FINISHED.setLabel('Sequencer finished') +prop_type_SEQUENCER_FINISHED.setManagedInternally(False) +prop_type_SEQUENCER_FINISHED.setInternalNamespace(False) + + +prop_type_SEQUENCING_APPLICATION = tr.getOrCreateNewPropertyType('SEQUENCING_APPLICATION', DataType.CONTROLLEDVOCABULARY) +prop_type_SEQUENCING_APPLICATION.setLabel('Sequencing Application') +prop_type_SEQUENCING_APPLICATION.setManagedInternally(False) +prop_type_SEQUENCING_APPLICATION.setInternalNamespace(False) + +prop_type_SEQUENCING_APPLICATION.setVocabulary(vocabulary_SEQUENCING_APPLICATION) + +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG = tr.getOrCreateNewPropertyType('STARTING_AMOUNT_OF_SAMPLE_IN_NG', DataType.REAL) +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setLabel('Starting amount of sample (ng)') +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setManagedInternally(False) +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setInternalNamespace(False) + + +prop_type_STD = tr.getOrCreateNewPropertyType('STD', DataType.REAL) +prop_type_STD.setLabel('Standard deviation') +prop_type_STD.setManagedInternally(False) +prop_type_STD.setInternalNamespace(False) + + +prop_type_SURFACECOUNT = tr.getOrCreateNewPropertyType('SURFACECOUNT', DataType.INTEGER) +prop_type_SURFACECOUNT.setLabel('Surface Count') +prop_type_SURFACECOUNT.setManagedInternally(False) +prop_type_SURFACECOUNT.setInternalNamespace(False) + + +prop_type_SWATHCOUNT = tr.getOrCreateNewPropertyType('SWATHCOUNT', DataType.INTEGER) +prop_type_SWATHCOUNT.setLabel('Swath Count') +prop_type_SWATHCOUNT.setManagedInternally(False) +prop_type_SWATHCOUNT.setInternalNamespace(False) + + +prop_type_TILECOUNT = tr.getOrCreateNewPropertyType('TILECOUNT', DataType.INTEGER) +prop_type_TILECOUNT.setLabel('Tile Count') +prop_type_TILECOUNT.setManagedInternally(False) +prop_type_TILECOUNT.setInternalNamespace(False) + + +prop_type_TOTAL_READS = tr.getOrCreateNewPropertyType('TOTAL_READS', DataType.INTEGER) +prop_type_TOTAL_READS.setLabel('Total reads') +prop_type_TOTAL_READS.setManagedInternally(False) +prop_type_TOTAL_READS.setInternalNamespace(False) + + +prop_type_UL_DNA = tr.getOrCreateNewPropertyType('UL_DNA', DataType.REAL) +prop_type_UL_DNA.setLabel('Calculated ul DNA for 2nM stock') +prop_type_UL_DNA.setManagedInternally(False) +prop_type_UL_DNA.setInternalNamespace(False) + + +prop_type_UL_EB = tr.getOrCreateNewPropertyType('UL_EB', DataType.REAL) +prop_type_UL_EB.setLabel('Calculated ul EB for 2nM stock ') +prop_type_UL_EB.setManagedInternally(False) +prop_type_UL_EB.setInternalNamespace(False) + + +prop_type_UL_STOCK = tr.getOrCreateNewPropertyType('UL_STOCK', DataType.INTEGER) +prop_type_UL_STOCK.setLabel('ul of 2nM stock') +prop_type_UL_STOCK.setManagedInternally(False) +prop_type_UL_STOCK.setInternalNamespace(False) + + +prop_type_UNIQUE_BARCODES = tr.getOrCreateNewPropertyType('UNIQUE_BARCODES', DataType.VARCHAR) +prop_type_UNIQUE_BARCODES.setLabel('Unique Barcodes in Pool?') +prop_type_UNIQUE_BARCODES.setManagedInternally(False) +prop_type_UNIQUE_BARCODES.setInternalNamespace(False) + + +prop_type_VERSION = tr.getOrCreateNewPropertyType('VERSION', DataType.VARCHAR) +prop_type_VERSION.setLabel('Version') +prop_type_VERSION.setManagedInternally(False) +prop_type_VERSION.setInternalNamespace(False) + + +prop_type_YIELD_MBASES = tr.getOrCreateNewPropertyType('YIELD_MBASES', DataType.INTEGER) +prop_type_YIELD_MBASES.setLabel('Yield(Mbases)') +prop_type_YIELD_MBASES.setManagedInternally(False) +prop_type_YIELD_MBASES.setInternalNamespace(False) + + +prop_type_ZOOMLEVELS = tr.getOrCreateNewPropertyType('ZOOMLEVELS', DataType.INTEGER) +prop_type_ZOOMLEVELS.setLabel('zoom Levels') +prop_type_ZOOMLEVELS.setManagedInternally(False) +prop_type_ZOOMLEVELS.setInternalNamespace(False) + + +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_ALIGNMENT_SOFTWARE) +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setSection(None) +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setPositionInForms(3) + +assignment_DATA_SET_ALIGNMENT_VERSION = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_VERSION) +assignment_DATA_SET_ALIGNMENT_VERSION.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_VERSION.setSection(None) +assignment_DATA_SET_ALIGNMENT_VERSION.setPositionInForms(4) + +assignment_DATA_SET_ALIGNMENT_NOTES = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_NOTES) +assignment_DATA_SET_ALIGNMENT_NOTES.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_NOTES.setSection(None) +assignment_DATA_SET_ALIGNMENT_NOTES.setPositionInForms(5) + +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_SAMTOOLS_FLAGSTAT) +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setSection(None) +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setPositionInForms(6) + +assignment_DATA_SET_ALIGNMENT_MAPPED_READS = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_MAPPED_READS) +assignment_DATA_SET_ALIGNMENT_MAPPED_READS.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_MAPPED_READS.setSection(None) +assignment_DATA_SET_ALIGNMENT_MAPPED_READS.setPositionInForms(7) + +assignment_DATA_SET_ALIGNMENT_TOTAL_READS = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_TOTAL_READS) +assignment_DATA_SET_ALIGNMENT_TOTAL_READS.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_TOTAL_READS.setSection(None) +assignment_DATA_SET_ALIGNMENT_TOTAL_READS.setPositionInForms(8) + +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_ISSUED_COMMAND) +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setSection(None) +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setPositionInForms(9) + +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX = tr.assignPropertyType(data_set_type_BASECALL_STATS, prop_type_MISMATCH_IN_INDEX) +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setMandatory(False) +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setSection(None) +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setPositionInForms(3) + +assignment_DATA_SET_BIGWIGGLE_NOTES = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_NOTES) +assignment_DATA_SET_BIGWIGGLE_NOTES.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_NOTES.setSection(None) +assignment_DATA_SET_BIGWIGGLE_NOTES.setPositionInForms(3) + +assignment_DATA_SET_BIGWIGGLE_VERSION = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_VERSION) +assignment_DATA_SET_BIGWIGGLE_VERSION.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_VERSION.setSection(None) +assignment_DATA_SET_BIGWIGGLE_VERSION.setPositionInForms(4) + +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ISCOMPRESSED) +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setSection(None) +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setPositionInForms(5) + +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ISSWAPPED) +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setSection(None) +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setPositionInForms(6) + +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_PRIMARYDATASIZE) +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setSection(None) +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setPositionInForms(7) + +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_PRIMARYINDEXSIZE) +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setSection(None) +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setPositionInForms(8) + +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ZOOMLEVELS) +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setSection(None) +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setPositionInForms(9) + +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_CHROMCOUNT) +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setSection(None) +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setPositionInForms(10) + +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_BASESCOVERED) +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setSection(None) +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setPositionInForms(11) + +assignment_DATA_SET_BIGWIGGLE_MEAN = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MEAN) +assignment_DATA_SET_BIGWIGGLE_MEAN.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_MEAN.setSection(None) +assignment_DATA_SET_BIGWIGGLE_MEAN.setPositionInForms(12) + +assignment_DATA_SET_BIGWIGGLE_MIN = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MIN) +assignment_DATA_SET_BIGWIGGLE_MIN.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_MIN.setSection(None) +assignment_DATA_SET_BIGWIGGLE_MIN.setPositionInForms(13) + +assignment_DATA_SET_BIGWIGGLE_MAX = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MAX) +assignment_DATA_SET_BIGWIGGLE_MAX.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_MAX.setSection(None) +assignment_DATA_SET_BIGWIGGLE_MAX.setPositionInForms(14) + +assignment_DATA_SET_BIGWIGGLE_STD = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_STD) +assignment_DATA_SET_BIGWIGGLE_STD.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_STD.setSection(None) +assignment_DATA_SET_BIGWIGGLE_STD.setPositionInForms(15) + +assignment_DATA_SET_FASTQ_GZ_NOTES = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_NOTES) +assignment_DATA_SET_FASTQ_GZ_NOTES.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_NOTES.setSection(None) +assignment_DATA_SET_FASTQ_GZ_NOTES.setPositionInForms(3) + +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_YIELD_MBASES) +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setSection(None) +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setPositionInForms(4) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_PASSED_FILTERING) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setPositionInForms(5) + +assignment_DATA_SET_FASTQ_GZ_BARCODE = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_BARCODE) +assignment_DATA_SET_FASTQ_GZ_BARCODE.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_BARCODE.setSection(None) +assignment_DATA_SET_FASTQ_GZ_BARCODE.setPositionInForms(6) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setPositionInForms(7) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_PERFECT_INDEX_READS) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setPositionInForms(8) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setPositionInForms(9) + +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN = tr.assignPropertyType(exp_type_HT_SEQUENCING, prop_type_EXPERIMENT_DESIGN) +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setMandatory(False) +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setSection(None) +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setPositionInForms(3) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SEQUENCER) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setPositionInForms(4) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_END_TYPE) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setPositionInForms(6) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_FLOW_CELL_SEQUENCED_ON) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setPositionInForms(7) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SEQUENCER_FINISHED) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setPositionInForms(8) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_ILLUMINA_PIPELINE_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setPositionInForms(9) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES_REQUESTED_BY_CUSTOMER = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CYCLES_REQUESTED_BY_CUSTOMER) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES_REQUESTED_BY_CUSTOMER.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES_REQUESTED_BY_CUSTOMER.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES_REQUESTED_BY_CUSTOMER.setPositionInForms(10) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_INDEXREAD) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setPositionInForms(11) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2 = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_INDEXREAD2) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setPositionInForms(12) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CONTROL_LANE) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setPositionInForms(13) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_FLOWCELLTYPE) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setPositionInForms(14) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_LANECOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setPositionInForms(15) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SURFACECOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setPositionInForms(16) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SWATHCOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setPositionInForms(17) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_TILECOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setPositionInForms(18) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SBS_KIT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setPositionInForms(19) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_PAIRED_END_KIT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setPositionInForms(20) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_ANALYSIS_FINISHED) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setPositionInForms(22) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_NOTES) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setPositionInForms(23) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_DATA_TRANSFERRED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_DATA_TRANSFERRED) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_DATA_TRANSFERRED.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_DATA_TRANSFERRED.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_DATA_TRANSFERRED.setPositionInForms(3) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CLUSTER_STATION) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION.setPositionInForms(7) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CREATED_ON_CS = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CREATED_ON_CS) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CREATED_ON_CS.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CREATED_ON_CS.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CREATED_ON_CS.setPositionInForms(8) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CS_PROTOCOL_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CS_PROTOCOL_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CS_PROTOCOL_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CS_PROTOCOL_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CS_PROTOCOL_VERSION.setPositionInForms(9) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_GENERATION_KIT_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CLUSTER_GENERATION_KIT_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_GENERATION_KIT_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_GENERATION_KIT_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_GENERATION_KIT_VERSION.setPositionInForms(10) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION_SOFTWARE_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CLUSTER_STATION_SOFTWARE_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION_SOFTWARE_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION_SOFTWARE_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CLUSTER_STATION_SOFTWARE_VERSION.setPositionInForms(11) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CONCENTRATION_FLOWLANE) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setPositionInForms(12) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SCS_PROTOCOL_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_SCS_PROTOCOL_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SCS_PROTOCOL_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SCS_PROTOCOL_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SCS_PROTOCOL_VERSION.setPositionInForms(13) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SBS_SEQUENCING_KIT_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_SBS_SEQUENCING_KIT_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SBS_SEQUENCING_KIT_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SBS_SEQUENCING_KIT_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_SBS_SEQUENCING_KIT_VERSION.setPositionInForms(14) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_NOTES) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setPositionInForms(15) + +assignment_DATA_SET_ILLUMINA_GA_OUTPUT_SAMPLE_KIND = tr.assignPropertyType(data_set_type_ILLUMINA_GA_OUTPUT, prop_type_SAMPLE_KIND) +assignment_DATA_SET_ILLUMINA_GA_OUTPUT_SAMPLE_KIND.setMandatory(False) +assignment_DATA_SET_ILLUMINA_GA_OUTPUT_SAMPLE_KIND.setSection(None) +assignment_DATA_SET_ILLUMINA_GA_OUTPUT_SAMPLE_KIND.setPositionInForms(3) + +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION = tr.assignPropertyType(data_set_type_ILLUMINA_HISEQ_OUTPUT, prop_type_CASAVA_VERSION) +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setMandatory(False) +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setSection(None) +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setPositionInForms(3) + +assignment_SAMPLE_LIBRARY_BARCODE = tr.assignPropertyType(samp_type_LIBRARY, prop_type_BARCODE) +assignment_SAMPLE_LIBRARY_BARCODE.setMandatory(False) +assignment_SAMPLE_LIBRARY_BARCODE.setSection(None) +assignment_SAMPLE_LIBRARY_BARCODE.setPositionInForms(2) + +assignment_SAMPLE_LIBRARY_INDEX2 = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INDEX2) +assignment_SAMPLE_LIBRARY_INDEX2.setMandatory(False) +assignment_SAMPLE_LIBRARY_INDEX2.setSection(None) +assignment_SAMPLE_LIBRARY_INDEX2.setPositionInForms(3) + +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA = tr.assignPropertyType(samp_type_LIBRARY, prop_type_CONCENTRATION_PREPARED_ILLUMINA) +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setMandatory(False) +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setSection(None) +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setPositionInForms(4) + +assignment_SAMPLE_LIBRARY_PREPARED_BY = tr.assignPropertyType(samp_type_LIBRARY, prop_type_PREPARED_BY) +assignment_SAMPLE_LIBRARY_PREPARED_BY.setMandatory(False) +assignment_SAMPLE_LIBRARY_PREPARED_BY.setSection(None) +assignment_SAMPLE_LIBRARY_PREPARED_BY.setPositionInForms(5) + +assignment_SAMPLE_LIBRARY_KIT_PREPARED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_KIT_PREPARED) +assignment_SAMPLE_LIBRARY_KIT_PREPARED.setMandatory(False) +assignment_SAMPLE_LIBRARY_KIT_PREPARED.setSection(None) +assignment_SAMPLE_LIBRARY_KIT_PREPARED.setPositionInForms(6) + +assignment_SAMPLE_LIBRARY_KIT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_KIT) +assignment_SAMPLE_LIBRARY_KIT.setMandatory(False) +assignment_SAMPLE_LIBRARY_KIT.setSection(None) +assignment_SAMPLE_LIBRARY_KIT.setPositionInForms(7) + +assignment_SAMPLE_LIBRARY_LOT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LOT) +assignment_SAMPLE_LIBRARY_LOT.setMandatory(False) +assignment_SAMPLE_LIBRARY_LOT.setSection(None) +assignment_SAMPLE_LIBRARY_LOT.setPositionInForms(8) + +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG = tr.assignPropertyType(samp_type_LIBRARY, prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG) +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setMandatory(False) +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setSection(None) +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setPositionInForms(9) + +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY = tr.assignPropertyType(samp_type_LIBRARY, prop_type_DNA_CONCENTRATION_OF_LIBRARY) +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setMandatory(False) +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setSection(None) +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setPositionInForms(10) + +assignment_SAMPLE_LIBRARY_NANO_DROP = tr.assignPropertyType(samp_type_LIBRARY, prop_type_NANO_DROP) +assignment_SAMPLE_LIBRARY_NANO_DROP.setMandatory(False) +assignment_SAMPLE_LIBRARY_NANO_DROP.setSection(None) +assignment_SAMPLE_LIBRARY_NANO_DROP.setPositionInForms(11) + +assignment_SAMPLE_LIBRARY_AGILENT_KIT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_AGILENT_KIT) +assignment_SAMPLE_LIBRARY_AGILENT_KIT.setMandatory(False) +assignment_SAMPLE_LIBRARY_AGILENT_KIT.setSection(None) +assignment_SAMPLE_LIBRARY_AGILENT_KIT.setPositionInForms(12) + +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LIBRARY_PROCESSING_SUCCESSFUL) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setMandatory(False) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setSection(None) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setPositionInForms(13) + +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_DATA_TRANSFERRED) +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setMandatory(False) +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setSection(None) +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setPositionInForms(14) + +assignment_SAMPLE_LIBRARY_INVOICE = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INVOICE) +assignment_SAMPLE_LIBRARY_INVOICE.setMandatory(False) +assignment_SAMPLE_LIBRARY_INVOICE.setSection(None) +assignment_SAMPLE_LIBRARY_INVOICE.setPositionInForms(15) + +assignment_SAMPLE_LIBRARY_NOTES = tr.assignPropertyType(samp_type_LIBRARY, prop_type_NOTES) +assignment_SAMPLE_LIBRARY_NOTES.setMandatory(False) +assignment_SAMPLE_LIBRARY_NOTES.setSection(None) +assignment_SAMPLE_LIBRARY_NOTES.setPositionInForms(16) + +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION = tr.assignPropertyType(data_set_type_MACS_OUTPUT, prop_type_MACS_VERSION) +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setMandatory(False) +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setSection(None) +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setPositionInForms(3) + +assignment_DATA_SET_MACS_OUTPUT_NOTES = tr.assignPropertyType(data_set_type_MACS_OUTPUT, prop_type_NOTES) +assignment_DATA_SET_MACS_OUTPUT_NOTES.setMandatory(False) +assignment_DATA_SET_MACS_OUTPUT_NOTES.setSection(None) +assignment_DATA_SET_MACS_OUTPUT_NOTES.setPositionInForms(4) + +assignment_SAMPLE_MASTER_CONTACT_PERSON_NAME = tr.assignPropertyType(samp_type_MASTER, prop_type_CONTACT_PERSON_NAME) +assignment_SAMPLE_MASTER_CONTACT_PERSON_NAME.setMandatory(False) +assignment_SAMPLE_MASTER_CONTACT_PERSON_NAME.setSection(None) +assignment_SAMPLE_MASTER_CONTACT_PERSON_NAME.setPositionInForms(2) + +assignment_SAMPLE_MASTER_CONTACT_PERSON_EMAIL = tr.assignPropertyType(samp_type_MASTER, prop_type_CONTACT_PERSON_EMAIL) +assignment_SAMPLE_MASTER_CONTACT_PERSON_EMAIL.setMandatory(False) +assignment_SAMPLE_MASTER_CONTACT_PERSON_EMAIL.setSection(None) +assignment_SAMPLE_MASTER_CONTACT_PERSON_EMAIL.setPositionInForms(3) + +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_NAME = tr.assignPropertyType(samp_type_MASTER, prop_type_PRINCIPAL_INVESTIGATOR_NAME) +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_NAME.setMandatory(False) +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_NAME.setSection(None) +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_NAME.setPositionInForms(4) + +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_EMAIL = tr.assignPropertyType(samp_type_MASTER, prop_type_PRINCIPAL_INVESTIGATOR_EMAIL) +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_EMAIL.setMandatory(False) +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_EMAIL.setSection(None) +assignment_SAMPLE_MASTER_PRINCIPAL_INVESTIGATOR_EMAIL.setPositionInForms(5) + +assignment_SAMPLE_MASTER_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_MASTER, prop_type_EXTERNAL_SAMPLE_NAME) +assignment_SAMPLE_MASTER_EXTERNAL_SAMPLE_NAME.setMandatory(False) +assignment_SAMPLE_MASTER_EXTERNAL_SAMPLE_NAME.setSection(None) +assignment_SAMPLE_MASTER_EXTERNAL_SAMPLE_NAME.setPositionInForms(6) + +assignment_SAMPLE_MASTER_BIOLOGICAL_SAMPLE_ARRIVED = tr.assignPropertyType(samp_type_MASTER, prop_type_BIOLOGICAL_SAMPLE_ARRIVED) +assignment_SAMPLE_MASTER_BIOLOGICAL_SAMPLE_ARRIVED.setMandatory(False) +assignment_SAMPLE_MASTER_BIOLOGICAL_SAMPLE_ARRIVED.setSection(None) +assignment_SAMPLE_MASTER_BIOLOGICAL_SAMPLE_ARRIVED.setPositionInForms(7) + +assignment_SAMPLE_MASTER_SAMPLE_KIND = tr.assignPropertyType(samp_type_MASTER, prop_type_SAMPLE_KIND) +assignment_SAMPLE_MASTER_SAMPLE_KIND.setMandatory(False) +assignment_SAMPLE_MASTER_SAMPLE_KIND.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_KIND.setPositionInForms(8) + +assignment_SAMPLE_MASTER_SEQUENCING_APPLICATION = tr.assignPropertyType(samp_type_MASTER, prop_type_SEQUENCING_APPLICATION) +assignment_SAMPLE_MASTER_SEQUENCING_APPLICATION.setMandatory(False) +assignment_SAMPLE_MASTER_SEQUENCING_APPLICATION.setSection(None) +assignment_SAMPLE_MASTER_SEQUENCING_APPLICATION.setPositionInForms(9) + +assignment_SAMPLE_MASTER_NCBI_ORGANISM_TAXONOMY = tr.assignPropertyType(samp_type_MASTER, prop_type_NCBI_ORGANISM_TAXONOMY) +assignment_SAMPLE_MASTER_NCBI_ORGANISM_TAXONOMY.setMandatory(False) +assignment_SAMPLE_MASTER_NCBI_ORGANISM_TAXONOMY.setSection(None) +assignment_SAMPLE_MASTER_NCBI_ORGANISM_TAXONOMY.setPositionInForms(10) + +assignment_SAMPLE_RAW_CONCENTRATION_ORIGINAL_ILLUMINA = tr.assignPropertyType(samp_type_RAW, prop_type_CONCENTRATION_ORIGINAL_ILLUMINA) +assignment_SAMPLE_RAW_CONCENTRATION_ORIGINAL_ILLUMINA.setMandatory(False) +assignment_SAMPLE_RAW_CONCENTRATION_ORIGINAL_ILLUMINA.setSection(None) +assignment_SAMPLE_RAW_CONCENTRATION_ORIGINAL_ILLUMINA.setPositionInForms(2) + +assignment_SAMPLE_RAW_CYCLES_REQUESTED_BY_CUSTOMER = tr.assignPropertyType(samp_type_RAW, prop_type_CYCLES_REQUESTED_BY_CUSTOMER) +assignment_SAMPLE_RAW_CYCLES_REQUESTED_BY_CUSTOMER.setMandatory(False) +assignment_SAMPLE_RAW_CYCLES_REQUESTED_BY_CUSTOMER.setSection(None) +assignment_SAMPLE_RAW_CYCLES_REQUESTED_BY_CUSTOMER.setPositionInForms(3) + +assignment_SAMPLE_RAW_LIBRARY_PROCESSING_POSSIBLE = tr.assignPropertyType(samp_type_RAW, prop_type_LIBRARY_PROCESSING_POSSIBLE) +assignment_SAMPLE_RAW_LIBRARY_PROCESSING_POSSIBLE.setMandatory(False) +assignment_SAMPLE_RAW_LIBRARY_PROCESSING_POSSIBLE.setSection(None) +assignment_SAMPLE_RAW_LIBRARY_PROCESSING_POSSIBLE.setPositionInForms(4) + +assignment_SAMPLE_RAW_PREPARED_BY = tr.assignPropertyType(samp_type_RAW, prop_type_PREPARED_BY) +assignment_SAMPLE_RAW_PREPARED_BY.setMandatory(False) +assignment_SAMPLE_RAW_PREPARED_BY.setSection(None) +assignment_SAMPLE_RAW_PREPARED_BY.setPositionInForms(5) + +assignment_SAMPLE_RAW_KIT_PREPARED = tr.assignPropertyType(samp_type_RAW, prop_type_KIT_PREPARED) +assignment_SAMPLE_RAW_KIT_PREPARED.setMandatory(False) +assignment_SAMPLE_RAW_KIT_PREPARED.setSection(None) +assignment_SAMPLE_RAW_KIT_PREPARED.setPositionInForms(6) + +assignment_SAMPLE_RAW_INVOICE = tr.assignPropertyType(samp_type_RAW, prop_type_INVOICE) +assignment_SAMPLE_RAW_INVOICE.setMandatory(False) +assignment_SAMPLE_RAW_INVOICE.setSection(None) +assignment_SAMPLE_RAW_INVOICE.setPositionInForms(7) + +assignment_SAMPLE_RAW_NOTES = tr.assignPropertyType(samp_type_RAW, prop_type_NOTES) +assignment_SAMPLE_RAW_NOTES.setMandatory(False) +assignment_SAMPLE_RAW_NOTES.setSection(None) +assignment_SAMPLE_RAW_NOTES.setPositionInForms(8) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/data-sources/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/data-sources/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-dropbox/create-flowcell-dropbox.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-dropbox/create-flowcell-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..9b7f600f561382c7cae1cb15e101a614c23086c7 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-dropbox/create-flowcell-dropbox.py @@ -0,0 +1,195 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Parses the two Illumina provided files 'runParameters.xml' and 'RunInfo.xml' +and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties +from those two XML files. Additionally the number of lanes are read out and +are created as contained samples of type 'ILLUMINA_FLOW_LANE'. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import os +import shutil +from time import * +from datetime import * +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +IS_HISEQ_RUN=False +RUNPARAMETERS = 'runParameters.xml' +RUNINFO = 'RunInfo.xml' +FLOWCELL_SPACE='TEST' +FLOWCELL_PROJECT='TEST-PROJECT' +EXPERIMENT_TYPE_CODE='HT_SEQUENCING' + +FLOWCELL_PROJECT_ID = "/%(FLOWCELL_SPACE)s/%(FLOWCELL_PROJECT)s" % vars() + +# Mapping between XML file naming and used in here +RUNPARAMETERS_XML = {'FLOWCELL':'Flowcell', 'RTAVERSION':'RTAVersion', + 'CONTROLLANE':'ControlLane', 'SBS':'Sbs', 'INDEX':'Index', + 'CYCLES_REQUESTED_BY_CUSTOMER':'Read1', 'PE':'Pe'} +RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount', + 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'} +INSTRUMENT = {'SN792':'HISEQ2500'} + +class parseXmlFile: + + def __init__(self, xmlFile): + self.xmlFile = xmlFile + self.tree = etree.parse(self.xmlFile) + self.root = self.tree.getroot() + + def getXmlElement (self, elementName): + ''' + Returns the text value of a given XML element + ''' + for e in self.root.getchildren(): + element = e.find(elementName) + if element is None: + return 'None' + else: + return element.text + + def getAllchildren (self, elementName): + ''' + finds all children of a given XML Element and returns them as list + ''' + for e in self.root.getchildren(): + # the '//' means look recursively for all children not only direct ones + childList = self.tree.findall('//' + elementName) + return childList + +# ----------------------------------------------------------------------------- + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +# ----------------------------------------------------------------------------- + +def registerFlowLane(transaction, a_lane, name, newFlowCell): + ''' + Registers a new Flow lane + ''' + newFlowLane = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + name + ':' + str(a_lane), "ILLUMINA_FLOW_LANE") + newFlowLane.setContainer(newFlowCell) + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incoming = transaction.getIncoming() + incomingPath = incoming.getAbsolutePath() + + # Get the incoming name + name = incoming.getName() + + split=name.split("_") + if (len(split) == 4): + IS_HISEQ_RUN=True + if (len(split) == 2): + pass + + # Search for the sample and check if there is already sample with this name + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + if foundSamples.size() > 0: + raise NameError('Already found a Flow Cell with the following name: '+ name) + + # Parse the RunInfo.xml file + runInfo = parseXmlFile(incomingPath + '/' + RUNINFO) + + # Create a new Flow Cell and set the experiment + project = transaction.getProject(FLOWCELL_PROJECT_ID) + if project == None: + space = transaction.getSpace(FLOWCELL_SPACE) + if space == None: + space = transaction.createNewSpace(FLOWCELL_SPACE, None) + space.setDescription("A test space") + project = transaction.createNewProject(FLOWCELL_PROJECT_ID) + project.setDescription("A demo project") + expID = FLOWCELL_PROJECT_ID + '/' + datetime.now().strftime("%Y.%m") + exp = transaction.getExperiment(expID) + if exp == None: + exp = transaction.createNewExperiment(expID, EXPERIMENT_TYPE_CODE) + newFlowCell = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + name, "ILLUMINA_FLOW_CELL") + newFlowCell.setExperiment(exp) + + if IS_HISEQ_RUN: + run = runInfo.getAllchildren('Run')[0].attrib + if (run['Id'] != name): + raise NameError('Flowcell names do not match between directory name '+ name + + ' and ' + RUNINFO + 'property file: ' + run['Id']) + + # The HiSeq is providing more infos, which we will parse here: + runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS) + + newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", runParameters.getXmlElement(RUNPARAMETERS_XML['RTAVERSION'])) + newFlowCell.setPropertyValue("FLOWCELLTYPE", runParameters.getXmlElement(RUNPARAMETERS_XML['FLOWCELL'])) + newFlowCell.setPropertyValue("CONTROL_LANE", runParameters.getXmlElement(RUNPARAMETERS_XML['CONTROLLANE'])) + newFlowCell.setPropertyValue("SBS_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['SBS'])) + + read1 = runParameters.getAllchildren('Read1') + newFlowCell.setPropertyValue("CYCLES_REQUESTED_BY_CUSTOMER", read1[0].text) + + read2 = runParameters.getAllchildren('Read2') + if (str(read2[0].text) == '0'): + newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ") + else: + newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END") + newFlowCell.setPropertyValue("PAIRED_END_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['PE'])) + + indexRead1 = runParameters.getAllchildren('IndexRead1') + newFlowCell.setPropertyValue("INDEXREAD", indexRead1[0].text) + + indexRead2 = runParameters.getAllchildren('IndexRead2') + newFlowCell.setPropertyValue("INDEXREAD2", indexRead2[0].text) + + def setFcProperty(searchId, dict): + children = runInfo.getAllchildren(searchId) + for element in (dict): + if (element <> '') and (dict[element] <> ''): + newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]]) + + setFcProperty('FlowcellLayout', RUNINFO_XML) + + sequencer = runInfo.getAllchildren('Instrument') + newFlowCell.setPropertyValue("SEQUENCER", INSTRUMENT[sequencer[0].text]) + + newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", create_openbis_timestamp()) + if IS_HISEQ_RUN: + maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']] + else: + maxLanes = len(runInfo.getAllchildren('Tiles')[0]) + + [registerFlowLane(transaction, lane, name, newFlowCell) for lane in range(1,int(maxLanes)+1)] + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-dropbox/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9480a66c84c38984df15ad5e4db32cb15c5a88c0 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-dropbox/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for creating a flow cell based on runParameters.xml and RunInfo.xml created by an +# Illumina HiSeq +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-create-flowcell +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = create-flowcell-dropbox.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py new file mode 100644 index 0000000000000000000000000000000000000000..a63f60f88c06e93d7f9acaea991ec988d2940467 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py @@ -0,0 +1,194 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Parses the two Illumina provided files 'runParameters.xml' and 'RunInfo.xml' +and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties +from those two XML files. Additionally the number of lanes are read out and +are created as contained samples of type 'ILLUMINA_FLOW_LANE'. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import os +import shutil +from time import * +from datetime import * +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +IS_HISEQ_RUN=False +RUNPARAMETERS = 'runParameters.xml' +RUNINFO = 'RunInfo.xml' +FLOWCELL_SPACE='BSSE_FLOWCELLS' +FLOWCELL_PROJECT='FLOWCELLS' +EXPERIMENT_TYPE_CODE='HT_SEQUENCING' + +FLOWCELL_PROJECT_ID = "/%(FLOWCELL_SPACE)s/%(FLOWCELL_PROJECT)s" % vars() + +# Mapping between XML file naming and used in here +RUNPARAMETERS_XML = {'FLOWCELL':'Flowcell', 'RTAVERSION':'RTAVersion', + 'CONTROLLANE':'ControlLane', 'SBS':'Sbs', 'INDEX':'Index', + 'CYCLES_REQUESTED_BY_CUSTOMER':'Read1', 'PE':'Pe'} +RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount', + 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'} + +class parseXmlFile: + + def __init__(self, xmlFile): + self.xmlFile = xmlFile + self.tree = etree.parse(self.xmlFile) + self.root = self.tree.getroot() + + def getXmlElement (self, elementName): + ''' + Returns the text value of a given XML element + ''' + for e in self.root.getchildren(): + element = e.find(elementName) + if element is None: + return 'None' + else: + return element.text + + def getAllchildren (self, elementName): + ''' + finds all children of a given XML Element and returns them as list + ''' + for e in self.root.getchildren(): + # the '//' means look recursively for all children not only direct ones + childList = self.tree.findall('//' + elementName) + return childList + +# ----------------------------------------------------------------------------- + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +# ----------------------------------------------------------------------------- + +def registerFlowLane(transaction, a_lane, name, newFlowCell): + ''' + Registers a new Flow lane + ''' + newFlowLane = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + name + ':' + str(a_lane), "ILLUMINA_FLOW_LANE") + newFlowLane.setContainer(newFlowCell) + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incoming = transaction.getIncoming() + incomingPath = incoming.getAbsolutePath() + + # Get the incoming name + name = incoming.getName() + + split=name.split("_") + if (len(split) == 4): + IS_HISEQ_RUN=True + if (len(split) == 2): + pass + + # Search for the sample and check if there is already sample with this name + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + if foundSamples.size() > 0: + raise NameError('Already found a Flow Cell with the following name: '+ name) + + # Parse the RunInfo.xml file + runInfo = parseXmlFile(incomingPath + '/' + RUNINFO) + + # Create a new Flow Cell and set the experiment + project = transaction.getProject(FLOWCELL_PROJECT_ID) + if project == None: + space = transaction.getSpace(FLOWCELL_SPACE) + if space == None: + space = transaction.createNewSpace(FLOWCELL_SPACE, None) + space.setDescription("A test space") + project = transaction.createNewProject(FLOWCELL_PROJECT_ID) + project.setDescription("A demo project") + expID = FLOWCELL_PROJECT_ID + '/' + datetime.now().strftime("%Y.%m") + exp = transaction.getExperiment(expID) + if exp == None: + exp = transaction.createNewExperiment(expID, EXPERIMENT_TYPE_CODE) + newFlowCell = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + name, "ILLUMINA_FLOW_CELL") + newFlowCell.setExperiment(exp) + + if IS_HISEQ_RUN: + run = runInfo.getAllchildren('Run')[0].attrib + if (run['Id'] != name): + raise NameError('Flowcell names do not match between directory name '+ name + + ' and ' + RUNINFO + 'property file: ' + run['Id']) + + # The HiSeq is providing more infos, which we will parse here: + runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS) + + newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", runParameters.getXmlElement(RUNPARAMETERS_XML['RTAVERSION'])) + newFlowCell.setPropertyValue("FLOWCELLTYPE", runParameters.getXmlElement(RUNPARAMETERS_XML['FLOWCELL'])) + newFlowCell.setPropertyValue("CONTROL_LANE", runParameters.getXmlElement(RUNPARAMETERS_XML['CONTROLLANE'])) + newFlowCell.setPropertyValue("SBS_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['SBS'])) + + read1 = runParameters.getAllchildren('Read1') + newFlowCell.setPropertyValue("CYCLES_REQUESTED_BY_CUSTOMER", read1[0].text) + + read2 = runParameters.getAllchildren('Read2') + if (str(read2[0].text) == '0'): + newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ") + else: + newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END") + newFlowCell.setPropertyValue("PAIRED_END_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['PE'])) + + indexRead1 = runParameters.getAllchildren('IndexRead1') + newFlowCell.setPropertyValue("INDEXREAD", indexRead1[0].text) + + indexRead2 = runParameters.getAllchildren('IndexRead2') + newFlowCell.setPropertyValue("INDEXREAD2", indexRead2[0].text) + + def setFcProperty(searchId, dict): + children = runInfo.getAllchildren(searchId) + for element in (dict): + if (element <> '') and (dict[element] <> ''): + newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]]) + + setFcProperty('FlowcellLayout', RUNINFO_XML) + + sequencer = runInfo.getAllchildren('Instrument') + newFlowCell.setPropertyValue("SEQUENCER", sequencer[0].text) + + newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", create_openbis_timestamp()) + if IS_HISEQ_RUN: + maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']] + else: + maxLanes = len(runInfo.getAllchildren('Tiles')[0]) + + [registerFlowLane(transaction, lane, name, newFlowCell) for lane in range(1,int(maxLanes)+1)] + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..5c56666b206b67339b5155b80f2d5812c1ac34b0 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for creating a flow cell based on runParameters.xml and RunInfo.xml created by an +# Illumina HiSeq +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/create-flowcell-hiseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = create-flowcell-hiseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py new file mode 100644 index 0000000000000000000000000000000000000000..6188431519df407b9b7749b2a0a4c8d4f58a26ed --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py @@ -0,0 +1,199 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Parses the two Illumina provided files 'RunParameters.xml' and 'RunInfo.xml' +and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties +from those two XML files. Additionally the number of lanes are read out and +are created as contained samples of type 'ILLUMINA_FLOW_LANE'. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for MiSeq runs: 120726_M00721_0011_A000000000-A1FVF + +@author: +Manuel Kohler +''' + +import os +import shutil +from time import * +from datetime import * +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +RUNPARAMETERS = 'RunParameters.xml' +#RUNPARAMETERS = 'runParameters.xml' +RUNINFO = 'RunInfo.xml' +FLOWCELL_SPACE='/BSSE_FLOWCELLS/' +FLOWCELL_PROJECT='FLOWCELLS/' +EXPERIMENT_TYPE_CODE='HT_SEQUENCING' + +# Mapping between XML file naming and openBIS properties + +RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount', + 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'} + +#------------------------------------------------------------------------------ + +class parseXmlFile: + + def __init__(self, xmlFile): + self.xmlFile = xmlFile + self.tree = etree.parse(self.xmlFile) + self.root = self.tree.getroot() + + def getXmlElement (self, elementName): + ''' + Returns the text value of a given XML element + ''' + for e in self.root.getchildren(): + element = e.find(elementName) + if element is None: + return 'None' + else: + return element.text + + def getAllchildren (self, elementName): + ''' + finds all children of a given XML Element and returns them as list + ''' + for e in self.root.getchildren(): + # the '//' means look recursively for all children not only direct ones + childList = self.tree.findall('//' + elementName) + return childList + +# ----------------------------------------------------------------------------- + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +# ----------------------------------------------------------------------------- + +def registerFlowLane(a_lane, transaction, name, newFlowCell): + ''' + Registers a new Flow lane + ''' + newFlowLane = transaction.createNewSample(FLOWCELL_SPACE + name + ':' + str(a_lane), "ILLUMINA_FLOW_LANE") + newFlowLane.setContainer(newFlowCell) + +# ----------------------------------------------------------------------------- +def process(transaction): + + incoming = transaction.getIncoming() + incomingPath = incoming.getAbsolutePath() + + name = incoming.getName() + # ['120726', 'M00721', '0011', 'A000000000-A1FVF'] + runDate, MiseqID, runningNumber, trayAndFcId = name.split("_") + tray = trayAndFcId[0] + fcId = trayAndFcId[1:] + + # ----------------------------------------------------------------------------- + + # Search for the sample and check if there is already sample with this name + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + if foundSamples.size() > 0: + raise NameError('Already found a Flow Cell with the following name: '+ name) + + # Parse the RunInfo.xml file + runInfo = parseXmlFile(incomingPath + '/' + RUNINFO) + + # Create a new Flow Cell and set the experiment + newFlowCell = transaction.createNewSample(FLOWCELL_SPACE + name, "ILLUMINA_FLOW_CELL") + exp = transaction.getExperiment(FLOWCELL_SPACE + FLOWCELL_PROJECT + datetime.now().strftime("%Y.%m")) + if exp == None: + exp = transaction.createNewExperiment(FLOWCELL_SPACE + FLOWCELL_PROJECT + datetime.now().strftime("%Y.%m"), + EXPERIMENT_TYPE_CODE) + newFlowCell.setExperiment(exp) + + run = runInfo.getAllchildren('Run')[0].attrib + if (run['Id'] != name): + raise NameError('Flowcell names do not match between directory name '+ name + + ' and ' + RUNINFO + 'property file: ' + run['Id']) + + runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS) + RTAversion = (runParameters.getAllchildren('RTAVersion'))[0].text + print RTAversion + newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", RTAversion) + + def setFcProperty(searchId, dict): + children = runInfo.getAllchildren(searchId) + for element in (dict): + if (element <> '') and (dict[element] <> ''): + newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]]) + + # Reading out <FlowcellLayout LaneCount="1" SurfaceCount="1" SwathCount="1" TileCount="12" /> + setFcProperty('FlowcellLayout', RUNINFO_XML) + + sequencer = runInfo.getAllchildren('Instrument') + newFlowCell.setPropertyValue("SEQUENCER", sequencer[0].text) + + readMap = {} + reads = runInfo.getAllchildren('Reads') + read = reads[0].findall('Read') + + for r in read: + cycles = r.get('NumCycles', 'str') + number = r.get('Number', 'str') + isIndexed = r.get('IsIndexedRead', 'str') + readMap[number] = [cycles, isIndexed] + + # example of readMap: {'1': ['151', 'N'], '2': ['8', 'Y'], '3': ['8', 'Y'], '4': ['151', 'N']} + + newFlowCell.setPropertyValue("CYCLES_REQUESTED_BY_CUSTOMER", readMap['1'][0]) + + indexCount = 0 + readCount = 0 + + for e in readMap: + if readMap[e][1] == 'Y': + indexCount += 1 + else: + readCount += 1 + + if indexCount == 2: + newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END") + else: + newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ") + + try: + newFlowCell.setPropertyValue("INDEXREAD", readMap['2'][0]) + except: + newFlowCell.setPropertyValue("INDEXREAD", '0') + + try: + newFlowCell.setPropertyValue("INDEXREAD2", readMap['3'][0]) + except: + newFlowCell.setPropertyValue("INDEXREAD2", '0') + + newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", create_openbis_timestamp()) + + # get the number of lanes + maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']] + + [registerFlowLane(lane, transaction, name, newFlowCell) for lane in range(1,int(maxLanes)+1)] + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..1c15a550f60a5266f40912eb11e6d005eee4ab2f --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for creating a flow cell +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/dss/create-flowcell-miseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = create-flow-cell-miseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..1337bde948b0645c9713e3268dabd486e21275d3 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties @@ -0,0 +1,10 @@ +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/read-demultiplex-stats +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = read-demultiplex-stats.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py new file mode 100644 index 0000000000000000000000000000000000000000..df7c525e37c4de61929203b8c7b7cea8d7649f77 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py @@ -0,0 +1,538 @@ +''' + @copyright: 2012 ETH Zuerich, CISD + + @license: + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + + +@author: Manuel Kohler + +XML Structur which is processed: + +<?xml version="1.0"?> +<Summary> + <Lane index="8"> + <Sample index="lane8"> + <Barcode index="Undetermined"> + <Tile index="1101"> + <Read index="1"> + <Raw> + <Yield>1921250</Yield> + <YieldQ30>949680</YieldQ30> + <ClusterCount>38425</ClusterCount> + <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode> + <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode> + <QualityScoreSum>40995660</QualityScoreSum> + </Raw> + <Pf> + <Yield>945450</Yield> + <YieldQ30>854815</YieldQ30> + <ClusterCount>18909</ClusterCount> + <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode> + <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode> + <QualityScoreSum>33815505</QualityScoreSum> + </Pf> + </Read> + </Tile> + [...] + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +''' + +import time +import os +import fnmatch +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + + +class parseXmlFile: + + def __init__(self, xmlFile): + self.xmlFile = xmlFile + self.tree = etree.parse(self.xmlFile) + self.root = self.tree.getroot() + +# ----------------------------------------------------------------------------- + +class qcValues(object): + def __init__(self, Yield = 0, YieldQ30 = 0, ClusterCount = 0, + ClusterCount0MismatchBarcode = 0, ClusterCount1MismatchBarcode = 0, + QualityScoreSum = 0, *args, **kwargs): + self.Yield = Yield + self.YieldQ30 = YieldQ30 + self.ClusterCount = ClusterCount + self.ClusterCount0MismatchBarcode = ClusterCount0MismatchBarcode + self.ClusterCount1MismatchBarcode = ClusterCount1MismatchBarcode + self.QualityScoreSum = QualityScoreSum + + def __str__(self): + return "Yield: %s, YieldQ30: %s, ClusterCount: %s, ClusterCount0MismatchBarcode: %s," \ + " CusterCount1MismatchBarcode: %s, QualityScoreSum: %s" \ + % (self.Yield, self.YieldQ30, self.ClusterCount, self.ClusterCount0MismatchBarcode, + self.ClusterCount1MismatchBarcode, self.QualityScoreSum) + +class sample: + def __init__(self, Lane = 0, Sample = '', Barcode = '', Tile = '', Read = '', rawqc = qcValues([]), + pfqc = qcValues([]), *args, **kwargs): + self.Lane = Lane + self.Sample = Sample + self.Barcode = Barcode + self.Tile = Tile + self.Read = Read + self.rawqc = rawqc + self.pfqc = pfqc + + def __str__(self): + return "Lane: %s, Sample: %s, Barcode: %s, Tile: %s, Read: %s, rawqc: %s, pfqc: %s" \ + % (self.Lane, self.Sample, self.Barcode, self.Tile, self.Read, self.rawqc, self.pfqc) + +# ----------------------------------------------------------------------------- + +class Statistics: + def __init__(self, lane = 0, sampleName = "", index1 = "NoIndex", index2 = "NoIndex", pfYieldSum = 0, + rawYieldSum = 0, pfPercentage = 0.0, rawReadsSum = 0, pfReadsSum = 0, + pfYieldQ30Sum = 0, qualityScoreSum = 0, rawPercentageReadsPerLane = 0.0, + pfYieldQ30Percentage = 0.0, pfsumQualityScore = 0, pfmeanQualityScore = 0.0): + self.lane = lane + self.sampleName = sampleName + self.index1 = index1 + self.index2 = index2 + self.pfYieldSum = pfYieldSum + self.rawYieldSum = rawYieldSum + self.pfPercentage = pfPercentage + self.rawReadsSum = rawReadsSum + self.pfReadsSum = pfReadsSum + self.pfYieldQ30Sum = pfYieldQ30Sum + self.qualityScoreSum = qualityScoreSum + self.rawPercentageReadsPerLane = rawPercentageReadsPerLane + self.pfYieldQ30Percentage = pfYieldQ30Percentage + self.pfsumQualityScore = pfsumQualityScore + self.pfmeanQualityScore = pfmeanQualityScore + + def __str__(self): + return "lane: %s, sampleName: %s, index1: %s, index2: %s, pfYieldSum: %s, pfPercentage: %s," \ + " rawReadsSum: %s, pfReadsSum: %s," \ + " rawPercentageReadsPerLane: %s, pfYieldQ30Percentage: %s," \ + " pfmeanQualityScore: %s" \ + % (self.lane, self.sampleName, self.index1, self.index2, self.pfYieldSum, self.pfPercentage, + self.rawReadsSum, self.pfReadsSum, + self.rawPercentageReadsPerLane, self.pfYieldQ30Percentage, self.pfmeanQualityScore) + + def calculatePercentagePF (self, rawYield = 0, pfYield = 1): + try: + return round(float(pfYield) / float(rawYield) * 100, 2) + except: + return 0.0 + + def calulateMeanQualityScore (self, pfqualityScoreSum = 0, pfYield = 1): + try: + return round (float(pfqualityScoreSum) / float(pfYield), 2) + except: + return 0.0 + + def calculateYieldQ30Percentage (self, pfYieldQ30 = 0, pfYield = 1): + try: + return round (float(pfYieldQ30) / float(pfYield) * 100, 2) + except: + return 0.0 + +# ----------------------------------------------------------------------------- + +def xml2Memory(DEMULTIPLEX_XML): + ''' + Parse the XML file and put all values in a memory structure: + List of: + lane, sample, barcode, tile, read, qcRawList, qcPfList + ''' + + RAW_TAG = "Raw" + PF_TAG = "Pf" + + sampleList = [] + + xml = parseXmlFile(DEMULTIPLEX_XML) + r = xml.tree.getroot() + + for lane in r.getchildren(): + for mysample in lane: + for barcode in mysample: + for tile in barcode: + for read in tile: + + qcRaw = qcValues() + qcPf = qcValues() + qcRawList = [] + qcPfList = [] + + # Read out the Raw fields + raw = read.find(RAW_TAG) + for child in raw.getchildren(): + # equivalent to a Java reflection + setattr(qcRaw, child.tag, int(child.text)) + + # Read out the Pf fields + pf = read.find(PF_TAG) + for child in pf.getchildren(): + # equivalent to a Java reflection + setattr(qcPf, child.tag, int(child.text)) + + qcRawList.append(qcRaw) + qcPfList.append(qcPf) + + singleElement = sample () + + setattr(singleElement, lane.tag, lane.attrib) + setattr(singleElement, mysample.tag, mysample.attrib) + setattr(singleElement, barcode.tag, barcode.attrib) + setattr(singleElement, tile.tag, tile.attrib) + setattr(singleElement, read.tag, read.attrib) + singleElement.rawqc = qcRawList + singleElement.pfqc = qcPfList + + sampleList.append(singleElement) + return sampleList + +# ----------------------------------------------------------------------------- + +def calculateStatistics(listofSamples): + ''' + Structure of 'listofSamples' + Lane: {'index': '6'}, Sample: {'index': 'BSSE-QGF-3524_C0NKPACXX'}, Barcode: {'index': 'TGACCA'}, + Tile: {'index': '2307'}, Read: {'index': '1'}, rawqc:<mem>, pfqc:<mem> + ''' + + numberOfTiles = len(listofSamples) + + tile = sample() + raw = qcValues () + pf = qcValues () + stats = Statistics() + + for tile in listofSamples: + raw = tile.rawqc[0] + pf = tile.pfqc[0] + + stats.pfYieldSum += pf.Yield + stats.rawYieldSum += raw.Yield + stats.rawReadsSum += raw.ClusterCount + stats.pfReadsSum += pf.ClusterCount + stats.pfYieldQ30Sum += pf.YieldQ30 + stats.qualityScoreSum += pf.QualityScoreSum + + # Can not be set here, needs to be calculated later + #stats.rawPercentageReadsPerLane = rawPercentageReadsPerLane + stats.pfPercentage = stats.calculatePercentagePF(stats.rawYieldSum, stats.pfYieldSum) + stats.pfYieldQ30Percentage = stats.calculateYieldQ30Percentage(stats.pfYieldQ30Sum, stats.pfYieldSum) + stats.pfmeanQualityScore = stats.calulateMeanQualityScore(stats.qualityScoreSum, stats.pfYieldSum) + stats.lane = listofSamples[0].Lane.values()[0] + stats.sampleName = listofSamples[0].Sample.values()[0] + index = listofSamples[0].Barcode.values()[0] + try: + stats.index1, stats.index2 = index.split("-") + except: + stats.index1 = index + return stats + +# ----------------------------------------------------------------------------- + + +def rawReadSumPerSamples(stat): + ''' + Creates a dictionary with the lanes as keys + The values are a list where the elements are a dictionary again. + This dictionary has the sample names as key and the RawReadSum as value. + + Example: + {4': [{'BSSE-QGF-3434_C0NKPACXX': 248999502}], '7': [{'lane7': 123921974}, + {'BSSE-QGF-3527_C0NKPACXX': 38587703}, {'BSSE-QGF-3529_C0NKPACXX': 30130893}, + {'BSSE-QGF-3528_C0NKPACXX': 34519296}, {'BSSE-QGF-3526_C0NKPACXX': 34980179}]} + ''' + + laneDict = {} + for e in stat: + if e.lane not in laneDict: + laneDict[e.lane] = [{e.sampleName:e.rawReadsSum}] + else: + laneDict[e.lane].append({e.sampleName:e.rawReadsSum}) + return laneDict + +# ----------------------------------------------------------------------------- + +def createSumRawReadsPerLane(laneDict): + ''' + Creates a dictionary with lane as key and sum of Raw Reads as value: + {'1': 183180877, '3': 244968562, '2': 191496395, '5': 193466239, '4': 248999502, + '7': 262140045, '6': 257136830, '8': 209948449} + ''' + sumRawReadsDict = {} + for lane in laneDict: + sumRawReads = 0 + for sampleNameDict in laneDict[lane]: + sumRawReads += sampleNameDict.values()[0] + + sumRawReadsDict[lane] = sumRawReads + return sumRawReadsDict + +# ----------------------------------------------------------------------------- + +def createPercentagePerLane(laneDict, sumRawReadsDict): + ''' + Creates a dictionary with the sample Name as key and the percentage of raw reads related to + all reads in the same lane + {'lane7': 47.27, 'BSSE-QGF-3433_C0NKPACXX': 100.0, 'BSSE-QGF-3666_C0NKPACXX': 54.12} + ''' + + relRawReadsDict = {} + for lane in laneDict: + for sampleName in laneDict[lane]: + relRawReadsDict[sampleName.keys()[0]] = round(float(sampleName.values()[0]) / + float(sumRawReadsDict[lane]) * 100, 2) + return relRawReadsDict + +# ----------------------------------------------------------------------------- + +def locate(pattern, root): + '''Locate all files matching supplied filename pattern in and below + supplied root directory.''' + for path, dirs, files in os.walk(os.path.abspath(root)): + for filename in fnmatch.filter(files, pattern): + yield os.path.join(path, filename) + +# ----------------------------------------------------------------------------- + +def getVocabulary(transaction, vocabularyCode): + + vocabularyTermList = [] + vocabulary = transaction.getSearchService().searchForVocabulary(vocabularyCode) + if (vocabulary is None): + print 'VOCABULARY %s does not exist' % (vocabularyCode) + else: + print "Getting VOCABULARY: " + vocabulary.getCode() + for term in vocabulary.getTerms(): + vocabularyTermList.append(term.getCode()) + vocabularyTermList.sort() + return vocabularyTermList + +# ----------------------------------------------------------------------------- + +def getFlowCellMetaData (transaction,flowCellId): + + def sortedDictValues(adict): + keys = adict.keys() + keys.sort() + return map(adict.get, keys) + + search = transaction.getSearchService() + sc = SearchCriteria() + print('Searching FlowCell: '+ str(flowCellId)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId)); + foundFlowCells = search.searchForSamples(sc) + + try: + assert foundFlowCells.size() == 1 + except AssertionError: + print (str(foundFlowCells.size()) + \ + ' flow cells found which match the criterias: '+ flowCellId) + + fcPropertiesDict = {} + fcPropertyTypes = [] + + fcProperties = foundFlowCells[0].getSample().getProperties() + for property in fcProperties: + code = property.getPropertyType().getSimpleCode() + fcPropertyTypes.append(code) + fcPropertiesDict[code] = property.getValue() + + fcPropertyTypes.sort() + return fcPropertiesDict, fcPropertyTypes + + +# ----------------------------------------------------------------------------- + +def process(transaction): + ''' + Main + ''' + + FASTQ_DATA_SET_TYPE='FASTQ_GZ' + DEMUX_FILE='Flowcell_demux_summary.xml' + NO_INDEX='NOINDEX' + UNDETERMINED='UNDETERMINED' + + incomingPath = transaction.getIncoming().getPath() + name = transaction.getIncoming().getName() + + print('\n'+time.ctime()) + + fcPropertiesDict, fcPropertyTypes = getFlowCellMetaData(transaction, name) + print fcPropertiesDict + print fcPropertyTypes + + search_service = transaction.getSearchService() + + FileGenerator= locate(DEMUX_FILE, incomingPath) + DEMULTIPLEX_XML = FileGenerator.next() + + sampleList = xml2Memory(DEMULTIPLEX_XML) + + sa = sample() + sampleDict = {} + + # key = sample name, value = sample() + for element in range(0, len(sampleList)): + sa = sampleList[element] + # Check if new sample + if (sa.Sample is not sampleList[element - 1].Sample): + sampleName = sa.Sample.values()[0] + sampleDict[sampleName] = [sa] + else: + sampleDict[sampleName].append(sa) + + stat = [calculateStatistics(sampleDict[mysample]) for mysample in sampleDict] + + # calculate the relative amount of reads per index + laneDict = rawReadSumPerSamples(stat) + sumRawReadsDict = createSumRawReadsPerLane(laneDict) + relRawReadsDict = createPercentagePerLane(laneDict, sumRawReadsDict) + + # set the values in the object + for mye in stat: + mye.rawPercentageReadsPerLane = relRawReadsDict[mye.sampleName] + + def sampleSearch(Code=''): + sc = SearchCriteria() + numberOfLanes = 0 + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, Code)); + search_service = transaction.getSearchService() + foundSample = search_service.searchForSamples(sc) + if foundSample.size() > 0: + # Search for contained samples + sampleSc = SearchCriteria() + sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc)) + foundContainedSamples = search_service.searchForSamples(sampleSc) + numberOfLanes = foundContainedSamples.size() + return foundSample, foundContainedSamples, numberOfLanes + +#-------------------------------------------------------------------------------------------------------------------------------------- + + def searchDataSetsofSample(sample, index1, index2, DATA_SET_TYPE): + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample)); + search_service = transaction.getSearchService() + foundSample = search_service.searchForSamples(sc) + + dataSetSc = SearchCriteria() + # set the Search Criteria to an OR condition, default is AND + #dataSetSc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES) + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE)) + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("BARCODE", index1 )) + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("INDEX2", index2)) + dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc)) + foundDataSets = search_service.searchForDataSets(dataSetSc) + print "foundDataSets.size() "+ str(foundDataSets.size()) + for ds in foundDataSets: + print "Index1 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('BARCODE') + print "Index2 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('INDEX2') + + return foundDataSets + +#-------------------------------------------------------------------------------------------------------------------------------------- + + def getIndexesofDataSetsofSample(sample, DATA_SET_TYPE): + + index1List = [] + index2List = [] + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample)); + search_service = transaction.getSearchService() + foundSample = search_service.searchForSamples(sc) + + dataSetSc = SearchCriteria() + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE)) + dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc)) + foundDataSets = search_service.searchForDataSets(dataSetSc) + for ds in foundDataSets: + index1List.append(ds.getPropertyValue('BARCODE')) + index2List.append(ds.getPropertyValue('INDEX2')) + return index1List, index2List + + + flowcell, lanes, numberOfLanes = sampleSearch(name) + + index1Length = fcPropertiesDict['INDEXREAD'] + index2Length = fcPropertiesDict['INDEXREAD2'] + + for mystat in stat: + laneCode = flowcell[0].getCode() + ":" + mystat.lane + searchIndex1 = mystat.index1.upper() + searchIndex2 = mystat.index2.upper() + print '\n' + print mystat + + index1List, index2List = getIndexesofDataSetsofSample(laneCode, FASTQ_DATA_SET_TYPE) + print "Searching for "+ searchIndex1 + " in " + str(index1List) + print "Searching for "+ searchIndex2 + " in " + str(index2List) + + if searchIndex1 not in (NO_INDEX): + if searchIndex1 not in (UNDETERMINED): + if index1Length > 7: + searchIndex1 = [ index1 for index1 in index1List if searchIndex1 in index1] + else: + searchIndex1 = [ index1 for index1 in index1List if searchIndex1 in index1[:-1]] + try: + searchIndex1 = searchIndex1[0] + except: + searchIndex1 = 'MISSING' + else: + searchIndex1 = NO_INDEX + if searchIndex2 not in (NO_INDEX): + if searchIndex2 not in (UNDETERMINED): + if index2Length > 7: + searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2] + else: + searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2[:-1]] + try: + searchIndex2 = searchIndex2[0] + except: + searchIndex1 = 'MISSING' + else: + searchIndex2 = NO_INDEX + + print "searchIndex1 " + str(searchIndex1) + print "searchIndex2 " + str(searchIndex2) + + # Search for a data set with those two indices + DataSet = searchDataSetsofSample(laneCode, searchIndex1, searchIndex2, FASTQ_DATA_SET_TYPE) + try: + assert DataSet.size() == 1 + except AssertionError: + print (str(DataSet.size()) + ' data sets found which match the criterias: '+ + str(laneCode), searchIndex1, searchIndex2) + continue + + sa = transaction.getDataSetForUpdate(DataSet[0].getDataSetCode()) + sa.setPropertyValue('YIELD_MBASES', str(mystat.pfYieldSum)) + sa.setPropertyValue('RAW_YIELD_MBASES', str(mystat.rawYieldSum)) + sa.setPropertyValue('PERCENTAGE_PASSED_FILTERING',str(mystat.pfPercentage)) + sa.setPropertyValue('PF_READS_SUM',str(mystat.pfReadsSum)) + sa.setPropertyValue('RAW_READS_SUM',str(mystat.rawReadsSum)) + sa.setPropertyValue('PERCENTAGE_RAW_CLUSTERS_PER_LANE', str(mystat.rawPercentageReadsPerLane)) + sa.setPropertyValue('PFYIELDQ30PERCENTAGE', str(mystat.pfYieldQ30Percentage)) + sa.setPropertyValue('PFMEANQUALITYSCORE', str(mystat.pfmeanQualityScore)) + + print "Modified data sets properties of: " + DataSet[0].getDataSetCode() + + print "DONE" diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-rta-timestamp/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-rta-timestamp/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ef56111b768f0d12631d249469e5c942506f01f0 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-rta-timestamp/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/read-rta-timestamp +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = read-rta-timestamp.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py new file mode 100644 index 0000000000000000000000000000000000000000..1e68261b6dee7ad488c351a00203215175081ce5 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py @@ -0,0 +1,45 @@ +import os +import shutil +from time import * +from datetime import * +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +MarkerGAComplete = 'RTAComplete.txt' +MarkerHiSeqComplete = 'RTAComplete.txt' + +def createOpenbisTimeStamp(file): + ''' + Creates a openBIS compatible time stamp of a file time stamp + ''' + mtime = os.path.getmtime(file) + lt = localtime(mtime) + tz = localtime().tm_hour - gmtime().tm_hour + return (strftime("%Y-%m-%d %H:%M:%S GMT" + "%+.2d" % tz + ":00", lt)) + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incomingPath = transaction.getIncoming().getAbsolutePath() + # Get the incoming name + name = transaction.getIncoming().getName() + + split=name.split("_") + if (len(split) == 4): + IS_HISEQ_RUN=True + Markerfile = incomingPath + "/" + MarkerHiSeqComplete + if (len(split) == 2): + Markerfile = incomingPath + "/" + MarkerGAComplete + + + # Search for the sample and check if there is already sample with this name + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + sa = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier()) + sa.setPropertyValue("SEQUENCER_FINISHED", createOpenbisTimeStamp(Markerfile)) + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-basecall-stats/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-basecall-stats/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..d6e67945db5bcce4a1f3f1fa0c109a5d12b2544a --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-basecall-stats/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-basecall-stats +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-basecall-stats.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py new file mode 100644 index 0000000000000000000000000000000000000000..6efcd1eb5df94f044d973b3016379402ce66e1b6 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py @@ -0,0 +1,72 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX +expected incoming Name for MiSeq runs: 121218_M00721_0017_000000000-A0T19 + +@author: +Manuel Kohler +''' + +import os +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + incomingFolder = transaction.getIncoming().getName() + + folders=os.listdir(incomingPath) + + # expected incoming Name, e.g.: 110715_SN792_0054_BC035RACXX + + # Create a data set and set type + dataSet = transaction.createNewDataSet("BASECALL_STATS") + dataSet.setMeasuredData(False) + + dataSet.setPropertyValue("MISMATCH_IN_INDEX", "NONE") + + # Get the search service + search_service = transaction.getSearchService() + + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incomingPath)) + foundSamples = search_service.searchForSamples(sc) + + + if foundSamples.size() > 0: + dataSet.setSample(foundSamples[0]) + + # Search for another data set of the same sample + #dataSetSc = SearchCriteria() + #dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, 'ILLUMINA_HISEQ_OUTPUT')) + #dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc)) + #foundDataSets = search_service.searchForDataSets(dataSetSc) + #if foundDataSets.size() > 0: + # dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bigwig/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bigwig/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..26d6bb1da8dcadf2f6be9b6359117a8c8d039a2f --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bigwig/plugin.properties @@ -0,0 +1,10 @@ +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-bigwig/ +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-bigwig.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bigwig/register-bigwig.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bigwig/register-bigwig.py new file mode 100644 index 0000000000000000000000000000000000000000..31a0863709fb07a6f23a4912221d41763388ffd9 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bigwig/register-bigwig.py @@ -0,0 +1,140 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import os +import fnmatch +import re +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +FOLDER='/links/shared/dsu/dss/register-bigwig/' +BIGWIGINFO='/links/application/dsu/bigWig/bigWigInfo ' +BW_PATTERN='*.bw' + +matches = [] + +# ----------------------------------------------------------------------------- + +def listSearch (myList, searchString): + ''' + Searches for a given String in a list. + Only lines matching the start of a line a considerd as a match + ''' + matches = [] + for i in range (0, len(myList)): + if(re.match(searchString, myList[i])): + matches.append(myList[i]) + return (matches) + +# ----------------------------------------------------------------------------- + +def translateBoolean (value): + if (value.lower() == 'yes') | (value.lower() =='y'): + return True + else: + return False + +def sanitizeInt (intNumber): + return intNumber.replace(',','') + +# ----------------------------------------------------------------------------- + +def convertListToDict(prop): + d={} + for i in range(0,len(prop)-1): + lineSplit = prop[i].split(':') + d[lineSplit[0].strip()] = lineSplit[1].strip() + return(d) + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + name = transaction.getIncoming().getName() + + # Create a data set and set type + dataSet = transaction.createNewDataSet("BIGWIGGLE") + dataSet.setMeasuredData(False) + + # expected: + # Project_110907_SN792_0059_AC012FACXX_3/BSSE-DSU-1662_CGATGTA_L003_R1_001_sorted.bw + split=name.split('_') + if (len(split) == 6): + incoming_sample=split[1]+ '_'+ split[2] + '_' + split[3] + '_' + split[4]+ ':' + split[-1] + if (len(split) ==4): + incoming_sample=split[1]+ '_'+ split[2] + ':' + split[-1] + + # Looking for BWs: + for root, dirnames, filenames in os.walk(FOLDER + name): + for filename in fnmatch.filter(filenames, BW_PATTERN): + matches.append(os.path.join(root, filename)) + + # Extract values from a samtools view and set the results as DataSet properties + # Command: samtools view -H ETHZ_BSSE_110429_63558AAXX_1_sorted.bam + + arguments = BIGWIGINFO + matches[0] + #print('Arguments: '+ arguments) + cmdResult=os.popen(arguments).read() + + properties=cmdResult.split("\n") + dictProp = convertListToDict(properties) + #print(dictProp) + + dataSet.setPropertyValue("VERSION", dictProp['version']) + dataSet.setPropertyValue("ISCOMPRESSED", str(translateBoolean(dictProp['isCompressed']))) + dataSet.setPropertyValue("ISSWAPPED", dictProp['isSwapped']) + dataSet.setPropertyValue("PRIMARYDATASIZE", sanitizeInt(dictProp['primaryDataSize'])) + dataSet.setPropertyValue("PRIMARYINDEXSIZE", sanitizeInt(dictProp['primaryIndexSize'])) + dataSet.setPropertyValue("ZOOMLEVELS", dictProp['zoomLevels']) + dataSet.setPropertyValue("CHROMCOUNT", dictProp['chromCount']) + dataSet.setPropertyValue("BASESCOVERED", sanitizeInt(dictProp['basesCovered'])) + dataSet.setPropertyValue("MEAN", dictProp['mean']) + dataSet.setPropertyValue("MIN", dictProp['min']) + dataSet.setPropertyValue("MAX", dictProp['max']) + dataSet.setPropertyValue("STD", dictProp['std']) + + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + dataSet.setSample(foundSamples[0]) + + # Search for parent data set of the same sample + dataSetSc = SearchCriteria() + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, 'FASTQ_GZ')) + dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc)) + foundDataSets = search_service.searchForDataSets(dataSetSc) + if foundDataSets.size() > 0: + dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bowtie/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bowtie/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..f0fac2c142a23dfcfcc5e3fb1a9946f4fd182fb6 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bowtie/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-bowtie +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-bowtie.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bowtie/register-bowtie.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bowtie/register-bowtie.py new file mode 100644 index 0000000000000000000000000000000000000000..11f72f74fafb4fe45fc87e703982f83be83cd2ce --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-bowtie/register-bowtie.py @@ -0,0 +1,130 @@ +''' +This is handling bowtie-BAM files and extracts some properties from the BAM header and +the samtools flagstat command. The results are formatted and attached as a property +to the openBIS DataSet. +Prerequisites are the DataSetType: ALIGNMENT and +the following properties assigned to the DataSetType mentioned above: +ALIGNMENT_SOFTWARE, ISSUED_COMMAND, SAMTOOLS_FLAGSTAT, +TOTAL_READS, MAPPED_READS + +Obviously you need a working samtools binary + +Uses 'flagstat' and 'view -H' +''' + +import os +import fnmatch +import re +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +FOLDER='/links/shared/dsu/dss/register-bowtie/' +SAMTOOLS='/links/application/dsu/samtools/samtools' +BAM_PATTERN='*.bam' + +matches = [] +searchStrings = ['@PG'] +programList = [] + +# ----------------------------------------------------------------------------- + +def listSearch (myList, searchString): + ''' + Searches for a given String in a list. + Only lines matching the start of a line a considerd as a match + ''' + matches = [] + for i in range (0, len(myList)): + if(re.match(searchString, myList[i])): + matches.append(myList[i]) + return (matches) + +# ----------------------------------------------------------------------------- + +def programParameters (programList): + ''' + Extracts the aligner datils from the bam header + ''' + elements = {} + for program in range(0, len(programList)): + line = programList[program].split('\t') + + for element in range (1, len(line)): + key, value = line[element].split(":") + elements[key] = value + + return elements + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incomingPath = transaction.getIncoming().getName() + + dataSet = transaction.createNewDataSet("ALIGNMENT") + dataSet.setMeasuredData(False) + + # Get the incoming name + # expected: + # Project_110907_SN792_0059_AC012FACXX_3/Sample_BSSE-DSU-1662/BSSE-DSU-1662_CGATGTA_L003_R1_001_sorted.bam + split=incomingPath.split('_') + if (len(split) == 6): + incoming_sample=split[1]+ '_'+ split[2] + '_' + split[3] + '_' + split[4]+ ':' + split[-1] + if (len(split) ==4): + incoming_sample=split[1]+ '_'+ split[2] + ':' + split[-1] + + # Looking for BAMS: + for root, dirnames, filenames in os.walk(FOLDER + incomingPath): + for filename in fnmatch.filter(filenames, BAM_PATTERN): + matches.append(os.path.join(root, filename)) + + # Extract values from a samtools view and set the results as DataSet properties + # Command: samtools view -H ETHZ_BSSE_110429_63558AAXX_1_sorted.bam + + arguments = SAMTOOLS + ' view -H ' + matches[0] + print('Arguments: '+ arguments) + cmdResult=os.popen(arguments).read() + + properties=cmdResult.split("\n") + for s in range (0, len(searchStrings)): + programList = listSearch (properties, searchStrings[s]) + print(programList) + + e = programParameters (programList) + + dataSet.setPropertyValue("ALIGNMENT_SOFTWARE", e['ID']) + dataSet.setPropertyValue("VERSION", e['VN']) + dataSet.setPropertyValue("ISSUED_COMMAND", e['CL']) + + + arguments = SAMTOOLS + ' flagstat ' + matches[0] + + cmdResult=os.popen(arguments).read() + totalReads=cmdResult.split('\n')[0].split(' ')[0] + mappedReads=cmdResult.split('\n')[2].split(' ')[0] + + dataSet.setPropertyValue("SAMTOOLS_FLAGSTAT", cmdResult) + dataSet.setPropertyValue("TOTAL_READS", totalReads) + dataSet.setPropertyValue("MAPPED_READS", mappedReads) + + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + dataSet.setSample(foundSamples[0]) + + # Search for parent data set of the same sample + dataSetSc = SearchCriteria() + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, 'FASTQ_GZ')) + dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc)) + foundDataSets = search_service.searchForDataSets(dataSetSc) + if foundDataSets.size() > 0: + dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-fastqc/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-fastqc/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..353a2b7aa8a30b04423e2ffb0645814123ce71f4 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-fastqc/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-fastqc +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-fastqc.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-fastqc/register-fastqc.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-fastqc/register-fastqc.py new file mode 100644 index 0000000000000000000000000000000000000000..26c09f2d4afb5c1a474d8a595efa86334371ce69 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-fastqc/register-fastqc.py @@ -0,0 +1,73 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@note +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +Expects as incoming folder: Project_120427_SN792_0110_AD0YCGACXX_1 + +@author: +Manuel Kohler +''' + +import os +import shutil +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +def renameFiles(dir, flowcellName): + print dir + print flowcellName + for root, dirs, files in os.walk(dir): + for file in files: + print root + file + os.rename(root + '/' + file, root + "/" + flowcellName + "_" + file) + + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + incomingFolder = transaction.getIncoming().getName() + + fcAndLane = incomingFolder.split("_",1)[-1] + flowCell, flowLane = fcAndLane.rsplit("_",1) + print flowLane + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCell)) + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + + # Search for another data set of the same sample and make it a child of it + sampleSc = SearchCriteria() + sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc)) + foundContainedSamples = search_service.searchForSamples(sampleSc) + if foundContainedSamples.size() > 0: + dataSet = transaction.createNewDataSet("FASTQC") + dataSet.setMeasuredData(False) + for indx in range(0, len(foundContainedSamples)): + lane = foundContainedSamples[indx].getCode().split(':')[-1] + print lane + if (flowLane == lane): + dataSet.setSample(foundContainedSamples[indx]) + # Add the incoming file into the data set + transaction.moveFile(incomingPath + "/fastqc/", dataSet) + break diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-dropbox/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9c4e3bbc2c1fb133d0252bd6b50036a083078b02 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-dropbox/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-register-flowcell +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-flowcell-dropbox.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-dropbox/register-flowcell-dropbox.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-dropbox/register-flowcell-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..48c1f20c76e8b29fb433e5f8fbc8d8b1d65ef42c --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-dropbox/register-flowcell-dropbox.py @@ -0,0 +1,66 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +IS_HISEQ_RUN = False + +DATASET_TYPE_HISEQ = "ILLUMINA_HISEQ_OUTPUT" +DATASET_TYPE_GA = "ILLUMINA_GA_OUTPUT" + +def process(transaction): + + incomingPath = transaction.getIncoming().getAbsolutePath() + + # Get the incoming name + name = transaction.getIncoming().getName() + + split = name.split("_") + if (len(split) == 4): + dataSet = transaction.createNewDataSet(DATASET_TYPE_HISEQ) + IS_HISEQ_RUN = True + if (len(split) == 2): + dataSet = transaction.createNewDataSet(DATASET_TYPE_GA) + + # Create a data set and set type + dataSet.setMeasuredData(False) + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + dataSet.setSample(foundSamples[0]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..8730e628162fd815db73599ea7cf4b7025b6a00b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-flowcell-hiseq +#incoming-dir = /links/sonas/cisd/store/incoming-flowCell +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-flowcell-hiseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-hiseq/register-flowcell-hiseq.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-hiseq/register-flowcell-hiseq.py new file mode 100644 index 0000000000000000000000000000000000000000..3048b4473d30543fbcadf3fb4ee8063aed05f926 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-hiseq/register-flowcell-hiseq.py @@ -0,0 +1,97 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import os +import shutil +import glob +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +IS_HISEQ_RUN=False + +RUNINFO_FOLDER='/links/shared/dsu/dss/register-runstatistics/' +REGEX_RUNINFO_SAMPLE = '/Data/Status*' +REGEX_RUNINFO_REPORTS = '/Data/reports' +MARKER_STRING='.MARKER_is_finished_' + +def touch_markerfile(filename): + try: + # do a touch + open(filename, 'w').close() + except: + print('Could not touch ' + filename) + + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + name = transaction.getIncoming().getName() + + folders=[] + folders=os.listdir(incomingPath) + + split=name.split("_") + if (len(split) == 4): + dataSet = transaction.createNewDataSet("ILLUMINA_HISEQ_OUTPUT") + IS_HISEQ_RUN=True + if (len(split) == 2): + dataSet = transaction.createNewDataSet("ILLUMINA_GA_OUTPUT") + + #move RunInfo into a different drop box + runInfoSample=glob.glob(incomingPath + REGEX_RUNINFO_SAMPLE) + runInfoReport=glob.glob(incomingPath + REGEX_RUNINFO_REPORTS) + runInfoList = runInfoSample + runInfoReport + os.makedirs(RUNINFO_FOLDER + name + '/Data/') + for runInfo in runInfoList: + try: + if os.path.isdir(runInfo): + shutil.copytree(runInfo, RUNINFO_FOLDER + name + '/Data/' + os.path.basename(runInfo)) + else: + shutil.copy2(runInfo, RUNINFO_FOLDER + name + '/Data/') + except (IOError, os.error), why: + print (runInfo, RUNINFO_FOLDER + name, str(why)) + + touch_markerfile(RUNINFO_FOLDER+MARKER_STRING+name) + + # Create a data set and set type + dataSet.setMeasuredData(False) + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + dataSet.setSample(foundSamples[0]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-miseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-miseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..7f274a70db5ba39005bf8934437666fdbfdccda0 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-miseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-flowcell-miseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-flowcell-miseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-miseq/register-flowcell-miseq.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-miseq/register-flowcell-miseq.py new file mode 100644 index 0000000000000000000000000000000000000000..c9321e6c87eb162eeee01ea5a05a815d8563bf18 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-flowcell-miseq/register-flowcell-miseq.py @@ -0,0 +1,60 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for MiSeq runs: 120726_M00721_0011_A000000000-A1FVF + +@author: +Manuel Kohler +''' + +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +DATASET_TYPE_MISEQ = "ILLUMINA_MISEQ_OUTPUT" + +def process(transaction): + + incomingPath = transaction.getIncoming().getAbsolutePath() + flowCellId = transaction.getIncoming().getName() + dataSet = transaction.createNewDataSet(DATASET_TYPE_MISEQ) + + # Create a data set and set type + dataSet.setMeasuredData(False) + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId)); + foundFlowCells = search_service.searchForSamples(sc) + + # Make sure there is only one Flow cell registered with this Flow Cell Name / ID + try: + assert foundFlowCells.size() == 1 + except AssertionError: + print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId) + + print (foundFlowCells) + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + dataSet.setSample(foundFlowCells[0]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-hiseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-hiseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..f7523f7cdec8ed261c78152f3007f7bb9947f79b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-hiseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-lane-hiseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-lane-hiseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py new file mode 100644 index 0000000000000000000000000000000000000000..8279053de36ebaeab370e68f70a0352d3dfed7de --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py @@ -0,0 +1,279 @@ +''' +Processes each flow lane of a Sequencing run + +Expects as incoming folder: +Project_<Flow Cell>_<Lane> +e.g.Project_110715_SN792_0054_BC035RACXX_1 or Project_110816_6354LAAXX_1 + +Note: +print statements go to: ~openbis/sprint/datastore_server/log/startup_log.txt +''' + +import os +import fnmatch +import time +import shutil +from time import * +from datetime import * +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +FASTQ_GZ_PATTERN = "*.fastq.gz" +METADATA_FILE_SUFFIX = "_metadata.tsv" +AFFILIATION= {'FMI': '/links/shared/dsu/dss/customers/fmi/drop-box/','BIOCENTER_BASEL': '/links/shared/dsu/dss/customers/biozentrum/drop-box/'} +AFFILIATION_PROPERTY_NAME='AFFILIATION' +INDEX1='BARCODE' +INDEX2='INDEX2' +EXTERNAL_SAMPLE_NAME='EXTERNAL_SAMPLE_NAME' + +DEFAULT_INDEX='NoIndex' + +# ------------------------------------------------------------------------------- + +def getFileNames(path): + ''' + Gets all files matching a PATTERN in a path recursively + and returns the result as a list + ''' + matches = [] + for root, dirnames, filenames in os.walk(path): + for filename in fnmatch.filter(filenames, FASTQ_GZ_PATTERN): + matches.append(os.path.join(root, filename)) + matches.sort() + return(matches) + +def writeMetadataFile (fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList): + ''' + Writes a file of meta date related to one sample + ''' + try: + metaDataFile = open(fileName,'w') + for propertyType in parentPropertyTypes: + metaDataFile.write(propertyType.encode('utf-8') + "\t" + + parentPropertiesMap[propertyType].tryGetAsString().encode('utf-8') + "\n") + + metaDataFile.write("\nFLOWCELL PROPERTIES\n".encode('utf-8')) + + for fcMetaData in fcMetaDataList: + metaDataFile.write(fcMetaData.encode('utf-8') + "\t" + + fcMetaDataDict[fcMetaData].tryGetAsString().encode('utf-8') + "\n") + pass + except IOError: + print ('File error, could not write '+ fileName) + finally: + metaDataFile.close() + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +def extraCopy (affiliation_name, path): + ''' + Handles the extra copies of the data for transfer with datamover via the + bc2 network to the FMI and BIOCENTER + For the BIOCENTER there is a folder created in which all data gets into + ''' + if (affiliation_name in AFFILIATION): + if (affiliation_name == 'BIOCENTER_BASEL'): + dirname = AFFILIATION[affiliation_name] + datetime.now().strftime("%Y-%m-%d") + if not os.path.exists(dirname): + os.mkdir(dirname) + shutil.copy(path, dirname) + else: + shutil.copy(path, AFFILIATION[affiliation_name]) +# ------------------------------------------------------------------------------- + +def getFlowCellMetaData (transaction, flowCellId): + + def sortedDictValues(adict): + keys = adict.keys() + keys.sort() + return map(adict.get, keys) + + search = transaction.getSearchService() + sc = SearchCriteria() + print('Searching FlowCell: '+ str(flowCellId)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId)); + foundFlowCells = search.searchForSamples(sc) + + try: + assert foundFlowCells.size() == 1 + except AssertionError: + print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId) + + fcPropertiesDict = {} + fcPropertyTypes = [] + + fcProperties = foundFlowCells[0].getSample().getProperties() + for property in fcProperties: + code = property.getPropertyType().getSimpleCode() + fcPropertyTypes.append(code) + fcPropertiesDict[code] = property + + fcPropertyTypes.sort() + return fcPropertiesDict, fcPropertyTypes + +# ------------------------------------------------------------------------------- + +def searchParents (search_service, parents): + + # search for the parents + sc = SearchCriteria() + # set the Search Criteria to an OR condition, default is AND + sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES) + # Get the codes for all parents + for parent in parents: + parentSubCode = parent.getSubCode() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode)); + # all parents of the flow lane + foundParents = search_service.searchForSamples(sc) + + return foundParents + +# ------------------------------------------------------------------------------- + + +def process(transaction): + + # useful for debugging: + print(datetime.now()) + + incomingPath = transaction.getIncoming().getAbsolutePath() + name = transaction.getIncoming().getName() + + folders=[] + folders=os.listdir(incomingPath) + + # expected incoming Name, e.g.: Project_110715_SN792_0054_BC035RACXX_1 + split=name.split("_") + if (len(split) == 6): + runningDate = split[1] + sequencerId = split[2] + sequentialNumber = split[3] + hiseqTray = split[4][0] + flowCellId = split[4][1:] + flowLane = split[-1] + incoming_sample=runningDate+ '_'+ sequencerId + '_' + sequentialNumber + '_' + hiseqTray + flowCellId + ':' + flowLane + # expected Project_120112_63537AAXX_1 + if (len(split) ==4): + runningDate = split[1] + flowCellId = split[2] + flowLane = split[-1] + incoming_sample=runningDate+ '_'+ flowCellId + ':' + flowLane + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the incoming_sample which is a Flow Lane + sc = SearchCriteria() + print('Processing sample: '+ str(incoming_sample)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample)); + foundSamples = search_service.searchForSamples(sc) + + # there should be only one sample because it is unique within one Flow Cell + if (len(foundSamples) > 1): + raise Exception("More than one sample found! No unique code: " + incoming_sample) + elif (len(foundSamples) == 0): + raise Exception("No matching sample found for: " + incoming_sample) + else : + sample = foundSamples[0].getSample() + parents = sample.getParents() + + foundParents = searchParents(search_service, parents) + + # ------------------------------------------------------------------------------- + + # loop over each Sample folder within a lane + for f in range(0,len(folders)): + # Create a data set and set type + dataSet = transaction.createNewDataSet("FASTQ_GZ") + dataSet.setMeasuredData(False) + dataSet.setPropertyValue(INDEX1, DEFAULT_INDEX) + dataSet.setPropertyValue(INDEX2, DEFAULT_INDEX) + dirName = transaction.createNewDirectory(dataSet,folders[f]) + + # if multiplexed samples then there is more than one folder + pathPerLane = incomingPath + '/' + folders[f] + print ("pathPerLane: " + pathPerLane) + + # get all properties of the parent samples + for foundParent in foundParents: + parent = foundParent.getSample() + # ArrayList + parentProperties = parent.getProperties() + # just get the current code + parentCode = parent.getCode() + #print("Found parent code: "+ parentCode) + + # reformat Java ArrayList and Sort + parentPropertyTypes = [] + parentPropertiesMap = {} + for property in parentProperties: + code = property.getPropertyType().getSimpleCode() + parentPropertyTypes.append(code) + parentPropertiesMap[code] = property + try: + barcode = parentPropertiesMap[INDEX1].tryGetAsString() + if barcode == "NOINDEX": + barcode = DEFAULT_INDEX + else: + barcode.split()[-1][:-1] + except: + barcode = DEFAULT_INDEX + + try: + index2 = parentPropertiesMap[INDEX2].tryGetAsString() + if index2 == "NOINDEX": + index2 = DEFAULT_INDEX + else: + index2.split()[-1][:-1] + except: + index2 = DEFAULT_INDEX + + # just use the first six nucleotides for the naming + completeBarcode=barcode + "-" + index2 + + parentPropertyTypes.sort() + # BSSE-1754_C0364ACXX_CTTGTAA-AACC_L007_R1_001.fastq.gz + # BSSE_QGF_10002_121130_SN792_0189_AD1FBTACXX_1_NoIndex_L001_R1_001.fastq.gz + nameOfFile = parentCode.replace('-','_') + "_" + incoming_sample.replace(':', '_') + "_" + completeBarcode + "_L00" + flowLane +METADATA_FILE_SUFFIX + + print folders[f] + folderSplit = '-'.join(folders[f].split('_')[1:4]) + print "Folder split: " + folderSplit + print str(parentCode) + + if (parentCode == folderSplit): + dataSet.setPropertyValue(INDEX1, barcode) + dataSet.setPropertyValue(INDEX2, index2) + print parentPropertiesMap[EXTERNAL_SAMPLE_NAME].tryGetAsString() + dataSet.setPropertyValue(EXTERNAL_SAMPLE_NAME, parentPropertiesMap[EXTERNAL_SAMPLE_NAME].tryGetAsString()) + print("Creating metadata file:" + nameOfFile) + # get a file from the IDataSetRegistrationTransaction so it is automatically part of the data set + pathToFile = transaction.createNewFile(dataSet, folders[f], nameOfFile) + + fcMetaDataDict, fcMetaDataList = getFlowCellMetaData(transaction, incoming_sample.split(":")[0]) + writeMetadataFile(pathToFile, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList) + + affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString() + extraCopy (affiliation_name, pathToFile) + + # get all fastqs in this dataSet + fastqFileList=getFileNames(pathPerLane) + + # put the files into the dataSet + affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString() + for file in fastqFileList: + extraCopy (affiliation_name, file) + # finally add the files to the data set + transaction.moveFile(file , dataSet, folders[f]) + + if foundSamples.size() > 0: + sa = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier()) + sa.setPropertyValue("DATA_TRANSFERRED", create_openbis_timestamp()) + dataSet.setSample(foundSamples[0]) + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-miseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-miseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..51c2eec3813da5c39b0241cf23c7ccdbcb611655 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-miseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-lane-miseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-lane-miseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-miseq/register-lane-miseq.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-miseq/register-lane-miseq.py new file mode 100644 index 0000000000000000000000000000000000000000..5174af1295cd0755705b5ade12fa7e9629416b9d --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-lane-miseq/register-lane-miseq.py @@ -0,0 +1,203 @@ +''' +Processes each flow lane of a Sequencing run + +Note: +print statements go to: ~openbis/sprint/datastore_server/log/startup_log.txt +''' + +import os +import fnmatch +import time +import shutil +from time import * +from datetime import * +from itertools import islice, chain +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +FASTQ_GZ_PATTERN = "*.fastq.gz" +METADATA_FILE_SUFFIX = "_metadata.tsv" + +# ------------------------------------------------------------------------------- + +def getFileNames(path): + ''' + Gets all files matching a PATTERN in a path recursively + and returns the result as a list + ''' + matches = [] + for root, dirnames, filenames in os.walk(path): + for filename in fnmatch.filter(filenames, FASTQ_GZ_PATTERN): + matches.append(os.path.join(root, filename)) + matches.sort() + return(matches) + +def writeMetadataFile (fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList): + ''' + Writes a file of meta date related to one sample + ''' + try: + metaDataFile = open(fileName,'w') + for propertyType in parentPropertyTypes: + metaDataFile.write(propertyType.encode('utf-8') + "\t" + + parentPropertiesMap[propertyType].tryGetAsString().encode('utf-8') + "\n") + + metaDataFile.write("\nFLOWCELL PROPERTIES\n".encode('utf-8')) + + for fcMetaData in fcMetaDataList: + metaDataFile.write(fcMetaData.encode('utf-8') + "\t" + + fcMetaDataDict[fcMetaData].tryGetAsString().encode('utf-8') + "\n") + pass + except IOError: + print ('File error, could not write '+ fileName) + finally: + metaDataFile.close() + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +def extraCopy (affiliationName, path): + ''' + Handles the extra copies of the data for transfer with datamover via the + bc2 network to the FMI and BIOCENTER + For the BIOCENTER there is a folder created in which all data gets into + ''' + if (affiliation_name in AFFILIATION): + if (affiliation_name == 'BIOCENTER_BASEL'): + dirname = AFFILIATION[affiliation_name] + datetime.now().strftime("%Y-%m-%d") + if not os.path.exists(dirname): + os.mkdir(dirname) + shutil.copy(path, dirname) + else: + shutil.copy(path, AFFILIATION[affiliation_name]) +# ------------------------------------------------------------------------------- + +def getFlowCellMetaData (flowCellId): + + def sortedDictValues(adict): + keys = adict.keys() + keys.sort() + return map(adict.get, keys) + + search = transaction.getSearchService() + sc = SearchCriteria() + print('Searching FlowCell: '+ str(flowCellId)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId)); + foundFlowCells = search.searchForSamples(sc) + + try: + assert foundFlowCells.size() == 1 + except AssertionError: + print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId) + + fcPropertiesDict = {} + fcPropertyTypes = [] + + fcProperties = foundFlowCells[0].getSample().getProperties() + for property in fcProperties: + code = property.getPropertyType().getSimpleCode() + fcPropertyTypes.append(code) + fcPropertiesDict[code] = property + + fcPropertyTypes.sort() + return fcPropertiesDict, fcPropertyTypes + + +# ------------------------------------------------------------------------------- + +def searchForLane(lane, search_service): + + sc = SearchCriteria() + print('Processing sample: '+ str(lane)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, lane)); + foundSamples = search_service.searchForSamples(sc) + + # there should be only one sample because it is unique within one Flow Cell + if (len(foundSamples) > 1): + raise Exception("More than one sample found! No unique code: " + lane) + elif (len(foundSamples) == 0): + raise Exception("No matching sample found for: " + lane) + else : + foundLane = foundSamples[0] + + return foundLane + + +# ------------------------------------------------------------------------------- + +def searchForParents (parents, search_service): + # search for the parents + sc = SearchCriteria() + # set the Search Criteria to an OR condition, default is AND + sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES) + # Get the codes for all parents + for parent in parents: + parentSubCode = parent.getSubCode() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode)); + # all parents of the flow lane + foundParents = search_service.searchForSamples(sc) + return foundParents + + +# ------------------------------------------------------------------------------- +''' +def batch(iterable, size): + sourceiter = iter(iterable) + while True: + batchiter = islice(sourceiter, size) + yield chain([batchiter.next()], batchiter) +''' +# ------------------------------------------------------------------------------- + +def process(transaction): + + # useful for debugging: + print(datetime.now()) + + incomingPath = transaction.getIncoming().getAbsolutePath() + + # Get the incoming name + name = transaction.getIncoming().getName() + miSeqLane = name + ':1' + + # Get the search service + search_service = transaction.getSearchService() + + lane = searchForLane(miSeqLane, search_service) + + # get all fastqs in this dataSet + fastqFileList=getFileNames(incomingPath) + fastqFileList.sort() + + while fastqFileList: + + # Create a data set and set type + dataSet = transaction.createNewDataSet("FASTQ_GZ") + dataSet.setMeasuredData(False) + if len(fastqFileList) == 1: + transaction.moveFile(fastqFileList.pop(0) , dataSet) + else: + try: + currentFullPath , currentFilename = os.path.split(fastqFileList[0]) + nextFullPath , nextFilename = os.path.split(fastqFileList[1]) + + newpath = currentFullPath + "/fastq" + if not os.path.exists(newpath): + os.makedirs(newpath) + + if currentFilename.rsplit('_',2)[0] == nextFilename.rsplit('_',2)[0]: + shutil.move(fastqFileList.pop(0), newpath) + shutil.move(fastqFileList.pop(0), newpath) + transaction.moveFile(newpath , dataSet) + else: + transaction.moveFile(fastqFileList.pop(0) , dataSet) + except: + pass + dataSet.setSample(lane) + + sa = transaction.getSampleForUpdate(lane.getSampleIdentifier()) + sa.setPropertyValue("DATA_TRANSFERRED", create_openbis_timestamp()) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-macs/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-macs/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9d5511bd58c89dd27ce13ca63e47bf838d542bab --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-macs/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-macs +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-macs.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-macs/register-macs.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-macs/register-macs.py new file mode 100644 index 0000000000000000000000000000000000000000..17a9d5b074ca2038531cb770bbe4468c25d22225 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-macs/register-macs.py @@ -0,0 +1,22 @@ + +def process(transaction): + # Create a data set and set type + dataSet = transaction.createNewDataSet("MACS_OUTPUT") + dataSet.setPropertyValue("MACS_VERSION", "1.4.0RC2") + dataSet.setMeasuredData(False) + + incomingPath = incoming.getAbsolutePath() + + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + + # rsplit not in Python 2.2 + #sampleName = ":".join(incomingPath.split("/")[-1].rsplit("_",1)) + flowCell = "_".join((incomingPath.split("/")[-1].split("_")[2:-1])) + lane = (incomingPath.split("/")[-1]).split("_")[-1] + sampleName = flowCell + ":" + lane + + # Set the owner of the data set -- the specified sample + sample = transaction.getSample("/BSSE_BEISEL/" + sampleName) + + dataSet.setSample(sample) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-runstatistics/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-runstatistics/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..8572688f22411a37ed1f5632e4410ad5944c439b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-runstatistics/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-runstatistics +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-runstatistics.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-runstatistics/register-runstatistics.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-runstatistics/register-runstatistics.py new file mode 100644 index 0000000000000000000000000000000000000000..d7b8b8400d33aa61b42ecf6cee6b7fa3c23d5165 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-runstatistics/register-runstatistics.py @@ -0,0 +1,73 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import os +import shutil +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + incomingFolder = transaction.getIncoming().getName() + + folders=[] + folders=os.listdir(incomingPath) + + split=incomingFolder.split("_") + if (len(split) == 4): + IS_HISEQ_RUN=True + if (len(split) == 2): + IS_HISEQ_RUN=False + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incomingFolder)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + + # Search for another data set of the same sample and make it a child of it + sampleSc = SearchCriteria() + sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc)) + foundContainedSamples = search_service.searchForSamples(sampleSc) + if foundContainedSamples.size() > 0: + for fcs in range(0,foundContainedSamples.size()): + dataSet = transaction.createNewDataSet("RUNINFO") + dataSet.setMeasuredData(False) + dataSet.setSample(foundContainedSamples[fcs]) + # Add the incoming file into the data set + shutil.copytree(incomingPath, incomingPath + "_" + str(fcs+1)) + transaction.moveFile(incomingPath + "_" + str(fcs+1), dataSet) + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-thumbnails/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-thumbnails/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..5b89e279f2f7570eaf55c26d183c4a2ff102de2f --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-thumbnails/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-thumbnails +#incoming-dir = /links/sonas/cisd/store/incoming-flowCell +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-thumbnails.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-thumbnails/register-thumbnails.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-thumbnails/register-thumbnails.py new file mode 100644 index 0000000000000000000000000000000000000000..60937ed4520f013555638718adc54297f27880eb --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-thumbnails/register-thumbnails.py @@ -0,0 +1,55 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + name = transaction.getIncoming().getName() + + dataSet = transaction.createNewDataSet("THUMBNAILS") + + # Create a data set and set type + dataSet.setMeasuredData(False) + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + dataSet.setSample(foundSamples[0]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-unaligned/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-unaligned/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9c8c317b60db9215ca0b0c60a150018e92930dc1 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-unaligned/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-unaligned +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-unaligned.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-unaligned/register-unaligned.py b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-unaligned/register-unaligned.py new file mode 100644 index 0000000000000000000000000000000000000000..8b82056105601367e3902ecd1510884b1c2e53a1 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/drop-boxes/register-unaligned/register-unaligned.py @@ -0,0 +1,179 @@ +''' +@copyright: +2012 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Expects as incoming folder: <FlowCell>/Unaligned_no_mismatch + +@note: + +@author: +Manuel Kohler +''' + +import os +import glob +import shutil +import time +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +BASECALL_STATS_FOLDER = 'Basecall_Stats_' +REGEX_FILES = '*.*' +REGEX_MAKEFILE = 'Make*' +REGEX_LANES='/P*' +REGEX_UNDETERMINED = '/U*/Sample*' +UNALIGNED_FOLDER='Unaligned_no_mismatch' +LANE_FOLDER='/links/shared/dsu/dss/register-lane-hiseq/' +MARKER_STRING='.MARKER_is_finished_' + +def touch_markerfile(filename): + try: + # do a touch + open(filename, 'w').close() + except: + print('Could not touch ' + filename) + +def searchForLaneParents(transaction, sampleCode): + + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sampleCode)) + foundSamples = search_service.searchForSamples(sc) + # there should be only one sample because it is unique within one Flow Cell + if (len(foundSamples) > 1): + raise Exception("More than one sample found! No unique code: " + sampleCode) + elif (len(foundSamples) == 0): + raise Exception("No matching sample found for: " + sampleCode) + else : + sample = foundSamples[0].getSample() + parents = sample.getParents() + + # search for the parents + sc = SearchCriteria() + # set the Search Criteria to an OR condition, default is AND + sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES) + # Get the codes for all parents + for parent in parents: + parentSubCode = parent.getSubCode() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode)); + # all parents of the flow lane + foundParents = search_service.searchForSamples(sc) + + parentCodeList = [] + + for foundParent in foundParents: + parent = foundParent.getSample() + # ArrayList + parentProperties = parent.getProperties() + # just get the current code + parentCode = parent.getCode() + parentCodeList.append(parentCode) + #print("Found parent code: "+ parentCode) + + return parentCodeList + + +def renameFiles(transaction, dir, flowcellName): + # Limit of Samples when the Sample Code is still used in the renaming. If Number of Samples is + # bigger than this number, we just write the number in the file name. + + MAX_SAMPLES = 20 + FACILITY_CODE = "BSSE_QGF_" + + for root, dirs, files in os.walk(dir): + for file in files: + lane = file.split("_")[0][-1] + if lane.isdigit(): + sampleCode = flowcellName + ":" + lane + print sampleCode + parentCodeList = searchForLaneParents(transaction, sampleCode) + print parentCodeList + length = len(parentCodeList) + if length > MAX_SAMPLES: + # BSSE_QGF_96_samples_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz + os.rename(root + '/' + file, root + "/" + FACILITY_CODE + str(length) + "_samples_" + flowcellName + "_" + file) + else: + # BSSE_QGF_10001_10002_10003_10004_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz + SampleCodeString = "_".join([(e.split("-")[-1]) for e in parentCodeList]) + os.rename(root + '/' + file, root + "/" + FACILITY_CODE + SampleCodeString + "_" + flowcellName + "_" + file) + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + name = transaction.getIncoming().getName() + + split=name.split("_") + if (len(split) == 4): + DSTYPE='ILLUMINA_HISEQ_OUTPUT' + flowcell=name.split("_")[-1][1:] + if (len(split) ==2): + DSTYPE='ILLUMINA_GA_OUTPUT' + flowcell=name.split("_")[-1] + + #move Lanes into a different drop box + laneList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + REGEX_LANES) + laneList.sort() + + undeterminedList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + REGEX_UNDETERMINED) + undeterminedList.sort() + + # add the Flow Cell Name to the Undetermined FASTQ files + [renameFiles(transaction, dir, name) for dir in undeterminedList] + + # Multiplexing: + # First move the Undetermined reads to the other ones + [shutil.move(undeterminedLane, laneList[int(undeterminedLane.split('/')[-1][-1])-1] +'/' + undeterminedLane.split('/')[-1]) for undeterminedLane in undeterminedList] + + [shutil.move(lane, LANE_FOLDER+lane.split('/')[-1]) for lane in laneList] + markerFileList = [touch_markerfile(LANE_FOLDER+MARKER_STRING+lane.split('/')[-1]) for lane in laneList] + + # Create a data set and set type + dataSet = transaction.createNewDataSet("BASECALL_STATS") + dataSet.setMeasuredData(False) + + # Build up a list of file which are part of the data set + fileList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + '/' + REGEX_FILES) + [fileList.append(i) for i in glob.glob(incomingPath + '/' + UNALIGNED_FOLDER +'/' +REGEX_MAKEFILE)] + + # Add the incoming file into the data set + transaction.createNewDirectory(dataSet, UNALIGNED_FOLDER) + # move all files is data set + [transaction.moveFile(file, dataSet, UNALIGNED_FOLDER) for file in fileList] + # move base call stat dir into data set + print("flowcell: "+flowcell) + transaction.moveFile(incomingPath + '/' + UNALIGNED_FOLDER + '/' + BASECALL_STATS_FOLDER + flowcell, dataSet, UNALIGNED_FOLDER + '/') + + # Get the search service + search_service = transaction.getSearchService() + + # Search for the sample + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name)) + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + dataSet.setSample(foundSamples[0]) + + # Search for another data set of the same sample and make it a child of it + dataSetSc = SearchCriteria() + dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DSTYPE)) + dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc)) + foundDataSets = search_service.searchForDataSets(dataSetSc) + if foundDataSets.size() > 0: + dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets]) + + shutil.rmtree(incomingPath) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/maintenance-tasks/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/maintenance-tasks/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/reporting-plugins/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/reporting-plugins/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/1/dss/services/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/1/dss/services/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/as/initialize-master-data.py b/js-test/servers/common/core-plugins/illumina-ngs/2/as/initialize-master-data.py new file mode 100644 index 0000000000000000000000000000000000000000..98efc949fc5c0fed4dd1b41b8c5fcc8c0f0e8c5a --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/as/initialize-master-data.py @@ -0,0 +1,2919 @@ +# -*- coding: utf-8 -*- +import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType + +print ("Importing Master Data...") + +tr = service.transaction() + + +file_type_FASTQ_PHRED_64 = tr.getOrCreateNewFileFormatType('FASTQ_PHRED_64') +file_type_FASTQ_PHRED_64.setDescription('FastQ Format with PHRED+64 quality values (as deliverd by Illumina GA Pipeline >= 1.3)') + +print "Imported 7 File Formats" +vocabulary_AGILENT_KIT = tr.getOrCreateNewVocabulary('AGILENT_KIT') +vocabulary_AGILENT_KIT.setDescription(None) +vocabulary_AGILENT_KIT.setUrlTemplate(None) +vocabulary_AGILENT_KIT.setManagedInternally(False) +vocabulary_AGILENT_KIT.setInternalNamespace(False) +vocabulary_AGILENT_KIT.setChosenFromList(True) + +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000 = tr.createNewVocabularyTerm('AGILENT_DNA_KIT_1000') +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setDescription(None) +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setLabel(None) +vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setOrdinal(1) +vocabulary_AGILENT_KIT.addTerm(vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000) + +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT = tr.createNewVocabularyTerm('AGILENT_HIGH_SENSITIVITY_DNA_KIT') +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setDescription(None) +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setLabel(None) +vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setOrdinal(2) +vocabulary_AGILENT_KIT.addTerm(vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT) + +vocabulary_ALIGNMENT_SOFTWARE = tr.getOrCreateNewVocabulary('ALIGNMENT_SOFTWARE') +vocabulary_ALIGNMENT_SOFTWARE.setDescription('If an alignment is requested, which software package should be use?') +vocabulary_ALIGNMENT_SOFTWARE.setUrlTemplate(None) +vocabulary_ALIGNMENT_SOFTWARE.setManagedInternally(False) +vocabulary_ALIGNMENT_SOFTWARE.setInternalNamespace(False) +vocabulary_ALIGNMENT_SOFTWARE.setChosenFromList(True) + +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED = tr.createNewVocabularyTerm('NOT_NEEDED') +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setOrdinal(1) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED) + +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND = tr.createNewVocabularyTerm('ELAND') +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setOrdinal(2) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_ELAND) + +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ = tr.createNewVocabularyTerm('MAQ') +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setOrdinal(3) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_MAQ) + +vocabulary_term_ALIGNMENT_SOFTWARE_BWA = tr.createNewVocabularyTerm('BWA') +vocabulary_term_ALIGNMENT_SOFTWARE_BWA.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BWA.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BWA.setOrdinal(4) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_BWA) + +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN = tr.createNewVocabularyTerm('NOVOALIGN') +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setOrdinal(6) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN) + +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE = tr.createNewVocabularyTerm('BOWTIE') +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setDescription(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setLabel(None) +vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setOrdinal(7) +vocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE) + +vocabulary_CASAVA_VERSION = tr.getOrCreateNewVocabulary('CASAVA_VERSION') +vocabulary_CASAVA_VERSION.setDescription('Post analyzing software') +vocabulary_CASAVA_VERSION.setUrlTemplate(None) +vocabulary_CASAVA_VERSION.setManagedInternally(False) +vocabulary_CASAVA_VERSION.setInternalNamespace(False) +vocabulary_CASAVA_VERSION.setChosenFromList(True) + +vocabulary_term_CASAVA_VERSION_18 = tr.createNewVocabularyTerm('1.8') +vocabulary_term_CASAVA_VERSION_18.setDescription(None) +vocabulary_term_CASAVA_VERSION_18.setLabel(None) +vocabulary_term_CASAVA_VERSION_18.setOrdinal(1) +vocabulary_CASAVA_VERSION.addTerm(vocabulary_term_CASAVA_VERSION_18) + +vocabulary_term_CASAVA_VERSION_17 = tr.createNewVocabularyTerm('1.7') +vocabulary_term_CASAVA_VERSION_17.setDescription(None) +vocabulary_term_CASAVA_VERSION_17.setLabel(None) +vocabulary_term_CASAVA_VERSION_17.setOrdinal(2) +vocabulary_CASAVA_VERSION.addTerm(vocabulary_term_CASAVA_VERSION_17) + +vocabulary_CLUSTER_GENERATION_KIT_VERSION = tr.getOrCreateNewVocabulary('CLUSTER_GENERATION_KIT_VERSION') +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setDescription('Version of the Cluster Generation Kit') +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setUrlTemplate(None) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setManagedInternally(False) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setInternalNamespace(False) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.setChosenFromList(True) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_HS_V3') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setLabel('TruSeq cBot-HS v3') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setOrdinal(1) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_HS_V2.5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setLabel('TruSeq cBot-HS v2.5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setOrdinal(2) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_GA_V2') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setLabel('TrueSeq cBot-GA v2') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setOrdinal(3) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5 = tr.createNewVocabularyTerm('TRUSEQ_CS_GA_V5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setLabel('TrueSeq CS-GA v5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setOrdinal(4) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5 = tr.createNewVocabularyTerm('V5') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setLabel(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setOrdinal(5) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4 = tr.createNewVocabularyTerm('V4') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setLabel(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setOrdinal(6) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4) + +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2 = tr.createNewVocabularyTerm('V2') +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setDescription(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setLabel(None) +vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setOrdinal(7) +vocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2) + +vocabulary_CLUSTER_STATION = tr.getOrCreateNewVocabulary('CLUSTER_STATION') +vocabulary_CLUSTER_STATION.setDescription('Cluster Station') +vocabulary_CLUSTER_STATION.setUrlTemplate(None) +vocabulary_CLUSTER_STATION.setManagedInternally(False) +vocabulary_CLUSTER_STATION.setInternalNamespace(False) +vocabulary_CLUSTER_STATION.setChosenFromList(True) + +vocabulary_term_CLUSTER_STATION_CBOT = tr.createNewVocabularyTerm('CBOT') +vocabulary_term_CLUSTER_STATION_CBOT.setDescription(None) +vocabulary_term_CLUSTER_STATION_CBOT.setLabel('cBot') +vocabulary_term_CLUSTER_STATION_CBOT.setOrdinal(1) +vocabulary_CLUSTER_STATION.addTerm(vocabulary_term_CLUSTER_STATION_CBOT) + +vocabulary_term_CLUSTER_STATION_CBOT2 = tr.createNewVocabularyTerm('CBOT2') +vocabulary_term_CLUSTER_STATION_CBOT2.setDescription('Second cBot') +vocabulary_term_CLUSTER_STATION_CBOT2.setLabel('cBot2') +vocabulary_term_CLUSTER_STATION_CBOT2.setOrdinal(2) +vocabulary_CLUSTER_STATION.addTerm(vocabulary_term_CLUSTER_STATION_CBOT2) + +vocabulary_CONTROL_LANE = tr.getOrCreateNewVocabulary('CONTROL_LANE') +vocabulary_CONTROL_LANE.setDescription(None) +vocabulary_CONTROL_LANE.setUrlTemplate(None) +vocabulary_CONTROL_LANE.setManagedInternally(False) +vocabulary_CONTROL_LANE.setInternalNamespace(False) +vocabulary_CONTROL_LANE.setChosenFromList(True) + +vocabulary_term_CONTROL_LANE_1 = tr.createNewVocabularyTerm('1') +vocabulary_term_CONTROL_LANE_1.setDescription(None) +vocabulary_term_CONTROL_LANE_1.setLabel(None) +vocabulary_term_CONTROL_LANE_1.setOrdinal(1) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_1) + +vocabulary_term_CONTROL_LANE_2 = tr.createNewVocabularyTerm('2') +vocabulary_term_CONTROL_LANE_2.setDescription(None) +vocabulary_term_CONTROL_LANE_2.setLabel(None) +vocabulary_term_CONTROL_LANE_2.setOrdinal(2) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_2) + +vocabulary_term_CONTROL_LANE_3 = tr.createNewVocabularyTerm('3') +vocabulary_term_CONTROL_LANE_3.setDescription(None) +vocabulary_term_CONTROL_LANE_3.setLabel(None) +vocabulary_term_CONTROL_LANE_3.setOrdinal(3) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_3) + +vocabulary_term_CONTROL_LANE_4 = tr.createNewVocabularyTerm('4') +vocabulary_term_CONTROL_LANE_4.setDescription(None) +vocabulary_term_CONTROL_LANE_4.setLabel(None) +vocabulary_term_CONTROL_LANE_4.setOrdinal(4) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_4) + +vocabulary_term_CONTROL_LANE_5 = tr.createNewVocabularyTerm('5') +vocabulary_term_CONTROL_LANE_5.setDescription(None) +vocabulary_term_CONTROL_LANE_5.setLabel(None) +vocabulary_term_CONTROL_LANE_5.setOrdinal(5) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_5) + +vocabulary_term_CONTROL_LANE_6 = tr.createNewVocabularyTerm('6') +vocabulary_term_CONTROL_LANE_6.setDescription(None) +vocabulary_term_CONTROL_LANE_6.setLabel(None) +vocabulary_term_CONTROL_LANE_6.setOrdinal(6) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_6) + +vocabulary_term_CONTROL_LANE_7 = tr.createNewVocabularyTerm('7') +vocabulary_term_CONTROL_LANE_7.setDescription(None) +vocabulary_term_CONTROL_LANE_7.setLabel(None) +vocabulary_term_CONTROL_LANE_7.setOrdinal(7) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_7) + +vocabulary_term_CONTROL_LANE_8 = tr.createNewVocabularyTerm('8') +vocabulary_term_CONTROL_LANE_8.setDescription(None) +vocabulary_term_CONTROL_LANE_8.setLabel(None) +vocabulary_term_CONTROL_LANE_8.setOrdinal(8) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_8) + +vocabulary_term_CONTROL_LANE_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_CONTROL_LANE_NONE.setDescription(None) +vocabulary_term_CONTROL_LANE_NONE.setLabel(None) +vocabulary_term_CONTROL_LANE_NONE.setOrdinal(9) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_NONE) + +vocabulary_term_CONTROL_LANE_0 = tr.createNewVocabularyTerm('0') +vocabulary_term_CONTROL_LANE_0.setDescription(None) +vocabulary_term_CONTROL_LANE_0.setLabel(None) +vocabulary_term_CONTROL_LANE_0.setOrdinal(10) +vocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_0) + +vocabulary_END_TYPE = tr.getOrCreateNewVocabulary('END_TYPE') +vocabulary_END_TYPE.setDescription('Sequencing method') +vocabulary_END_TYPE.setUrlTemplate(None) +vocabulary_END_TYPE.setManagedInternally(False) +vocabulary_END_TYPE.setInternalNamespace(False) +vocabulary_END_TYPE.setChosenFromList(True) + +vocabulary_term_END_TYPE_SINGLE_READ = tr.createNewVocabularyTerm('SINGLE_READ') +vocabulary_term_END_TYPE_SINGLE_READ.setDescription(None) +vocabulary_term_END_TYPE_SINGLE_READ.setLabel(None) +vocabulary_term_END_TYPE_SINGLE_READ.setOrdinal(1) +vocabulary_END_TYPE.addTerm(vocabulary_term_END_TYPE_SINGLE_READ) + +vocabulary_term_END_TYPE_PAIRED_END = tr.createNewVocabularyTerm('PAIRED_END') +vocabulary_term_END_TYPE_PAIRED_END.setDescription(None) +vocabulary_term_END_TYPE_PAIRED_END.setLabel(None) +vocabulary_term_END_TYPE_PAIRED_END.setOrdinal(2) +vocabulary_END_TYPE.addTerm(vocabulary_term_END_TYPE_PAIRED_END) + +vocabulary_EXPERIMENT_DESIGN = tr.getOrCreateNewVocabulary('EXPERIMENT_DESIGN') +vocabulary_EXPERIMENT_DESIGN.setDescription('General Intent') +vocabulary_EXPERIMENT_DESIGN.setUrlTemplate(None) +vocabulary_EXPERIMENT_DESIGN.setManagedInternally(False) +vocabulary_EXPERIMENT_DESIGN.setInternalNamespace(False) +vocabulary_EXPERIMENT_DESIGN.setChosenFromList(True) + +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION = tr.createNewVocabularyTerm('BINDING_SITE_IDENTIFICATION') +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setLabel('Binding Site Identification') +vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setOrdinal(1) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION) + +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS = tr.createNewVocabularyTerm('CHROMATIN_MARKS') +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setLabel('Chromatin Marks') +vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setOrdinal(2) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS) + +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION = tr.createNewVocabularyTerm('COMPARATIVE_GENOMIC_HYBRIDIZATION') +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setLabel('Comparative Genomic Hybridization') +vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setOrdinal(3) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION) + +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION = tr.createNewVocabularyTerm('DIFFERENTIAL_EXPRESSION') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setLabel('Differential Expression') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setOrdinal(4) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION) + +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING = tr.createNewVocabularyTerm('DIFFERENTIAL_SPLICING') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setLabel('Differential Splicing') +vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setOrdinal(5) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING) + +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION = tr.createNewVocabularyTerm('EXPRESSION') +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setLabel('Expression') +vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setOrdinal(6) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION) + +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT = tr.createNewVocabularyTerm('SEQUENCE_ENRICHMENT') +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setLabel('Sequence Enrichment') +vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setOrdinal(7) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT) + +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION = tr.createNewVocabularyTerm('TRANSCRIPT_IDENTIFICATION') +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setLabel('Transcript Identification') +vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setOrdinal(8) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION) + +vocabulary_term_EXPERIMENT_DESIGN_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_EXPERIMENT_DESIGN_OTHER.setDescription(None) +vocabulary_term_EXPERIMENT_DESIGN_OTHER.setLabel('Other') +vocabulary_term_EXPERIMENT_DESIGN_OTHER.setOrdinal(9) +vocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_OTHER) + +vocabulary_INDEX1 = tr.getOrCreateNewVocabulary('INDEX1') +vocabulary_INDEX1.setDescription('Index 1 for Illumina Indexing') +vocabulary_INDEX1.setUrlTemplate(None) +vocabulary_INDEX1.setManagedInternally(False) +vocabulary_INDEX1.setInternalNamespace(False) +vocabulary_INDEX1.setChosenFromList(True) + +vocabulary_term_INDEX1_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_INDEX1_NONE.setDescription('No Index') +vocabulary_term_INDEX1_NONE.setLabel(' None') +vocabulary_term_INDEX1_NONE.setOrdinal(1) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_NONE) + +vocabulary_term_INDEX1_ATCACGA = tr.createNewVocabularyTerm('ATCACGA') +vocabulary_term_INDEX1_ATCACGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ATCACGA.setLabel('Index1 ATCACGA') +vocabulary_term_INDEX1_ATCACGA.setOrdinal(2) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATCACGA) + +vocabulary_term_INDEX1_CGATGTA = tr.createNewVocabularyTerm('CGATGTA') +vocabulary_term_INDEX1_CGATGTA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CGATGTA.setLabel('Index2 CGATGTA') +vocabulary_term_INDEX1_CGATGTA.setOrdinal(3) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGATGTA) + +vocabulary_term_INDEX1_TTAGGCA = tr.createNewVocabularyTerm('TTAGGCA') +vocabulary_term_INDEX1_TTAGGCA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_TTAGGCA.setLabel('Index3 TTAGGCA') +vocabulary_term_INDEX1_TTAGGCA.setOrdinal(4) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTAGGCA) + +vocabulary_term_INDEX1_TGACCAA = tr.createNewVocabularyTerm('TGACCAA') +vocabulary_term_INDEX1_TGACCAA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_TGACCAA.setLabel('Index4 TGACCAA') +vocabulary_term_INDEX1_TGACCAA.setOrdinal(5) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TGACCAA) + +vocabulary_term_INDEX1_ACAGTGA = tr.createNewVocabularyTerm('ACAGTGA') +vocabulary_term_INDEX1_ACAGTGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ACAGTGA.setLabel('Index5 ACAGTGA') +vocabulary_term_INDEX1_ACAGTGA.setOrdinal(6) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACAGTGA) + +vocabulary_term_INDEX1_GCCAATA = tr.createNewVocabularyTerm('GCCAATA') +vocabulary_term_INDEX1_GCCAATA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GCCAATA.setLabel('Index6 GCCAATA') +vocabulary_term_INDEX1_GCCAATA.setOrdinal(7) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCCAATA) + +vocabulary_term_INDEX1_CAGATCA = tr.createNewVocabularyTerm('CAGATCA') +vocabulary_term_INDEX1_CAGATCA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CAGATCA.setLabel('Index7 CAGATCA') +vocabulary_term_INDEX1_CAGATCA.setOrdinal(8) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGATCA) + +vocabulary_term_INDEX1_ACTTGAA = tr.createNewVocabularyTerm('ACTTGAA') +vocabulary_term_INDEX1_ACTTGAA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ACTTGAA.setLabel('Index8 ACTTGAA') +vocabulary_term_INDEX1_ACTTGAA.setOrdinal(9) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTTGAA) + +vocabulary_term_INDEX1_GATCAGA = tr.createNewVocabularyTerm('GATCAGA') +vocabulary_term_INDEX1_GATCAGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GATCAGA.setLabel('Index9 GATCAGA') +vocabulary_term_INDEX1_GATCAGA.setOrdinal(10) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GATCAGA) + +vocabulary_term_INDEX1_TAGCTTA = tr.createNewVocabularyTerm('TAGCTTA') +vocabulary_term_INDEX1_TAGCTTA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_TAGCTTA.setLabel('Index10 TAGCTTA') +vocabulary_term_INDEX1_TAGCTTA.setOrdinal(11) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAGCTTA) + +vocabulary_term_INDEX1_GGCTACA = tr.createNewVocabularyTerm('GGCTACA') +vocabulary_term_INDEX1_GGCTACA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GGCTACA.setLabel('Index11 GGCTACA') +vocabulary_term_INDEX1_GGCTACA.setOrdinal(12) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGCTACA) + +vocabulary_term_INDEX1_CTTGTAA = tr.createNewVocabularyTerm('CTTGTAA') +vocabulary_term_INDEX1_CTTGTAA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CTTGTAA.setLabel('Index12 CTTGTAA') +vocabulary_term_INDEX1_CTTGTAA.setOrdinal(13) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTTGTAA) + +vocabulary_term_INDEX1_AGATACA = tr.createNewVocabularyTerm('AGATACA') +vocabulary_term_INDEX1_AGATACA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_AGATACA.setLabel('Index13 AGATAC') +vocabulary_term_INDEX1_AGATACA.setOrdinal(14) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGATACA) + +vocabulary_term_INDEX1_AGTTCCG = tr.createNewVocabularyTerm('AGTTCCG') +vocabulary_term_INDEX1_AGTTCCG.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_AGTTCCG.setLabel('Index14 AGTTCCG') +vocabulary_term_INDEX1_AGTTCCG.setOrdinal(15) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGTTCCG) + +vocabulary_term_INDEX1_ATGTCAG = tr.createNewVocabularyTerm('ATGTCAG') +vocabulary_term_INDEX1_ATGTCAG.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ATGTCAG.setLabel('Index15 ATGTCAG') +vocabulary_term_INDEX1_ATGTCAG.setOrdinal(16) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGTCAG) + +vocabulary_term_INDEX1_CCGTCCC = tr.createNewVocabularyTerm('CCGTCCC') +vocabulary_term_INDEX1_CCGTCCC.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CCGTCCC.setLabel('Index16 CCGTCCC') +vocabulary_term_INDEX1_CCGTCCC.setOrdinal(17) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGTCCC) + +vocabulary_term_INDEX1_GTCCGCA = tr.createNewVocabularyTerm('GTCCGCA') +vocabulary_term_INDEX1_GTCCGCA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTCCGCA.setLabel('Index18 GTCCGCA') +vocabulary_term_INDEX1_GTCCGCA.setOrdinal(18) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTCCGCA) + +vocabulary_term_INDEX1_GTGAAAC = tr.createNewVocabularyTerm('GTGAAAC') +vocabulary_term_INDEX1_GTGAAAC.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTGAAAC.setLabel('Index19 GTGAAAC') +vocabulary_term_INDEX1_GTGAAAC.setOrdinal(19) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGAAAC) + +vocabulary_term_INDEX1_GTGGCCT = tr.createNewVocabularyTerm('GTGGCCT') +vocabulary_term_INDEX1_GTGGCCT.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTGGCCT.setLabel('Index20 GTGGCCT') +vocabulary_term_INDEX1_GTGGCCT.setOrdinal(20) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGGCCT) + +vocabulary_term_INDEX1_GTTTCGG = tr.createNewVocabularyTerm('GTTTCGG') +vocabulary_term_INDEX1_GTTTCGG.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GTTTCGG.setLabel('Index21 GTTTCGG') +vocabulary_term_INDEX1_GTTTCGG.setOrdinal(21) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTTTCGG) + +vocabulary_term_INDEX1_CGTACGT = tr.createNewVocabularyTerm('CGTACGT') +vocabulary_term_INDEX1_CGTACGT.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_CGTACGT.setLabel('Index22 CGTACGT') +vocabulary_term_INDEX1_CGTACGT.setOrdinal(22) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACGT) + +vocabulary_term_INDEX1_GAGTGGA = tr.createNewVocabularyTerm('GAGTGGA') +vocabulary_term_INDEX1_GAGTGGA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_GAGTGGA.setLabel('Index23 GAGTGGA') +vocabulary_term_INDEX1_GAGTGGA.setOrdinal(23) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GAGTGGA) + +vocabulary_term_INDEX1_ACTGATA = tr.createNewVocabularyTerm('ACTGATA') +vocabulary_term_INDEX1_ACTGATA.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ACTGATA.setLabel('Index25 ACTGATA') +vocabulary_term_INDEX1_ACTGATA.setOrdinal(24) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTGATA) + +vocabulary_term_INDEX1_ATTCCTT = tr.createNewVocabularyTerm('ATTCCTT') +vocabulary_term_INDEX1_ATTCCTT.setDescription('Illumina, Nextera or Scriptseq') +vocabulary_term_INDEX1_ATTCCTT.setLabel('Index27 ATTCCTT') +vocabulary_term_INDEX1_ATTCCTT.setOrdinal(25) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATTCCTT) + +vocabulary_term_INDEX1_TAAGGCGA = tr.createNewVocabularyTerm('TAAGGCGA') +vocabulary_term_INDEX1_TAAGGCGA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_TAAGGCGA.setLabel('Index1 (i7) N701 TAAGGCGA') +vocabulary_term_INDEX1_TAAGGCGA.setOrdinal(26) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAAGGCGA) + +vocabulary_term_INDEX1_CGTACTAG = tr.createNewVocabularyTerm('CGTACTAG') +vocabulary_term_INDEX1_CGTACTAG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CGTACTAG.setLabel('Index1 (i7) N702 CGTACTAG') +vocabulary_term_INDEX1_CGTACTAG.setOrdinal(27) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACTAG) + +vocabulary_term_INDEX1_AGGCAGAA = tr.createNewVocabularyTerm('AGGCAGAA') +vocabulary_term_INDEX1_AGGCAGAA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_AGGCAGAA.setLabel('Index1 (i7) N703 AGGCAGAA') +vocabulary_term_INDEX1_AGGCAGAA.setOrdinal(28) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGGCAGAA) + +vocabulary_term_INDEX1_TCCTGAGC = tr.createNewVocabularyTerm('TCCTGAGC') +vocabulary_term_INDEX1_TCCTGAGC.setDescription('Nextera DNA') +vocabulary_term_INDEX1_TCCTGAGC.setLabel('Index1 (i7) N704 TCCTGAGC') +vocabulary_term_INDEX1_TCCTGAGC.setOrdinal(29) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCTGAGC) + +vocabulary_term_INDEX1_GGACTCCT = tr.createNewVocabularyTerm('GGACTCCT') +vocabulary_term_INDEX1_GGACTCCT.setDescription('Nextera DNA') +vocabulary_term_INDEX1_GGACTCCT.setLabel('Index1 (i7) N705 GGACTCCT') +vocabulary_term_INDEX1_GGACTCCT.setOrdinal(30) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGACTCCT) + +vocabulary_term_INDEX1_TAGGCATG = tr.createNewVocabularyTerm('TAGGCATG') +vocabulary_term_INDEX1_TAGGCATG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_TAGGCATG.setLabel('Index1 (i7) N706 TAGGCATG') +vocabulary_term_INDEX1_TAGGCATG.setOrdinal(31) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAGGCATG) + +vocabulary_term_INDEX1_CTCTCTAC = tr.createNewVocabularyTerm('CTCTCTAC') +vocabulary_term_INDEX1_CTCTCTAC.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CTCTCTAC.setLabel('Index1 (i7) N707 CTCTCTAC') +vocabulary_term_INDEX1_CTCTCTAC.setOrdinal(32) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTCTCTAC) + +vocabulary_term_INDEX1_CAGAGAGG = tr.createNewVocabularyTerm('CAGAGAGG') +vocabulary_term_INDEX1_CAGAGAGG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CAGAGAGG.setLabel('Index1 (i7) N708 CAGAGAGG') +vocabulary_term_INDEX1_CAGAGAGG.setOrdinal(33) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGAGAGG) + +vocabulary_term_INDEX1_GCTACGCT = tr.createNewVocabularyTerm('GCTACGCT') +vocabulary_term_INDEX1_GCTACGCT.setDescription('Nextera DNA') +vocabulary_term_INDEX1_GCTACGCT.setLabel('Index1 (i7) N709 GCTACGCT') +vocabulary_term_INDEX1_GCTACGCT.setOrdinal(34) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCTACGCT) + +vocabulary_term_INDEX1_CGAGGCTG = tr.createNewVocabularyTerm('CGAGGCTG') +vocabulary_term_INDEX1_CGAGGCTG.setDescription('Nextera DNA') +vocabulary_term_INDEX1_CGAGGCTG.setLabel('Index1 (i7) N710 CGAGGCTG') +vocabulary_term_INDEX1_CGAGGCTG.setOrdinal(35) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGAGGCTG) + +vocabulary_term_INDEX1_AAGAGGCA = tr.createNewVocabularyTerm('AAGAGGCA') +vocabulary_term_INDEX1_AAGAGGCA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_AAGAGGCA.setLabel('Index1 (i7) N711 AAGAGGCA') +vocabulary_term_INDEX1_AAGAGGCA.setOrdinal(36) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AAGAGGCA) + +vocabulary_term_INDEX1_GTAGAGGA = tr.createNewVocabularyTerm('GTAGAGGA') +vocabulary_term_INDEX1_GTAGAGGA.setDescription('Nextera DNA') +vocabulary_term_INDEX1_GTAGAGGA.setLabel('Index1 (i7) N712 GTAGAGGA') +vocabulary_term_INDEX1_GTAGAGGA.setOrdinal(37) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTAGAGGA) + +vocabulary_term_INDEX1_AAGACTA = tr.createNewVocabularyTerm('AAGACTA') +vocabulary_term_INDEX1_AAGACTA.setDescription(None) +vocabulary_term_INDEX1_AAGACTA.setLabel('02 AAGACT') +vocabulary_term_INDEX1_AAGACTA.setOrdinal(38) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AAGACTA) + +vocabulary_term_INDEX1_ACTTCAA = tr.createNewVocabularyTerm('ACTTCAA') +vocabulary_term_INDEX1_ACTTCAA.setDescription(None) +vocabulary_term_INDEX1_ACTTCAA.setLabel('10 ACTTCA') +vocabulary_term_INDEX1_ACTTCAA.setOrdinal(39) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTTCAA) + +vocabulary_term_INDEX1_AGGTTGA = tr.createNewVocabularyTerm('AGGTTGA') +vocabulary_term_INDEX1_AGGTTGA.setDescription(None) +vocabulary_term_INDEX1_AGGTTGA.setLabel('17 AGGTTG') +vocabulary_term_INDEX1_AGGTTGA.setOrdinal(40) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGGTTGA) + +vocabulary_term_INDEX1_TTCGTCA = tr.createNewVocabularyTerm('TTCGTCA') +vocabulary_term_INDEX1_TTCGTCA.setDescription(None) +vocabulary_term_INDEX1_TTCGTCA.setLabel('17 TTCGTCA') +vocabulary_term_INDEX1_TTCGTCA.setOrdinal(41) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTCGTCA) + +vocabulary_term_INDEX1_AGCATAA = tr.createNewVocabularyTerm('AGCATAA') +vocabulary_term_INDEX1_AGCATAA.setDescription(None) +vocabulary_term_INDEX1_AGCATAA.setLabel('20 AGCATAA') +vocabulary_term_INDEX1_AGCATAA.setOrdinal(42) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGCATAA) + +vocabulary_term_INDEX1_ATACGCA = tr.createNewVocabularyTerm('ATACGCA') +vocabulary_term_INDEX1_ATACGCA.setDescription(None) +vocabulary_term_INDEX1_ATACGCA.setLabel('20 ATACGC') +vocabulary_term_INDEX1_ATACGCA.setOrdinal(43) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATACGCA) + +vocabulary_term_INDEX1_CAGATGA = tr.createNewVocabularyTerm('CAGATGA') +vocabulary_term_INDEX1_CAGATGA.setDescription(None) +vocabulary_term_INDEX1_CAGATGA.setLabel('28 CAGATG') +vocabulary_term_INDEX1_CAGATGA.setOrdinal(44) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGATGA) + +vocabulary_term_INDEX1_CCGAATA = tr.createNewVocabularyTerm('CCGAATA') +vocabulary_term_INDEX1_CCGAATA.setDescription(None) +vocabulary_term_INDEX1_CCGAATA.setLabel('34 CCGAAT') +vocabulary_term_INDEX1_CCGAATA.setOrdinal(45) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGAATA) + +vocabulary_term_INDEX1_CGCTCGA = tr.createNewVocabularyTerm('CGCTCGA') +vocabulary_term_INDEX1_CGCTCGA.setDescription(None) +vocabulary_term_INDEX1_CGCTCGA.setLabel('43 CGCTCG') +vocabulary_term_INDEX1_CGCTCGA.setOrdinal(46) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGCTCGA) + +vocabulary_term_INDEX1_CGTATTA = tr.createNewVocabularyTerm('CGTATTA') +vocabulary_term_INDEX1_CGTATTA.setDescription(None) +vocabulary_term_INDEX1_CGTATTA.setLabel('45 CGTATT') +vocabulary_term_INDEX1_CGTATTA.setOrdinal(47) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTATTA) + +vocabulary_term_INDEX1_CCATGAA = tr.createNewVocabularyTerm('CCATGAA') +vocabulary_term_INDEX1_CCATGAA.setDescription(None) +vocabulary_term_INDEX1_CCATGAA.setLabel('50 CCATGAA') +vocabulary_term_INDEX1_CCATGAA.setOrdinal(48) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCATGAA) + +vocabulary_term_INDEX1_CTGACCA = tr.createNewVocabularyTerm('CTGACCA') +vocabulary_term_INDEX1_CTGACCA.setDescription(None) +vocabulary_term_INDEX1_CTGACCA.setLabel('50 CTGACC') +vocabulary_term_INDEX1_CTGACCA.setOrdinal(49) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTGACCA) + +vocabulary_term_INDEX1_GAAGCCA = tr.createNewVocabularyTerm('GAAGCCA') +vocabulary_term_INDEX1_GAAGCCA.setDescription(None) +vocabulary_term_INDEX1_GAAGCCA.setLabel('52 GAAGCC') +vocabulary_term_INDEX1_GAAGCCA.setOrdinal(50) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GAAGCCA) + +vocabulary_term_INDEX1_NOINDEX = tr.createNewVocabularyTerm('NOINDEX') +vocabulary_term_INDEX1_NOINDEX.setDescription(None) +vocabulary_term_INDEX1_NOINDEX.setLabel(None) +vocabulary_term_INDEX1_NOINDEX.setOrdinal(51) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_NOINDEX) + +vocabulary_term_INDEX1_GCTGAAA = tr.createNewVocabularyTerm('GCTGAAA') +vocabulary_term_INDEX1_GCTGAAA.setDescription(None) +vocabulary_term_INDEX1_GCTGAAA.setLabel('59 GCTGAA') +vocabulary_term_INDEX1_GCTGAAA.setOrdinal(52) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCTGAAA) + +vocabulary_term_INDEX1_GTCGCGA = tr.createNewVocabularyTerm('GTCGCGA') +vocabulary_term_INDEX1_GTCGCGA.setDescription(None) +vocabulary_term_INDEX1_GTCGCGA.setLabel('64 GTCGCG') +vocabulary_term_INDEX1_GTCGCGA.setOrdinal(53) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTCGCGA) + +vocabulary_term_INDEX1_TAAGATA = tr.createNewVocabularyTerm('TAAGATA') +vocabulary_term_INDEX1_TAAGATA.setDescription(None) +vocabulary_term_INDEX1_TAAGATA.setLabel('65 TAAGAT') +vocabulary_term_INDEX1_TAAGATA.setOrdinal(54) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAAGATA) + +vocabulary_term_INDEX1_GCGCTGA = tr.createNewVocabularyTerm('GCGCTGA') +vocabulary_term_INDEX1_GCGCTGA.setDescription(None) +vocabulary_term_INDEX1_GCGCTGA.setLabel('66 GCGCTGA') +vocabulary_term_INDEX1_GCGCTGA.setOrdinal(55) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCGCTGA) + +vocabulary_term_INDEX1_TATCGTA = tr.createNewVocabularyTerm('TATCGTA') +vocabulary_term_INDEX1_TATCGTA.setDescription(None) +vocabulary_term_INDEX1_TATCGTA.setLabel('66 TATCGT') +vocabulary_term_INDEX1_TATCGTA.setOrdinal(56) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TATCGTA) + +vocabulary_term_INDEX1_TCCTACA = tr.createNewVocabularyTerm('TCCTACA') +vocabulary_term_INDEX1_TCCTACA.setDescription(None) +vocabulary_term_INDEX1_TCCTACA.setLabel('68 TCCTAC') +vocabulary_term_INDEX1_TCCTACA.setOrdinal(57) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCTACA) + +vocabulary_term_INDEX1_TCTATAA = tr.createNewVocabularyTerm('TCTATAA') +vocabulary_term_INDEX1_TCTATAA.setDescription(None) +vocabulary_term_INDEX1_TCTATAA.setLabel('70 TCTATA') +vocabulary_term_INDEX1_TCTATAA.setOrdinal(58) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCTATAA) + +vocabulary_term_INDEX1_TTACTTA = tr.createNewVocabularyTerm('TTACTTA') +vocabulary_term_INDEX1_TTACTTA.setDescription(None) +vocabulary_term_INDEX1_TTACTTA.setLabel('74 TTACTT') +vocabulary_term_INDEX1_TTACTTA.setOrdinal(59) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTACTTA) + +vocabulary_term_INDEX1_TTCCGAA = tr.createNewVocabularyTerm('TTCCGAA') +vocabulary_term_INDEX1_TTCCGAA.setDescription(None) +vocabulary_term_INDEX1_TTCCGAA.setLabel('75 TTCCGA') +vocabulary_term_INDEX1_TTCCGAA.setOrdinal(60) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTCCGAA) + +vocabulary_term_INDEX1_ATGTCAA = tr.createNewVocabularyTerm('ATGTCAA') +vocabulary_term_INDEX1_ATGTCAA.setDescription(None) +vocabulary_term_INDEX1_ATGTCAA.setLabel('DNA Adapter 15') +vocabulary_term_INDEX1_ATGTCAA.setOrdinal(61) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGTCAA) + +vocabulary_term_INDEX1_CCGTCCA = tr.createNewVocabularyTerm('CCGTCCA') +vocabulary_term_INDEX1_CCGTCCA.setDescription(None) +vocabulary_term_INDEX1_CCGTCCA.setLabel('DNA Adapter 16') +vocabulary_term_INDEX1_CCGTCCA.setOrdinal(62) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGTCCA) + +vocabulary_term_INDEX1_GTAGAGA = tr.createNewVocabularyTerm('GTAGAGA') +vocabulary_term_INDEX1_GTAGAGA.setDescription(None) +vocabulary_term_INDEX1_GTAGAGA.setLabel('DNA Adapter 17') +vocabulary_term_INDEX1_GTAGAGA.setOrdinal(63) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTAGAGA) + +vocabulary_term_INDEX1_GTGAAAA = tr.createNewVocabularyTerm('GTGAAAA') +vocabulary_term_INDEX1_GTGAAAA.setDescription(None) +vocabulary_term_INDEX1_GTGAAAA.setLabel('DNA Adapter 19') +vocabulary_term_INDEX1_GTGAAAA.setOrdinal(64) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGAAAA) + +vocabulary_term_INDEX1_GTGGCCA = tr.createNewVocabularyTerm('GTGGCCA') +vocabulary_term_INDEX1_GTGGCCA.setDescription(None) +vocabulary_term_INDEX1_GTGGCCA.setLabel('DNA Adapter 20') +vocabulary_term_INDEX1_GTGGCCA.setOrdinal(65) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGGCCA) + +vocabulary_term_INDEX1_GTTTCGA = tr.createNewVocabularyTerm('GTTTCGA') +vocabulary_term_INDEX1_GTTTCGA.setDescription(None) +vocabulary_term_INDEX1_GTTTCGA.setLabel('DNA Adapter 21') +vocabulary_term_INDEX1_GTTTCGA.setOrdinal(66) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTTTCGA) + +vocabulary_term_INDEX1_CGTACGA = tr.createNewVocabularyTerm('CGTACGA') +vocabulary_term_INDEX1_CGTACGA.setDescription(None) +vocabulary_term_INDEX1_CGTACGA.setLabel('DNA Adapter 22') +vocabulary_term_INDEX1_CGTACGA.setOrdinal(67) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACGA) + +vocabulary_term_INDEX1_GGTAGCA = tr.createNewVocabularyTerm('GGTAGCA') +vocabulary_term_INDEX1_GGTAGCA.setDescription(None) +vocabulary_term_INDEX1_GGTAGCA.setLabel('DNA Adapter 24') +vocabulary_term_INDEX1_GGTAGCA.setOrdinal(68) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGTAGCA) + +vocabulary_term_INDEX1_ATGAGCA = tr.createNewVocabularyTerm('ATGAGCA') +vocabulary_term_INDEX1_ATGAGCA.setDescription(None) +vocabulary_term_INDEX1_ATGAGCA.setLabel('DNA Adapter 26') +vocabulary_term_INDEX1_ATGAGCA.setOrdinal(69) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGAGCA) + +vocabulary_term_INDEX1_ATTCCTA = tr.createNewVocabularyTerm('ATTCCTA') +vocabulary_term_INDEX1_ATTCCTA.setDescription(None) +vocabulary_term_INDEX1_ATTCCTA.setLabel('DNA Adapter 27') +vocabulary_term_INDEX1_ATTCCTA.setOrdinal(70) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATTCCTA) + +vocabulary_term_INDEX1_CAAAAGA = tr.createNewVocabularyTerm('CAAAAGA') +vocabulary_term_INDEX1_CAAAAGA.setDescription(None) +vocabulary_term_INDEX1_CAAAAGA.setLabel('DNA Adapter 28') +vocabulary_term_INDEX1_CAAAAGA.setOrdinal(71) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAAAAGA) + +vocabulary_term_INDEX1_CAACTAA = tr.createNewVocabularyTerm('CAACTAA') +vocabulary_term_INDEX1_CAACTAA.setDescription(None) +vocabulary_term_INDEX1_CAACTAA.setLabel('DNA Adapter 29') +vocabulary_term_INDEX1_CAACTAA.setOrdinal(72) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAACTAA) + +vocabulary_term_INDEX1_CACCGGA = tr.createNewVocabularyTerm('CACCGGA') +vocabulary_term_INDEX1_CACCGGA.setDescription(None) +vocabulary_term_INDEX1_CACCGGA.setLabel('DNA Adapter 30') +vocabulary_term_INDEX1_CACCGGA.setOrdinal(73) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACCGGA) + +vocabulary_term_INDEX1_CACGATA = tr.createNewVocabularyTerm('CACGATA') +vocabulary_term_INDEX1_CACGATA.setDescription(None) +vocabulary_term_INDEX1_CACGATA.setLabel('DNA Adapter 31') +vocabulary_term_INDEX1_CACGATA.setOrdinal(74) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACGATA) + +vocabulary_term_INDEX1_CACTCAA = tr.createNewVocabularyTerm('CACTCAA') +vocabulary_term_INDEX1_CACTCAA.setDescription(None) +vocabulary_term_INDEX1_CACTCAA.setLabel('DNA Adapter 32') +vocabulary_term_INDEX1_CACTCAA.setOrdinal(75) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACTCAA) + +vocabulary_term_INDEX1_CAGGCGA = tr.createNewVocabularyTerm('CAGGCGA') +vocabulary_term_INDEX1_CAGGCGA.setDescription(None) +vocabulary_term_INDEX1_CAGGCGA.setLabel('DNA Adapter 33') +vocabulary_term_INDEX1_CAGGCGA.setOrdinal(76) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGGCGA) + +vocabulary_term_INDEX1_CATGGCA = tr.createNewVocabularyTerm('CATGGCA') +vocabulary_term_INDEX1_CATGGCA.setDescription(None) +vocabulary_term_INDEX1_CATGGCA.setLabel('DNA Adapter 34') +vocabulary_term_INDEX1_CATGGCA.setOrdinal(77) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CATGGCA) + +vocabulary_term_INDEX1_CATTTTA = tr.createNewVocabularyTerm('CATTTTA') +vocabulary_term_INDEX1_CATTTTA.setDescription(None) +vocabulary_term_INDEX1_CATTTTA.setLabel('DNA Adapter 35') +vocabulary_term_INDEX1_CATTTTA.setOrdinal(78) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CATTTTA) + +vocabulary_term_INDEX1_CCAACAA = tr.createNewVocabularyTerm('CCAACAA') +vocabulary_term_INDEX1_CCAACAA.setDescription(None) +vocabulary_term_INDEX1_CCAACAA.setLabel('DNA Adapter 36') +vocabulary_term_INDEX1_CCAACAA.setOrdinal(79) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCAACAA) + +vocabulary_term_INDEX1_CGGAATA = tr.createNewVocabularyTerm('CGGAATA') +vocabulary_term_INDEX1_CGGAATA.setDescription(None) +vocabulary_term_INDEX1_CGGAATA.setLabel('DNA Adapter 37') +vocabulary_term_INDEX1_CGGAATA.setOrdinal(80) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGGAATA) + +vocabulary_term_INDEX1_CTAGCTA = tr.createNewVocabularyTerm('CTAGCTA') +vocabulary_term_INDEX1_CTAGCTA.setDescription(None) +vocabulary_term_INDEX1_CTAGCTA.setLabel('DNA Adapter 38') +vocabulary_term_INDEX1_CTAGCTA.setOrdinal(81) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTAGCTA) + +vocabulary_term_INDEX1_CTATACA = tr.createNewVocabularyTerm('CTATACA') +vocabulary_term_INDEX1_CTATACA.setDescription(None) +vocabulary_term_INDEX1_CTATACA.setLabel('DNA Adapter 39') +vocabulary_term_INDEX1_CTATACA.setOrdinal(82) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTATACA) + +vocabulary_term_INDEX1_CTCAGAA = tr.createNewVocabularyTerm('CTCAGAA') +vocabulary_term_INDEX1_CTCAGAA.setDescription(None) +vocabulary_term_INDEX1_CTCAGAA.setLabel('DNA Adapter 40') +vocabulary_term_INDEX1_CTCAGAA.setOrdinal(83) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTCAGAA) + +vocabulary_term_INDEX1_GACGACA = tr.createNewVocabularyTerm('GACGACA') +vocabulary_term_INDEX1_GACGACA.setDescription(None) +vocabulary_term_INDEX1_GACGACA.setLabel('DNA Adapter 41') +vocabulary_term_INDEX1_GACGACA.setOrdinal(84) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GACGACA) + +vocabulary_term_INDEX1_TAATCGA = tr.createNewVocabularyTerm('TAATCGA') +vocabulary_term_INDEX1_TAATCGA.setDescription(None) +vocabulary_term_INDEX1_TAATCGA.setLabel('DNA Adapter 42') +vocabulary_term_INDEX1_TAATCGA.setOrdinal(85) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAATCGA) + +vocabulary_term_INDEX1_TACAGCA = tr.createNewVocabularyTerm('TACAGCA') +vocabulary_term_INDEX1_TACAGCA.setDescription(None) +vocabulary_term_INDEX1_TACAGCA.setLabel('DNA Adapter 43') +vocabulary_term_INDEX1_TACAGCA.setOrdinal(86) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TACAGCA) + +vocabulary_term_INDEX1_TATAATA = tr.createNewVocabularyTerm('TATAATA') +vocabulary_term_INDEX1_TATAATA.setDescription(None) +vocabulary_term_INDEX1_TATAATA.setLabel('DNA Adapter 44') +vocabulary_term_INDEX1_TATAATA.setOrdinal(87) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TATAATA) + +vocabulary_term_INDEX1_TCATTCA = tr.createNewVocabularyTerm('TCATTCA') +vocabulary_term_INDEX1_TCATTCA.setDescription(None) +vocabulary_term_INDEX1_TCATTCA.setLabel('DNA Adapter 45') +vocabulary_term_INDEX1_TCATTCA.setOrdinal(88) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCATTCA) + +vocabulary_term_INDEX1_TCCCGAA = tr.createNewVocabularyTerm('TCCCGAA') +vocabulary_term_INDEX1_TCCCGAA.setDescription(None) +vocabulary_term_INDEX1_TCCCGAA.setLabel('DNA Adapter 46') +vocabulary_term_INDEX1_TCCCGAA.setOrdinal(89) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCCGAA) + +vocabulary_term_INDEX1_TCGAAGA = tr.createNewVocabularyTerm('TCGAAGA') +vocabulary_term_INDEX1_TCGAAGA.setDescription(None) +vocabulary_term_INDEX1_TCGAAGA.setLabel('DNA Adapter 47') +vocabulary_term_INDEX1_TCGAAGA.setOrdinal(90) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCGAAGA) + +vocabulary_term_INDEX1_TCGGCAA = tr.createNewVocabularyTerm('TCGGCAA') +vocabulary_term_INDEX1_TCGGCAA.setDescription(None) +vocabulary_term_INDEX1_TCGGCAA.setLabel('DNA Adapter 48') +vocabulary_term_INDEX1_TCGGCAA.setOrdinal(91) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCGGCAA) + +vocabulary_term_INDEX1_AGTCAAC = tr.createNewVocabularyTerm('AGTCAAC') +vocabulary_term_INDEX1_AGTCAAC.setDescription(None) +vocabulary_term_INDEX1_AGTCAAC.setLabel('Index13 AGTCAAC') +vocabulary_term_INDEX1_AGTCAAC.setOrdinal(92) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGTCAAC) + +vocabulary_term_INDEX1_AATGCGA = tr.createNewVocabularyTerm('AATGCGA') +vocabulary_term_INDEX1_AATGCGA.setDescription(None) +vocabulary_term_INDEX1_AATGCGA.setLabel('Lib AATGCGA') +vocabulary_term_INDEX1_AATGCGA.setOrdinal(93) +vocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AATGCGA) + +vocabulary_INDEX2 = tr.getOrCreateNewVocabulary('INDEX2') +vocabulary_INDEX2.setDescription('Index 2 for Illumina Dual Indexing') +vocabulary_INDEX2.setUrlTemplate(None) +vocabulary_INDEX2.setManagedInternally(False) +vocabulary_INDEX2.setInternalNamespace(False) +vocabulary_INDEX2.setChosenFromList(True) + +vocabulary_term_INDEX2_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_INDEX2_NONE.setDescription('No Index') +vocabulary_term_INDEX2_NONE.setLabel('None') +vocabulary_term_INDEX2_NONE.setOrdinal(1) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_NONE) + +vocabulary_term_INDEX2_TAGATCGC = tr.createNewVocabularyTerm('TAGATCGC') +vocabulary_term_INDEX2_TAGATCGC.setDescription('Nextera DNA') +vocabulary_term_INDEX2_TAGATCGC.setLabel('Index2 (i5) N501 TAGATCGC') +vocabulary_term_INDEX2_TAGATCGC.setOrdinal(2) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_TAGATCGC) + +vocabulary_term_INDEX2_CTCTCTAT = tr.createNewVocabularyTerm('CTCTCTAT') +vocabulary_term_INDEX2_CTCTCTAT.setDescription('Nextera DNA') +vocabulary_term_INDEX2_CTCTCTAT.setLabel('Index2 (i5) N502 CTCTCTAT') +vocabulary_term_INDEX2_CTCTCTAT.setOrdinal(3) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_CTCTCTAT) + +vocabulary_term_INDEX2_TATCCTCT = tr.createNewVocabularyTerm('TATCCTCT') +vocabulary_term_INDEX2_TATCCTCT.setDescription('Nextera DNA') +vocabulary_term_INDEX2_TATCCTCT.setLabel('Index2 (i5) N503 TATCCTCT') +vocabulary_term_INDEX2_TATCCTCT.setOrdinal(4) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_TATCCTCT) + +vocabulary_term_INDEX2_AGAGTAGA = tr.createNewVocabularyTerm('AGAGTAGA') +vocabulary_term_INDEX2_AGAGTAGA.setDescription('Nextera DNA') +vocabulary_term_INDEX2_AGAGTAGA.setLabel('Index2 (i5) N504 AGAGTAGA') +vocabulary_term_INDEX2_AGAGTAGA.setOrdinal(5) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_AGAGTAGA) + +vocabulary_term_INDEX2_GTAAGGAG = tr.createNewVocabularyTerm('GTAAGGAG') +vocabulary_term_INDEX2_GTAAGGAG.setDescription('Nextera DNA') +vocabulary_term_INDEX2_GTAAGGAG.setLabel('Index2 (i5) N505 GTAAGGAG') +vocabulary_term_INDEX2_GTAAGGAG.setOrdinal(6) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_GTAAGGAG) + +vocabulary_term_INDEX2_ACTGCATA = tr.createNewVocabularyTerm('ACTGCATA') +vocabulary_term_INDEX2_ACTGCATA.setDescription('Nextera DNA') +vocabulary_term_INDEX2_ACTGCATA.setLabel('Index2 (i5) N506 ACTGCATA') +vocabulary_term_INDEX2_ACTGCATA.setOrdinal(7) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_ACTGCATA) + +vocabulary_term_INDEX2_AAGGAGTA = tr.createNewVocabularyTerm('AAGGAGTA') +vocabulary_term_INDEX2_AAGGAGTA.setDescription('Nextera DNA') +vocabulary_term_INDEX2_AAGGAGTA.setLabel('Index2 (i5) N507 AAGGAGTA') +vocabulary_term_INDEX2_AAGGAGTA.setOrdinal(8) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_AAGGAGTA) + +vocabulary_term_INDEX2_CTAAGCCT = tr.createNewVocabularyTerm('CTAAGCCT') +vocabulary_term_INDEX2_CTAAGCCT.setDescription('Nextera DNA') +vocabulary_term_INDEX2_CTAAGCCT.setLabel('Index2 (i5) N508 CTAAGCCT') +vocabulary_term_INDEX2_CTAAGCCT.setOrdinal(9) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_CTAAGCCT) + +vocabulary_term_INDEX2_NOINDEX = tr.createNewVocabularyTerm('NOINDEX') +vocabulary_term_INDEX2_NOINDEX.setDescription(None) +vocabulary_term_INDEX2_NOINDEX.setLabel(None) +vocabulary_term_INDEX2_NOINDEX.setOrdinal(10) +vocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_NOINDEX) + +vocabulary_KIT = tr.getOrCreateNewVocabulary('KIT') +vocabulary_KIT.setDescription('Illumina Kit used for preparation') +vocabulary_KIT.setUrlTemplate(None) +vocabulary_KIT.setManagedInternally(False) +vocabulary_KIT.setInternalNamespace(False) +vocabulary_KIT.setChosenFromList(True) + +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP = tr.createNewVocabularyTerm('CHIP_SEQ_SAMPLE_PREP') +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setLabel('ChIP-Seq Sample Preparation Kit') +vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setOrdinal(1) +vocabulary_KIT.addTerm(vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP) + +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1 = tr.createNewVocabularyTerm('NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1') +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setDescription(None) +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setLabel('NEB Genomic DNA Sample Preparation Kit') +vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setOrdinal(2) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1) + +vocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT = tr.createNewVocabularyTerm('NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT') +vocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT.setDescription(None) +vocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT.setLabel('NEB_ChIP_Seq_Sample_Preparation_Kit') +vocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT.setOrdinal(3) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT) + +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP = tr.createNewVocabularyTerm('GENOMICDNA_SAMPLE_PREP') +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setLabel('Illumina Genomic DNA Sample Preparation Kit') +vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setOrdinal(4) +vocabulary_KIT.addTerm(vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP) + +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP = tr.createNewVocabularyTerm('PAIRED_END_DNA_SAMPLE_PREP') +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setLabel('Paired End DNA Sample Prep Oligo Kit') +vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setOrdinal(5) +vocabulary_KIT.addTerm(vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP) + +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP = tr.createNewVocabularyTerm('MRNA_SEQ_SAMPLE_PREP') +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setDescription(None) +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setLabel('mRNA-Seq Sample Preparation Kit') +vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setOrdinal(6) +vocabulary_KIT.addTerm(vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP) + +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT = tr.createNewVocabularyTerm('RIBOZERO_SCRIPTSEQ_MRNA-SEQ_KIT') +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setDescription(None) +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setLabel('RiboZero ScriptSeq mRNA-Seq_Epicentre-kit') +vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setOrdinal(7) +vocabulary_KIT.addTerm(vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT) + +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT = tr.createNewVocabularyTerm('POLYA_SCRIPTSEQ_MRNA-SEQ_KIT') +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setDescription(None) +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setLabel('PolyA(Beads) ScriptSeq mRNA-Seq_Epicentre-kit') +vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setOrdinal(8) +vocabulary_KIT.addTerm(vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT) + +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS = tr.createNewVocabularyTerm('NEXTERA_DNA_SAMPLE_PREP_KITS') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setDescription(None) +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setLabel('Nextera Genomic DNA Sample Preparation Kit BufferLMW(Epicentre)') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setOrdinal(9) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS) + +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW = tr.createNewVocabularyTerm('NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setDescription(None) +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setLabel('Nextera Genomic DNA Sample Preparation Kit BufferHMW(Epicentre)') +vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setOrdinal(10) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW) + +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM = tr.createNewVocabularyTerm('AGILENT_SURESELECT_ENRICHMENTSYSTEM') +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setDescription(None) +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setLabel('Agilent_SureSelect_EnrichmentSystem') +vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setOrdinal(11) +vocabulary_KIT.addTerm(vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM) + +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUSEQRNA_SAMPLE_PREP_KIT') +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setDescription(None) +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setLabel('TruSeq_RNA_SamplePrepKit_Illumina') +vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setOrdinal(12) +vocabulary_KIT.addTerm(vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT) + +vocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUESEQ_CHIP_SAMPLE_PREP_KIT') +vocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT.setDescription(None) +vocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT.setLabel(None) +vocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT.setOrdinal(13) +vocabulary_KIT.addTerm(vocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT) + +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUSEQ_DNA_SAMPLE_PREP_KIT') +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setDescription(None) +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setLabel('TruSeq_DNA_SamplePrepKit_Illumina') +vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setOrdinal(14) +vocabulary_KIT.addTerm(vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT) + +vocabulary_term_KIT_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_KIT_NONE.setDescription(None) +vocabulary_term_KIT_NONE.setLabel('None (Already prepared)') +vocabulary_term_KIT_NONE.setOrdinal(15) +vocabulary_KIT.addTerm(vocabulary_term_KIT_NONE) + +vocabulary_MACS_VERSION = tr.getOrCreateNewVocabulary('MACS_VERSION') +vocabulary_MACS_VERSION.setDescription('Used MACS version for Peak Calling') +vocabulary_MACS_VERSION.setUrlTemplate(None) +vocabulary_MACS_VERSION.setManagedInternally(False) +vocabulary_MACS_VERSION.setInternalNamespace(False) +vocabulary_MACS_VERSION.setChosenFromList(True) + +vocabulary_term_MACS_VERSION_140RC2 = tr.createNewVocabularyTerm('1.4.0RC2') +vocabulary_term_MACS_VERSION_140RC2.setDescription(None) +vocabulary_term_MACS_VERSION_140RC2.setLabel('macs14 1.4.0rc2 20110214 (Valentine)') +vocabulary_term_MACS_VERSION_140RC2.setOrdinal(1) +vocabulary_MACS_VERSION.addTerm(vocabulary_term_MACS_VERSION_140RC2) + +vocabulary_term_MACS_VERSION_1371 = tr.createNewVocabularyTerm('1.3.7.1') +vocabulary_term_MACS_VERSION_1371.setDescription(None) +vocabulary_term_MACS_VERSION_1371.setLabel('macs 1.3.7.1 (Oktoberfest, bug fixed #1)') +vocabulary_term_MACS_VERSION_1371.setOrdinal(2) +vocabulary_MACS_VERSION.addTerm(vocabulary_term_MACS_VERSION_1371) + +vocabulary_MISMATCH_IN_INDEX = tr.getOrCreateNewVocabulary('MISMATCH_IN_INDEX') +vocabulary_MISMATCH_IN_INDEX.setDescription('Mismatch in Index allowed') +vocabulary_MISMATCH_IN_INDEX.setUrlTemplate(None) +vocabulary_MISMATCH_IN_INDEX.setManagedInternally(False) +vocabulary_MISMATCH_IN_INDEX.setInternalNamespace(False) +vocabulary_MISMATCH_IN_INDEX.setChosenFromList(True) + +vocabulary_term_MISMATCH_IN_INDEX_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_MISMATCH_IN_INDEX_NONE.setDescription(None) +vocabulary_term_MISMATCH_IN_INDEX_NONE.setLabel(None) +vocabulary_term_MISMATCH_IN_INDEX_NONE.setOrdinal(1) +vocabulary_MISMATCH_IN_INDEX.addTerm(vocabulary_term_MISMATCH_IN_INDEX_NONE) + +vocabulary_term_MISMATCH_IN_INDEX_ONE = tr.createNewVocabularyTerm('ONE') +vocabulary_term_MISMATCH_IN_INDEX_ONE.setDescription(None) +vocabulary_term_MISMATCH_IN_INDEX_ONE.setLabel(None) +vocabulary_term_MISMATCH_IN_INDEX_ONE.setOrdinal(2) +vocabulary_MISMATCH_IN_INDEX.addTerm(vocabulary_term_MISMATCH_IN_INDEX_ONE) + +vocabulary_NANO_DROP = tr.getOrCreateNewVocabulary('NANO_DROP') +vocabulary_NANO_DROP.setDescription('Device for measuring the total amount of genetic material contained in the probe') +vocabulary_NANO_DROP.setUrlTemplate(None) +vocabulary_NANO_DROP.setManagedInternally(False) +vocabulary_NANO_DROP.setInternalNamespace(False) +vocabulary_NANO_DROP.setChosenFromList(True) + +vocabulary_term_NANO_DROP_CONCND3300 = tr.createNewVocabularyTerm('CONCND3300') +vocabulary_term_NANO_DROP_CONCND3300.setDescription(None) +vocabulary_term_NANO_DROP_CONCND3300.setLabel('Conc Nano Drop 3300') +vocabulary_term_NANO_DROP_CONCND3300.setOrdinal(1) +vocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND3300) + +vocabulary_term_NANO_DROP_CONCND1000 = tr.createNewVocabularyTerm('CONCND1000') +vocabulary_term_NANO_DROP_CONCND1000.setDescription(None) +vocabulary_term_NANO_DROP_CONCND1000.setLabel('Conc Nano Drop 1000') +vocabulary_term_NANO_DROP_CONCND1000.setOrdinal(2) +vocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND1000) + +vocabulary_term_NANO_DROP_CONCND2000 = tr.createNewVocabularyTerm('CONCND2000') +vocabulary_term_NANO_DROP_CONCND2000.setDescription(None) +vocabulary_term_NANO_DROP_CONCND2000.setLabel('Conc Nano Drop 2000') +vocabulary_term_NANO_DROP_CONCND2000.setOrdinal(3) +vocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND2000) + +vocabulary_NCBI_TAXONOMY = tr.getOrCreateNewVocabulary('NCBI_TAXONOMY') +vocabulary_NCBI_TAXONOMY.setDescription(None) +vocabulary_NCBI_TAXONOMY.setUrlTemplate('http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$term$') +vocabulary_NCBI_TAXONOMY.setManagedInternally(False) +vocabulary_NCBI_TAXONOMY.setInternalNamespace(False) +vocabulary_NCBI_TAXONOMY.setChosenFromList(True) + +vocabulary_term_NCBI_TAXONOMY_10090 = tr.createNewVocabularyTerm('10090') +vocabulary_term_NCBI_TAXONOMY_10090.setDescription('Genbank common name: house mouse\ Inherited blast name: rodents') +vocabulary_term_NCBI_TAXONOMY_10090.setLabel('Mus musculus') +vocabulary_term_NCBI_TAXONOMY_10090.setOrdinal(1) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10090) + +vocabulary_term_NCBI_TAXONOMY_9606 = tr.createNewVocabularyTerm('9606') +vocabulary_term_NCBI_TAXONOMY_9606.setDescription('Genbank common name: human\ Inherited blast name: primates') +vocabulary_term_NCBI_TAXONOMY_9606.setLabel('Homo sapiens') +vocabulary_term_NCBI_TAXONOMY_9606.setOrdinal(2) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9606) + +vocabulary_term_NCBI_TAXONOMY_7227 = tr.createNewVocabularyTerm('7227') +vocabulary_term_NCBI_TAXONOMY_7227.setDescription('Genbank common name: fruit fly\ Inherited blast name: flies') +vocabulary_term_NCBI_TAXONOMY_7227.setLabel('Drosophila melanogaster') +vocabulary_term_NCBI_TAXONOMY_7227.setOrdinal(3) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_7227) + +vocabulary_term_NCBI_TAXONOMY_6239 = tr.createNewVocabularyTerm('6239') +vocabulary_term_NCBI_TAXONOMY_6239.setDescription('Inherited blast name: nematodes') +vocabulary_term_NCBI_TAXONOMY_6239.setLabel('Caenorhabditis elegans') +vocabulary_term_NCBI_TAXONOMY_6239.setOrdinal(4) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_6239) + +vocabulary_term_NCBI_TAXONOMY_4932 = tr.createNewVocabularyTerm('4932') +vocabulary_term_NCBI_TAXONOMY_4932.setDescription('Genbank common name: baker\'s yeast\ Inherited blast name: ascomycetes') +vocabulary_term_NCBI_TAXONOMY_4932.setLabel('Saccharomyces cerevisiae') +vocabulary_term_NCBI_TAXONOMY_4932.setOrdinal(5) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4932) + +vocabulary_term_NCBI_TAXONOMY_10116 = tr.createNewVocabularyTerm('10116') +vocabulary_term_NCBI_TAXONOMY_10116.setDescription('Genbank common name: Norway rat\ Inherited blast name: rodents') +vocabulary_term_NCBI_TAXONOMY_10116.setLabel('Rattus norvegicus') +vocabulary_term_NCBI_TAXONOMY_10116.setOrdinal(6) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10116) + +vocabulary_term_NCBI_TAXONOMY_6669 = tr.createNewVocabularyTerm('6669') +vocabulary_term_NCBI_TAXONOMY_6669.setDescription('Genbank common name: common water flea\ Inherited blast name: crustaceans') +vocabulary_term_NCBI_TAXONOMY_6669.setLabel('Daphnia pulex') +vocabulary_term_NCBI_TAXONOMY_6669.setOrdinal(7) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_6669) + +vocabulary_term_NCBI_TAXONOMY_562 = tr.createNewVocabularyTerm('562') +vocabulary_term_NCBI_TAXONOMY_562.setDescription('Inherited blast name: enterobacteria') +vocabulary_term_NCBI_TAXONOMY_562.setLabel('Escherichia coli') +vocabulary_term_NCBI_TAXONOMY_562.setOrdinal(8) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_562) + +vocabulary_term_NCBI_TAXONOMY_623 = tr.createNewVocabularyTerm('623') +vocabulary_term_NCBI_TAXONOMY_623.setDescription('Inherited blast name: enterobacteria') +vocabulary_term_NCBI_TAXONOMY_623.setLabel('Shigella flexneri') +vocabulary_term_NCBI_TAXONOMY_623.setOrdinal(9) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_623) + +vocabulary_term_NCBI_TAXONOMY_10847 = tr.createNewVocabularyTerm('10847') +vocabulary_term_NCBI_TAXONOMY_10847.setDescription('Inherited blast name: viruses') +vocabulary_term_NCBI_TAXONOMY_10847.setLabel('Enterobacteria phage phiX174') +vocabulary_term_NCBI_TAXONOMY_10847.setOrdinal(10) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10847) + +vocabulary_term_NCBI_TAXONOMY_190650 = tr.createNewVocabularyTerm('190650') +vocabulary_term_NCBI_TAXONOMY_190650.setDescription('Inherited blast name: a-proteobacteria') +vocabulary_term_NCBI_TAXONOMY_190650.setLabel('Caulobacter crescentus CB15') +vocabulary_term_NCBI_TAXONOMY_190650.setOrdinal(11) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_190650) + +vocabulary_term_NCBI_TAXONOMY_8113 = tr.createNewVocabularyTerm('8113') +vocabulary_term_NCBI_TAXONOMY_8113.setDescription('Genbank common name: cichlids\ Inherited blast name: bony fishes') +vocabulary_term_NCBI_TAXONOMY_8113.setLabel('Cichlidae') +vocabulary_term_NCBI_TAXONOMY_8113.setOrdinal(12) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_8113) + +vocabulary_term_NCBI_TAXONOMY_481459 = tr.createNewVocabularyTerm('481459') +vocabulary_term_NCBI_TAXONOMY_481459.setDescription('Genbank common name: three-spined stickleback\ Inherited blast name: bony fishes') +vocabulary_term_NCBI_TAXONOMY_481459.setLabel('Gasterosteus aculeatus aculeatus') +vocabulary_term_NCBI_TAXONOMY_481459.setOrdinal(13) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_481459) + +vocabulary_term_NCBI_TAXONOMY_282301 = tr.createNewVocabularyTerm('282301') +vocabulary_term_NCBI_TAXONOMY_282301.setDescription('Inherited blast name: flatworms') +vocabulary_term_NCBI_TAXONOMY_282301.setLabel('Macrostomum lignano') +vocabulary_term_NCBI_TAXONOMY_282301.setOrdinal(14) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_282301) + +vocabulary_term_NCBI_TAXONOMY_99287 = tr.createNewVocabularyTerm('99287') +vocabulary_term_NCBI_TAXONOMY_99287.setDescription('Inherited blast name: enterobacteria') +vocabulary_term_NCBI_TAXONOMY_99287.setLabel('Salmonella enterica subsp. enterica serovar Typhimurium str. LT2') +vocabulary_term_NCBI_TAXONOMY_99287.setOrdinal(15) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_99287) + +vocabulary_term_NCBI_TAXONOMY_4896 = tr.createNewVocabularyTerm('4896') +vocabulary_term_NCBI_TAXONOMY_4896.setDescription('Genbank common name: fission yeast\ Inherited blast name: ascomycetes') +vocabulary_term_NCBI_TAXONOMY_4896.setLabel('Schizosaccharomyces pombe') +vocabulary_term_NCBI_TAXONOMY_4896.setOrdinal(16) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4896) + +vocabulary_term_NCBI_TAXONOMY_4897 = tr.createNewVocabularyTerm('4897') +vocabulary_term_NCBI_TAXONOMY_4897.setDescription('Inherited blast name: ascomycetes') +vocabulary_term_NCBI_TAXONOMY_4897.setLabel('Schizosaccharomyces japonicus') +vocabulary_term_NCBI_TAXONOMY_4897.setOrdinal(17) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4897) + +vocabulary_term_NCBI_TAXONOMY_7955 = tr.createNewVocabularyTerm('7955') +vocabulary_term_NCBI_TAXONOMY_7955.setDescription('Genbank common name: zebrafish\ Inherited blast name: bony fishes') +vocabulary_term_NCBI_TAXONOMY_7955.setLabel('Danio rerio') +vocabulary_term_NCBI_TAXONOMY_7955.setOrdinal(18) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_7955) + +vocabulary_term_NCBI_TAXONOMY_3702 = tr.createNewVocabularyTerm('3702') +vocabulary_term_NCBI_TAXONOMY_3702.setDescription('Genbank common name: thale cress\ Inherited blast name: eudicots') +vocabulary_term_NCBI_TAXONOMY_3702.setLabel('Arabidopsis thaliana') +vocabulary_term_NCBI_TAXONOMY_3702.setOrdinal(19) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3702) + +vocabulary_term_NCBI_TAXONOMY_225322 = tr.createNewVocabularyTerm('225322') +vocabulary_term_NCBI_TAXONOMY_225322.setDescription('Bacterium which infects Daphnia\ Pasteuria ramosa Metchnikoff 1888 (Approved Lists 1980) emend. Starr et al. 1986\ Ebert D, Rainey P, Embley TM, Scholz D. Development, life\ cycle, ultrastructure and phylogenetic position of Pasteuria ramosa Metchnikoff 1888: rediscovery of an obligate \ endoparasite of Daphnia magna Straus. Philos Trans R Soc \ Lond Ser B. 1996;351:1689.') +vocabulary_term_NCBI_TAXONOMY_225322.setLabel('Pasteuria ramosa') +vocabulary_term_NCBI_TAXONOMY_225322.setOrdinal(20) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_225322) + +vocabulary_term_NCBI_TAXONOMY_9913 = tr.createNewVocabularyTerm('9913') +vocabulary_term_NCBI_TAXONOMY_9913.setDescription('Genbank common name: cattle\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9913.setLabel('Bos taurus') +vocabulary_term_NCBI_TAXONOMY_9913.setOrdinal(21) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9913) + +vocabulary_term_NCBI_TAXONOMY_9823 = tr.createNewVocabularyTerm('9823') +vocabulary_term_NCBI_TAXONOMY_9823.setDescription('Genbank common name: pig\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9823.setLabel('Sus scrofa') +vocabulary_term_NCBI_TAXONOMY_9823.setOrdinal(22) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9823) + +vocabulary_term_NCBI_TAXONOMY_9940 = tr.createNewVocabularyTerm('9940') +vocabulary_term_NCBI_TAXONOMY_9940.setDescription('Genbank common name: sheep\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9940.setLabel('Ovis aries') +vocabulary_term_NCBI_TAXONOMY_9940.setOrdinal(23) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9940) + +vocabulary_term_NCBI_TAXONOMY_9925 = tr.createNewVocabularyTerm('9925') +vocabulary_term_NCBI_TAXONOMY_9925.setDescription('Genbank common name: goat\ Inherited blast name: even-toed ungulates') +vocabulary_term_NCBI_TAXONOMY_9925.setLabel('Capra hircus') +vocabulary_term_NCBI_TAXONOMY_9925.setOrdinal(24) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9925) + +vocabulary_term_NCBI_TAXONOMY_8153 = tr.createNewVocabularyTerm('8153') +vocabulary_term_NCBI_TAXONOMY_8153.setDescription('Common name: cichlid fish') +vocabulary_term_NCBI_TAXONOMY_8153.setLabel('Haplochromis burtoni') +vocabulary_term_NCBI_TAXONOMY_8153.setOrdinal(25) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_8153) + +vocabulary_term_NCBI_TAXONOMY_61818 = tr.createNewVocabularyTerm('61818') +vocabulary_term_NCBI_TAXONOMY_61818.setDescription('Common name: bony fish') +vocabulary_term_NCBI_TAXONOMY_61818.setLabel('Amphilophus (nicaraguan)') +vocabulary_term_NCBI_TAXONOMY_61818.setOrdinal(26) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_61818) + +vocabulary_term_NCBI_TAXONOMY_35525 = tr.createNewVocabularyTerm('35525') +vocabulary_term_NCBI_TAXONOMY_35525.setDescription('Common name: water flea') +vocabulary_term_NCBI_TAXONOMY_35525.setLabel('Daphnia Magna') +vocabulary_term_NCBI_TAXONOMY_35525.setOrdinal(27) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_35525) + +vocabulary_term_NCBI_TAXONOMY_4081 = tr.createNewVocabularyTerm('4081') +vocabulary_term_NCBI_TAXONOMY_4081.setDescription('Common Name: tomato') +vocabulary_term_NCBI_TAXONOMY_4081.setLabel('Solanum lycopersicum (tomato)') +vocabulary_term_NCBI_TAXONOMY_4081.setOrdinal(28) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4081) + +vocabulary_term_NCBI_TAXONOMY_13068 = tr.createNewVocabularyTerm('13068') +vocabulary_term_NCBI_TAXONOMY_13068.setDescription('Common name: earwig') +vocabulary_term_NCBI_TAXONOMY_13068.setLabel('Forficula auricularia (earwig)') +vocabulary_term_NCBI_TAXONOMY_13068.setOrdinal(29) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_13068) + +vocabulary_term_NCBI_TAXONOMY_3569 = tr.createNewVocabularyTerm('3569') +vocabulary_term_NCBI_TAXONOMY_3569.setDescription('Genbank common name: clove pink') +vocabulary_term_NCBI_TAXONOMY_3569.setLabel('Dianthus') +vocabulary_term_NCBI_TAXONOMY_3569.setOrdinal(30) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3569) + +vocabulary_term_NCBI_TAXONOMY_3573 = tr.createNewVocabularyTerm('3573') +vocabulary_term_NCBI_TAXONOMY_3573.setDescription('Genbank common name: campions\ Inherited blast name: eudicots') +vocabulary_term_NCBI_TAXONOMY_3573.setLabel('Silene') +vocabulary_term_NCBI_TAXONOMY_3573.setOrdinal(31) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3573) + +vocabulary_term_NCBI_TAXONOMY_32644 = tr.createNewVocabularyTerm('32644') +vocabulary_term_NCBI_TAXONOMY_32644.setDescription('Inherited blast name: unclassified') +vocabulary_term_NCBI_TAXONOMY_32644.setLabel('unidentified') +vocabulary_term_NCBI_TAXONOMY_32644.setOrdinal(32) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_32644) + +vocabulary_term_NCBI_TAXONOMY_0000 = tr.createNewVocabularyTerm('0000') +vocabulary_term_NCBI_TAXONOMY_0000.setDescription(None) +vocabulary_term_NCBI_TAXONOMY_0000.setLabel('OTHER') +vocabulary_term_NCBI_TAXONOMY_0000.setOrdinal(33) +vocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_0000) + +vocabulary_PIPELINE_VERSION = tr.getOrCreateNewVocabulary('PIPELINE_VERSION') +vocabulary_PIPELINE_VERSION.setDescription('With which pipeline version has the data been analyzed?') +vocabulary_PIPELINE_VERSION.setUrlTemplate(None) +vocabulary_PIPELINE_VERSION.setManagedInternally(False) +vocabulary_PIPELINE_VERSION.setInternalNamespace(False) +vocabulary_PIPELINE_VERSION.setChosenFromList(True) + +vocabulary_term_PIPELINE_VERSION_11348 = tr.createNewVocabularyTerm('1.13.48') +vocabulary_term_PIPELINE_VERSION_11348.setDescription(None) +vocabulary_term_PIPELINE_VERSION_11348.setLabel('RTA 1.13.48') +vocabulary_term_PIPELINE_VERSION_11348.setOrdinal(1) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_11348) + +vocabulary_term_PIPELINE_VERSION_11242 = tr.createNewVocabularyTerm('1.12.4.2') +vocabulary_term_PIPELINE_VERSION_11242.setDescription('Real Time Analysis in combination with HCS 1.4.8') +vocabulary_term_PIPELINE_VERSION_11242.setLabel('RTA 1.12.4.2 (HiSeq 2000)') +vocabulary_term_PIPELINE_VERSION_11242.setOrdinal(2) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_11242) + +vocabulary_term_PIPELINE_VERSION_112 = tr.createNewVocabularyTerm('1.12') +vocabulary_term_PIPELINE_VERSION_112.setDescription('Real Time Analysis 1.12 HiSeq 2000') +vocabulary_term_PIPELINE_VERSION_112.setLabel('RTA 1.12') +vocabulary_term_PIPELINE_VERSION_112.setOrdinal(3) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_112) + +vocabulary_term_PIPELINE_VERSION_19 = tr.createNewVocabularyTerm('1.9') +vocabulary_term_PIPELINE_VERSION_19.setDescription('Real Time Analysis 1.9') +vocabulary_term_PIPELINE_VERSION_19.setLabel('RTA 1.9 (GA IIx)') +vocabulary_term_PIPELINE_VERSION_19.setOrdinal(4) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_19) + +vocabulary_term_PIPELINE_VERSION_RTA_18 = tr.createNewVocabularyTerm('RTA_1.8') +vocabulary_term_PIPELINE_VERSION_RTA_18.setDescription('Real Time Analysis 1.8') +vocabulary_term_PIPELINE_VERSION_RTA_18.setLabel('RTA 1.8') +vocabulary_term_PIPELINE_VERSION_RTA_18.setOrdinal(5) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_18) + +vocabulary_term_PIPELINE_VERSION_RTA_16 = tr.createNewVocabularyTerm('RTA_1.6') +vocabulary_term_PIPELINE_VERSION_RTA_16.setDescription('Real Time Analysis 1.6') +vocabulary_term_PIPELINE_VERSION_RTA_16.setLabel('RTA 1.6') +vocabulary_term_PIPELINE_VERSION_RTA_16.setOrdinal(6) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_16) + +vocabulary_term_PIPELINE_VERSION_RTA_15 = tr.createNewVocabularyTerm('RTA_1.5') +vocabulary_term_PIPELINE_VERSION_RTA_15.setDescription(None) +vocabulary_term_PIPELINE_VERSION_RTA_15.setLabel('RTA 1.5') +vocabulary_term_PIPELINE_VERSION_RTA_15.setOrdinal(7) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_15) + +vocabulary_term_PIPELINE_VERSION_RTA_14150 = tr.createNewVocabularyTerm('RTA_1.4.15.0') +vocabulary_term_PIPELINE_VERSION_RTA_14150.setDescription(None) +vocabulary_term_PIPELINE_VERSION_RTA_14150.setLabel('RTA 1.4.15.0') +vocabulary_term_PIPELINE_VERSION_RTA_14150.setOrdinal(8) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_14150) + +vocabulary_term_PIPELINE_VERSION_15 = tr.createNewVocabularyTerm('1.5') +vocabulary_term_PIPELINE_VERSION_15.setDescription(None) +vocabulary_term_PIPELINE_VERSION_15.setLabel(None) +vocabulary_term_PIPELINE_VERSION_15.setOrdinal(9) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_15) + +vocabulary_term_PIPELINE_VERSION_14 = tr.createNewVocabularyTerm('1.4') +vocabulary_term_PIPELINE_VERSION_14.setDescription(None) +vocabulary_term_PIPELINE_VERSION_14.setLabel(None) +vocabulary_term_PIPELINE_VERSION_14.setOrdinal(10) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_14) + +vocabulary_term_PIPELINE_VERSION_132 = tr.createNewVocabularyTerm('1.3.2') +vocabulary_term_PIPELINE_VERSION_132.setDescription(None) +vocabulary_term_PIPELINE_VERSION_132.setLabel(None) +vocabulary_term_PIPELINE_VERSION_132.setOrdinal(11) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_132) + +vocabulary_term_PIPELINE_VERSION_10 = tr.createNewVocabularyTerm('1.0') +vocabulary_term_PIPELINE_VERSION_10.setDescription(None) +vocabulary_term_PIPELINE_VERSION_10.setLabel(None) +vocabulary_term_PIPELINE_VERSION_10.setOrdinal(12) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_10) + +vocabulary_term_PIPELINE_VERSION_PRE_10 = tr.createNewVocabularyTerm('PRE_1.0') +vocabulary_term_PIPELINE_VERSION_PRE_10.setDescription('Before Pipeline Version 1.0') +vocabulary_term_PIPELINE_VERSION_PRE_10.setLabel(None) +vocabulary_term_PIPELINE_VERSION_PRE_10.setOrdinal(13) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_PRE_10) + +vocabulary_term_PIPELINE_VERSION_NONE = tr.createNewVocabularyTerm('NONE') +vocabulary_term_PIPELINE_VERSION_NONE.setDescription(None) +vocabulary_term_PIPELINE_VERSION_NONE.setLabel(None) +vocabulary_term_PIPELINE_VERSION_NONE.setOrdinal(14) +vocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_NONE) + +vocabulary_SAMPLE_TYPE = tr.getOrCreateNewVocabulary('SAMPLE_TYPE') +vocabulary_SAMPLE_TYPE.setDescription('Type of sample delivered by the customer') +vocabulary_SAMPLE_TYPE.setUrlTemplate(None) +vocabulary_SAMPLE_TYPE.setManagedInternally(False) +vocabulary_SAMPLE_TYPE.setInternalNamespace(False) +vocabulary_SAMPLE_TYPE.setChosenFromList(True) + +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY = tr.createNewVocabularyTerm('PROCESSED_DNA_LIBRARY') +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setDescription(None) +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setLabel(None) +vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setOrdinal(1) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY) + +vocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE = tr.createNewVocabularyTerm('POOLED_SAMPLE') +vocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE.setDescription(None) +vocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE.setLabel(None) +vocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE.setOrdinal(2) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE) + +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA = tr.createNewVocabularyTerm('GENOMIC_DNA') +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setOrdinal(3) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA) + +vocabulary_term_SAMPLE_TYPE_SMALL_RNA = tr.createNewVocabularyTerm('SMALL_RNA') +vocabulary_term_SAMPLE_TYPE_SMALL_RNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_SMALL_RNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_SMALL_RNA.setOrdinal(4) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_SMALL_RNA) + +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA = tr.createNewVocabularyTerm('TOTAL_RNA') +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setOrdinal(5) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_TOTAL_RNA) + +vocabulary_term_SAMPLE_TYPE_CHIP = tr.createNewVocabularyTerm('CHIP') +vocabulary_term_SAMPLE_TYPE_CHIP.setDescription(None) +vocabulary_term_SAMPLE_TYPE_CHIP.setLabel(None) +vocabulary_term_SAMPLE_TYPE_CHIP.setOrdinal(6) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_CHIP) + +vocabulary_term_SAMPLE_TYPE_VIRAL = tr.createNewVocabularyTerm('VIRAL') +vocabulary_term_SAMPLE_TYPE_VIRAL.setDescription(None) +vocabulary_term_SAMPLE_TYPE_VIRAL.setLabel(None) +vocabulary_term_SAMPLE_TYPE_VIRAL.setOrdinal(7) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_VIRAL) + +vocabulary_term_SAMPLE_TYPE_SYNTHETIC = tr.createNewVocabularyTerm('SYNTHETIC') +vocabulary_term_SAMPLE_TYPE_SYNTHETIC.setDescription(None) +vocabulary_term_SAMPLE_TYPE_SYNTHETIC.setLabel(None) +vocabulary_term_SAMPLE_TYPE_SYNTHETIC.setOrdinal(8) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_SYNTHETIC) + +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA = tr.createNewVocabularyTerm('FRAGMENTED_GENOMIC_DNA') +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setOrdinal(9) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA) + +vocabulary_term_SAMPLE_TYPE_MRNA = tr.createNewVocabularyTerm('MRNA') +vocabulary_term_SAMPLE_TYPE_MRNA.setDescription(None) +vocabulary_term_SAMPLE_TYPE_MRNA.setLabel(None) +vocabulary_term_SAMPLE_TYPE_MRNA.setOrdinal(10) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_MRNA) + +vocabulary_term_SAMPLE_TYPE_OTHER = tr.createNewVocabularyTerm('OTHER') +vocabulary_term_SAMPLE_TYPE_OTHER.setDescription(None) +vocabulary_term_SAMPLE_TYPE_OTHER.setLabel(None) +vocabulary_term_SAMPLE_TYPE_OTHER.setOrdinal(11) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_OTHER) + +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP = tr.createNewVocabularyTerm('BISULFITE_CHIP') +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setDescription(None) +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setLabel(None) +vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setOrdinal(13) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP) + +vocabulary_term_SAMPLE_TYPE_NONGENOMIC = tr.createNewVocabularyTerm('NON-GENOMIC') +vocabulary_term_SAMPLE_TYPE_NONGENOMIC.setDescription(None) +vocabulary_term_SAMPLE_TYPE_NONGENOMIC.setLabel(None) +vocabulary_term_SAMPLE_TYPE_NONGENOMIC.setOrdinal(14) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_NONGENOMIC) + +vocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED = tr.createNewVocabularyTerm('BISULFITE_TREATED') +vocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED.setDescription(None) +vocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED.setLabel(None) +vocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED.setOrdinal(15) +vocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED) + +vocabulary_SBS_SEQUENCING_KIT_VERSION = tr.getOrCreateNewVocabulary('SBS_SEQUENCING_KIT_VERSION') +vocabulary_SBS_SEQUENCING_KIT_VERSION.setDescription('Version of the Sequencing by Synthesis (SBS) Kit') +vocabulary_SBS_SEQUENCING_KIT_VERSION.setUrlTemplate(None) +vocabulary_SBS_SEQUENCING_KIT_VERSION.setManagedInternally(False) +vocabulary_SBS_SEQUENCING_KIT_VERSION.setInternalNamespace(False) +vocabulary_SBS_SEQUENCING_KIT_VERSION.setChosenFromList(True) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5 = tr.createNewVocabularyTerm('TRUSEQ_V5') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setLabel('TruSeq v5') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setOrdinal(1) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5 = tr.createNewVocabularyTerm('V5') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setLabel(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setOrdinal(2) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4 = tr.createNewVocabularyTerm('V4') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setLabel(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setOrdinal(3) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3 = tr.createNewVocabularyTerm('V3') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setLabel(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setOrdinal(4) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3) + +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3 = tr.createNewVocabularyTerm('SBS_HS_V3') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setDescription(None) +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setLabel('TruSeq SBS HS v3') +vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setOrdinal(5) +vocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3) + +vocabulary_SEQUENCER = tr.getOrCreateNewVocabulary('SEQUENCER') +vocabulary_SEQUENCER.setDescription('Which Sequencer was used?') +vocabulary_SEQUENCER.setUrlTemplate(None) +vocabulary_SEQUENCER.setManagedInternally(False) +vocabulary_SEQUENCER.setInternalNamespace(False) +vocabulary_SEQUENCER.setChosenFromList(True) + +vocabulary_term_SEQUENCER_M00721 = tr.createNewVocabularyTerm('M00721') +vocabulary_term_SEQUENCER_M00721.setDescription(None) +vocabulary_term_SEQUENCER_M00721.setLabel('MiSeq') +vocabulary_term_SEQUENCER_M00721.setOrdinal(6) +vocabulary_SEQUENCER.addTerm(vocabulary_term_SEQUENCER_M00721) + +vocabulary_term_SEQUENCER_SN792 = tr.createNewVocabularyTerm('SN792') +vocabulary_term_SEQUENCER_SN792.setDescription(None) +vocabulary_term_SEQUENCER_SN792.setLabel('HiSeq 2000') +vocabulary_term_SEQUENCER_SN792.setOrdinal(7) +vocabulary_SEQUENCER.addTerm(vocabulary_term_SEQUENCER_SN792) + +vocabulary_SEQUENCING_APPLICATION = tr.getOrCreateNewVocabulary('SEQUENCING_APPLICATION') +vocabulary_SEQUENCING_APPLICATION.setDescription('Type of experiment of the High Throughput Sequencing applications') +vocabulary_SEQUENCING_APPLICATION.setUrlTemplate(None) +vocabulary_SEQUENCING_APPLICATION.setManagedInternally(False) +vocabulary_SEQUENCING_APPLICATION.setInternalNamespace(False) +vocabulary_SEQUENCING_APPLICATION.setChosenFromList(True) + +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ = tr.createNewVocabularyTerm('SMALL_RNA_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setOrdinal(1) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ) + +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ = tr.createNewVocabularyTerm('RNA_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setOrdinal(2) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ) + +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ = tr.createNewVocabularyTerm('GENOMIC_DNA_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setOrdinal(3) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ) + +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ = tr.createNewVocabularyTerm('CHIP_SEQ') +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setDescription(None) +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setLabel(None) +vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setOrdinal(4) +vocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ) + +vocabulary_YES_NO = tr.getOrCreateNewVocabulary('YES_NO') +vocabulary_YES_NO.setDescription('Just offers YES or NO') +vocabulary_YES_NO.setUrlTemplate(None) +vocabulary_YES_NO.setManagedInternally(False) +vocabulary_YES_NO.setInternalNamespace(False) +vocabulary_YES_NO.setChosenFromList(True) + +vocabulary_term_YES_NO_YES = tr.createNewVocabularyTerm('YES') +vocabulary_term_YES_NO_YES.setDescription(None) +vocabulary_term_YES_NO_YES.setLabel(None) +vocabulary_term_YES_NO_YES.setOrdinal(1) +vocabulary_YES_NO.addTerm(vocabulary_term_YES_NO_YES) + +vocabulary_term_YES_NO_NO = tr.createNewVocabularyTerm('NO') +vocabulary_term_YES_NO_NO.setDescription(None) +vocabulary_term_YES_NO_NO.setLabel(None) +vocabulary_term_YES_NO_NO.setOrdinal(2) +vocabulary_YES_NO.addTerm(vocabulary_term_YES_NO_NO) + +print "Imported 22 Vocabularies" +script_Diff_time = tr.getOrCreateNewScript('Diff_time') +script_Diff_time.setName('Diff_time') +script_Diff_time.setDescription('Calculates the difference of two given dates') +script_Diff_time.setScript('''from datetime import datetime + +def dateTimeSplitter(openbisDate): + dateAndTime, tz = openbisDate.rsplit(" ", 1) + pythonDateTime = datetime.strptime(dateAndTime, "%Y-%m-%d %H:%M:%S") + return pythonDateTime + +def calculate(): + + try: + start = dateTimeSplitter(entity.propertyValue('FLOW_CELL_SEQUENCED_ON')) + end = dateTimeSplitter(entity.propertyValue('SEQUENCER_FINISHED')) + diffTime = end-start + return str(diffTime) + except: + return "N/A" +''') +script_Diff_time.setEntityForScript('SAMPLE') +script_Diff_time.setScriptType('DYNAMIC_PROPERTY') + +script_Has_Parents = tr.getOrCreateNewScript('Has_Parents') +script_Has_Parents.setName('Has_Parents') +script_Has_Parents.setDescription('Check if the Entity has a parent') +script_Has_Parents.setScript('''def validate(entity, isNew): + parents = entity.entityPE().parents + if parents: + return None + else: + return "No Parents have been selected!" +''') +script_Has_Parents.setEntityForScript('SAMPLE') +script_Has_Parents.setScriptType('ENTITY_VALIDATION') + +print "Imported 2 Scripts" +exp_type_HT_SEQUENCING = tr.getOrCreateNewExperimentType('HT_SEQUENCING') +exp_type_HT_SEQUENCING.setDescription('High Throughput Sequencing (e.g. Illumina HiSeq, Illumina GA)') + + +print "Imported 1 Experiment Types" +samp_type_ILLUMINA_FLOW_CELL = tr.getOrCreateNewSampleType('ILLUMINA_FLOW_CELL') +samp_type_ILLUMINA_FLOW_CELL.setDescription('Container of ILLUMINA_FLOW_LANES\ Can be created automatically by a drop box and the properties can be filled from the RunInfo.xml and runParameters.xml files') +samp_type_ILLUMINA_FLOW_CELL.setListable(True) +samp_type_ILLUMINA_FLOW_CELL.setShowContainer(False) +samp_type_ILLUMINA_FLOW_CELL.setShowParents(False) +samp_type_ILLUMINA_FLOW_CELL.setSubcodeUnique(False) +samp_type_ILLUMINA_FLOW_CELL.setAutoGeneratedCode(False) +samp_type_ILLUMINA_FLOW_CELL.setShowParentMetadata(False) +samp_type_ILLUMINA_FLOW_CELL.setGeneratedCodePrefix('FLOWCELL-') + + +samp_type_ILLUMINA_FLOW_LANE = tr.getOrCreateNewSampleType('ILLUMINA_FLOW_LANE') +samp_type_ILLUMINA_FLOW_LANE.setDescription('Child of LIBRARY or POOL') +samp_type_ILLUMINA_FLOW_LANE.setListable(True) +samp_type_ILLUMINA_FLOW_LANE.setShowContainer(True) +samp_type_ILLUMINA_FLOW_LANE.setShowParents(True) +samp_type_ILLUMINA_FLOW_LANE.setSubcodeUnique(False) +samp_type_ILLUMINA_FLOW_LANE.setAutoGeneratedCode(False) +samp_type_ILLUMINA_FLOW_LANE.setShowParentMetadata(True) +samp_type_ILLUMINA_FLOW_LANE.setGeneratedCodePrefix('FLOWLANE-') + + +samp_type_LIBRARY = tr.getOrCreateNewSampleType('LIBRARY') +samp_type_LIBRARY.setDescription('Child of RAW and potential parent of POOL') +samp_type_LIBRARY.setListable(True) +samp_type_LIBRARY.setShowContainer(False) +samp_type_LIBRARY.setShowParents(True) +samp_type_LIBRARY.setSubcodeUnique(False) +samp_type_LIBRARY.setAutoGeneratedCode(True) +samp_type_LIBRARY.setShowParentMetadata(True) +samp_type_LIBRARY.setGeneratedCodePrefix('BSSE-QGF-LIBRARY-') +samp_type_LIBRARY.setValidationScript(script_Has_Parents) + +samp_type_LIBRARY_POOL = tr.getOrCreateNewSampleType('LIBRARY_POOL') +samp_type_LIBRARY_POOL.setDescription('Child of several LIBRARY samples, used for multiplexing') +samp_type_LIBRARY_POOL.setListable(True) +samp_type_LIBRARY_POOL.setShowContainer(False) +samp_type_LIBRARY_POOL.setShowParents(True) +samp_type_LIBRARY_POOL.setSubcodeUnique(False) +samp_type_LIBRARY_POOL.setAutoGeneratedCode(True) +samp_type_LIBRARY_POOL.setShowParentMetadata(True) +samp_type_LIBRARY_POOL.setGeneratedCodePrefix('BSSE-QGF-POOL-') +samp_type_LIBRARY_POOL.setValidationScript(script_Has_Parents) + +samp_type_MASTER_SAMPLE = tr.getOrCreateNewSampleType('MASTER_SAMPLE') +samp_type_MASTER_SAMPLE.setDescription('Sample Type holding Master Data and a parent to RAW') +samp_type_MASTER_SAMPLE.setListable(True) +samp_type_MASTER_SAMPLE.setShowContainer(False) +samp_type_MASTER_SAMPLE.setShowParents(False) +samp_type_MASTER_SAMPLE.setSubcodeUnique(False) +samp_type_MASTER_SAMPLE.setAutoGeneratedCode(True) +samp_type_MASTER_SAMPLE.setShowParentMetadata(False) +samp_type_MASTER_SAMPLE.setGeneratedCodePrefix('BSSE-QGF-MASTER-') + + +samp_type_RAW_SAMPLE = tr.getOrCreateNewSampleType('RAW_SAMPLE') +samp_type_RAW_SAMPLE.setDescription('Child of MASTER') +samp_type_RAW_SAMPLE.setListable(True) +samp_type_RAW_SAMPLE.setShowContainer(False) +samp_type_RAW_SAMPLE.setShowParents(True) +samp_type_RAW_SAMPLE.setSubcodeUnique(False) +samp_type_RAW_SAMPLE.setAutoGeneratedCode(True) +samp_type_RAW_SAMPLE.setShowParentMetadata(True) +samp_type_RAW_SAMPLE.setGeneratedCodePrefix('BSSE-QGF-RAW-') +samp_type_RAW_SAMPLE.setValidationScript(script_Has_Parents) + +print "Imported 6 Sample Types" +data_set_type_ALIGNMENT = tr.getOrCreateNewDataSetType('ALIGNMENT') +data_set_type_ALIGNMENT.setDescription('Aligner ouput, ideally bam/sam') +data_set_type_ALIGNMENT.setDataSetKind('PHYSICAL') +data_set_type_ALIGNMENT.setMainDataSetPattern(None) +data_set_type_ALIGNMENT.setMainDataSetPath(None) +data_set_type_ALIGNMENT.setDeletionDisallowed(False) + + +data_set_type_BASECALL_STATS = tr.getOrCreateNewDataSetType('BASECALL_STATS') +data_set_type_BASECALL_STATS.setDescription('Base Call Statistics from the Illumina Pipeline (configureBclToFastq.pl)') +data_set_type_BASECALL_STATS.setDataSetKind('PHYSICAL') +data_set_type_BASECALL_STATS.setMainDataSetPattern('original/.*/.*/Demultiplex_Stats.htm') +data_set_type_BASECALL_STATS.setMainDataSetPath(None) +data_set_type_BASECALL_STATS.setDeletionDisallowed(False) + + +data_set_type_BIGWIGGLE = tr.getOrCreateNewDataSetType('BIGWIGGLE') +data_set_type_BIGWIGGLE.setDescription('Visualization') +data_set_type_BIGWIGGLE.setDataSetKind('PHYSICAL') +data_set_type_BIGWIGGLE.setMainDataSetPattern(None) +data_set_type_BIGWIGGLE.setMainDataSetPath(None) +data_set_type_BIGWIGGLE.setDeletionDisallowed(False) + + +data_set_type_ELAND_ALIGNMENT = tr.getOrCreateNewDataSetType('ELAND_ALIGNMENT') +data_set_type_ELAND_ALIGNMENT.setDescription('Illumina Eland Alignment Output') +data_set_type_ELAND_ALIGNMENT.setDataSetKind('PHYSICAL') +data_set_type_ELAND_ALIGNMENT.setMainDataSetPattern(None) +data_set_type_ELAND_ALIGNMENT.setMainDataSetPath(None) +data_set_type_ELAND_ALIGNMENT.setDeletionDisallowed(False) + + +data_set_type_FASTQ_GZ = tr.getOrCreateNewDataSetType('FASTQ_GZ') +data_set_type_FASTQ_GZ.setDescription('Gzipped Fastq file produced by Casava 1.8+') +data_set_type_FASTQ_GZ.setDataSetKind('PHYSICAL') +data_set_type_FASTQ_GZ.setMainDataSetPattern(None) +data_set_type_FASTQ_GZ.setMainDataSetPath(None) +data_set_type_FASTQ_GZ.setDeletionDisallowed(False) + + +data_set_type_ILLUMINA_HISEQ_OUTPUT = tr.getOrCreateNewDataSetType('ILLUMINA_HISEQ_OUTPUT') +data_set_type_ILLUMINA_HISEQ_OUTPUT.setDescription('HiSeq2000 Output') +data_set_type_ILLUMINA_HISEQ_OUTPUT.setDataSetKind('PHYSICAL') +data_set_type_ILLUMINA_HISEQ_OUTPUT.setMainDataSetPattern(None) +data_set_type_ILLUMINA_HISEQ_OUTPUT.setMainDataSetPath(None) +data_set_type_ILLUMINA_HISEQ_OUTPUT.setDeletionDisallowed(False) + + +data_set_type_ILLUMINA_MISEQ_OUTPUT = tr.getOrCreateNewDataSetType('ILLUMINA_MISEQ_OUTPUT') +data_set_type_ILLUMINA_MISEQ_OUTPUT.setDescription('MiSeq Output') +data_set_type_ILLUMINA_MISEQ_OUTPUT.setDataSetKind('PHYSICAL') +data_set_type_ILLUMINA_MISEQ_OUTPUT.setMainDataSetPattern(None) +data_set_type_ILLUMINA_MISEQ_OUTPUT.setMainDataSetPath(None) +data_set_type_ILLUMINA_MISEQ_OUTPUT.setDeletionDisallowed(False) + + +data_set_type_MACS_OUTPUT = tr.getOrCreateNewDataSetType('MACS_OUTPUT') +data_set_type_MACS_OUTPUT.setDescription('MACS Peak Caller output') +data_set_type_MACS_OUTPUT.setDataSetKind('PHYSICAL') +data_set_type_MACS_OUTPUT.setMainDataSetPattern(None) +data_set_type_MACS_OUTPUT.setMainDataSetPath(None) +data_set_type_MACS_OUTPUT.setDeletionDisallowed(False) + + +data_set_type_QUALITY_JPGS = tr.getOrCreateNewDataSetType('QUALITY_JPGS') +data_set_type_QUALITY_JPGS.setDescription('R generated Quality plots') +data_set_type_QUALITY_JPGS.setDataSetKind('PHYSICAL') +data_set_type_QUALITY_JPGS.setMainDataSetPattern(None) +data_set_type_QUALITY_JPGS.setMainDataSetPath(None) +data_set_type_QUALITY_JPGS.setDeletionDisallowed(False) + + +data_set_type_QUALITY_PDFS = tr.getOrCreateNewDataSetType('QUALITY_PDFS') +data_set_type_QUALITY_PDFS.setDescription('R generated pdfs showing quality data') +data_set_type_QUALITY_PDFS.setDataSetKind('PHYSICAL') +data_set_type_QUALITY_PDFS.setMainDataSetPattern(None) +data_set_type_QUALITY_PDFS.setMainDataSetPath(None) +data_set_type_QUALITY_PDFS.setDeletionDisallowed(False) + + +data_set_type_QUALITY_SVG = tr.getOrCreateNewDataSetType('QUALITY_SVG') +data_set_type_QUALITY_SVG.setDescription('R generated Quality plots') +data_set_type_QUALITY_SVG.setDataSetKind('PHYSICAL') +data_set_type_QUALITY_SVG.setMainDataSetPattern(None) +data_set_type_QUALITY_SVG.setMainDataSetPath(None) +data_set_type_QUALITY_SVG.setDeletionDisallowed(False) + + +data_set_type_RUNINFO = tr.getOrCreateNewDataSetType('RUNINFO') +data_set_type_RUNINFO.setDescription('Run statstics: Status.html and Status_Files folder') +data_set_type_RUNINFO.setDataSetKind('PHYSICAL') +data_set_type_RUNINFO.setMainDataSetPattern('original/.*/Data/Status.htm') +data_set_type_RUNINFO.setMainDataSetPath(None) +data_set_type_RUNINFO.setDeletionDisallowed(False) + + +data_set_type_THUMBNAILS = tr.getOrCreateNewDataSetType('THUMBNAILS') +data_set_type_THUMBNAILS.setDescription('Thumbnails provided by the Illumina software') +data_set_type_THUMBNAILS.setDataSetKind('PHYSICAL') +data_set_type_THUMBNAILS.setMainDataSetPattern(None) +data_set_type_THUMBNAILS.setMainDataSetPath(None) +data_set_type_THUMBNAILS.setDeletionDisallowed(False) + + +data_set_type_TSV = tr.getOrCreateNewDataSetType('TSV') +data_set_type_TSV.setDescription('Tab separated files') +data_set_type_TSV.setDataSetKind('PHYSICAL') +data_set_type_TSV.setMainDataSetPattern(None) +data_set_type_TSV.setMainDataSetPath(None) +data_set_type_TSV.setDeletionDisallowed(False) + + +print "Imported 15 Data Set Types" +print "Imported 0 Material Types" +prop_type_AGILENT_KIT = tr.getOrCreateNewPropertyType('AGILENT_KIT', DataType.CONTROLLEDVOCABULARY) +prop_type_AGILENT_KIT.setLabel('Agilent Kit') +prop_type_AGILENT_KIT.setManagedInternally(False) +prop_type_AGILENT_KIT.setInternalNamespace(False) + +prop_type_AGILENT_KIT.setVocabulary(vocabulary_AGILENT_KIT) + +prop_type_ALIGNMENT_SOFTWARE = tr.getOrCreateNewPropertyType('ALIGNMENT_SOFTWARE', DataType.CONTROLLEDVOCABULARY) +prop_type_ALIGNMENT_SOFTWARE.setLabel('Alignment software') +prop_type_ALIGNMENT_SOFTWARE.setManagedInternally(False) +prop_type_ALIGNMENT_SOFTWARE.setInternalNamespace(False) + +prop_type_ALIGNMENT_SOFTWARE.setVocabulary(vocabulary_ALIGNMENT_SOFTWARE) + +prop_type_ANALYSIS_FINISHED = tr.getOrCreateNewPropertyType('ANALYSIS_FINISHED', DataType.TIMESTAMP) +prop_type_ANALYSIS_FINISHED.setLabel('Analysis finished') +prop_type_ANALYSIS_FINISHED.setManagedInternally(False) +prop_type_ANALYSIS_FINISHED.setInternalNamespace(False) + + +prop_type_BARCODE_COMPLEXITY_CHECKER = tr.getOrCreateNewPropertyType('BARCODE_COMPLEXITY_CHECKER', DataType.MULTILINE_VARCHAR) +prop_type_BARCODE_COMPLEXITY_CHECKER.setLabel('Barcode_Complexity_Checker') +prop_type_BARCODE_COMPLEXITY_CHECKER.setManagedInternally(False) +prop_type_BARCODE_COMPLEXITY_CHECKER.setInternalNamespace(False) + + +prop_type_BASESCOVERED = tr.getOrCreateNewPropertyType('BASESCOVERED', DataType.INTEGER) +prop_type_BASESCOVERED.setLabel('bases Covered') +prop_type_BASESCOVERED.setManagedInternally(False) +prop_type_BASESCOVERED.setInternalNamespace(False) + + +prop_type_BIOLOGICAL_SAMPLE_ARRIVED = tr.getOrCreateNewPropertyType('BIOLOGICAL_SAMPLE_ARRIVED', DataType.TIMESTAMP) +prop_type_BIOLOGICAL_SAMPLE_ARRIVED.setLabel('Arrival Date of Biological Sample') +prop_type_BIOLOGICAL_SAMPLE_ARRIVED.setManagedInternally(False) +prop_type_BIOLOGICAL_SAMPLE_ARRIVED.setInternalNamespace(False) + + +prop_type_CASAVA_VERSION = tr.getOrCreateNewPropertyType('CASAVA_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_CASAVA_VERSION.setLabel('Casava Version') +prop_type_CASAVA_VERSION.setManagedInternally(False) +prop_type_CASAVA_VERSION.setInternalNamespace(False) + +prop_type_CASAVA_VERSION.setVocabulary(vocabulary_CASAVA_VERSION) + +prop_type_CELL_PLASTICITY_SYSTEMSX = tr.getOrCreateNewPropertyType('CELL_PLASTICITY_SYSTEMSX', DataType.BOOLEAN) +prop_type_CELL_PLASTICITY_SYSTEMSX.setLabel('Cell Plasticity (SystemsX)') +prop_type_CELL_PLASTICITY_SYSTEMSX.setManagedInternally(False) +prop_type_CELL_PLASTICITY_SYSTEMSX.setInternalNamespace(False) + + +prop_type_CHROMCOUNT = tr.getOrCreateNewPropertyType('CHROMCOUNT', DataType.INTEGER) +prop_type_CHROMCOUNT.setLabel('chrom Count') +prop_type_CHROMCOUNT.setManagedInternally(False) +prop_type_CHROMCOUNT.setInternalNamespace(False) + + +prop_type_CLUSTER_GENERATION_KIT_VERSION = tr.getOrCreateNewPropertyType('CLUSTER_GENERATION_KIT_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_CLUSTER_GENERATION_KIT_VERSION.setLabel('CS Generation Kit Version') +prop_type_CLUSTER_GENERATION_KIT_VERSION.setManagedInternally(False) +prop_type_CLUSTER_GENERATION_KIT_VERSION.setInternalNamespace(False) + +prop_type_CLUSTER_GENERATION_KIT_VERSION.setVocabulary(vocabulary_CLUSTER_GENERATION_KIT_VERSION) + +prop_type_CLUSTER_STATION = tr.getOrCreateNewPropertyType('CLUSTER_STATION', DataType.CONTROLLEDVOCABULARY) +prop_type_CLUSTER_STATION.setLabel('Cluster Station') +prop_type_CLUSTER_STATION.setManagedInternally(False) +prop_type_CLUSTER_STATION.setInternalNamespace(False) + +prop_type_CLUSTER_STATION.setVocabulary(vocabulary_CLUSTER_STATION) + +prop_type_CONCENTRATION = tr.getOrCreateNewPropertyType('CONCENTRATION', DataType.REAL) +prop_type_CONCENTRATION.setLabel(u'Conc. [ng/\u03bcl]') +prop_type_CONCENTRATION.setManagedInternally(False) +prop_type_CONCENTRATION.setInternalNamespace(False) + + +prop_type_CONCENTRATION_FLOWLANE = tr.getOrCreateNewPropertyType('CONCENTRATION_FLOWLANE', DataType.REAL) +prop_type_CONCENTRATION_FLOWLANE.setLabel('Concentration in flow lane [pM]') +prop_type_CONCENTRATION_FLOWLANE.setManagedInternally(False) +prop_type_CONCENTRATION_FLOWLANE.setInternalNamespace(False) + + +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA = tr.getOrCreateNewPropertyType('CONCENTRATION_ORIGINAL_ILLUMINA', DataType.REAL) +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setLabel(u'Concentration (original) [ng/\u03bcl]') +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setManagedInternally(False) +prop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setInternalNamespace(False) + + +prop_type_CONCENTRATION_PREPARED_ILLUMINA = tr.getOrCreateNewPropertyType('CONCENTRATION_PREPARED_ILLUMINA', DataType.REAL) +prop_type_CONCENTRATION_PREPARED_ILLUMINA.setLabel(u'Concentration (prepared) [ng/\u03bcl]') +prop_type_CONCENTRATION_PREPARED_ILLUMINA.setManagedInternally(False) +prop_type_CONCENTRATION_PREPARED_ILLUMINA.setInternalNamespace(False) + + +prop_type_CONTACT_PERSON_EMAIL = tr.getOrCreateNewPropertyType('CONTACT_PERSON_EMAIL', DataType.VARCHAR) +prop_type_CONTACT_PERSON_EMAIL.setLabel('Email of Contact Person') +prop_type_CONTACT_PERSON_EMAIL.setManagedInternally(False) +prop_type_CONTACT_PERSON_EMAIL.setInternalNamespace(False) + + +prop_type_CONTACT_PERSON_NAME = tr.getOrCreateNewPropertyType('CONTACT_PERSON_NAME', DataType.VARCHAR) +prop_type_CONTACT_PERSON_NAME.setLabel('Name of Contact Person') +prop_type_CONTACT_PERSON_NAME.setManagedInternally(False) +prop_type_CONTACT_PERSON_NAME.setInternalNamespace(False) + + +prop_type_CONTROL_LANE = tr.getOrCreateNewPropertyType('CONTROL_LANE', DataType.CONTROLLEDVOCABULARY) +prop_type_CONTROL_LANE.setLabel('Control Lane') +prop_type_CONTROL_LANE.setManagedInternally(False) +prop_type_CONTROL_LANE.setInternalNamespace(False) + +prop_type_CONTROL_LANE.setVocabulary(vocabulary_CONTROL_LANE) + +prop_type_CREATED_ON_CS = tr.getOrCreateNewPropertyType('CREATED_ON_CS', DataType.TIMESTAMP) +prop_type_CREATED_ON_CS.setLabel('Clustering date') +prop_type_CREATED_ON_CS.setManagedInternally(False) +prop_type_CREATED_ON_CS.setInternalNamespace(False) + + +prop_type_CS_PROTOCOL_VERSION = tr.getOrCreateNewPropertyType('CS_PROTOCOL_VERSION', DataType.VARCHAR) +prop_type_CS_PROTOCOL_VERSION.setLabel('CS Protocol Version') +prop_type_CS_PROTOCOL_VERSION.setManagedInternally(False) +prop_type_CS_PROTOCOL_VERSION.setInternalNamespace(False) + + +prop_type_CYCLES = tr.getOrCreateNewPropertyType('CYCLES', DataType.INTEGER) +prop_type_CYCLES.setLabel('Cycles') +prop_type_CYCLES.setManagedInternally(False) +prop_type_CYCLES.setInternalNamespace(False) + + +prop_type_DATA_TRANSFERRED = tr.getOrCreateNewPropertyType('DATA_TRANSFERRED', DataType.TIMESTAMP) +prop_type_DATA_TRANSFERRED.setLabel('Data transferred') +prop_type_DATA_TRANSFERRED.setManagedInternally(False) +prop_type_DATA_TRANSFERRED.setInternalNamespace(False) + + +prop_type_DNA_CONCENTRATION_OF_LIBRARY = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_OF_LIBRARY', DataType.INTEGER) +prop_type_DNA_CONCENTRATION_OF_LIBRARY.setLabel('DNA concentration of library (nM)') +prop_type_DNA_CONCENTRATION_OF_LIBRARY.setManagedInternally(False) +prop_type_DNA_CONCENTRATION_OF_LIBRARY.setInternalNamespace(False) + + +prop_type_DNA_CONCENTRATION_POOL = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_POOL', DataType.REAL) +prop_type_DNA_CONCENTRATION_POOL.setLabel('DNA conc. [nM] - customer value') +prop_type_DNA_CONCENTRATION_POOL.setManagedInternally(False) +prop_type_DNA_CONCENTRATION_POOL.setInternalNamespace(False) + + +prop_type_DNA_CONCENTRATION_QGF = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_QGF', DataType.REAL) +prop_type_DNA_CONCENTRATION_QGF.setLabel('DNA concentration of Pool [nM]') +prop_type_DNA_CONCENTRATION_QGF.setManagedInternally(False) +prop_type_DNA_CONCENTRATION_QGF.setInternalNamespace(False) + + +prop_type_END_TYPE = tr.getOrCreateNewPropertyType('END_TYPE', DataType.CONTROLLEDVOCABULARY) +prop_type_END_TYPE.setLabel('Paired End / Single Read') +prop_type_END_TYPE.setManagedInternally(False) +prop_type_END_TYPE.setInternalNamespace(False) + +prop_type_END_TYPE.setVocabulary(vocabulary_END_TYPE) + +prop_type_EXPERIMENT_DESIGN = tr.getOrCreateNewPropertyType('EXPERIMENT_DESIGN', DataType.CONTROLLEDVOCABULARY) +prop_type_EXPERIMENT_DESIGN.setLabel('Experiment Design') +prop_type_EXPERIMENT_DESIGN.setManagedInternally(False) +prop_type_EXPERIMENT_DESIGN.setInternalNamespace(False) + +prop_type_EXPERIMENT_DESIGN.setVocabulary(vocabulary_EXPERIMENT_DESIGN) + +prop_type_EXTERNAL_SAMPLE_NAME = tr.getOrCreateNewPropertyType('EXTERNAL_SAMPLE_NAME', DataType.VARCHAR) +prop_type_EXTERNAL_SAMPLE_NAME.setLabel('External Sample Name') +prop_type_EXTERNAL_SAMPLE_NAME.setManagedInternally(False) +prop_type_EXTERNAL_SAMPLE_NAME.setInternalNamespace(False) + + +prop_type_FLOWCELLTYPE = tr.getOrCreateNewPropertyType('FLOWCELLTYPE', DataType.VARCHAR) +prop_type_FLOWCELLTYPE.setLabel('Flow Cell Type') +prop_type_FLOWCELLTYPE.setManagedInternally(False) +prop_type_FLOWCELLTYPE.setInternalNamespace(False) + + +prop_type_FLOW_CELL_SEQUENCED_ON = tr.getOrCreateNewPropertyType('FLOW_CELL_SEQUENCED_ON', DataType.TIMESTAMP) +prop_type_FLOW_CELL_SEQUENCED_ON.setLabel('Sequencing started') +prop_type_FLOW_CELL_SEQUENCED_ON.setManagedInternally(False) +prop_type_FLOW_CELL_SEQUENCED_ON.setInternalNamespace(False) + + +prop_type_FRAGMENT_SIZE_BASE_PAIRS = tr.getOrCreateNewPropertyType('FRAGMENT_SIZE_BASE_PAIRS', DataType.INTEGER) +prop_type_FRAGMENT_SIZE_BASE_PAIRS.setLabel('Fragment Size [base pairs]') +prop_type_FRAGMENT_SIZE_BASE_PAIRS.setManagedInternally(False) +prop_type_FRAGMENT_SIZE_BASE_PAIRS.setInternalNamespace(False) + + +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA = tr.getOrCreateNewPropertyType('FRAGMENT_SIZE_PREPARED_ILLUMINA', DataType.INTEGER) +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setLabel('Fragment Size (prepared) [base (pairs)]') +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setManagedInternally(False) +prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setInternalNamespace(False) + + +prop_type_ILLUMINA_PIPELINE_VERSION = tr.getOrCreateNewPropertyType('ILLUMINA_PIPELINE_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_ILLUMINA_PIPELINE_VERSION.setLabel('Pipeline Version') +prop_type_ILLUMINA_PIPELINE_VERSION.setManagedInternally(False) +prop_type_ILLUMINA_PIPELINE_VERSION.setInternalNamespace(False) + +prop_type_ILLUMINA_PIPELINE_VERSION.setVocabulary(vocabulary_PIPELINE_VERSION) + +prop_type_INDEX1 = tr.getOrCreateNewPropertyType('INDEX1', DataType.CONTROLLEDVOCABULARY) +prop_type_INDEX1.setLabel('Index 1') +prop_type_INDEX1.setManagedInternally(False) +prop_type_INDEX1.setInternalNamespace(False) + +prop_type_INDEX1.setVocabulary(vocabulary_INDEX1) + +prop_type_INDEX2 = tr.getOrCreateNewPropertyType('INDEX2', DataType.CONTROLLEDVOCABULARY) +prop_type_INDEX2.setLabel('Index 2') +prop_type_INDEX2.setManagedInternally(False) +prop_type_INDEX2.setInternalNamespace(False) + +prop_type_INDEX2.setVocabulary(vocabulary_INDEX2) + +prop_type_INDEXREAD = tr.getOrCreateNewPropertyType('INDEXREAD', DataType.INTEGER) +prop_type_INDEXREAD.setLabel('Length of Index Read1') +prop_type_INDEXREAD.setManagedInternally(False) +prop_type_INDEXREAD.setInternalNamespace(False) + + +prop_type_INDEXREAD2 = tr.getOrCreateNewPropertyType('INDEXREAD2', DataType.INTEGER) +prop_type_INDEXREAD2.setLabel('Length of Index Read2') +prop_type_INDEXREAD2.setManagedInternally(False) +prop_type_INDEXREAD2.setInternalNamespace(False) + + +prop_type_INVOICE = tr.getOrCreateNewPropertyType('INVOICE', DataType.BOOLEAN) +prop_type_INVOICE.setLabel('Invoice sent?') +prop_type_INVOICE.setManagedInternally(False) +prop_type_INVOICE.setInternalNamespace(False) + + +prop_type_ISCOMPRESSED = tr.getOrCreateNewPropertyType('ISCOMPRESSED', DataType.BOOLEAN) +prop_type_ISCOMPRESSED.setLabel('Is Compressed') +prop_type_ISCOMPRESSED.setManagedInternally(False) +prop_type_ISCOMPRESSED.setInternalNamespace(False) + + +prop_type_ISSUED_COMMAND = tr.getOrCreateNewPropertyType('ISSUED_COMMAND', DataType.MULTILINE_VARCHAR) +prop_type_ISSUED_COMMAND.setLabel('Issued Command') +prop_type_ISSUED_COMMAND.setManagedInternally(False) +prop_type_ISSUED_COMMAND.setInternalNamespace(False) + + +prop_type_ISSWAPPED = tr.getOrCreateNewPropertyType('ISSWAPPED', DataType.INTEGER) +prop_type_ISSWAPPED.setLabel('Is byte swapped') +prop_type_ISSWAPPED.setManagedInternally(False) +prop_type_ISSWAPPED.setInternalNamespace(False) + + +prop_type_KIT = tr.getOrCreateNewPropertyType('KIT', DataType.CONTROLLEDVOCABULARY) +prop_type_KIT.setLabel('Library preparation kit') +prop_type_KIT.setManagedInternally(False) +prop_type_KIT.setInternalNamespace(False) + +prop_type_KIT.setVocabulary(vocabulary_KIT) + +prop_type_KIT_PREPARED = tr.getOrCreateNewPropertyType('KIT_PREPARED', DataType.TIMESTAMP) +prop_type_KIT_PREPARED.setLabel('Sample processed') +prop_type_KIT_PREPARED.setManagedInternally(False) +prop_type_KIT_PREPARED.setInternalNamespace(False) + + +prop_type_LANECOUNT = tr.getOrCreateNewPropertyType('LANECOUNT', DataType.INTEGER) +prop_type_LANECOUNT.setLabel('Lane Count') +prop_type_LANECOUNT.setManagedInternally(False) +prop_type_LANECOUNT.setInternalNamespace(False) + + +prop_type_LIBRARY_PROCESSING_FAILED = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_FAILED', DataType.BOOLEAN) +prop_type_LIBRARY_PROCESSING_FAILED.setLabel('Library processing failed') +prop_type_LIBRARY_PROCESSING_FAILED.setManagedInternally(False) +prop_type_LIBRARY_PROCESSING_FAILED.setInternalNamespace(False) + + +prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_POSSIBLE_YES_NO', DataType.CONTROLLEDVOCABULARY) +prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setLabel('Library processing possible') +prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setManagedInternally(False) +prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setInternalNamespace(False) + +prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setVocabulary(vocabulary_YES_NO) + +prop_type_LIBRARY_PROCESSING_SUCCESSFUL = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_SUCCESSFUL', DataType.BOOLEAN) +prop_type_LIBRARY_PROCESSING_SUCCESSFUL.setLabel('Library processing successful') +prop_type_LIBRARY_PROCESSING_SUCCESSFUL.setManagedInternally(False) +prop_type_LIBRARY_PROCESSING_SUCCESSFUL.setInternalNamespace(False) + + +prop_type_LOT = tr.getOrCreateNewPropertyType('LOT', DataType.INTEGER) +prop_type_LOT.setLabel('Kit Lot #') +prop_type_LOT.setManagedInternally(False) +prop_type_LOT.setInternalNamespace(False) + + +prop_type_MACS_VERSION = tr.getOrCreateNewPropertyType('MACS_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_MACS_VERSION.setLabel('MACS VERSION') +prop_type_MACS_VERSION.setManagedInternally(False) +prop_type_MACS_VERSION.setInternalNamespace(False) + +prop_type_MACS_VERSION.setVocabulary(vocabulary_MACS_VERSION) + +prop_type_MAPPED_READS = tr.getOrCreateNewPropertyType('MAPPED_READS', DataType.INTEGER) +prop_type_MAPPED_READS.setLabel('Mapped reads') +prop_type_MAPPED_READS.setManagedInternally(False) +prop_type_MAPPED_READS.setInternalNamespace(False) + + +prop_type_MAX = tr.getOrCreateNewPropertyType('MAX', DataType.REAL) +prop_type_MAX.setLabel('Maximum') +prop_type_MAX.setManagedInternally(False) +prop_type_MAX.setInternalNamespace(False) + + +prop_type_MEAN = tr.getOrCreateNewPropertyType('MEAN', DataType.REAL) +prop_type_MEAN.setLabel('Mean') +prop_type_MEAN.setManagedInternally(False) +prop_type_MEAN.setInternalNamespace(False) + + +prop_type_MIN = tr.getOrCreateNewPropertyType('MIN', DataType.REAL) +prop_type_MIN.setLabel('Minimum') +prop_type_MIN.setManagedInternally(False) +prop_type_MIN.setInternalNamespace(False) + + +prop_type_MISMATCH_IN_INDEX = tr.getOrCreateNewPropertyType('MISMATCH_IN_INDEX', DataType.CONTROLLEDVOCABULARY) +prop_type_MISMATCH_IN_INDEX.setLabel('Mismatch in Index') +prop_type_MISMATCH_IN_INDEX.setManagedInternally(False) +prop_type_MISMATCH_IN_INDEX.setInternalNamespace(False) + +prop_type_MISMATCH_IN_INDEX.setVocabulary(vocabulary_MISMATCH_IN_INDEX) + +prop_type_NANO_DROP = tr.getOrCreateNewPropertyType('NANO_DROP', DataType.CONTROLLEDVOCABULARY) +prop_type_NANO_DROP.setLabel('Nano Drop') +prop_type_NANO_DROP.setManagedInternally(False) +prop_type_NANO_DROP.setInternalNamespace(False) + +prop_type_NANO_DROP.setVocabulary(vocabulary_NANO_DROP) + +prop_type_NCBI_ORGANISM_TAXONOMY = tr.getOrCreateNewPropertyType('NCBI_ORGANISM_TAXONOMY', DataType.CONTROLLEDVOCABULARY) +prop_type_NCBI_ORGANISM_TAXONOMY.setLabel('Organism (NCBI Taxonomy)') +prop_type_NCBI_ORGANISM_TAXONOMY.setManagedInternally(False) +prop_type_NCBI_ORGANISM_TAXONOMY.setInternalNamespace(False) + +prop_type_NCBI_ORGANISM_TAXONOMY.setVocabulary(vocabulary_NCBI_TAXONOMY) + +prop_type_NM_DNA = tr.getOrCreateNewPropertyType('NM_DNA', DataType.REAL) +prop_type_NM_DNA.setLabel('Calculated DNA concentration of library (nM)') +prop_type_NM_DNA.setManagedInternally(False) +prop_type_NM_DNA.setInternalNamespace(False) + + +prop_type_NOTES = tr.getOrCreateNewPropertyType('NOTES', DataType.MULTILINE_VARCHAR) +prop_type_NOTES.setLabel('Notes') +prop_type_NOTES.setManagedInternally(False) +prop_type_NOTES.setInternalNamespace(False) + + +prop_type_NUMBER_OF_ATTACHMENTS = tr.getOrCreateNewPropertyType('NUMBER_OF_ATTACHMENTS', DataType.INTEGER) +prop_type_NUMBER_OF_ATTACHMENTS.setLabel('Number of Attachments') +prop_type_NUMBER_OF_ATTACHMENTS.setManagedInternally(False) +prop_type_NUMBER_OF_ATTACHMENTS.setInternalNamespace(False) + + +prop_type_PAIRED_END_KIT = tr.getOrCreateNewPropertyType('PAIRED_END_KIT', DataType.VARCHAR) +prop_type_PAIRED_END_KIT.setLabel('Paired End Kit') +prop_type_PAIRED_END_KIT.setManagedInternally(False) +prop_type_PAIRED_END_KIT.setInternalNamespace(False) + + +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX = tr.getOrCreateNewPropertyType('PERCENTAGE_ONE_MISMATCH_READS_INDEX', DataType.REAL) +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setLabel('% One Mismatch Reads (Index)') +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setManagedInternally(False) +prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setInternalNamespace(False) + + +prop_type_PERCENTAGE_PASSED_FILTERING = tr.getOrCreateNewPropertyType('PERCENTAGE_PASSED_FILTERING', DataType.REAL) +prop_type_PERCENTAGE_PASSED_FILTERING.setLabel('% Passes Illumina Filtering (PF)') +prop_type_PERCENTAGE_PASSED_FILTERING.setManagedInternally(False) +prop_type_PERCENTAGE_PASSED_FILTERING.setInternalNamespace(False) + + +prop_type_PERCENTAGE_PERFECT_INDEX_READS = tr.getOrCreateNewPropertyType('PERCENTAGE_PERFECT_INDEX_READS', DataType.REAL) +prop_type_PERCENTAGE_PERFECT_INDEX_READS.setLabel('% Perfect Index Reads') +prop_type_PERCENTAGE_PERFECT_INDEX_READS.setManagedInternally(False) +prop_type_PERCENTAGE_PERFECT_INDEX_READS.setInternalNamespace(False) + + +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE = tr.getOrCreateNewPropertyType('PERCENTAGE_RAW_CLUSTERS_PER_LANE', DataType.REAL) +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setLabel('% of raw clusters per lane') +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setManagedInternally(False) +prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setInternalNamespace(False) + + +prop_type_PREPARED_BY = tr.getOrCreateNewPropertyType('PREPARED_BY', DataType.VARCHAR) +prop_type_PREPARED_BY.setLabel('Prepared by') +prop_type_PREPARED_BY.setManagedInternally(False) +prop_type_PREPARED_BY.setInternalNamespace(False) + + +prop_type_PRIMARYDATASIZE = tr.getOrCreateNewPropertyType('PRIMARYDATASIZE', DataType.INTEGER) +prop_type_PRIMARYDATASIZE.setLabel('primary Data Size') +prop_type_PRIMARYDATASIZE.setManagedInternally(False) +prop_type_PRIMARYDATASIZE.setInternalNamespace(False) + + +prop_type_PRIMARYINDEXSIZE = tr.getOrCreateNewPropertyType('PRIMARYINDEXSIZE', DataType.INTEGER) +prop_type_PRIMARYINDEXSIZE.setLabel('primary Index Size') +prop_type_PRIMARYINDEXSIZE.setManagedInternally(False) +prop_type_PRIMARYINDEXSIZE.setInternalNamespace(False) + + +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL = tr.getOrCreateNewPropertyType('PRINCIPAL_INVESTIGATOR_EMAIL', DataType.VARCHAR) +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setLabel('Email of Principal Investigator') +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setManagedInternally(False) +prop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setInternalNamespace(False) + + +prop_type_PRINCIPAL_INVESTIGATOR_NAME = tr.getOrCreateNewPropertyType('PRINCIPAL_INVESTIGATOR_NAME', DataType.VARCHAR) +prop_type_PRINCIPAL_INVESTIGATOR_NAME.setLabel('Name of Principal Investigator') +prop_type_PRINCIPAL_INVESTIGATOR_NAME.setManagedInternally(False) +prop_type_PRINCIPAL_INVESTIGATOR_NAME.setInternalNamespace(False) + + +prop_type_QC_AT_DBSSE = tr.getOrCreateNewPropertyType('QC_AT_DBSSE', DataType.CONTROLLEDVOCABULARY) +prop_type_QC_AT_DBSSE.setLabel('QC at D-BSSE') +prop_type_QC_AT_DBSSE.setManagedInternally(False) +prop_type_QC_AT_DBSSE.setInternalNamespace(False) + +prop_type_QC_AT_DBSSE.setVocabulary(vocabulary_YES_NO) + +prop_type_QC_REQUIRED = tr.getOrCreateNewPropertyType('QC_REQUIRED', DataType.CONTROLLEDVOCABULARY) +prop_type_QC_REQUIRED.setLabel('QC required') +prop_type_QC_REQUIRED.setManagedInternally(False) +prop_type_QC_REQUIRED.setInternalNamespace(False) + +prop_type_QC_REQUIRED.setVocabulary(vocabulary_YES_NO) + +prop_type_RUNNINGTIME = tr.getOrCreateNewPropertyType('RUNNINGTIME', DataType.VARCHAR) +prop_type_RUNNINGTIME.setLabel('Running Time') +prop_type_RUNNINGTIME.setManagedInternally(False) +prop_type_RUNNINGTIME.setInternalNamespace(False) + + +prop_type_RUN_FOLDER_NAME = tr.getOrCreateNewPropertyType('RUN_FOLDER_NAME', DataType.VARCHAR) +prop_type_RUN_FOLDER_NAME.setLabel('Run Folder Name') +prop_type_RUN_FOLDER_NAME.setManagedInternally(False) +prop_type_RUN_FOLDER_NAME.setInternalNamespace(False) + + +prop_type_SAMPLE_KIND = tr.getOrCreateNewPropertyType('SAMPLE_KIND', DataType.CONTROLLEDVOCABULARY) +prop_type_SAMPLE_KIND.setLabel('Sample Kind') +prop_type_SAMPLE_KIND.setManagedInternally(False) +prop_type_SAMPLE_KIND.setInternalNamespace(False) + +prop_type_SAMPLE_KIND.setVocabulary(vocabulary_SAMPLE_TYPE) + +prop_type_SAMTOOLS_FLAGSTAT = tr.getOrCreateNewPropertyType('SAMTOOLS_FLAGSTAT', DataType.MULTILINE_VARCHAR) +prop_type_SAMTOOLS_FLAGSTAT.setLabel('Samtools Flagstat Output') +prop_type_SAMTOOLS_FLAGSTAT.setManagedInternally(False) +prop_type_SAMTOOLS_FLAGSTAT.setInternalNamespace(False) + + +prop_type_SBS_KIT = tr.getOrCreateNewPropertyType('SBS_KIT', DataType.VARCHAR) +prop_type_SBS_KIT.setLabel('SBS Kit') +prop_type_SBS_KIT.setManagedInternally(False) +prop_type_SBS_KIT.setInternalNamespace(False) + + +prop_type_SBS_SEQUENCING_KIT_VERSION = tr.getOrCreateNewPropertyType('SBS_SEQUENCING_KIT_VERSION', DataType.CONTROLLEDVOCABULARY) +prop_type_SBS_SEQUENCING_KIT_VERSION.setLabel('SBS Sequencing Kit Version') +prop_type_SBS_SEQUENCING_KIT_VERSION.setManagedInternally(False) +prop_type_SBS_SEQUENCING_KIT_VERSION.setInternalNamespace(False) + +prop_type_SBS_SEQUENCING_KIT_VERSION.setVocabulary(vocabulary_SBS_SEQUENCING_KIT_VERSION) + +prop_type_SEQUENCER = tr.getOrCreateNewPropertyType('SEQUENCER', DataType.CONTROLLEDVOCABULARY) +prop_type_SEQUENCER.setLabel('Sequencer') +prop_type_SEQUENCER.setManagedInternally(False) +prop_type_SEQUENCER.setInternalNamespace(False) + +prop_type_SEQUENCER.setVocabulary(vocabulary_SEQUENCER) + +prop_type_SEQUENCER_FINISHED = tr.getOrCreateNewPropertyType('SEQUENCER_FINISHED', DataType.TIMESTAMP) +prop_type_SEQUENCER_FINISHED.setLabel('Sequencer finished') +prop_type_SEQUENCER_FINISHED.setManagedInternally(False) +prop_type_SEQUENCER_FINISHED.setInternalNamespace(False) + + +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG = tr.getOrCreateNewPropertyType('STARTING_AMOUNT_OF_SAMPLE_IN_NG', DataType.REAL) +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setLabel('Starting amount of sample (ng)') +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setManagedInternally(False) +prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setInternalNamespace(False) + + +prop_type_STD = tr.getOrCreateNewPropertyType('STD', DataType.REAL) +prop_type_STD.setLabel('Standard deviation') +prop_type_STD.setManagedInternally(False) +prop_type_STD.setInternalNamespace(False) + + +prop_type_SURFACECOUNT = tr.getOrCreateNewPropertyType('SURFACECOUNT', DataType.INTEGER) +prop_type_SURFACECOUNT.setLabel('Surface Count') +prop_type_SURFACECOUNT.setManagedInternally(False) +prop_type_SURFACECOUNT.setInternalNamespace(False) + + +prop_type_SWATHCOUNT = tr.getOrCreateNewPropertyType('SWATHCOUNT', DataType.INTEGER) +prop_type_SWATHCOUNT.setLabel('Swath Count') +prop_type_SWATHCOUNT.setManagedInternally(False) +prop_type_SWATHCOUNT.setInternalNamespace(False) + + +prop_type_TILECOUNT = tr.getOrCreateNewPropertyType('TILECOUNT', DataType.INTEGER) +prop_type_TILECOUNT.setLabel('Tile Count') +prop_type_TILECOUNT.setManagedInternally(False) +prop_type_TILECOUNT.setInternalNamespace(False) + + +prop_type_TOTAL_READS = tr.getOrCreateNewPropertyType('TOTAL_READS', DataType.INTEGER) +prop_type_TOTAL_READS.setLabel('Total reads') +prop_type_TOTAL_READS.setManagedInternally(False) +prop_type_TOTAL_READS.setInternalNamespace(False) + + +prop_type_UL_DNA = tr.getOrCreateNewPropertyType('UL_DNA', DataType.REAL) +prop_type_UL_DNA.setLabel('Calculated ul DNA for 2nM stock') +prop_type_UL_DNA.setManagedInternally(False) +prop_type_UL_DNA.setInternalNamespace(False) + + +prop_type_UL_EB = tr.getOrCreateNewPropertyType('UL_EB', DataType.REAL) +prop_type_UL_EB.setLabel('Calculated ul EB for 2nM stock ') +prop_type_UL_EB.setManagedInternally(False) +prop_type_UL_EB.setInternalNamespace(False) + + +prop_type_UL_STOCK = tr.getOrCreateNewPropertyType('UL_STOCK', DataType.INTEGER) +prop_type_UL_STOCK.setLabel('ul of 2nM stock') +prop_type_UL_STOCK.setManagedInternally(False) +prop_type_UL_STOCK.setInternalNamespace(False) + + +prop_type_UNIQUE_BARCODES = tr.getOrCreateNewPropertyType('UNIQUE_BARCODES', DataType.VARCHAR) +prop_type_UNIQUE_BARCODES.setLabel('Unique Barcodes in Pool?') +prop_type_UNIQUE_BARCODES.setManagedInternally(False) +prop_type_UNIQUE_BARCODES.setInternalNamespace(False) + + +prop_type_VERSION = tr.getOrCreateNewPropertyType('VERSION', DataType.VARCHAR) +prop_type_VERSION.setLabel('Version') +prop_type_VERSION.setManagedInternally(False) +prop_type_VERSION.setInternalNamespace(False) + + +prop_type_YIELD_MBASES = tr.getOrCreateNewPropertyType('YIELD_MBASES', DataType.INTEGER) +prop_type_YIELD_MBASES.setLabel('Yield(Mbases)') +prop_type_YIELD_MBASES.setManagedInternally(False) +prop_type_YIELD_MBASES.setInternalNamespace(False) + + +prop_type_ZOOMLEVELS = tr.getOrCreateNewPropertyType('ZOOMLEVELS', DataType.INTEGER) +prop_type_ZOOMLEVELS.setLabel('zoom Levels') +prop_type_ZOOMLEVELS.setManagedInternally(False) +prop_type_ZOOMLEVELS.setInternalNamespace(False) + + +print "Imported 92 Property Types" +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_ALIGNMENT_SOFTWARE) +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setSection(None) +assignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setPositionInForms(3) + +assignment_DATA_SET_ALIGNMENT_VERSION = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_VERSION) +assignment_DATA_SET_ALIGNMENT_VERSION.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_VERSION.setSection(None) +assignment_DATA_SET_ALIGNMENT_VERSION.setPositionInForms(4) + +assignment_DATA_SET_ALIGNMENT_NOTES = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_NOTES) +assignment_DATA_SET_ALIGNMENT_NOTES.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_NOTES.setSection(None) +assignment_DATA_SET_ALIGNMENT_NOTES.setPositionInForms(5) + +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_SAMTOOLS_FLAGSTAT) +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setSection(None) +assignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setPositionInForms(6) + +assignment_DATA_SET_ALIGNMENT_MAPPED_READS = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_MAPPED_READS) +assignment_DATA_SET_ALIGNMENT_MAPPED_READS.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_MAPPED_READS.setSection(None) +assignment_DATA_SET_ALIGNMENT_MAPPED_READS.setPositionInForms(7) + +assignment_DATA_SET_ALIGNMENT_TOTAL_READS = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_TOTAL_READS) +assignment_DATA_SET_ALIGNMENT_TOTAL_READS.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_TOTAL_READS.setSection(None) +assignment_DATA_SET_ALIGNMENT_TOTAL_READS.setPositionInForms(8) + +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_ISSUED_COMMAND) +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setMandatory(False) +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setSection(None) +assignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setPositionInForms(9) + +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX = tr.assignPropertyType(data_set_type_BASECALL_STATS, prop_type_MISMATCH_IN_INDEX) +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setMandatory(False) +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setSection(None) +assignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setPositionInForms(3) + +assignment_DATA_SET_BIGWIGGLE_NOTES = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_NOTES) +assignment_DATA_SET_BIGWIGGLE_NOTES.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_NOTES.setSection(None) +assignment_DATA_SET_BIGWIGGLE_NOTES.setPositionInForms(3) + +assignment_DATA_SET_BIGWIGGLE_VERSION = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_VERSION) +assignment_DATA_SET_BIGWIGGLE_VERSION.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_VERSION.setSection(None) +assignment_DATA_SET_BIGWIGGLE_VERSION.setPositionInForms(4) + +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ISCOMPRESSED) +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setSection(None) +assignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setPositionInForms(5) + +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ISSWAPPED) +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setSection(None) +assignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setPositionInForms(6) + +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_PRIMARYDATASIZE) +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setSection(None) +assignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setPositionInForms(7) + +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_PRIMARYINDEXSIZE) +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setSection(None) +assignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setPositionInForms(8) + +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ZOOMLEVELS) +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setSection(None) +assignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setPositionInForms(9) + +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_CHROMCOUNT) +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setSection(None) +assignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setPositionInForms(10) + +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_BASESCOVERED) +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setSection(None) +assignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setPositionInForms(11) + +assignment_DATA_SET_BIGWIGGLE_MEAN = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MEAN) +assignment_DATA_SET_BIGWIGGLE_MEAN.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_MEAN.setSection(None) +assignment_DATA_SET_BIGWIGGLE_MEAN.setPositionInForms(12) + +assignment_DATA_SET_BIGWIGGLE_MIN = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MIN) +assignment_DATA_SET_BIGWIGGLE_MIN.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_MIN.setSection(None) +assignment_DATA_SET_BIGWIGGLE_MIN.setPositionInForms(13) + +assignment_DATA_SET_BIGWIGGLE_MAX = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MAX) +assignment_DATA_SET_BIGWIGGLE_MAX.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_MAX.setSection(None) +assignment_DATA_SET_BIGWIGGLE_MAX.setPositionInForms(14) + +assignment_DATA_SET_BIGWIGGLE_STD = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_STD) +assignment_DATA_SET_BIGWIGGLE_STD.setMandatory(False) +assignment_DATA_SET_BIGWIGGLE_STD.setSection(None) +assignment_DATA_SET_BIGWIGGLE_STD.setPositionInForms(15) + +assignment_DATA_SET_FASTQ_GZ_NOTES = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_NOTES) +assignment_DATA_SET_FASTQ_GZ_NOTES.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_NOTES.setSection(None) +assignment_DATA_SET_FASTQ_GZ_NOTES.setPositionInForms(3) + +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_YIELD_MBASES) +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setSection(None) +assignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setPositionInForms(4) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_PASSED_FILTERING) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setPositionInForms(5) + +assignment_DATA_SET_FASTQ_GZ_INDEX1 = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_INDEX1) +assignment_DATA_SET_FASTQ_GZ_INDEX1.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_INDEX1.setSection(None) +assignment_DATA_SET_FASTQ_GZ_INDEX1.setPositionInForms(6) + +assignment_DATA_SET_FASTQ_GZ_INDEX2 = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_INDEX2) +assignment_DATA_SET_FASTQ_GZ_INDEX2.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_INDEX2.setSection(None) +assignment_DATA_SET_FASTQ_GZ_INDEX2.setPositionInForms(7) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setPositionInForms(8) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_PERFECT_INDEX_READS) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setPositionInForms(9) + +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setMandatory(False) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setSection(None) +assignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setPositionInForms(10) + +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN = tr.assignPropertyType(exp_type_HT_SEQUENCING, prop_type_EXPERIMENT_DESIGN) +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setMandatory(False) +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setSection(None) +assignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setPositionInForms(3) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_RUN_FOLDER_NAME) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME.setPositionInForms(1) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SEQUENCER) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setPositionInForms(5) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_END_TYPE) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setPositionInForms(7) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_FLOW_CELL_SEQUENCED_ON) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setPositionInForms(8) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SEQUENCER_FINISHED) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setPositionInForms(9) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_RUNNINGTIME) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setPositionInForms(10) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setScriptName('Diff_time') +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setDynamic(True) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setManaged(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setShownEdit(False) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_ILLUMINA_PIPELINE_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setPositionInForms(11) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CYCLES) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES.setPositionInForms(14) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_INDEXREAD) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setPositionInForms(17) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2 = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_INDEXREAD2) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setPositionInForms(18) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CONTROL_LANE) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setPositionInForms(19) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_FLOWCELLTYPE) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setPositionInForms(20) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_LANECOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setPositionInForms(21) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SURFACECOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setPositionInForms(22) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SWATHCOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setPositionInForms(23) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_TILECOUNT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setPositionInForms(24) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SBS_KIT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setPositionInForms(25) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_PAIRED_END_KIT) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setPositionInForms(26) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CLUSTER_STATION) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION.setSection('Clustering') +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION.setPositionInForms(27) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CREATED_ON_CS) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS.setSection('Clustering') +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS.setPositionInForms(28) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CS_PROTOCOL_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION.setSection('Clustering') +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION.setPositionInForms(29) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CLUSTER_GENERATION_KIT_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION.setSection('Clustering') +assignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION.setPositionInForms(30) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SBS_SEQUENCING_KIT_VERSION) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION.setPositionInForms(32) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_ANALYSIS_FINISHED) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setPositionInForms(34) + +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_NOTES) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setPositionInForms(35) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CONCENTRATION_FLOWLANE) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setPositionInForms(20) + +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_NOTES) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setMandatory(False) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setSection(None) +assignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setPositionInForms(23) + +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION = tr.assignPropertyType(data_set_type_ILLUMINA_HISEQ_OUTPUT, prop_type_CASAVA_VERSION) +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setMandatory(False) +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setSection(None) +assignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setPositionInForms(3) + +assignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_LIBRARY, prop_type_EXTERNAL_SAMPLE_NAME) +assignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME.setMandatory(False) +assignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME.setSection(None) +assignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME.setPositionInForms(1) + +assignment_SAMPLE_LIBRARY_KIT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_KIT) +assignment_SAMPLE_LIBRARY_KIT.setMandatory(False) +assignment_SAMPLE_LIBRARY_KIT.setSection(None) +assignment_SAMPLE_LIBRARY_KIT.setPositionInForms(2) + +assignment_SAMPLE_LIBRARY_PREPARED_BY = tr.assignPropertyType(samp_type_LIBRARY, prop_type_PREPARED_BY) +assignment_SAMPLE_LIBRARY_PREPARED_BY.setMandatory(False) +assignment_SAMPLE_LIBRARY_PREPARED_BY.setSection(None) +assignment_SAMPLE_LIBRARY_PREPARED_BY.setPositionInForms(3) + +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG = tr.assignPropertyType(samp_type_LIBRARY, prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG) +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setMandatory(False) +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setSection(None) +assignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setPositionInForms(4) + +assignment_SAMPLE_LIBRARY_INDEX1 = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INDEX1) +assignment_SAMPLE_LIBRARY_INDEX1.setMandatory(False) +assignment_SAMPLE_LIBRARY_INDEX1.setSection(None) +assignment_SAMPLE_LIBRARY_INDEX1.setPositionInForms(7) + +assignment_SAMPLE_LIBRARY_INDEX2 = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INDEX2) +assignment_SAMPLE_LIBRARY_INDEX2.setMandatory(False) +assignment_SAMPLE_LIBRARY_INDEX2.setSection(None) +assignment_SAMPLE_LIBRARY_INDEX2.setPositionInForms(8) + +assignment_SAMPLE_LIBRARY_LOT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LOT) +assignment_SAMPLE_LIBRARY_LOT.setMandatory(False) +assignment_SAMPLE_LIBRARY_LOT.setSection(None) +assignment_SAMPLE_LIBRARY_LOT.setPositionInForms(9) + +assignment_SAMPLE_LIBRARY_AGILENT_KIT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_AGILENT_KIT) +assignment_SAMPLE_LIBRARY_AGILENT_KIT.setMandatory(False) +assignment_SAMPLE_LIBRARY_AGILENT_KIT.setSection('QC Data') +assignment_SAMPLE_LIBRARY_AGILENT_KIT.setPositionInForms(10) + +assignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA = tr.assignPropertyType(samp_type_LIBRARY, prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA) +assignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA.setMandatory(False) +assignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA.setSection('QC Data') +assignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA.setPositionInForms(11) + +assignment_SAMPLE_LIBRARY_NANO_DROP = tr.assignPropertyType(samp_type_LIBRARY, prop_type_NANO_DROP) +assignment_SAMPLE_LIBRARY_NANO_DROP.setMandatory(False) +assignment_SAMPLE_LIBRARY_NANO_DROP.setSection('QC Data') +assignment_SAMPLE_LIBRARY_NANO_DROP.setPositionInForms(12) + +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA = tr.assignPropertyType(samp_type_LIBRARY, prop_type_CONCENTRATION_PREPARED_ILLUMINA) +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setMandatory(False) +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setSection('QC Data') +assignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setPositionInForms(13) + +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY = tr.assignPropertyType(samp_type_LIBRARY, prop_type_DNA_CONCENTRATION_OF_LIBRARY) +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setMandatory(False) +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setSection('QC Data') +assignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setPositionInForms(14) + +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LIBRARY_PROCESSING_SUCCESSFUL) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setMandatory(False) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setSection('QC Data') +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setPositionInForms(15) + +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LIBRARY_PROCESSING_FAILED) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED.setMandatory(False) +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED.setSection('QC Data') +assignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED.setPositionInForms(16) + +assignment_SAMPLE_LIBRARY_QC_AT_DBSSE = tr.assignPropertyType(samp_type_LIBRARY, prop_type_QC_AT_DBSSE) +assignment_SAMPLE_LIBRARY_QC_AT_DBSSE.setMandatory(False) +assignment_SAMPLE_LIBRARY_QC_AT_DBSSE.setSection('QC Data') +assignment_SAMPLE_LIBRARY_QC_AT_DBSSE.setPositionInForms(17) + +assignment_SAMPLE_LIBRARY_KIT_PREPARED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_KIT_PREPARED) +assignment_SAMPLE_LIBRARY_KIT_PREPARED.setMandatory(False) +assignment_SAMPLE_LIBRARY_KIT_PREPARED.setSection(None) +assignment_SAMPLE_LIBRARY_KIT_PREPARED.setPositionInForms(18) + +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_DATA_TRANSFERRED) +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setMandatory(False) +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setSection(None) +assignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setPositionInForms(19) + +assignment_SAMPLE_LIBRARY_INVOICE = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INVOICE) +assignment_SAMPLE_LIBRARY_INVOICE.setMandatory(False) +assignment_SAMPLE_LIBRARY_INVOICE.setSection(None) +assignment_SAMPLE_LIBRARY_INVOICE.setPositionInForms(20) + +assignment_SAMPLE_LIBRARY_NOTES = tr.assignPropertyType(samp_type_LIBRARY, prop_type_NOTES) +assignment_SAMPLE_LIBRARY_NOTES.setMandatory(False) +assignment_SAMPLE_LIBRARY_NOTES.setSection(None) +assignment_SAMPLE_LIBRARY_NOTES.setPositionInForms(33) + +assignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_EXTERNAL_SAMPLE_NAME) +assignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME.setSection(None) +assignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME.setPositionInForms(1) + +assignment_SAMPLE_LIBRARY_POOL_PREPARED_BY = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_PREPARED_BY) +assignment_SAMPLE_LIBRARY_POOL_PREPARED_BY.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_PREPARED_BY.setSection(None) +assignment_SAMPLE_LIBRARY_POOL_PREPARED_BY.setPositionInForms(2) + +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_DNA_CONCENTRATION_POOL) +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL.setSection(None) +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL.setPositionInForms(3) + +assignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_QC_REQUIRED) +assignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED.setSection(None) +assignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED.setPositionInForms(4) + +assignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_AGILENT_KIT) +assignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT.setSection('QC Data') +assignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT.setPositionInForms(5) + +assignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_FRAGMENT_SIZE_BASE_PAIRS) +assignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS.setSection('QC Data') +assignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS.setPositionInForms(6) + +assignment_SAMPLE_LIBRARY_POOL_NANO_DROP = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_NANO_DROP) +assignment_SAMPLE_LIBRARY_POOL_NANO_DROP.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_NANO_DROP.setSection('QC Data') +assignment_SAMPLE_LIBRARY_POOL_NANO_DROP.setPositionInForms(7) + +assignment_SAMPLE_LIBRARY_POOL_CONCENTRATION = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_CONCENTRATION) +assignment_SAMPLE_LIBRARY_POOL_CONCENTRATION.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_CONCENTRATION.setSection('QC Data') +assignment_SAMPLE_LIBRARY_POOL_CONCENTRATION.setPositionInForms(8) + +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_DNA_CONCENTRATION_QGF) +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF.setSection('QC Data') +assignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF.setPositionInForms(9) + +assignment_SAMPLE_LIBRARY_POOL_INVOICE = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_INVOICE) +assignment_SAMPLE_LIBRARY_POOL_INVOICE.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_INVOICE.setSection(None) +assignment_SAMPLE_LIBRARY_POOL_INVOICE.setPositionInForms(10) + +assignment_SAMPLE_LIBRARY_POOL_NOTES = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_NOTES) +assignment_SAMPLE_LIBRARY_POOL_NOTES.setMandatory(False) +assignment_SAMPLE_LIBRARY_POOL_NOTES.setSection(None) +assignment_SAMPLE_LIBRARY_POOL_NOTES.setPositionInForms(11) + +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION = tr.assignPropertyType(data_set_type_MACS_OUTPUT, prop_type_MACS_VERSION) +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setMandatory(False) +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setSection(None) +assignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setPositionInForms(3) + +assignment_DATA_SET_MACS_OUTPUT_NOTES = tr.assignPropertyType(data_set_type_MACS_OUTPUT, prop_type_NOTES) +assignment_DATA_SET_MACS_OUTPUT_NOTES.setMandatory(False) +assignment_DATA_SET_MACS_OUTPUT_NOTES.setSection(None) +assignment_DATA_SET_MACS_OUTPUT_NOTES.setPositionInForms(4) + +assignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_BIOLOGICAL_SAMPLE_ARRIVED) +assignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED.setPositionInForms(1) + +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_CONTACT_PERSON_EMAIL) +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL.setPositionInForms(2) + +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_CONTACT_PERSON_NAME) +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME.setPositionInForms(3) + +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_PRINCIPAL_INVESTIGATOR_EMAIL) +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL.setPositionInForms(4) + +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_PRINCIPAL_INVESTIGATOR_NAME) +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME.setPositionInForms(5) + +assignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_NCBI_ORGANISM_TAXONOMY) +assignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY.setPositionInForms(7) + +assignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_SAMPLE_KIND) +assignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND.setMandatory(True) +assignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND.setPositionInForms(21) + +assignment_SAMPLE_MASTER_SAMPLE_NOTES = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_NOTES) +assignment_SAMPLE_MASTER_SAMPLE_NOTES.setMandatory(False) +assignment_SAMPLE_MASTER_SAMPLE_NOTES.setSection(None) +assignment_SAMPLE_MASTER_SAMPLE_NOTES.setPositionInForms(22) + +assignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_EXTERNAL_SAMPLE_NAME) +assignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME.setMandatory(False) +assignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME.setSection(None) +assignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME.setPositionInForms(1) + +assignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_CONCENTRATION_ORIGINAL_ILLUMINA) +assignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA.setMandatory(False) +assignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA.setSection(None) +assignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA.setPositionInForms(4) + +assignment_SAMPLE_RAW_SAMPLE_PREPARED_BY = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_PREPARED_BY) +assignment_SAMPLE_RAW_SAMPLE_PREPARED_BY.setMandatory(False) +assignment_SAMPLE_RAW_SAMPLE_PREPARED_BY.setSection(None) +assignment_SAMPLE_RAW_SAMPLE_PREPARED_BY.setPositionInForms(8) + +assignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_KIT_PREPARED) +assignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED.setMandatory(False) +assignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED.setSection(None) +assignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED.setPositionInForms(9) + +assignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO) +assignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setMandatory(False) +assignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setSection(None) +assignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setPositionInForms(10) + +assignment_SAMPLE_RAW_SAMPLE_NOTES = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_NOTES) +assignment_SAMPLE_RAW_SAMPLE_NOTES.setMandatory(False) +assignment_SAMPLE_RAW_SAMPLE_NOTES.setSection(None) +assignment_SAMPLE_RAW_SAMPLE_NOTES.setPositionInForms(13) + +print "Imported 104 Property Assignments" +print "Imported 0 External DMSs" +print ("Import of Master Data finished.") \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/data-sources/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/data-sources/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py new file mode 100644 index 0000000000000000000000000000000000000000..c65531875bdf5a544198e755bf85afc40c1e7d87 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py @@ -0,0 +1,209 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Parses the two Illumina provided files 'runParameters.xml' and 'RunInfo.xml' +and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties +from those two XML files. Additionally the number of lanes are read out and +are created as contained samples of type 'ILLUMINA_FLOW_LANE'. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX + +structure: +110715_SN792_0054_BC035RACXX/ + runParameters.xml + RunInfo.xml + +The run folder created by the HiSeq sequencer is used to create a new +ILLUMINA_FLOW_CELL in openBIS. The properties are then set by parsing the +two XML files in this folder. + +@author: +Manuel Kohler +''' + +import os +import shutil +from time import * +from datetime import * +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +RUNPARAMETERS = 'runParameters.xml' +RUNINFO = 'RunInfo.xml' +FLOWCELL_SPACE='BSSE_FLOWCELLS' +FLOWCELL_PROJECT='FLOWCELLS' +EXPERIMENT_TYPE_CODE='HT_SEQUENCING' +FLOW_CELL='ILLUMINA_FLOW_CELL' +FLOW_LANE='ILLUMINA_FLOW_LANE' + +FLOWCELL_PROJECT_ID = "/%(FLOWCELL_SPACE)s/%(FLOWCELL_PROJECT)s" % vars() + +# Mapping between XML file naming and used in here +RUNPARAMETERS_XML = {'FLOWCELL':'Flowcell', 'RTAVERSION':'RTAVersion', + 'CONTROLLANE':'ControlLane', 'SBS':'Sbs', 'INDEX':'Index', + 'CYCLES':'Read1', 'PE':'Pe'} +RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount', + 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'} + +class parseXmlFile: + + def __init__(self, xmlFile): + self.xmlFile = xmlFile + self.tree = etree.parse(self.xmlFile) + self.root = self.tree.getroot() + + def getXmlElement (self, elementName): + ''' + Returns the text value of a given XML element + ''' + for e in self.root.getchildren(): + element = e.find(elementName) + if element is None: + return 'None' + else: + return element.text + + def getAllchildren (self, elementName): + ''' + finds all children of a given XML Element and returns them as list + ''' + for e in self.root.getchildren(): + # the '//' means look recursively for all children not only direct ones + childList = self.tree.findall('//' + elementName) + return childList + +# ----------------------------------------------------------------------------- + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +# ----------------------------------------------------------------------------- + +def registerFlowLane(transaction, a_lane, flowCellName, newFlowCell): + ''' + Registers a new Flow lane + ''' + newFlowLane = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + flowCellName + + ':' + str(a_lane), FLOW_LANE) + newFlowLane.setContainer(newFlowCell) + +# ----------------------------------------------------------------------------- + +def extractFlowCellName (runFolderName): + return runFolderName.split('_')[-1][1:] + +# ----------------------------------------------------------------------------- + +def searchFlowCell (transaction, flowCellName): + ''' + Search for the sample and check if there is already sample with this name + ''' + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch( \ + SearchCriteria.MatchClauseAttribute.CODE, flowCellName)); + foundSamples = search_service.searchForSamples(sc) + if foundSamples.size() > 0: + raise NameError('Already found a flow cell with the following name: '+ flowCellName) + return foundSamples + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incoming = transaction.getIncoming() + incomingPath = incoming.getAbsolutePath() + + runFolderName = incoming.getName() + flowCellName = runFolderName.split('_')[-1][1:] + + searchFlowCell (transaction, flowCellName) + + # Parse the RunInfo.xml file + runInfo = parseXmlFile(incomingPath + '/' + RUNINFO) + + # Create a new Flow Cell and set the experiment + project = transaction.getProject(FLOWCELL_PROJECT_ID) + if project == None: + space = transaction.getSpace(FLOWCELL_SPACE) + if space == None: + space = transaction.createNewSpace(FLOWCELL_SPACE, None) + project = transaction.createNewProject(FLOWCELL_PROJECT_ID) + expID = FLOWCELL_PROJECT_ID + '/' + datetime.now().strftime("%Y.%m") + exp = transaction.getExperiment(expID) + if exp == None: + exp = transaction.createNewExperiment(expID, EXPERIMENT_TYPE_CODE) + newFlowCell = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + flowCellName, FLOW_CELL) + newFlowCell.setExperiment(exp) + + run = runInfo.getAllchildren('Run')[0].attrib + if (extractFlowCellName(run['Id']) != flowCellName): + raise NameError('Flowcell names do not match between directory name '+ flowCellName + + ' and ' + RUNINFO + 'property file: ' + extractFlowCellName(run['Id'])) + + + # The HiSeq is providing more infos in the runParameters.xml, which we will parse here: + runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS) + + newFlowCell.setPropertyValue("RUN_FOLDER_NAME", runFolderName) + newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", runParameters.getXmlElement(RUNPARAMETERS_XML['RTAVERSION'])) + newFlowCell.setPropertyValue("FLOWCELLTYPE", runParameters.getXmlElement(RUNPARAMETERS_XML['FLOWCELL'])) + newFlowCell.setPropertyValue("CONTROL_LANE", runParameters.getXmlElement(RUNPARAMETERS_XML['CONTROLLANE'])) + newFlowCell.setPropertyValue("SBS_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['SBS'])) + + read1 = runParameters.getAllchildren('Read1') + newFlowCell.setPropertyValue("CYCLES", read1[0].text) + + read2 = runParameters.getAllchildren('Read2') + if (str(read2[0].text) == '0'): + newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ") + else: + newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END") + newFlowCell.setPropertyValue("PAIRED_END_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['PE'])) + + indexRead1 = runParameters.getAllchildren('IndexRead1') + newFlowCell.setPropertyValue("INDEXREAD", indexRead1[0].text) + + indexRead2 = runParameters.getAllchildren('IndexRead2') + newFlowCell.setPropertyValue("INDEXREAD2", indexRead2[0].text) + + def setFcProperty(searchId, dict): + children = runInfo.getAllchildren(searchId) + for element in (dict): + if (element <> '') and (dict[element] <> ''): + newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]]) + + setFcProperty('FlowcellLayout', RUNINFO_XML) + + sequencer = runInfo.getAllchildren('Instrument') + newFlowCell.setPropertyValue("SEQUENCER", sequencer[0].text) + + newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", create_openbis_timestamp()) + try: + maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']] + except: + maxLanes = len(runInfo.getAllchildren('Tiles')[0]) + + [registerFlowLane(transaction, lane, flowCellName, newFlowCell) for lane in range(1,int(maxLanes)+1)] diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/create-flowcell-hiseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/create-flowcell-hiseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..5c56666b206b67339b5155b80f2d5812c1ac34b0 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/create-flowcell-hiseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for creating a flow cell based on runParameters.xml and RunInfo.xml created by an +# Illumina HiSeq +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/create-flowcell-hiseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = create-flowcell-hiseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/read-rta-timestamp/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/read-rta-timestamp/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ef56111b768f0d12631d249469e5c942506f01f0 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/read-rta-timestamp/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/read-rta-timestamp +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = read-rta-timestamp.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py new file mode 100644 index 0000000000000000000000000000000000000000..2b1687925ade626de3ed19d892ffc37c44d16e1b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py @@ -0,0 +1,76 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Reads out the time stamp of the file 'RTAComplete.txt' and sets the +property for a finished sequencer called 'SEQUENCER_FINISHED' to the +time stamp of this file. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX + +structure: +110715_SN792_0054_BC035RACXX/ + RTAComplete.txt + +@author: +Manuel Kohler +''' + +import os +import shutil +from time import * +from datetime import * +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +MarkerHiSeqComplete = 'RTAComplete.txt' + +def createOpenbisTimeStamp(file): + ''' + Creates a openBIS compatible time stamp of a file time stamp + ''' + mtime = os.path.getmtime(file) + lt = localtime(mtime) + tz = localtime().tm_hour - gmtime().tm_hour + return (strftime("%Y-%m-%d %H:%M:%S GMT" + "%+.2d" % tz + ":00", lt)) + +# ----------------------------------------------------------------------------- + +def extractFlowCellName (runFolderName): + return runFolderName.split('_')[-1][1:] + +# ----------------------------------------------------------------------------- + +def process(transaction): + + incomingPath = transaction.getIncoming().getAbsolutePath() + # Get the incoming name + runFolderName = transaction.getIncoming().getName() + flowCellName = extractFlowCellName(runFolderName) + + Markerfile = incomingPath + "/" + MarkerHiSeqComplete + + # Search for the sample and check if there is already sample with this name + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellName)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + sa = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier()) + sa.setPropertyValue("SEQUENCER_FINISHED", createOpenbisTimeStamp(Markerfile)) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-basecall-stats/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-basecall-stats/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..d6e67945db5bcce4a1f3f1fa0c109a5d12b2544a --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-basecall-stats/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-basecall-stats +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-basecall-stats.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py new file mode 100644 index 0000000000000000000000000000000000000000..4c47f6a072d2579c03c3def90d8d93a036673c5e --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py @@ -0,0 +1,62 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a 'BASECALL_STATS' data set in openBIS. +The name of the directory is used to search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: C035RACXX_1 +expected incoming Name for MiSeq runs: A0T19_1 + +@author: +Manuel Kohler +''' + +import os +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +# ----------------------------------------------------------------------------- + +def extractFlowCellName (runFolderName): + flowCell, flowLane = runFolderName.split('_') + return flowCell, flowLane + +# ----------------------------------------------------------------------------- + +def process(transaction): + + runFolderName = transaction.getIncoming().getName() + incomingPath = transaction.getIncoming().getPath() + flowCellName, flowLaneName = extractFlowCellName(runFolderName) + + # Create a data set and set type + dataSet = transaction.createNewDataSet("BASECALL_STATS") + dataSet.setMeasuredData(False) + + dataSet.setPropertyValue("MISMATCH_IN_INDEX", "NONE") + + search_service = transaction.getSearchService() + transaction.moveFile(incomingPath, dataSet) + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellName + ':' + flowLaneName)) + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + dataSet.setSample(foundSamples[0]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-flowcell/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-flowcell/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..697c1d5d3cbdc3435f5f06d4dad207e13245d19d --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-flowcell/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-flowcell-hiseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-flowcell-hiseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-flowcell/register-flowcell-hiseq.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-flowcell/register-flowcell-hiseq.py new file mode 100644 index 0000000000000000000000000000000000000000..4b2251d72bc09343a150d9909b4d9cb8a78facae --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-flowcell/register-flowcell-hiseq.py @@ -0,0 +1,138 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of the directory is used to +search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX +expected incoming Name for GAII runs: 110812_6353WAAXX + +@author: +Manuel Kohler +''' + +import os +import shutil +import glob +import xml.etree.ElementTree as etree +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +REGEX_RUNINFO_SAMPLE = '/Data/Status*' +REGEX_RUNINFO_REPORTS = '/Data/reports' +MARKER_STRING = '.MARKER_is_finished_' +RUNSTATISTICS_DROPBOX = 'register-runstatistics' + +# ----------------------------------------------------------------------------- + +def extractRunData (runFolderName, transaction): + ''' + Splits the incoming folder name and extracts infos out of it + HiSeq example: + ['130227', 'SN792', '0211', 'BC1RPGACXX'] + MiSeq example: + ['130227', 'M00721', '0036', '000000000-A3BAV'] + ''' + runDataDict = {} + date, sequencerID, runningNumber, flowCellId = runFolderName.split('_') + runDataDict['date'] = date + runDataDict['sequencerID'] = sequencerID + runDataDict['runningNumber'] = runningNumber + + if not sequencerID.startswith('M'): + runDataDict['compartment'] = flowCellId[0] + runDataDict['flowCellId'] = flowCellId[1:] + dataSet = transaction.createNewDataSet("ILLUMINA_HISEQ_OUTPUT") + else: + runDataDict['flowCellId'] = flowCellId + dataSet = transaction.createNewDataSet("ILLUMINA_MISEQ_OUTPUT") + return runDataDict, dataSet + +# ----------------------------------------------------------------------------- + +def touch_markerfile(filename): + try: + # do a touch + open(filename, 'w').close() + except: + print('Could not touch ' + filename) + +# ----------------------------------------------------------------------------- + +def moveFiles(incomingPath, runDataDict, runStatisticsFolder): + #move RunInfo into a different drop box + runInfoSample=glob.glob(incomingPath + REGEX_RUNINFO_SAMPLE) + runInfoReport=glob.glob(incomingPath + REGEX_RUNINFO_REPORTS) + runInfoList = runInfoSample + runInfoReport + + newPath = runStatisticsFolder + '/' + runDataDict['flowCellId'] + '/Data/' + + os.makedirs(newPath) + for runInfo in runInfoList: + try: + if os.path.isdir(runInfo): + shutil.copytree(runInfo, newPath + os.path.basename(runInfo)) + else: + shutil.copy2(runInfo, newPath) + except (IOError, os.error), why: + print (runInfo, newPath, str(why)) + +# ----------------------------------------------------------------------------- + +def getThreadProperties(transaction): + + threadPropertyDict = {} + threadProperties = transaction.getGlobalState().getThreadParameters().getThreadProperties() + + for key in threadProperties: + try: + threadPropertyDict[key] = threadProperties.getProperty(key) + except: + pass + return threadPropertyDict + +# ----------------------------------------------------------------------------- + +def process(transaction): + + threadPropertyDict = getThreadProperties(transaction) + + incomingPath = transaction.getIncoming().getPath() + runFolderName = transaction.getIncoming().getName() + runDataDict, dataSet = extractRunData(runFolderName, transaction) + + incomingRootDir = threadPropertyDict[u'incoming-root-dir'] + runStatisticsFolder = incomingRootDir + '/' + RUNSTATISTICS_DROPBOX + + moveFiles(incomingPath, runDataDict, runStatisticsFolder) + + touch_markerfile( runStatisticsFolder + '/' + MARKER_STRING + runDataDict['flowCellId']) + + dataSet.setMeasuredData(False) + + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch( \ + SearchCriteria.MatchClauseAttribute.CODE, runDataDict['flowCellId'])); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + # Add the incoming file into the data set + transaction.moveFile(incomingPath, dataSet) + dataSet.setSample(foundSamples[0]) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-lane-hiseq/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-lane-hiseq/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..f7523f7cdec8ed261c78152f3007f7bb9947f79b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-lane-hiseq/plugin.properties @@ -0,0 +1,12 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-lane-hiseq +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-lane-hiseq.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor + diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py new file mode 100644 index 0000000000000000000000000000000000000000..848fd08ad3bed11ae5a43fd5919053697dca25f5 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py @@ -0,0 +1,223 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Processes each flow lane of a Sequencing run and attaches the fastq files to +the correct corresponding library samples + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt +Expects as incoming folder: +Project_<Flow Cell>_<Lane> +e.g.Project_110715_SN792_0054_BC035RACXX_1 + + +@author: +Manuel Kohler + +Note: +print statements go to: ~openbis/sprint/datastore_server/log/startup_log.txt +''' + +import os +import fnmatch +import time +import shutil +from time import * +from datetime import * +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria + +FASTQ_GZ_PATTERN = "*.fastq.gz" +METADATA_FILE_SUFFIX = "_metadata.tsv" +INDEX1='INDEX1' +INDEX2='INDEX2' +EXTERNAL_SAMPLE_NAME='EXTERNAL_SAMPLE_NAME' + +DEFAULT_INDEX='NoIndex' + +# ------------------------------------------------------------------------------- + +def getFileNames(path): + ''' + Gets all files matching a PATTERN in a path recursively + and returns the result as a list + ''' + matches = [] + for root, dirnames, filenames in os.walk(path): + for filename in fnmatch.filter(filenames, FASTQ_GZ_PATTERN): + matches.append(os.path.join(root, filename)) + matches.sort() + return(matches) + +# ------------------------------------------------------------------------------- + +def writeMetadataFile (fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList): + ''' + Writes a file of meta date related to one sample + ''' + try: + metaDataFile = open(fileName,'w') + for propertyType in parentPropertyTypes: + metaDataFile.write(propertyType.encode('utf-8') + "\t" + + parentPropertiesMap[propertyType].tryGetAsString().encode('utf-8') + "\n") + + metaDataFile.write("\nFLOWCELL PROPERTIES\n".encode('utf-8')) + + for fcMetaData in fcMetaDataList: + metaDataFile.write(fcMetaData.encode('utf-8') + "\t" + + fcMetaDataDict[fcMetaData].tryGetAsString().encode('utf-8') + "\n") + pass + except IOError: + print ('File error, could not write '+ fileName) + finally: + metaDataFile.close() + +# ------------------------------------------------------------------------------- + +def create_openbis_timestamp (): + ''' + Create an openBIS conform timestamp + ''' + tz=localtime()[3]-gmtime()[3] + d=datetime.now() + return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00") + +# ------------------------------------------------------------------------------- + +def getFlowCellMetaData (transaction, flowCellId): + + def sortedDictValues(adict): + keys = adict.keys() + keys.sort() + return map(adict.get, keys) + + search = transaction.getSearchService() + sc = SearchCriteria() + print('Searching FlowCell: '+ str(flowCellId)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId)); + foundFlowCells = search.searchForSamples(sc) + + try: + assert foundFlowCells.size() == 1 + except AssertionError: + print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId) + + fcPropertiesDict = {} + fcPropertyTypes = [] + + fcProperties = foundFlowCells[0].getSample().getProperties() + for property in fcProperties: + code = property.getPropertyType().getSimpleCode() + fcPropertyTypes.append(code) + fcPropertiesDict[code] = property + + fcPropertyTypes.sort() + return fcPropertiesDict, fcPropertyTypes + +# ------------------------------------------------------------------------------- + +def searchSample(search_service, sampleCode): + + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sampleCode)); + foundSamples = search_service.searchForSamples(sc) + + # there should be only one sample because it is unique + if (len(foundSamples) > 1): + raise Exception("More than one sample found! No unique code: " + sampleCode) + elif (len(foundSamples) == 0): + raise Exception("No matching sample found for: " + sampleCode) + else : + sample = foundSamples[0] + return sample + +# ------------------------------------------------------------------------------- +def process(transaction): + + # useful for debugging: + print ("\n") + print(datetime.now()) + + search_service = transaction.getSearchService() + + incomingPath = transaction.getIncoming().getAbsolutePath() + name = transaction.getIncoming().getName() + + folders=[] + folders=os.listdir(incomingPath) + + # expected incoming Name, e.g.: Project_110715_SN792_0054_BC035RACXX_1 + split=name.split("_") + if (len(split) == 6): + runningDate = split[1] + sequencerId = split[2] + sequentialNumber = split[3] + hiseqTray = split[4][0] + flowCellId = split[4][1:] + flowLane = split[-1] + incoming_sample = flowCellId + ':' + flowLane + # expected Project_120112_63537AAXX_1 + if (len(split) == 4): + runningDate = split[1] + flowCellId = split[2] + flowLane = split[-1] + incoming_sample = flowCellId + ':' + flowLane + + # Search for the incoming_sample which is a Flow Lane + sc = SearchCriteria() + print('Processing sample: '+ str(incoming_sample)) + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample)); + foundSamples = search_service.searchForSamples(sc) + + # there should be only one sample because it is unique within one Flow Cell + if (len(foundSamples) > 1): + raise Exception("More than one sample found! No unique code: " + incoming_sample) + elif (len(foundSamples) == 0): + raise Exception("No matching sample found for: " + incoming_sample) + else : + sample = foundSamples[0].getSample() + parents = sample.getParents() + + # ------------------------------------------------------------------------------- + + # loop over each Sample folder within a lane + for f in range(0,len(folders)): + # Create a data set and set type + dataSet = transaction.createNewDataSet("FASTQ_GZ") + dataSet.setMeasuredData(False) + dataSet.setPropertyValue(INDEX1, DEFAULT_INDEX) + dataSet.setPropertyValue(INDEX2, DEFAULT_INDEX) + dirName = transaction.createNewDirectory(dataSet,folders[f]) + + # if multiplexed samples then there is more than one folder + pathPerLane = incomingPath + '/' + folders[f] + + # get all fastqs in this dataSet + fastqFileList=getFileNames(pathPerLane) + + # put the files into the dataSet + for file in fastqFileList: + sampleCode = '-'.join(file.split('/')[-1].split('_')[:4]) + print "Searching for " + sampleCode + sample = searchSample(search_service, sampleCode) + + # finally add the files to the data set + transaction.moveFile(file , dataSet, folders[f]) + + #sa = transaction.getSampleForUpdate(sample.getSampleIdentifier()) + #sa.setPropertyValue("DATA_TRANSFERRED", create_openbis_timestamp()) + dataSet.setSample(sample) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-runstatistics/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-runstatistics/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..8572688f22411a37ed1f5632e4410ad5944c439b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-runstatistics/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-runstatistics +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-runstatistics.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-runstatistics/register-runstatistics.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-runstatistics/register-runstatistics.py new file mode 100644 index 0000000000000000000000000000000000000000..c3fc98d03a4a234fc0997fe9d8a85caf8fe5c29b --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-runstatistics/register-runstatistics.py @@ -0,0 +1,57 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Registers an incoming directory as a data set in openBIS. The name of +the directory is used to search for the matching sample. + +@note: +print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt + +@author: +Manuel Kohler +''' + +import os +import shutil +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +def process(transaction): + + incomingPath = transaction.getIncoming().getPath() + incomingFolder = transaction.getIncoming().getName() + + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incomingFolder)); + foundSamples = search_service.searchForSamples(sc) + + if foundSamples.size() > 0: + + # Search for another data set of the same sample and make it a child of it + sampleSc = SearchCriteria() + sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc)) + foundContainedSamples = search_service.searchForSamples(sampleSc) + if foundContainedSamples.size() > 0: + for fcs in range(0,foundContainedSamples.size()): + dataSet = transaction.createNewDataSet("RUNINFO") + dataSet.setMeasuredData(False) + dataSet.setSample(foundContainedSamples[fcs]) + # Add the incoming file into the data set + shutil.copytree(incomingPath, incomingPath + "_" + str(fcs+1)) + transaction.moveFile(incomingPath + "_" + str(fcs+1), dataSet) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-unaligned/plugin.properties b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-unaligned/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9c8c317b60db9215ca0b0c60a150018e92930dc1 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-unaligned/plugin.properties @@ -0,0 +1,11 @@ +# +# Drop box for registering a flow cell output as a data set +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/register-unaligned +incoming-data-completeness-condition = marker-file +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = register-unaligned.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-unaligned/register-unaligned.py b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-unaligned/register-unaligned.py new file mode 100644 index 0000000000000000000000000000000000000000..d9e6b77c95fb1add298ae2000683f9d6c3df97e5 --- /dev/null +++ b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/drop-boxes/register-unaligned/register-unaligned.py @@ -0,0 +1,185 @@ +''' +@copyright: +2013 ETH Zuerich, CISD + +@license: +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. + +@description: +Splits up this complex data set into two different data sets and +moves the corresponding file into those drop boxes + +@note: +Expects as incoming folder: <FlowCell>/Unaligned_no_mismatch + +@author: +Manuel Kohler +''' + +import os +import glob +import shutil +import time +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria + +BASECALL_STATS_FOLDER = 'Basecall_Stats_' +REGEX_FILES = '*.*' +REGEX_MAKEFILE = 'Make*' +REGEX_LANES='/P*' +REGEX_UNDETERMINED = '/U*/Sample*' +UNALIGNED_FOLDER='Unaligned_' +LANE_DROPBOX='register-lane-hiseq' +BASECALL_DROPBOX='register-basecall-stats' +MARKER_STRING='.MARKER_is_finished_' + +# ----------------------------------------------------------------------------- + +def touch_markerfile(filename): + try: + # do a touch + open(filename, 'w').close() + except: + print('Could not touch ' + filename) + +# ----------------------------------------------------------------------------- + +def searchForLaneParents(transaction, sampleCode): + + search_service = transaction.getSearchService() + sc = SearchCriteria() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sampleCode)) + foundSamples = search_service.searchForSamples(sc) + # there should be only one sample because it is unique within one Flow Cell + if (len(foundSamples) > 1): + raise Exception("More than one sample found! No unique code: " + sampleCode) + elif (len(foundSamples) == 0): + raise Exception("No matching sample found for: " + sampleCode) + else : + sample = foundSamples[0].getSample() + parents = sample.getParents() + + # search for the parents + sc = SearchCriteria() + # set the Search Criteria to an OR condition, default is AND + sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES) + # Get the codes for all parents + for parent in parents: + parentSubCode = parent.getSubCode() + sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode)); + # all parents of the flow lane + foundParents = search_service.searchForSamples(sc) + + parentCodeList = [] + + for foundParent in foundParents: + parent = foundParent.getSample() + # ArrayList + parentProperties = parent.getProperties() + # just get the current code + parentCode = parent.getCode() + parentCodeList.append(parentCode) + #print("Found parent code: "+ parentCode) + + return parentCodeList + +# ----------------------------------------------------------------------------- + +def renameFiles(transaction, dir, flowcellName): + # Limit of Samples when the Sample Code is still used in the renaming. If Number of Samples is + # bigger than this number, we just write the number in the file name. + + MAX_SAMPLES = 20 + FACILITY_CODE = "BSSE_QGF_" + + for root, dirs, files in os.walk(dir): + for file in files: + lane = file.split("_")[0][-1] + if lane.isdigit(): + sampleCode = flowcellName + ":" + lane + print sampleCode + parentCodeList = searchForLaneParents(transaction, sampleCode) + print parentCodeList + length = len(parentCodeList) + if length > MAX_SAMPLES: + # BSSE_QGF_96_samples_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz + os.rename(root + '/' + file, root + "/" + FACILITY_CODE + str(length) + "_samples_" + flowcellName + "_" + file) + else: + # BSSE_QGF_10001_10002_10003_10004_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz + SampleCodeString = "_".join([(e.split("-")[-1]) for e in parentCodeList]) + os.rename(root + '/' + file, root + "/" + FACILITY_CODE + SampleCodeString + "_" + flowcellName + "_" + file) + + +# ----------------------------------------------------------------------------- + +def getThreadProperties(transaction): + + threadPropertyDict = {} + threadProperties = transaction.getGlobalState().getThreadParameters().getThreadProperties() + + for key in threadProperties: + try: + threadPropertyDict[key] = threadProperties.getProperty(key) + except: + pass + return threadPropertyDict + +# ----------------------------------------------------------------------------- + +def extractFlowCellName (runFolderName): + return runFolderName.split('_')[-1][1:] + +# ----------------------------------------------------------------------------- + +def process(transaction): + + threadPropertyDict = getThreadProperties(transaction) + incomingRootDir = threadPropertyDict[u'incoming-root-dir'] + laneFolder = incomingRootDir + '/' + LANE_DROPBOX + '/' + basecallStatsFolder = incomingRootDir + '/' + BASECALL_DROPBOX + '/' + + incomingPath = transaction.getIncoming().getPath() + runFolderName = transaction.getIncoming().getName() + fcName = extractFlowCellName(runFolderName) + + # ----------------------------------------------------------------------------- + # move Lanes into a different drop box + laneList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + '*' + REGEX_LANES) + laneList.sort() + + undeterminedList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + '*' + REGEX_UNDETERMINED) + undeterminedList.sort() + + # add the Flow Cell Name to the Undetermined FASTQ files + [renameFiles(transaction, dir, fcName) for dir in undeterminedList] + + # Multiplexing: + # First move the Undetermined reads to the other ones + [shutil.move(undeterminedLane, laneList[int(undeterminedLane.split('/')[-1][-1])-1] +'/' + undeterminedLane.split('/')[-1]) for undeterminedLane in undeterminedList] + + [shutil.move(lane, laneFolder + lane.split('/')[-1]) for lane in laneList] + markerFileList = [touch_markerfile(laneFolder + MARKER_STRING+lane.split('/')[-1]) for lane in laneList] + + # ----------------------------------------------------------------------------- + # move Basecall Stats into a different drop box + + # Build up a list of file which are part of the data set + for lane in xrange(1, len(laneList)+1): + path = incomingPath + '/'+ UNALIGNED_FOLDER + str(lane) + '/' + fileList=glob.glob(path + REGEX_FILES) + [fileList.append(i) for i in glob.glob(path + REGEX_MAKEFILE)] + + dest = fcName + '_' + str(lane) + shutil.copytree(path + BASECALL_STATS_FOLDER + fcName , basecallStatsFolder + dest + '/' + BASECALL_STATS_FOLDER + fcName) + [shutil.move(file, basecallStatsFolder + dest) for file in fileList] + touch_markerfile(basecallStatsFolder + MARKER_STRING + dest) diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/maintenance-tasks/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/maintenance-tasks/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/reporting-plugins/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/reporting-plugins/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/illumina-ngs/2/dss/services/.gitignore b/js-test/servers/common/core-plugins/illumina-ngs/2/dss/services/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/proteomics-optional/1/as/initialize-master-data.py b/js-test/servers/common/core-plugins/proteomics-optional/1/as/initialize-master-data.py new file mode 100644 index 0000000000000000000000000000000000000000..1cf319052b0a133dc7fa664bc870fdb3bfabce60 --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics-optional/1/as/initialize-master-data.py @@ -0,0 +1,83 @@ +import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType + +tr = service.transaction() + +file_type_HTML = tr.getOrCreateNewFileFormatType('HTML') +file_type_HTML.setDescription('HTML File') + +file_type_MZDATA = tr.getOrCreateNewFileFormatType('MZDATA') +file_type_MZDATA.setDescription('Mass spectrometry data format.') + +file_type_MZML = tr.getOrCreateNewFileFormatType('MZML') +file_type_MZML.setDescription('Mass spectrometry data format. \ +Unifiying mzXML and mzData formats, as released at the \ +2008 American Society for Mass Spectrometry Meeting.') + +file_type_MZXML = tr.getOrCreateNewFileFormatType('MZXML') +file_type_MZXML.setDescription('Mass spectrometry data format.') + +file_type_RAW = tr.getOrCreateNewFileFormatType('RAW') +file_type_RAW.setDescription('Proprietary file format for Thermo mass sepectrometry data.') + +file_type_TGZ = tr.getOrCreateNewFileFormatType('TGZ') +file_type_TGZ.setDescription('gzipped tar') + +file_type_WIFF = tr.getOrCreateNewFileFormatType('WIFF') +file_type_WIFF.setDescription('Proprieatry file format for Sciex and Agilent mass spectrometry data.') + +file_type_ZIP = tr.getOrCreateNewFileFormatType('ZIP') +file_type_ZIP.setDescription('A zipped package') + +vocabulary_TREATMENT_TYPE = tr.getOrCreateNewVocabulary('TREATMENT_TYPE') + +vocabulary_term_TREATMENT_TYPE_PH = tr.createNewVocabularyTerm('PH') +vocabulary_term_TREATMENT_TYPE_PH.setDescription(None) +vocabulary_term_TREATMENT_TYPE_PH.setUrl(None) +vocabulary_term_TREATMENT_TYPE_PH.setLabel('ph') +vocabulary_term_TREATMENT_TYPE_PH.setOrdinal(1) +vocabulary_TREATMENT_TYPE.addTerm(vocabulary_term_TREATMENT_TYPE_PH) + +exp_type_BIOLOGICAL_EXPERIMENT = tr.getOrCreateNewExperimentType('BIOLOGICAL_EXPERIMENT') +exp_type_BIOLOGICAL_EXPERIMENT.setDescription('A biological experiment') + +exp_type_MS_INJECT = tr.getOrCreateNewExperimentType('MS_INJECT') +exp_type_MS_INJECT.setDescription('MS injection experiment') + +exp_type_MS_QUANTIFICATION = tr.getOrCreateNewExperimentType('MS_QUANTIFICATION') +exp_type_MS_QUANTIFICATION.setDescription('Quantification of LC-MS data') + +data_set_type_MZXML_DATA = tr.getOrCreateNewDataSetType('MZXML_DATA') +data_set_type_MZXML_DATA.setDescription('standardized format for ms data') +data_set_type_MZXML_DATA.setContainerType(False) + +data_set_type_RAW_DATA = tr.getOrCreateNewDataSetType('RAW_DATA') +data_set_type_RAW_DATA.setDescription(None) +data_set_type_RAW_DATA.setContainerType(False) + +prop_type_PARENTDATASETCODES = tr.getOrCreateNewPropertyType('PARENT-DATA-SET-CODES', DataType.VARCHAR) +prop_type_PARENTDATASETCODES.setLabel('Parent Dataset Codes') +prop_type_PARENTDATASETCODES.setManagedInternally(False) +prop_type_PARENTDATASETCODES.setInternalNamespace(False) + +prop_type_TREATMENT_TYPE1 = tr.getOrCreateNewPropertyType('TREATMENT_TYPE1', DataType.CONTROLLEDVOCABULARY) +prop_type_TREATMENT_TYPE1.setLabel('Treatment Type 1') +prop_type_TREATMENT_TYPE1.setManagedInternally(False) +prop_type_TREATMENT_TYPE1.setInternalNamespace(False) + +prop_type_TREATMENT_TYPE1.setVocabulary(vocabulary_TREATMENT_TYPE) + +prop_type_TREATMENT_TYPE2 = tr.getOrCreateNewPropertyType('TREATMENT_TYPE2', DataType.CONTROLLEDVOCABULARY) +prop_type_TREATMENT_TYPE2.setLabel('Treatment Type 2') +prop_type_TREATMENT_TYPE2.setManagedInternally(False) +prop_type_TREATMENT_TYPE2.setInternalNamespace(False) + +prop_type_TREATMENT_TYPE2.setVocabulary(vocabulary_TREATMENT_TYPE) + +prop_type_TREATMENT_TYPE3 = tr.getOrCreateNewPropertyType('TREATMENT_TYPE3', DataType.CONTROLLEDVOCABULARY) +prop_type_TREATMENT_TYPE3.setLabel('Treatment Type 3') +prop_type_TREATMENT_TYPE3.setManagedInternally(False) +prop_type_TREATMENT_TYPE3.setInternalNamespace(False) + +prop_type_TREATMENT_TYPE3.setVocabulary(vocabulary_TREATMENT_TYPE) + + diff --git a/js-test/servers/common/core-plugins/proteomics/1/as/dss-data-sources/DSS1/plugin.properties b/js-test/servers/common/core-plugins/proteomics/1/as/dss-data-sources/DSS1/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..2b058bae53802ca59aa7de46f71342e050a1a7af --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics/1/as/dss-data-sources/DSS1/plugin.properties @@ -0,0 +1,11 @@ +# +# Data Store Server data source for the database storing protein identification and quantification results. +# +# Variables: +# proteomics-basic-database-name +# First part of the database name. Default value is 'proteomics'. +# proteomics-database-kind +# Second part of the database name. Default value is 'productive'. +# +database-driver = org.postgresql.Driver +database-url = jdbc:postgresql://localhost/${proteomics-basic-database-name:proteomics}_${proteomics-database-kind:productive} diff --git a/js-test/servers/common/core-plugins/proteomics/1/as/initialize-master-data.py b/js-test/servers/common/core-plugins/proteomics/1/as/initialize-master-data.py new file mode 100644 index 0000000000000000000000000000000000000000..ddbffc12eb5754fd5cbac45573ff210656b25723 --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics/1/as/initialize-master-data.py @@ -0,0 +1,32 @@ +import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType + +tr = service.transaction() + +vocabulary_TREATMENT_TYPE = tr.getOrCreateNewVocabulary('TREATMENT_TYPE') +vocabulary_TREATMENT_TYPE.setDescription('Type of treatment of a biological sample.') +vocabulary_TREATMENT_TYPE.setUrlTemplate(None) +vocabulary_TREATMENT_TYPE.setManagedInternally(False) +vocabulary_TREATMENT_TYPE.setInternalNamespace(False) +vocabulary_TREATMENT_TYPE.setChosenFromList(True) + +exp_type_MS_SEARCH = tr.getOrCreateNewExperimentType('MS_SEARCH') +exp_type_MS_SEARCH.setDescription('MS_SEARCH experiment') + +samp_type_MS_INJECTION = tr.getOrCreateNewSampleType('MS_INJECTION') +samp_type_MS_INJECTION.setDescription('injection of a biological sample into a MS') +samp_type_MS_INJECTION.setListable(True) +samp_type_MS_INJECTION.setSubcodeUnique(False) +samp_type_MS_INJECTION.setAutoGeneratedCode(False) +samp_type_MS_INJECTION.setGeneratedCodePrefix('S') + +samp_type_SEARCH = tr.getOrCreateNewSampleType('SEARCH') +samp_type_SEARCH.setDescription('pointer to an MS_INJECTION sample used as placeholder for searches') +samp_type_SEARCH.setListable(True) +samp_type_SEARCH.setSubcodeUnique(False) +samp_type_SEARCH.setAutoGeneratedCode(False) +samp_type_SEARCH.setGeneratedCodePrefix('S') + +data_set_type_PROT_RESULT = tr.getOrCreateNewDataSetType('PROT_RESULT') +data_set_type_PROT_RESULT.setDescription('protXML file') +data_set_type_PROT_RESULT.setContainerType(False) + diff --git a/js-test/servers/common/core-plugins/proteomics/1/dss/data-sources/proteomics-db/plugin.properties b/js-test/servers/common/core-plugins/proteomics/1/dss/data-sources/proteomics-db/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..f4c7eba093bcfbf921920b74b8b563a72ee51659 --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics/1/dss/data-sources/proteomics-db/plugin.properties @@ -0,0 +1,19 @@ +# +# Data source for the database stroing protein identification and quantification results. +# +# Variables: +# proteomics-database.url-host-part +# The host and optionally port. Default is 'localhost'. +# proteomics-basic-database-name +# First part of the database name. Default value is 'proteomics'. +# proteomics-database-kind +# Second part of the database name. Default value is 'productive'. +# proteomics-sql-root-folder +# Path to root folder of SQL scripts. Default value is an empty string. +# +version-holder-class = ch.systemsx.cisd.openbis.etlserver.proteomics.DatabaseVersionHolder +databaseEngineCode = postgresql +urlHostPart = ${proteomics-database.url-host-part:localhost} +basicDatabaseName = ${proteomics-basic-database-name:proteomics} +databaseKind = ${proteomics-database-kind:productive} +scriptFolder = ${proteomics-sql-root-folder:}sql/proteomics diff --git a/js-test/servers/common/core-plugins/proteomics/1/dss/drop-boxes/ms-injection/plugin.properties b/js-test/servers/common/core-plugins/proteomics/1/dss/drop-boxes/ms-injection/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..bff82ed31c5b6ee6c3a746c130ffad6bf808265b --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics/1/dss/drop-boxes/ms-injection/plugin.properties @@ -0,0 +1,18 @@ +# +# Drop box for MS spectra data. +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-ms-injection + +# Determines when the incoming data should be considered complete and ready to be processed. +# Allowed values: +# - auto-detection - when no write access will be detected for a specified 'quite-period' +# - marker-file - when an appropriate marker file for the data exists. +# The default value is 'marker-file'. +incoming-data-completeness-condition = auto-detection + +data-set-info-extractor = ch.systemsx.cisd.openbis.etlserver.proteomics.DataSetInfoExtractorForMSInjection +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +type-extractor = ch.systemsx.cisd.openbis.etlserver.proteomics.TypeExtractorForMSInjection diff --git a/js-test/servers/common/core-plugins/proteomics/1/dss/drop-boxes/ms-search/plugin.properties b/js-test/servers/common/core-plugins/proteomics/1/dss/drop-boxes/ms-search/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..fc80280936e4d73581ff17bd4a4aadcea24a45c2 --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics/1/dss/drop-boxes/ms-search/plugin.properties @@ -0,0 +1,29 @@ +# +# Drop box for protein identification and quantification data. +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +# +# This drop box assumes that data source 'proteomics-db' has been defined. +# +incoming-dir = ${incoming-root-dir}/incoming-ms-search + +incoming-data-completeness-condition = auto-detection + +data-set-info-extractor = ch.systemsx.cisd.openbis.etlserver.proteomics.DataSetInfoExtractorForProteinResults +data-set-info-extractor.separator = + + +type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor +type-extractor.file-format-type = XML +type-extractor.locator-type = RELATIVE_LOCATION +type-extractor.data-set-type = PROT_RESULT +type-extractor.is-measured = false + +storage-processor = ch.systemsx.cisd.openbis.etlserver.proteomics.StorageProcessorWithResultDataSetUploader +storage-processor.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.assuming-extended-prot-xml = false +storage-processor.database.basic-name = ${proteomics-db.basicDatabaseName} +storage-processor.database.kind = ${proteomics-db.databaseKind} +storage-processor.database.owner = +storage-processor.database.password = \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/proteomics/1/dss/maintenance-tasks/proteomics-db-clean-up/plugin.properties b/js-test/servers/common/core-plugins/proteomics/1/dss/maintenance-tasks/proteomics-db-clean-up/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..36cd4bae6c223aacdaf381679d03a9e788a64a85 --- /dev/null +++ b/js-test/servers/common/core-plugins/proteomics/1/dss/maintenance-tasks/proteomics-db-clean-up/plugin.properties @@ -0,0 +1,8 @@ +# +# Maintenance task which does a database clean up by deleting all data sets deleted in application server. +# This task assumes that data source 'proteomics-db' has been defined. +# +class = ch.systemsx.cisd.etlserver.plugins.DeleteFromExternalDBMaintenanceTask +interval = 300 +data-source = proteomics-db +data-set-table-name = data_sets diff --git a/js-test/servers/common/core-plugins/screening-optional/1/as/initialize-master-data.py b/js-test/servers/common/core-plugins/screening-optional/1/as/initialize-master-data.py new file mode 100644 index 0000000000000000000000000000000000000000..3ff720d3f2dd5bb0e8f2a69c5ee7e5049ac97b70 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening-optional/1/as/initialize-master-data.py @@ -0,0 +1,138 @@ +import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType + +tr = service.transaction() + +file_type_CSV = tr.getOrCreateNewFileFormatType('CSV') +file_type_CSV.setDescription('files with values separated by comma or semicolon') + +file_type_JPG = tr.getOrCreateNewFileFormatType('JPG') +file_type_JPG.setDescription(None) + +vocabulary_MICROSCOPE = tr.getOrCreateNewVocabulary('MICROSCOPE') +vocabulary_MICROSCOPE.setDescription('Microscope used in an experiment.') +vocabulary_MICROSCOPE.setUrlTemplate(None) +vocabulary_MICROSCOPE.setManagedInternally(False) +vocabulary_MICROSCOPE.setInternalNamespace(False) +vocabulary_MICROSCOPE.setChosenFromList(True) + +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICRO_2 = tr.createNewVocabularyTerm('MD_IMAGEXPRESS_MICRO_2') +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICRO_2.setDescription(None) +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICRO_2.setLabel(None) +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICRO_2.setOrdinal(3) +vocabulary_MICROSCOPE.addTerm(vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICRO_2) + +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICROLIVE = tr.createNewVocabularyTerm('MD_IMAGEXPRESS_MICROLIVE') +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICROLIVE.setDescription(None) +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICROLIVE.setLabel(None) +vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICROLIVE.setOrdinal(2) +vocabulary_MICROSCOPE.addTerm(vocabulary_term_MICROSCOPE_MD_IMAGEXPRESS_MICROLIVE) + +vocabulary_term_MICROSCOPE_BD_PATHWAY_855 = tr.createNewVocabularyTerm('BD_PATHWAY_855') +vocabulary_term_MICROSCOPE_BD_PATHWAY_855.setDescription(None) +vocabulary_term_MICROSCOPE_BD_PATHWAY_855.setLabel(None) +vocabulary_term_MICROSCOPE_BD_PATHWAY_855.setOrdinal(1) +vocabulary_MICROSCOPE.addTerm(vocabulary_term_MICROSCOPE_BD_PATHWAY_855) + +exp_type_COMPOUND_HCS = tr.getOrCreateNewExperimentType('COMPOUND_HCS') +exp_type_COMPOUND_HCS.setDescription('Compound High Content Screening') + +exp_type_SIRNA_HCS = tr.getOrCreateNewExperimentType('SIRNA_HCS') +exp_type_SIRNA_HCS.setDescription('Small Interfering RNA High Content Screening') + +data_set_type_HCS_ANALYSIS_CELL_CLASS = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_CELL_CLASS') +data_set_type_HCS_ANALYSIS_CELL_CLASS.setDescription('HCS image analysis cell classification') +data_set_type_HCS_ANALYSIS_CELL_CLASS.setContainerType(False) + +data_set_type_HCS_ANALYSIS_CELL_FEATURES = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_CELL_FEATURES') +data_set_type_HCS_ANALYSIS_CELL_FEATURES.setDescription('HCS image analysis cell feature vectors') +data_set_type_HCS_ANALYSIS_CELL_FEATURES.setContainerType(False) + +data_set_type_HCS_ANALYSIS_CELL_SEGMENTATION = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_CELL_SEGMENTATION') +data_set_type_HCS_ANALYSIS_CELL_SEGMENTATION.setDescription('HCS image analysis cell segmentation') +data_set_type_HCS_ANALYSIS_CELL_SEGMENTATION.setContainerType(False) + +data_set_type_MICROSCOPY_IMG_OVERVIEW = tr.getOrCreateNewDataSetType('MICROSCOPY_IMG_OVERVIEW') +data_set_type_MICROSCOPY_IMG_OVERVIEW.setDescription('Overview Microscopy Images. Generated from raw images.') +data_set_type_MICROSCOPY_IMG_OVERVIEW.setContainerType(False) + +data_set_type_HCS_IMAGE_CONTAINER_SEGMENTATION = tr.getOrCreateNewDataSetType('HCS_IMAGE_CONTAINER_SEGMENTATION') +data_set_type_HCS_IMAGE_CONTAINER_SEGMENTATION.setDescription('Container for HCS segmentation (a.k.a. overlays) images of different resolutions (original, overviews, thumbnails).') +data_set_type_HCS_IMAGE_CONTAINER_SEGMENTATION.setContainerType(True) + +data_set_type_HCS_ANALYSIS_CONTAINER_CELL_FEATURES = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_CONTAINER_CELL_FEATURES') +data_set_type_HCS_ANALYSIS_CONTAINER_CELL_FEATURES.setDescription('Container for HCS image analysis cell feature vectors.') +data_set_type_HCS_ANALYSIS_CONTAINER_CELL_FEATURES.setContainerType(True) + +data_set_type_HCS_ANALYSIS_CONTAINER_WELL_FEATURES = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_CONTAINER_WELL_FEATURES') +data_set_type_HCS_ANALYSIS_CONTAINER_WELL_FEATURES.setDescription('Container for HCS image analysis well feature vectors.') +data_set_type_HCS_ANALYSIS_CONTAINER_WELL_FEATURES.setContainerType(True) + +material_type_BACTERIUM = tr.getOrCreateNewMaterialType('BACTERIUM') +material_type_BACTERIUM.setDescription('Bacterium') + +material_type_CELL_LINE = tr.getOrCreateNewMaterialType('CELL_LINE') +material_type_CELL_LINE.setDescription('Cell Line or Cell Culture. The growing of cells under controlled conditions.') + +material_type_VIRUS = tr.getOrCreateNewMaterialType('VIRUS') +material_type_VIRUS.setDescription('Virus') + +# Already exists in the database +prop_type_DESCRIPTION = tr.getPropertyType('DESCRIPTION') +prop_type_ANALYSIS_PROCEDURE = tr.getPropertyType('ANALYSIS_PROCEDURE') +prop_type_RESOLUTION = tr.getPropertyType('RESOLUTION') + +prop_type_MICROSCOPE = tr.getOrCreateNewPropertyType('MICROSCOPE', DataType.CONTROLLEDVOCABULARY) +prop_type_MICROSCOPE.setLabel('Microscope') +prop_type_MICROSCOPE.setManagedInternally(False) +prop_type_MICROSCOPE.setInternalNamespace(False) +prop_type_MICROSCOPE.setVocabulary(vocabulary_MICROSCOPE) + +prop_type_NUMBER_OF_CHANNEL = tr.getOrCreateNewPropertyType('NUMBER_OF_CHANNEL', DataType.INTEGER) +prop_type_NUMBER_OF_CHANNEL.setLabel('Channels') +prop_type_NUMBER_OF_CHANNEL.setManagedInternally(False) +prop_type_NUMBER_OF_CHANNEL.setInternalNamespace(False) + +prop_type_REFSEQ = tr.getOrCreateNewPropertyType('REFSEQ', DataType.VARCHAR) +prop_type_REFSEQ.setLabel('RefSeq') +prop_type_REFSEQ.setManagedInternally(False) +prop_type_REFSEQ.setInternalNamespace(False) + +assignment_MATERIAL_BACTERIUM_DESCRIPTION = tr.assignPropertyType(material_type_BACTERIUM, prop_type_DESCRIPTION) +assignment_MATERIAL_BACTERIUM_DESCRIPTION.setMandatory(False) +assignment_MATERIAL_BACTERIUM_DESCRIPTION.setSection(None) +assignment_MATERIAL_BACTERIUM_DESCRIPTION.setPositionInForms(1) + +assignment_EXPERIMENT_COMPOUND_HCS_DESCRIPTION = tr.assignPropertyType(exp_type_COMPOUND_HCS, prop_type_DESCRIPTION) +assignment_EXPERIMENT_COMPOUND_HCS_DESCRIPTION.setMandatory(True) +assignment_EXPERIMENT_COMPOUND_HCS_DESCRIPTION.setSection(None) +assignment_EXPERIMENT_COMPOUND_HCS_DESCRIPTION.setPositionInForms(1) + +assignment_DATA_SET_HCS_ANALYSIS_WELL_FEATURES_ANALYSIS_PROCEDURE = tr.assignPropertyType(data_set_type_HCS_ANALYSIS_CONTAINER_WELL_FEATURES, prop_type_ANALYSIS_PROCEDURE) +assignment_DATA_SET_HCS_ANALYSIS_WELL_FEATURES_ANALYSIS_PROCEDURE.setMandatory(False) +assignment_DATA_SET_HCS_ANALYSIS_WELL_FEATURES_ANALYSIS_PROCEDURE.setSection(None) +assignment_DATA_SET_HCS_ANALYSIS_WELL_FEATURES_ANALYSIS_PROCEDURE.setPositionInForms(1) + +assignment_DATA_SET_HCS_IMAGE_SEGMENTATION_ANALYSIS_PROCEDURE = tr.assignPropertyType(data_set_type_HCS_IMAGE_CONTAINER_SEGMENTATION, prop_type_ANALYSIS_PROCEDURE) +assignment_DATA_SET_HCS_IMAGE_SEGMENTATION_ANALYSIS_PROCEDURE.setMandatory(False) +assignment_DATA_SET_HCS_IMAGE_SEGMENTATION_ANALYSIS_PROCEDURE.setSection(None) +assignment_DATA_SET_HCS_IMAGE_SEGMENTATION_ANALYSIS_PROCEDURE.setPositionInForms(1) + +assignment_DATA_SET_MICROSCOPY_IMG_OVERVIEW_RESOLUTION = tr.assignPropertyType(data_set_type_MICROSCOPY_IMG_OVERVIEW, prop_type_RESOLUTION) +assignment_DATA_SET_MICROSCOPY_IMG_OVERVIEW_RESOLUTION.setMandatory(False) +assignment_DATA_SET_MICROSCOPY_IMG_OVERVIEW_RESOLUTION.setSection(None) +assignment_DATA_SET_MICROSCOPY_IMG_OVERVIEW_RESOLUTION.setPositionInForms(1) + +assignment_EXPERIMENT_SIRNA_HCS_DESCRIPTION = tr.assignPropertyType(exp_type_SIRNA_HCS, prop_type_DESCRIPTION) +assignment_EXPERIMENT_SIRNA_HCS_DESCRIPTION.setMandatory(True) +assignment_EXPERIMENT_SIRNA_HCS_DESCRIPTION.setSection(None) +assignment_EXPERIMENT_SIRNA_HCS_DESCRIPTION.setPositionInForms(1) + +assignment_EXPERIMENT_SIRNA_HCS_MICROSCOPE = tr.assignPropertyType(exp_type_SIRNA_HCS, prop_type_MICROSCOPE) +assignment_EXPERIMENT_SIRNA_HCS_MICROSCOPE.setMandatory(False) +assignment_EXPERIMENT_SIRNA_HCS_MICROSCOPE.setSection(None) +assignment_EXPERIMENT_SIRNA_HCS_MICROSCOPE.setPositionInForms(2) + +assignment_MATERIAL_VIRUS_DESCRIPTION = tr.assignPropertyType(material_type_VIRUS, prop_type_DESCRIPTION) +assignment_MATERIAL_VIRUS_DESCRIPTION.setMandatory(False) +assignment_MATERIAL_VIRUS_DESCRIPTION.setSection(None) +assignment_MATERIAL_VIRUS_DESCRIPTION.setPositionInForms(1) diff --git a/js-test/servers/common/core-plugins/screening/1/dss/data-sources/imaging-db/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/data-sources/imaging-db/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..6897aa06ba42e062b633d980acd924f2420331b6 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/data-sources/imaging-db/plugin.properties @@ -0,0 +1,25 @@ +# +# Data source for the database storing image meta data. +# +# Variables: +# imaging-database.url-host-part +# The host and optionally port. Default is 'localhost'. +# imaging-database.kind +# Second part of the database name. Default value is 'prod'. +# screening-sql-root-folder +# Path to root folder of SQL scripts. Default value is an empty string. +# +version-holder-class = ch.systemsx.cisd.openbis.dss.etl.ImagingDatabaseVersionHolder +databaseEngineCode = postgresql +basicDatabaseName = imaging +urlHostPart = ${imaging-database.url-host-part:localhost} +databaseKind = ${imaging-database.kind:prod} +scriptFolder = ${screening-sql-root-folder:}sql/imaging +owner = +password = +# Credentials of a database user which is able to create a new database or roles in it. +# Leave empty to use the db engines defaults. +# Used only during the first start of the server or when server is upgraded to a new version. +adminUser = +adminPassword = + diff --git a/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..aeff397fb86ad4e2fb72e967d993028e0be3822b --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py @@ -0,0 +1,84 @@ +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import ImageMetadata +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry + +SPACE_CODE = "TEST" +PROJECT_CODE = "TEST-PROJECT" +PROJECT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s" % vars() +EXPERIMENT_CODE = "DEMO-EXP-HCS" +EXPERIMENT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s/%(EXPERIMENT_CODE)s" % vars() + +PLATE_CODE = "PLATE1" +PLATE_ID = "/%(SPACE_CODE)s/%(PLATE_CODE)s" % vars() +PLATE_GEOMETRY_PROPERTY_CODE = "$PLATE_GEOMETRY" +PLATE_GEOMETRY = "384_WELLS_16X24" + + +def create_space_if_needed(transaction): + space = transaction.getSpace(SPACE_CODE) + if None == space: + space = transaction.createNewSpace(SPACE_CODE, None) + space.setDescription("A demo space") + +def create_project_if_needed(transaction): + project = transaction.getProject(PROJECT_ID) + if None == project: + create_space_if_needed(transaction) + project = transaction.createNewProject(PROJECT_ID) + project.setDescription("A demo project") + +def create_experiment_if_needed(transaction): + """ Get the specified experiment or register it if necessary """ + exp = transaction.getExperiment(EXPERIMENT_ID) + if None == exp: + create_project_if_needed(transaction) + print 'Creating new experiment : ' + EXPERIMENT_ID + exp = transaction.createNewExperiment(EXPERIMENT_ID, 'SIRNA_HCS') + + return exp + +def create_plate_if_needed(transaction): + """ Get the specified sample or register it if necessary """ + + samp = transaction.getSample(PLATE_ID) + + if None == samp: + exp = create_experiment_if_needed(transaction) + samp = transaction.createNewSample(PLATE_ID, 'PLATE') + samp.setPropertyValue(PLATE_GEOMETRY_PROPERTY_CODE, PLATE_GEOMETRY) + samp.setExperiment(exp) + + return samp + + +class MyImageDataSetConfig(SimpleImageDataConfig): + def extractImageMetadata(self, imagePath): + + basename = os.path.splitext(imagePath)[0] + (plate, well, tile, channelCode) = basename.split("_") + + image_tokens = ImageMetadata() + image_tokens.well = well + try: + image_tokens.tileNumber = int(tile) + except ValueError: + raise Exception("Cannot parse field number from '" + tile + "' in '" + basename + "' file name.") + + image_tokens.channelCode = channelCode + return image_tokens + + def getTileGeometry(self, imageTokens, maxTileNumber): + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3) + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = MyImageDataSetConfig() + imageDataset.setRawImageDatasetType() + imageDataset.setGenerateThumbnails(True) + imageDataset.setUseImageMagicToGenerateThumbnails(False) + plate = create_plate_if_needed(transaction) + dataset = transaction.createNewImageDataSet(imageDataset, incoming); + dataset.setSample(plate) + transaction.moveFile(incoming.getPath(), dataset); diff --git a/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/hcs-dropbox/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/hcs-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9e4417bc5b6c1e72de88a5a7c7140f6ef6f05c6a --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/hcs-dropbox/plugin.properties @@ -0,0 +1,13 @@ +# +# Drop box for HCS data sets +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-hcs +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = hcs-dropbox.py +storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.data-source = imaging-db +storage-processor.define-channels-per-experiment = false diff --git a/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/simple-dropbox/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/simple-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0c9653f03f362fbf44611691ad53ec344c73c009 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/simple-dropbox/plugin.properties @@ -0,0 +1,12 @@ +# +# Simple drop box which registers any file/folder +# +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-simple +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = simple-dropbox.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/simple-dropbox/simple-dropbox.py b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/simple-dropbox/simple-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..9067fe717ed98c987c8b56a8ef0ebc71cc83dc17 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/drop-boxes/simple-dropbox/simple-dropbox.py @@ -0,0 +1,13 @@ +#! /usr/bin/env python +def process(transaction): + expid = "/TEST/TEST-PROJECT/DEMO-EXP-SIMPLE" + exp = transaction.getExperiment(expid) + + if None == exp: + exp = transaction.createNewExperiment(expid, "TEST-EXPERIMENT") + + dataSet = transaction.createNewDataSet() + + dataSet.setDataSetType("UNKNOWN") + dataSet.setExperiment(exp) + transaction.moveFile(transaction.getIncoming().getAbsolutePath(), dataSet) diff --git a/js-test/servers/common/core-plugins/screening/1/dss/image-overview-plugins/microscopy-image-overview/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/image-overview-plugins/microscopy-image-overview/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..4bb0362520407453241cee719cb6ddaa3ba9753a --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/image-overview-plugins/microscopy-image-overview/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.MergingImagesDownloadServlet +dataset-types = MICROSCOPY_IMAGE diff --git a/js-test/servers/common/core-plugins/screening/1/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0376c8e51cf99da41257f764554ed8525580b596 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties @@ -0,0 +1,8 @@ +# +# Maintenance task which does a database clean up by deleting all data sets deleted in application server. +# This task assumes that data source 'imaging-db' has been defined. +# +class = ch.systemsx.cisd.openbis.dss.etl.DeleteFromImagingDBMaintenanceTask +# specified in seconds. Here : every day +interval = 86400 +data-source = imaging-db diff --git a/js-test/servers/common/core-plugins/screening/1/dss/reporting-plugins/default-plate-image-analysis/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/reporting-plugins/default-plate-image-analysis/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..349c4619c6a5579292141438761dcd8864d5ee22 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/reporting-plugins/default-plate-image-analysis/plugin.properties @@ -0,0 +1,4 @@ +label = Image Analysis Results +class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.ImageAnalysisMergedRowsReportingPlugin +dataset-types = HCS_ANALYSIS_.*WELL_FEATURES +properties-file = diff --git a/js-test/servers/common/core-plugins/screening/1/dss/services/screening-dss-api-json/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/services/screening-dss-api-json/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ebfa05eeff69cf7bdd07a54ef649e9be3cd1ab8f --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/services/screening-dss-api-json/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.DssScreeningApiJsonServlet +path = /rmi-datastore-server-screening-api-v1.json/* diff --git a/js-test/servers/common/core-plugins/screening/1/dss/services/screening-dss-api/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/services/screening-dss-api/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..dc5e7415dae53f54739ef76efead59b349005b63 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/services/screening-dss-api/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.DssScreeningApiServlet +path = /rmi-datastore-server-screening-api-v1/* diff --git a/js-test/servers/common/core-plugins/screening/1/dss/services/screening-images/plugin.properties b/js-test/servers/common/core-plugins/screening/1/dss/services/screening-images/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..fc95d81dad3e32d0a38027e13a7e7c62a867453f --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/1/dss/services/screening-images/plugin.properties @@ -0,0 +1,5 @@ +# +# Image service +# +class = ch.systemsx.cisd.openbis.dss.generic.server.MergingImagesDownloadServlet +path = /datastore_server_screening/* diff --git a/js-test/servers/common/core-plugins/screening/2/as/dss-data-sources/DSS1/.gitignore b/js-test/servers/common/core-plugins/screening/2/as/dss-data-sources/DSS1/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/screening/2/dss/data-sources/imaging-db/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/data-sources/imaging-db/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..6897aa06ba42e062b633d980acd924f2420331b6 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/data-sources/imaging-db/plugin.properties @@ -0,0 +1,25 @@ +# +# Data source for the database storing image meta data. +# +# Variables: +# imaging-database.url-host-part +# The host and optionally port. Default is 'localhost'. +# imaging-database.kind +# Second part of the database name. Default value is 'prod'. +# screening-sql-root-folder +# Path to root folder of SQL scripts. Default value is an empty string. +# +version-holder-class = ch.systemsx.cisd.openbis.dss.etl.ImagingDatabaseVersionHolder +databaseEngineCode = postgresql +basicDatabaseName = imaging +urlHostPart = ${imaging-database.url-host-part:localhost} +databaseKind = ${imaging-database.kind:prod} +scriptFolder = ${screening-sql-root-folder:}sql/imaging +owner = +password = +# Credentials of a database user which is able to create a new database or roles in it. +# Leave empty to use the db engines defaults. +# Used only during the first start of the server or when server is upgraded to a new version. +adminUser = +adminPassword = + diff --git a/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..aeff397fb86ad4e2fb72e967d993028e0be3822b --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py @@ -0,0 +1,84 @@ +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import ImageMetadata +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry + +SPACE_CODE = "TEST" +PROJECT_CODE = "TEST-PROJECT" +PROJECT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s" % vars() +EXPERIMENT_CODE = "DEMO-EXP-HCS" +EXPERIMENT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s/%(EXPERIMENT_CODE)s" % vars() + +PLATE_CODE = "PLATE1" +PLATE_ID = "/%(SPACE_CODE)s/%(PLATE_CODE)s" % vars() +PLATE_GEOMETRY_PROPERTY_CODE = "$PLATE_GEOMETRY" +PLATE_GEOMETRY = "384_WELLS_16X24" + + +def create_space_if_needed(transaction): + space = transaction.getSpace(SPACE_CODE) + if None == space: + space = transaction.createNewSpace(SPACE_CODE, None) + space.setDescription("A demo space") + +def create_project_if_needed(transaction): + project = transaction.getProject(PROJECT_ID) + if None == project: + create_space_if_needed(transaction) + project = transaction.createNewProject(PROJECT_ID) + project.setDescription("A demo project") + +def create_experiment_if_needed(transaction): + """ Get the specified experiment or register it if necessary """ + exp = transaction.getExperiment(EXPERIMENT_ID) + if None == exp: + create_project_if_needed(transaction) + print 'Creating new experiment : ' + EXPERIMENT_ID + exp = transaction.createNewExperiment(EXPERIMENT_ID, 'SIRNA_HCS') + + return exp + +def create_plate_if_needed(transaction): + """ Get the specified sample or register it if necessary """ + + samp = transaction.getSample(PLATE_ID) + + if None == samp: + exp = create_experiment_if_needed(transaction) + samp = transaction.createNewSample(PLATE_ID, 'PLATE') + samp.setPropertyValue(PLATE_GEOMETRY_PROPERTY_CODE, PLATE_GEOMETRY) + samp.setExperiment(exp) + + return samp + + +class MyImageDataSetConfig(SimpleImageDataConfig): + def extractImageMetadata(self, imagePath): + + basename = os.path.splitext(imagePath)[0] + (plate, well, tile, channelCode) = basename.split("_") + + image_tokens = ImageMetadata() + image_tokens.well = well + try: + image_tokens.tileNumber = int(tile) + except ValueError: + raise Exception("Cannot parse field number from '" + tile + "' in '" + basename + "' file name.") + + image_tokens.channelCode = channelCode + return image_tokens + + def getTileGeometry(self, imageTokens, maxTileNumber): + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3) + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = MyImageDataSetConfig() + imageDataset.setRawImageDatasetType() + imageDataset.setGenerateThumbnails(True) + imageDataset.setUseImageMagicToGenerateThumbnails(False) + plate = create_plate_if_needed(transaction) + dataset = transaction.createNewImageDataSet(imageDataset, incoming); + dataset.setSample(plate) + transaction.moveFile(incoming.getPath(), dataset); diff --git a/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/hcs-dropbox/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/hcs-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9e4417bc5b6c1e72de88a5a7c7140f6ef6f05c6a --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/hcs-dropbox/plugin.properties @@ -0,0 +1,13 @@ +# +# Drop box for HCS data sets +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-hcs +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = hcs-dropbox.py +storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.data-source = imaging-db +storage-processor.define-channels-per-experiment = false diff --git a/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/simple-dropbox/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/simple-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0c9653f03f362fbf44611691ad53ec344c73c009 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/simple-dropbox/plugin.properties @@ -0,0 +1,12 @@ +# +# Simple drop box which registers any file/folder +# +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-simple +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = simple-dropbox.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/simple-dropbox/simple-dropbox.py b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/simple-dropbox/simple-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..9067fe717ed98c987c8b56a8ef0ebc71cc83dc17 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/drop-boxes/simple-dropbox/simple-dropbox.py @@ -0,0 +1,13 @@ +#! /usr/bin/env python +def process(transaction): + expid = "/TEST/TEST-PROJECT/DEMO-EXP-SIMPLE" + exp = transaction.getExperiment(expid) + + if None == exp: + exp = transaction.createNewExperiment(expid, "TEST-EXPERIMENT") + + dataSet = transaction.createNewDataSet() + + dataSet.setDataSetType("UNKNOWN") + dataSet.setExperiment(exp) + transaction.moveFile(transaction.getIncoming().getAbsolutePath(), dataSet) diff --git a/js-test/servers/common/core-plugins/screening/2/dss/image-overview-plugins/microscopy-image-overview/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/image-overview-plugins/microscopy-image-overview/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..4bb0362520407453241cee719cb6ddaa3ba9753a --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/image-overview-plugins/microscopy-image-overview/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.MergingImagesDownloadServlet +dataset-types = MICROSCOPY_IMAGE diff --git a/js-test/servers/common/core-plugins/screening/2/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0376c8e51cf99da41257f764554ed8525580b596 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties @@ -0,0 +1,8 @@ +# +# Maintenance task which does a database clean up by deleting all data sets deleted in application server. +# This task assumes that data source 'imaging-db' has been defined. +# +class = ch.systemsx.cisd.openbis.dss.etl.DeleteFromImagingDBMaintenanceTask +# specified in seconds. Here : every day +interval = 86400 +data-source = imaging-db diff --git a/js-test/servers/common/core-plugins/screening/2/dss/reporting-plugins/default-plate-image-analysis/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/reporting-plugins/default-plate-image-analysis/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..349c4619c6a5579292141438761dcd8864d5ee22 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/reporting-plugins/default-plate-image-analysis/plugin.properties @@ -0,0 +1,4 @@ +label = Image Analysis Results +class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.ImageAnalysisMergedRowsReportingPlugin +dataset-types = HCS_ANALYSIS_.*WELL_FEATURES +properties-file = diff --git a/js-test/servers/common/core-plugins/screening/2/dss/reporting-plugins/feature-lists-aggregation-service/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/reporting-plugins/feature-lists-aggregation-service/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ca45c2a27cfed07f0a7611f3e972738a6b25c6ac --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/reporting-plugins/feature-lists-aggregation-service/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.FeatureListsAggregationServicePlugin +label = Features Lists \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/screening/2/dss/services/screening-dss-api-json/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/services/screening-dss-api-json/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ebfa05eeff69cf7bdd07a54ef649e9be3cd1ab8f --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/services/screening-dss-api-json/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.DssScreeningApiJsonServlet +path = /rmi-datastore-server-screening-api-v1.json/* diff --git a/js-test/servers/common/core-plugins/screening/2/dss/services/screening-dss-api/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/services/screening-dss-api/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..dc5e7415dae53f54739ef76efead59b349005b63 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/services/screening-dss-api/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.DssScreeningApiServlet +path = /rmi-datastore-server-screening-api-v1/* diff --git a/js-test/servers/common/core-plugins/screening/2/dss/services/screening-images/plugin.properties b/js-test/servers/common/core-plugins/screening/2/dss/services/screening-images/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..fc95d81dad3e32d0a38027e13a7e7c62a867453f --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/2/dss/services/screening-images/plugin.properties @@ -0,0 +1,5 @@ +# +# Image service +# +class = ch.systemsx.cisd.openbis.dss.generic.server.MergingImagesDownloadServlet +path = /datastore_server_screening/* diff --git a/js-test/servers/common/core-plugins/screening/3/as/dss-data-sources/DSS1/.gitignore b/js-test/servers/common/core-plugins/screening/3/as/dss-data-sources/DSS1/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/core-plugins/screening/4/as/dss-data-sources/DSS1/plugin.properties b/js-test/servers/common/core-plugins/screening/4/as/dss-data-sources/DSS1/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..6eb9c70dd441139b617f65e9e5772c763773bf57 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/as/dss-data-sources/DSS1/plugin.properties @@ -0,0 +1,11 @@ +# +# Data Store Server data source for the database storing image meta data. +# +# Variables: +# imaging-database.url-host-part +# The host and optionally port. Default is 'localhost'. +# imaging-database.kind +# Second part of the database name. Default value is 'prod'. +# +database-driver = org.postgresql.Driver +database-url = jdbc:postgresql://${imaging-database.url-host-part:localhost}/imaging_test_js diff --git a/js-test/servers/common/core-plugins/screening/4/as/dss-data-sources/DSS2/plugin.properties b/js-test/servers/common/core-plugins/screening/4/as/dss-data-sources/DSS2/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..792930bea393e65685d1fa9d6a528bb378397bed --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/as/dss-data-sources/DSS2/plugin.properties @@ -0,0 +1,11 @@ +# +# Data Store Server data source for the database storing image meta data. +# +# Variables: +# imaging-database.url-host-part +# The host and optionally port. Default is 'localhost'. +# imaging-database.kind +# Second part of the database name. Default value is 'prod'. +# +database-driver = org.postgresql.Driver +database-url = jdbc:postgresql://${imaging-database.url-host-part:localhost}/imaging_test_js2 diff --git a/js-test/servers/common/core-plugins/screening/4/as/initialize-master-data.py b/js-test/servers/common/core-plugins/screening/4/as/initialize-master-data.py new file mode 100644 index 0000000000000000000000000000000000000000..fa4db013c7d06175c60f62758c037de6ae5975b3 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/as/initialize-master-data.py @@ -0,0 +1,233 @@ +import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType + +tr = service.transaction() + +file_type_PNG = tr.getOrCreateNewFileFormatType('PNG') +file_type_PNG.setDescription(None) + +file_type_UNKNOWN = tr.getOrCreateNewFileFormatType('UNKNOWN') +file_type_UNKNOWN.setDescription('Unknown file format') + +vocabulary_PLATE_GEOMETRY = tr.getOrCreateNewVocabulary('PLATE_GEOMETRY') +vocabulary_PLATE_GEOMETRY.setDescription('The geometry or dimensions of a plate') +vocabulary_PLATE_GEOMETRY.setUrlTemplate(None) +vocabulary_PLATE_GEOMETRY.setManagedInternally(True) +vocabulary_PLATE_GEOMETRY.setInternalNamespace(True) +vocabulary_PLATE_GEOMETRY.setChosenFromList(True) + +vocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8 = tr.createNewVocabularyTerm('48_WELLS_6X8') +vocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8.setDescription(None) +vocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8.setLabel('48 Wells, 6x8') +vocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8.setOrdinal(5) +vocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8) + +vocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6 = tr.createNewVocabularyTerm('24_WELLS_4X6') +vocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6.setDescription(None) +vocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6.setLabel('24 Wells, 4x6') +vocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6.setOrdinal(4) +vocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6) + +vocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48 = tr.createNewVocabularyTerm('1536_WELLS_32X48') +vocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48.setDescription(None) +vocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48.setLabel('1536 Wells, 32x48') +vocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48.setOrdinal(3) +vocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48) + +vocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12 = tr.createNewVocabularyTerm('96_WELLS_8X12') +vocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12.setDescription(None) +vocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12.setLabel('96 Wells, 8x12') +vocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12.setOrdinal(2) +vocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12) + +vocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24 = tr.createNewVocabularyTerm('384_WELLS_16X24') +vocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24.setDescription(None) +vocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24.setLabel('384 Wells, 16x24') +vocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24.setOrdinal(1) +vocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24) + +samp_type_CONTROL_WELL = tr.getOrCreateNewSampleType('CONTROL_WELL') +samp_type_CONTROL_WELL.setDescription(None) +samp_type_CONTROL_WELL.setListable(False) +samp_type_CONTROL_WELL.setSubcodeUnique(False) +samp_type_CONTROL_WELL.setAutoGeneratedCode(False) +samp_type_CONTROL_WELL.setGeneratedCodePrefix('C') + +samp_type_LIBRARY = tr.getOrCreateNewSampleType('LIBRARY') +samp_type_LIBRARY.setDescription(None) +samp_type_LIBRARY.setListable(False) +samp_type_LIBRARY.setSubcodeUnique(False) +samp_type_LIBRARY.setAutoGeneratedCode(False) +samp_type_LIBRARY.setGeneratedCodePrefix('L') + +samp_type_PLATE = tr.getOrCreateNewSampleType('PLATE') +samp_type_PLATE.setDescription('Cell Plate') +samp_type_PLATE.setListable(True) +samp_type_PLATE.setSubcodeUnique(False) +samp_type_PLATE.setAutoGeneratedCode(False) +samp_type_PLATE.setGeneratedCodePrefix('S') + +samp_type_SIRNA_WELL = tr.getOrCreateNewSampleType('SIRNA_WELL') +samp_type_SIRNA_WELL.setDescription(None) +samp_type_SIRNA_WELL.setListable(False) +samp_type_SIRNA_WELL.setSubcodeUnique(False) +samp_type_SIRNA_WELL.setAutoGeneratedCode(False) +samp_type_SIRNA_WELL.setGeneratedCodePrefix('O') + +data_set_type_HCS_ANALYSIS_WELL_FEATURES = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_WELL_FEATURES') +data_set_type_HCS_ANALYSIS_WELL_FEATURES.setDescription('HCS image analysis well feature vectors.') +data_set_type_HCS_ANALYSIS_WELL_FEATURES.setContainerType(False) + +data_set_type_HCS_IMAGE_OVERVIEW = tr.getOrCreateNewDataSetType('HCS_IMAGE_OVERVIEW') +data_set_type_HCS_IMAGE_OVERVIEW.setDescription('Overview High Content Screening Images. Generated from raw images.') +data_set_type_HCS_IMAGE_OVERVIEW.setContainerType(False) + +data_set_type_HCS_IMAGE_RAW = tr.getOrCreateNewDataSetType('HCS_IMAGE_RAW') +data_set_type_HCS_IMAGE_RAW.setDescription('Raw High Content Screening Images') +data_set_type_HCS_IMAGE_RAW.setContainerType(False) + +data_set_type_HCS_IMAGE_SEGMENTATION = tr.getOrCreateNewDataSetType('HCS_IMAGE_SEGMENTATION') +data_set_type_HCS_IMAGE_SEGMENTATION.setDescription('HCS Segmentation Images (overlays).') +data_set_type_HCS_IMAGE_SEGMENTATION.setContainerType(False) + +data_set_type_HCS_IMAGE_CONTAINER_RAW = tr.getOrCreateNewDataSetType('HCS_IMAGE_CONTAINER_RAW') +data_set_type_HCS_IMAGE_CONTAINER_RAW.setDescription('Container for HCS images of different resolutions (raw, overviews, thumbnails).') +data_set_type_HCS_IMAGE_CONTAINER_RAW.setContainerType(True) + +data_set_type_HCS_ANALYSIS_FEATURES_LIST = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_FEATURES_LIST') +data_set_type_HCS_ANALYSIS_FEATURES_LIST.setDescription('The list (or group) of features. The subset of features from feature vectors.') +data_set_type_HCS_ANALYSIS_FEATURES_LIST.setContainerType(False) + +material_type_COMPOUND = tr.getOrCreateNewMaterialType('COMPOUND') +material_type_COMPOUND.setDescription('Compound') + +material_type_CONTROL = tr.getOrCreateNewMaterialType('CONTROL') +material_type_CONTROL.setDescription('Control of a control layout') + +material_type_GENE = tr.getOrCreateNewMaterialType('GENE') +material_type_GENE.setDescription('Gene') + +material_type_SIRNA = tr.getOrCreateNewMaterialType('SIRNA') +material_type_SIRNA.setDescription('Oligo nucleotide') + +prop_type_ANALYSIS_PROCEDURE = tr.getOrCreateNewPropertyType('ANALYSIS_PROCEDURE', DataType.VARCHAR) +prop_type_ANALYSIS_PROCEDURE.setLabel('Analysis procedure') +prop_type_ANALYSIS_PROCEDURE.setManagedInternally(False) +prop_type_ANALYSIS_PROCEDURE.setInternalNamespace(True) + +prop_type_RESOLUTION = tr.getOrCreateNewPropertyType('RESOLUTION', DataType.VARCHAR) +prop_type_RESOLUTION.setLabel('Resolution') +prop_type_RESOLUTION.setManagedInternally(False) +prop_type_RESOLUTION.setInternalNamespace(True) + +prop_type_PLATE_GEOMETRY = tr.getOrCreateNewPropertyType('PLATE_GEOMETRY', DataType.CONTROLLEDVOCABULARY) +prop_type_PLATE_GEOMETRY.setLabel('Plate Geometry') +prop_type_PLATE_GEOMETRY.setManagedInternally(True) +prop_type_PLATE_GEOMETRY.setInternalNamespace(True) +prop_type_PLATE_GEOMETRY.setVocabulary(vocabulary_PLATE_GEOMETRY) + +prop_type_CONTROL = tr.getOrCreateNewPropertyType('CONTROL', DataType.MATERIAL) +prop_type_CONTROL.setLabel('Control') +prop_type_CONTROL.setManagedInternally(True) +prop_type_CONTROL.setInternalNamespace(False) +prop_type_CONTROL.setMaterialType(material_type_CONTROL) + +# Already exists in the database +prop_type_DESCRIPTION = tr.getPropertyType('DESCRIPTION') + +prop_type_GENE = tr.getOrCreateNewPropertyType('GENE', DataType.MATERIAL) +prop_type_GENE.setLabel('Gene') +prop_type_GENE.setManagedInternally(True) +prop_type_GENE.setInternalNamespace(False) +prop_type_GENE.setMaterialType(material_type_GENE) + +prop_type_GENE_SYMBOLS = tr.getOrCreateNewPropertyType('GENE_SYMBOLS', DataType.VARCHAR) +prop_type_GENE_SYMBOLS.setLabel('Gene symbols') +prop_type_GENE_SYMBOLS.setManagedInternally(True) +prop_type_GENE_SYMBOLS.setInternalNamespace(False) + +prop_type_INHIBITOR_OF = tr.getOrCreateNewPropertyType('INHIBITOR_OF', DataType.MATERIAL) +prop_type_INHIBITOR_OF.setLabel('Inhibitor Of') +prop_type_INHIBITOR_OF.setManagedInternally(True) +prop_type_INHIBITOR_OF.setInternalNamespace(False) +prop_type_INHIBITOR_OF.setMaterialType(material_type_GENE) + +prop_type_LIBRARY_ID = tr.getOrCreateNewPropertyType('LIBRARY_ID', DataType.VARCHAR) +prop_type_LIBRARY_ID.setLabel('Library ID') +prop_type_LIBRARY_ID.setManagedInternally(True) +prop_type_LIBRARY_ID.setInternalNamespace(False) + +prop_type_NUCLEOTIDE_SEQUENCE = tr.getOrCreateNewPropertyType('NUCLEOTIDE_SEQUENCE', DataType.VARCHAR) +prop_type_NUCLEOTIDE_SEQUENCE.setLabel('Nucleotide Sequence') +prop_type_NUCLEOTIDE_SEQUENCE.setManagedInternally(True) +prop_type_NUCLEOTIDE_SEQUENCE.setInternalNamespace(False) + +prop_type_SIRNA = tr.getOrCreateNewPropertyType('SIRNA', DataType.MATERIAL) +prop_type_SIRNA.setLabel('siRNA') +prop_type_SIRNA.setManagedInternally(True) +prop_type_SIRNA.setInternalNamespace(False) +prop_type_SIRNA.setMaterialType(material_type_SIRNA) + +assignment_MATERIAL_COMPOUND_DESCRIPTION = tr.assignPropertyType(material_type_COMPOUND, prop_type_DESCRIPTION) +assignment_MATERIAL_COMPOUND_DESCRIPTION.setMandatory(False) +assignment_MATERIAL_COMPOUND_DESCRIPTION.setSection(None) +assignment_MATERIAL_COMPOUND_DESCRIPTION.setPositionInForms(1) + +assignment_MATERIAL_CONTROL_DESCRIPTION = tr.assignPropertyType(material_type_CONTROL, prop_type_DESCRIPTION) +assignment_MATERIAL_CONTROL_DESCRIPTION.setMandatory(False) +assignment_MATERIAL_CONTROL_DESCRIPTION.setSection(None) +assignment_MATERIAL_CONTROL_DESCRIPTION.setPositionInForms(1) + +assignment_SAMPLE_CONTROL_WELL_CONTROL = tr.assignPropertyType(samp_type_CONTROL_WELL, prop_type_CONTROL) +assignment_SAMPLE_CONTROL_WELL_CONTROL.setMandatory(False) +assignment_SAMPLE_CONTROL_WELL_CONTROL.setSection(None) +assignment_SAMPLE_CONTROL_WELL_CONTROL.setPositionInForms(1) + +assignment_MATERIAL_GENE_DESCRIPTION = tr.assignPropertyType(material_type_GENE, prop_type_DESCRIPTION) +assignment_MATERIAL_GENE_DESCRIPTION.setMandatory(False) +assignment_MATERIAL_GENE_DESCRIPTION.setSection(None) +assignment_MATERIAL_GENE_DESCRIPTION.setPositionInForms(2) + +assignment_MATERIAL_GENE_GENE_SYMBOLS = tr.assignPropertyType(material_type_GENE, prop_type_GENE_SYMBOLS) +assignment_MATERIAL_GENE_GENE_SYMBOLS.setMandatory(False) +assignment_MATERIAL_GENE_GENE_SYMBOLS.setSection(None) +assignment_MATERIAL_GENE_GENE_SYMBOLS.setPositionInForms(4) + +assignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION = tr.assignPropertyType(data_set_type_HCS_IMAGE_OVERVIEW, prop_type_RESOLUTION) +assignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION.setMandatory(False) +assignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION.setSection(None) +assignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION.setPositionInForms(1) + +assignment_SAMPLE_PLATE_PLATE_GEOMETRY = tr.assignPropertyType(samp_type_PLATE, prop_type_PLATE_GEOMETRY) +assignment_SAMPLE_PLATE_PLATE_GEOMETRY.setMandatory(True) +assignment_SAMPLE_PLATE_PLATE_GEOMETRY.setSection(None) +assignment_SAMPLE_PLATE_PLATE_GEOMETRY.setPositionInForms(1) + +assignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE = tr.assignPropertyType(material_type_SIRNA, prop_type_NUCLEOTIDE_SEQUENCE) +assignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE.setMandatory(True) +assignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE.setSection(None) +assignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE.setPositionInForms(1) + +assignment_MATERIAL_SIRNA_DESCRIPTION = tr.assignPropertyType(material_type_SIRNA, prop_type_DESCRIPTION) +assignment_MATERIAL_SIRNA_DESCRIPTION.setMandatory(False) +assignment_MATERIAL_SIRNA_DESCRIPTION.setSection(None) +assignment_MATERIAL_SIRNA_DESCRIPTION.setPositionInForms(3) + +assignment_MATERIAL_SIRNA_INHIBITOR_OF = tr.assignPropertyType(material_type_SIRNA, prop_type_INHIBITOR_OF) +assignment_MATERIAL_SIRNA_INHIBITOR_OF.setMandatory(True) +assignment_MATERIAL_SIRNA_INHIBITOR_OF.setSection(None) +assignment_MATERIAL_SIRNA_INHIBITOR_OF.setPositionInForms(4) + +assignment_MATERIAL_SIRNA_LIBRARY_ID = tr.assignPropertyType(material_type_SIRNA, prop_type_LIBRARY_ID) +assignment_MATERIAL_SIRNA_LIBRARY_ID.setMandatory(False) +assignment_MATERIAL_SIRNA_LIBRARY_ID.setSection(None) +assignment_MATERIAL_SIRNA_LIBRARY_ID.setPositionInForms(5) + +assignment_SAMPLE_SIRNA_WELL_SIRNA = tr.assignPropertyType(samp_type_SIRNA_WELL, prop_type_SIRNA) +assignment_SAMPLE_SIRNA_WELL_SIRNA.setMandatory(False) +assignment_SAMPLE_SIRNA_WELL_SIRNA.setSection(None) +assignment_SAMPLE_SIRNA_WELL_SIRNA.setPositionInForms(1) + +assignment_SAMPLE_SIRNA_WELL_GENE = tr.assignPropertyType(samp_type_SIRNA_WELL, prop_type_GENE) +assignment_SAMPLE_SIRNA_WELL_GENE.setMandatory(False) +assignment_SAMPLE_SIRNA_WELL_GENE.setSection(None) +assignment_SAMPLE_SIRNA_WELL_GENE.setPositionInForms(2) diff --git a/js-test/servers/common/core-plugins/screening/4/dss/data-sources/imaging-db/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/data-sources/imaging-db/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..6897aa06ba42e062b633d980acd924f2420331b6 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/data-sources/imaging-db/plugin.properties @@ -0,0 +1,25 @@ +# +# Data source for the database storing image meta data. +# +# Variables: +# imaging-database.url-host-part +# The host and optionally port. Default is 'localhost'. +# imaging-database.kind +# Second part of the database name. Default value is 'prod'. +# screening-sql-root-folder +# Path to root folder of SQL scripts. Default value is an empty string. +# +version-holder-class = ch.systemsx.cisd.openbis.dss.etl.ImagingDatabaseVersionHolder +databaseEngineCode = postgresql +basicDatabaseName = imaging +urlHostPart = ${imaging-database.url-host-part:localhost} +databaseKind = ${imaging-database.kind:prod} +scriptFolder = ${screening-sql-root-folder:}sql/imaging +owner = +password = +# Credentials of a database user which is able to create a new database or roles in it. +# Leave empty to use the db engines defaults. +# Used only during the first start of the server or when server is upgraded to a new version. +adminUser = +adminPassword = + diff --git a/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..aeff397fb86ad4e2fb72e967d993028e0be3822b --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/hcs-dropbox/hcs-dropbox.py @@ -0,0 +1,84 @@ +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import ImageMetadata +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry + +SPACE_CODE = "TEST" +PROJECT_CODE = "TEST-PROJECT" +PROJECT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s" % vars() +EXPERIMENT_CODE = "DEMO-EXP-HCS" +EXPERIMENT_ID = "/%(SPACE_CODE)s/%(PROJECT_CODE)s/%(EXPERIMENT_CODE)s" % vars() + +PLATE_CODE = "PLATE1" +PLATE_ID = "/%(SPACE_CODE)s/%(PLATE_CODE)s" % vars() +PLATE_GEOMETRY_PROPERTY_CODE = "$PLATE_GEOMETRY" +PLATE_GEOMETRY = "384_WELLS_16X24" + + +def create_space_if_needed(transaction): + space = transaction.getSpace(SPACE_CODE) + if None == space: + space = transaction.createNewSpace(SPACE_CODE, None) + space.setDescription("A demo space") + +def create_project_if_needed(transaction): + project = transaction.getProject(PROJECT_ID) + if None == project: + create_space_if_needed(transaction) + project = transaction.createNewProject(PROJECT_ID) + project.setDescription("A demo project") + +def create_experiment_if_needed(transaction): + """ Get the specified experiment or register it if necessary """ + exp = transaction.getExperiment(EXPERIMENT_ID) + if None == exp: + create_project_if_needed(transaction) + print 'Creating new experiment : ' + EXPERIMENT_ID + exp = transaction.createNewExperiment(EXPERIMENT_ID, 'SIRNA_HCS') + + return exp + +def create_plate_if_needed(transaction): + """ Get the specified sample or register it if necessary """ + + samp = transaction.getSample(PLATE_ID) + + if None == samp: + exp = create_experiment_if_needed(transaction) + samp = transaction.createNewSample(PLATE_ID, 'PLATE') + samp.setPropertyValue(PLATE_GEOMETRY_PROPERTY_CODE, PLATE_GEOMETRY) + samp.setExperiment(exp) + + return samp + + +class MyImageDataSetConfig(SimpleImageDataConfig): + def extractImageMetadata(self, imagePath): + + basename = os.path.splitext(imagePath)[0] + (plate, well, tile, channelCode) = basename.split("_") + + image_tokens = ImageMetadata() + image_tokens.well = well + try: + image_tokens.tileNumber = int(tile) + except ValueError: + raise Exception("Cannot parse field number from '" + tile + "' in '" + basename + "' file name.") + + image_tokens.channelCode = channelCode + return image_tokens + + def getTileGeometry(self, imageTokens, maxTileNumber): + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3) + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = MyImageDataSetConfig() + imageDataset.setRawImageDatasetType() + imageDataset.setGenerateThumbnails(True) + imageDataset.setUseImageMagicToGenerateThumbnails(False) + plate = create_plate_if_needed(transaction) + dataset = transaction.createNewImageDataSet(imageDataset, incoming); + dataset.setSample(plate) + transaction.moveFile(incoming.getPath(), dataset); diff --git a/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/hcs-dropbox/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/hcs-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..9e4417bc5b6c1e72de88a5a7c7140f6ef6f05c6a --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/hcs-dropbox/plugin.properties @@ -0,0 +1,13 @@ +# +# Drop box for HCS data sets +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-hcs +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = hcs-dropbox.py +storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.data-source = imaging-db +storage-processor.define-channels-per-experiment = false diff --git a/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/simple-dropbox/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/simple-dropbox/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0c9653f03f362fbf44611691ad53ec344c73c009 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/simple-dropbox/plugin.properties @@ -0,0 +1,12 @@ +# +# Simple drop box which registers any file/folder +# +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-simple +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = simple-dropbox.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/simple-dropbox/simple-dropbox.py b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/simple-dropbox/simple-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..9067fe717ed98c987c8b56a8ef0ebc71cc83dc17 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/drop-boxes/simple-dropbox/simple-dropbox.py @@ -0,0 +1,13 @@ +#! /usr/bin/env python +def process(transaction): + expid = "/TEST/TEST-PROJECT/DEMO-EXP-SIMPLE" + exp = transaction.getExperiment(expid) + + if None == exp: + exp = transaction.createNewExperiment(expid, "TEST-EXPERIMENT") + + dataSet = transaction.createNewDataSet() + + dataSet.setDataSetType("UNKNOWN") + dataSet.setExperiment(exp) + transaction.moveFile(transaction.getIncoming().getAbsolutePath(), dataSet) diff --git a/js-test/servers/common/core-plugins/screening/4/dss/image-overview-plugins/microscopy-image-overview/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/image-overview-plugins/microscopy-image-overview/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..4bb0362520407453241cee719cb6ddaa3ba9753a --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/image-overview-plugins/microscopy-image-overview/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.MergingImagesDownloadServlet +dataset-types = MICROSCOPY_IMAGE diff --git a/js-test/servers/common/core-plugins/screening/4/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0376c8e51cf99da41257f764554ed8525580b596 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/maintenance-tasks/imaging-db-clean-up/plugin.properties @@ -0,0 +1,8 @@ +# +# Maintenance task which does a database clean up by deleting all data sets deleted in application server. +# This task assumes that data source 'imaging-db' has been defined. +# +class = ch.systemsx.cisd.openbis.dss.etl.DeleteFromImagingDBMaintenanceTask +# specified in seconds. Here : every day +interval = 86400 +data-source = imaging-db diff --git a/js-test/servers/common/core-plugins/screening/4/dss/reporting-plugins/default-plate-image-analysis/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/reporting-plugins/default-plate-image-analysis/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..349c4619c6a5579292141438761dcd8864d5ee22 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/reporting-plugins/default-plate-image-analysis/plugin.properties @@ -0,0 +1,4 @@ +label = Image Analysis Results +class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.ImageAnalysisMergedRowsReportingPlugin +dataset-types = HCS_ANALYSIS_.*WELL_FEATURES +properties-file = diff --git a/js-test/servers/common/core-plugins/screening/4/dss/reporting-plugins/feature-lists-aggregation-service/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/reporting-plugins/feature-lists-aggregation-service/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ca45c2a27cfed07f0a7611f3e972738a6b25c6ac --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/reporting-plugins/feature-lists-aggregation-service/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.FeatureListsAggregationServicePlugin +label = Features Lists \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/screening/4/dss/services/screening-dss-api-json/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/services/screening-dss-api-json/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..ebfa05eeff69cf7bdd07a54ef649e9be3cd1ab8f --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/services/screening-dss-api-json/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.DssScreeningApiJsonServlet +path = /rmi-datastore-server-screening-api-v1.json/* diff --git a/js-test/servers/common/core-plugins/screening/4/dss/services/screening-dss-api/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/services/screening-dss-api/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..dc5e7415dae53f54739ef76efead59b349005b63 --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/services/screening-dss-api/plugin.properties @@ -0,0 +1,2 @@ +class = ch.systemsx.cisd.openbis.dss.generic.server.DssScreeningApiServlet +path = /rmi-datastore-server-screening-api-v1/* diff --git a/js-test/servers/common/core-plugins/screening/4/dss/services/screening-images/plugin.properties b/js-test/servers/common/core-plugins/screening/4/dss/services/screening-images/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..fc95d81dad3e32d0a38027e13a7e7c62a867453f --- /dev/null +++ b/js-test/servers/common/core-plugins/screening/4/dss/services/screening-images/plugin.properties @@ -0,0 +1,5 @@ +# +# Image service +# +class = ch.systemsx.cisd.openbis.dss.generic.server.MergingImagesDownloadServlet +path = /datastore_server_screening/* diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-feature-list/data-set-handler-feature-list.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-feature-list/data-set-handler-feature-list.py new file mode 100644 index 0000000000000000000000000000000000000000..cf84ae2302560f25f1efc4c841701fea92404349 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-feature-list/data-set-handler-feature-list.py @@ -0,0 +1,19 @@ +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v2 import FeatureListDataConfig + +def process(transaction): + + featureContainerDataSet = transaction.getDataSetForUpdate("20130412153659994-391") + + config = FeatureListDataConfig() + config.setName("NUMBER_FEATURE_LIST"); + config.setFeatureList(["row number", "column number"]) + config.setContainerDataSet(featureContainerDataSet) + + transaction.createNewFeatureListDataSet(config) + + config = FeatureListDataConfig() + config.setName("BARCODE_AND_STATE_FEATURE_LIST"); + config.setFeatureList(["barcode", "STATE"]) + config.setContainerDataSet(featureContainerDataSet) + + transaction.createNewFeatureListDataSet(config) diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-feature-list/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-feature-list/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..4dd01a14549254af34e4a285953460198e632c63 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-feature-list/plugin.properties @@ -0,0 +1,18 @@ +incoming-dir = ${root-dir}/incoming-platonic-feature-list +incoming-dir-create = true +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-feature-list.py +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-microscope/data-set-handler-microscope.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-microscope/data-set-handler-microscope.py new file mode 100644 index 0000000000000000000000000000000000000000..28033903f5d3be8475762600c5b86e34b8903ac5 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-microscope/data-set-handler-microscope.py @@ -0,0 +1,77 @@ +#!/usr/bin/env python + +""" +An Jython dropbox for importing microscopy image datasets produced by the scripts that generate platonic microscopy data. + +The folder loaded to the dropbox folder should have the same name as the sample that the data will be attached to. +""" + +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig, ImageMetadata, Location +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry + + +class ImageDataSetFlexible(SimpleImageDataConfig): + """ + Extracts tile number, channel code and well code for a given relative path to an image. + Will be called for each file found in the incoming directory which has the allowed image extension. + + Example file name: bDZ01-1A_w_s3_z123_t321_cGFP + Returns: + ImageMetadata + """ + def extractImageMetadata(self, imagePath): + image_tokens = ImageMetadata() + + basename = os.path.splitext(imagePath)[0] + # + token_dict = {} + for token in basename.split("_"): + token_dict[token[:1]] = token[1:] + + image_tokens.well = None + image_tokens.tileNumber = 1 + image_tokens.channelCode = token_dict["c"] + image_tokens.timepoint = float(token_dict["t"]) + image_tokens.depth = float(token_dict["z"]) + return image_tokens + + """ + Overrides the default implementation which returns (1, maxTileNumber) geometry. + + Calculates the width and height of the matrix of tiles (a.k.a. fields or sides) in the well. + + Parameter imageMetadataList: a list of metadata for each encountered image + Parameter maxTileNumber: the biggest tile number among all encountered images + Returns: + Geometry + """ + def getTileGeometry(self, imageTokens, maxTileNumber): + return Geometry.createFromRowColDimensions(1, 1); + + """ + Overrides the default implementation which does the same thing (to demonstrate how this can be done). + + For a given tile number and tiles geometry returns (x,y) which describes where the tile is + located on the well. + + Parameter tileNumber: number of the tile + Parameter tileGeometry: the geometry of the well matrix + Returns: + Location + """ + def getTileCoordinates(self, tileNumber, tileGeometry): + return Location(1, 1) + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = ImageDataSetFlexible() + imageDataset.setMicroscopyData(True) + imageDataset.setDataSetType("MICROSCOPY_IMG") + imageDataset.addGeneratedImageRepresentationWithResolution('128x128') + imageDataset.setMeasuredData(True) + imageDataset.setPlate("PLATONIC", incoming.getName()) + dataSet = transaction.createNewImageDataSet(imageDataset, incoming) + transaction.moveFile(incoming.getPath(), dataSet) + diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-microscope/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-microscope/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..962ece8e146e29b4645a2122ac17597be3817e97 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-microscope/plugin.properties @@ -0,0 +1,21 @@ +incoming-dir = ${incoming-root-dir}/incoming-platonic-microscope +incoming-data-completeness-condition = auto-detection + +# The extractor class to use for code extraction +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-microscope.py +staging-dir = ${incoming-root-dir} + +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.MicroscopyStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-features/data-set-handler-plate-features.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-features/data-set-handler-plate-features.py new file mode 100644 index 0000000000000000000000000000000000000000..f754f388ecffd50b804dad2ae5a65b6c0804e90f --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-features/data-set-handler-plate-features.py @@ -0,0 +1,33 @@ +#!/usr/bin/env python + +""" +An Jython dropbox for importing a CSV file with feature vectors. +""" + +import os +from java.util import Properties +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v2 import SimpleFeatureVectorDataConfig + +def getConfigurationProperties(): + config = Properties() + config.setProperty("separator", ",") + config.setProperty("well-name-row", "Well") + config.setProperty("well-name-col", "Well") + config.setProperty("well-name-col-is-alphanum", "true") + return config + +def process(transaction): + space="PLATONIC" + incoming = transaction.incoming + splittedFileName = incoming.getName().split('.') + plateCode = splittedFileName[0] + sample = transaction.getSample("/" + space + "/" + plateCode) + configProps = getConfigurationProperties() + config = SimpleFeatureVectorDataConfig(configProps) + dataset = transaction.createNewFeatureVectorDataSet(config, incoming) + dataset.setFileFormatType('CSV') + if len(splittedFileName) > 1: + dataset.setPropertyValue("$ANALYSIS_PROCEDURE", splittedFileName[1]) + dataset.setSample(sample) + transaction.moveFile(incoming.getPath(), dataset) + diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-features/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-features/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..5e6223dda8c49aa18e3c513db784e47a0c0e303c --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-features/plugin.properties @@ -0,0 +1,23 @@ +# The dropbox for idealized data -- data that doesn't represent real screens, +# rather data used for testing purposes +incoming-dir = ${incoming-root-dir}/incoming-platonic-plate-features +incoming-data-completeness-condition = auto-detection + +# The extractor class to use for code extraction +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-plate-features.py +staging-dir = ${incoming-root-dir} + +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-overlays/data-set-handler-plate-overlays.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-overlays/data-set-handler-plate-overlays.py new file mode 100644 index 0000000000000000000000000000000000000000..90e150c845a6734c2becf8396a19f4770dc17399 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-overlays/data-set-handler-plate-overlays.py @@ -0,0 +1,95 @@ +#!/usr/bin/env python + +""" +An Jython dropbox for importing HCS image datasets produced by the scripts that generate platonic screening data. + +The folder loaded to the dropbox folder should have the same name as the plate that the data will be attached to. +""" + +import os +from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria, SearchSubCriteria +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig, ImageMetadata, Location, Channel, ChannelColorComponent +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry + + +class ImageDataSetFlexible(SimpleImageDataConfig): + """ + Extracts tile number, channel code and well code for a given relative path to an image. + Will be called for each file found in the incoming directory which has the allowed image extension. + + Example file name: bDZ01-1A_wD17_s3_z123_t321_cGFP + Returns: + ImageMetadata + """ + def extractImageMetadata(self, imagePath): + image_tokens = ImageMetadata() + + basename = os.path.splitext(imagePath)[0] + # + token_dict = {} + for token in basename.split("_"): + token_dict[token[:1]] = token[1:] + + image_tokens.well = token_dict["w"] + fieldText = token_dict["s"] + try: + image_tokens.tileNumber = int(fieldText) + except ValueError: + raise Exception("Cannot parse field number from '" + fieldText + "' in '" + basename + "' file name.") + + image_tokens.channelCode = token_dict["c"] + return image_tokens + + """ + Overrides the default implementation which returns (1, maxTileNumber) geometry. + + Calculates the width and height of the matrix of tiles (a.k.a. fields or sides) in the well. + + Parameter imageMetadataList: a list of metadata for each encountered image + Parameter maxTileNumber: the biggest tile number among all encountered images + Returns: + Geometry + """ + def getTileGeometry(self, imageTokens, maxTileNumber): + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3); + + """ + Overrides the default implementation which does the same thing (to demonstrate how this can be done). + + For a given tile number and tiles geometry returns (x,y) which describes where the tile is + located on the well. + + Parameter tileNumber: number of the tile + Parameter tileGeometry: the geometry of the well matrix + Returns: + Location + """ + def getTileCoordinates(self, tileNumber, tileGeometry): + columns = tileGeometry.getWidth() + row = ((tileNumber - 1) / columns) + 1 + col = ((tileNumber - 1) % columns) + 1 + return Location(row, col) + +def process(transaction): + incoming = transaction.getIncoming() + space = "PLATONIC" + if incoming.isDirectory(): + imageDataset = ImageDataSetFlexible() + imageDataset.setSegmentationImageDatasetType() + splittedDataSetFolderName = incoming.getName().split('.') + plateName = splittedDataSetFolderName[0] + imageDataset.setPlate(space, plateName) + newDataset = transaction.createNewImageDataSet(imageDataset, incoming); + if len(splittedDataSetFolderName) > 2: + newDataset.setPropertyValue("$ANALYSIS_PROCEDURE", splittedDataSetFolderName[2]) + searchService = transaction.getSearchService() + searchCriteria = SearchCriteria() + searchCriteria.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, "HCS_IMAGE_RAW")) + sampleCriteria = SearchCriteria() + sampleCriteria.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.SPACE, space)) + sampleCriteria.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, plateName)) + searchCriteria.addSubCriteria(SearchSubCriteria.createSampleCriteria(sampleCriteria)) + dataSets = searchService.searchForDataSets(searchCriteria) + if dataSets.size() > 0: + newDataset.setParentDatasets([dataSets[0].getDataSetCode()]) + transaction.moveFile(incoming.getPath(), newDataset) diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-overlays/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-overlays/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..185ae8ca637434ba4bb243d8e4f8afa3c975cbca --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-overlays/plugin.properties @@ -0,0 +1,23 @@ +# The dropbox for idealized data -- data that doesn't represent real screens, +# rather data used for testing purposes +incoming-dir = ${incoming-root-dir}/incoming-platonic-plate-overlays +incoming-data-completeness-condition = auto-detection + +# The extractor class to use for code extraction +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-plate-overlays.py +staging-dir = ${incoming-root-dir} + +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-series/data-set-handler-plate-series.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-series/data-set-handler-plate-series.py new file mode 100644 index 0000000000000000000000000000000000000000..80bea897b4592783eef28bc697d4303d462333ef --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-series/data-set-handler-plate-series.py @@ -0,0 +1,89 @@ +#!/usr/bin/env python + +""" +An Jython dropbox for importing HCS image datasets produced by the scripts that generate platonic screening data. + +The folder loaded to the dropbox folder should have the same name as the plate that the data will be attached to. +""" + +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig, ImageMetadata, Location, Channel, ChannelColor, ChannelColorComponent +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations import ImageTransformationBuffer +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails import ResolutionBasedThumbnailsConfiguration + + +class ImageDataSetFlexible(SimpleImageDataConfig): + def extractImageMetadata(self, imagePath): + """ + Extracts tile number, channel code and well code for a given relative path to an image. + Will be called for each file found in the incoming directory which has the allowed image extension. + + Example file name: bDZ01-1A_wD17_s3_z123_t321_cGFP + Returns: + ImageMetadata + """ + image_tokens = ImageMetadata() + + basename = os.path.splitext(imagePath)[0] + # + token_dict = {} + for token in basename.split("_"): + token_dict[token[:1]] = token[1:] + + image_tokens.well = token_dict["w"] + fieldText = token_dict["s"] + try: + image_tokens.tileNumber = int(fieldText) + except ValueError: + raise Exception("Cannot parse field number from '" + fieldText + "' in '" + basename + "' file name.") + + image_tokens.channelCode = token_dict["c"] + image_tokens.timepoint = float(token_dict["t"]) + return image_tokens + + def getTileGeometry(self, imageTokens, maxTileNumber): + """ + Overrides the default implementation which returns (1, maxTileNumber) geometry. + + Calculates the width and height of the matrix of tiles (a.k.a. fields or sides) in the well. + + Parameter imageMetadataList: a list of metadata for each encountered image + Parameter maxTileNumber: the biggest tile number among all encountered images + Returns: + Geometry + """ + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3); + + def getTileCoordinates(self, tileNumber, tileGeometry): + """ + Overrides the default implementation which does the same thing (to demonstrate how this can be done). + + For a given tile number and tiles geometry returns (x,y) which describes where the tile is + located on the well. + + Parameter tileNumber: number of the tile + Parameter tileGeometry: the geometry of the well matrix + Returns: + Location + """ + columns = tileGeometry.getWidth() + row = ((tileNumber - 1) / columns) + 1 + col = ((tileNumber - 1) % columns) + 1 + return Location(row, col) + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = ImageDataSetFlexible() + imageDataset.setRawImageDatasetType() + imageDataset.setPlate("PLATONIC", incoming.getName()) + imageRegistrationDetails = factory.createImageRegistrationDetails(imageDataset, incoming) + datasetInfo = imageRegistrationDetails.getDataSetInformation() + channels = [ Channel(code, code) for code in ["DAPI", "GFP", "Cy5"]] + colorComponents = [ ChannelColorComponent.BLUE, ChannelColorComponent.GREEN, ChannelColorComponent.RED] + + datasetInfo.setChannels(channels, colorComponents) + + dataSet = transaction.createNewImageDataSet(imageDataset, incoming) + transaction.moveFile(incoming.getPath(), dataSet) diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-series/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-series/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..cb2950d4a9f297aa3261e1ee3533c77372c9eafd --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-series/plugin.properties @@ -0,0 +1,23 @@ +# The dropbox for idealized data -- data that doesn't represent real screens, +# rather data used for testing purposes +incoming-dir = ${incoming-root-dir}/incoming-platonic-plate-series +incoming-data-completeness-condition = auto-detection + +# The extractor class to use for code extraction +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-plate-series.py +staging-dir = ${incoming-root-dir} + +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-splitted/data-set-handler-plate-splitted.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-splitted/data-set-handler-plate-splitted.py new file mode 100644 index 0000000000000000000000000000000000000000..f24957373237ada3975cd5fe88d1c27ba4416487 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-splitted/data-set-handler-plate-splitted.py @@ -0,0 +1,88 @@ +#!/usr/bin/env python + +""" +An Jython dropbox for importing HCS image datasets produced by the scripts that generate platonic screening data. + +The folder loaded to the dropbox folder should have the same name as the plate that the data will be attached to. +""" + +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig, ImageMetadata, Location, Channel, ChannelColor, ChannelColorComponent +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry + + +class ImageDataSetFlexible(SimpleImageDataConfig): + """ + Extracts tile number, channel code and well code for a given relative path to an image. + Will be called for each file found in the incoming directory which has the allowed image extension. + + Example file name: bDZ01-1A_wD17_s3_z123_t321_cGFP + Returns: + ImageMetadata + """ + def extractImageMetadata(self, imagePath): + image_tokens = ImageMetadata() + + basename = os.path.splitext(imagePath)[0] + # + token_dict = {} + for token in basename.split("_"): + token_dict[token[:1]] = token[1:] + + image_tokens.well = token_dict["w"] + fieldText = token_dict["s"] + try: + image_tokens.tileNumber = int(fieldText) + except ValueError: + raise Exception("Cannot parse field number from '" + fieldText + "' in '" + basename + "' file name.") + + image_tokens.channelCode = token_dict["c"] + return image_tokens + + """ + Overrides the default implementation which returns (1, maxTileNumber) geometry. + + Calculates the width and height of the matrix of tiles (a.k.a. fields or sides) in the well. + + Parameter imageMetadataList: a list of metadata for each encountered image + Parameter maxTileNumber: the biggest tile number among all encountered images + Returns: + Geometry + """ + def getTileGeometry(self, imageTokens, maxTileNumber): + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3); + + """ + Overrides the default implementation which does the same thing (to demonstrate how this can be done). + + For a given tile number and tiles geometry returns (x,y) which describes where the tile is + located on the well. + + Parameter tileNumber: number of the tile + Parameter tileGeometry: the geometry of the well matrix + Returns: + Location + """ + def getTileCoordinates(self, tileNumber, tileGeometry): + columns = tileGeometry.getWidth() + row = ((tileNumber - 1) / columns) + 1 + col = ((tileNumber - 1) % columns) + 1 + return Location(row, col) + + def getChannelColor(self, channelCode): + # codes should be in upper case + dict = { "GFP" : ChannelColor.GREEN, "DAPI" : ChannelColor.BLUE, "CY3" : ChannelColor.RED_BLUE, "CY5" : ChannelColor.RED } + if channelCode in dict: + return dict[channelCode] + else: + return None + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = ImageDataSetFlexible() + imageDataset.setRawImageDatasetType() + imageDataset.setPlate("PLATONIC", incoming.getName()) + dataSet = transaction.createNewImageDataSet(imageDataset, incoming) + transaction.moveFile(incoming.getPath(), dataSet) + \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-splitted/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-splitted/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..7c7157b796e633ef8e9eb24cfa2bd684d4b66fb1 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate-splitted/plugin.properties @@ -0,0 +1,23 @@ +# The dropbox for idealized data -- data that doesn't represent real screens, +# rather data used for testing purposes +incoming-dir = ${incoming-root-dir}/incoming-platonic-plate-splitted +incoming-data-completeness-condition = auto-detection + +# The extractor class to use for code extraction +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-plate-splitted.py +staging-dir = ${incoming-root-dir} + +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate/data-set-handler-plate.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate/data-set-handler-plate.py new file mode 100644 index 0000000000000000000000000000000000000000..f82495d8f29df66826151d10442d4d5015d22026 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate/data-set-handler-plate.py @@ -0,0 +1,118 @@ +#!/usr/bin/env python + +""" +An Jython dropbox for importing HCS image datasets produced by the scripts that generate platonic screening data. + +The folder loaded to the dropbox folder should have the same name as the plate that the data will be attached to. +""" + +import os +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 import SimpleImageDataConfig, ImageMetadata, Location, Channel, ChannelColor, ChannelColorComponent +from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto import Geometry +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations import ImageTransformationBuffer +from ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails import ResolutionBasedThumbnailsConfiguration + + +class ImageDataSetFlexible(SimpleImageDataConfig): + def extractImageMetadata(self, imagePath): + """ + Extracts tile number, channel code and well code for a given relative path to an image. + Will be called for each file found in the incoming directory which has the allowed image extension. + + Example file name: bDZ01-1A_wD17_s3_z123_t321_cGFP + Returns: + ImageMetadata + """ + image_tokens = ImageMetadata() + + basename = os.path.splitext(imagePath)[0] + # + token_dict = {} + for token in basename.split("_"): + token_dict[token[:1]] = token[1:] + + image_tokens.well = token_dict["w"] + fieldText = token_dict["s"] + try: + image_tokens.tileNumber = int(fieldText) + except ValueError: + raise Exception("Cannot parse field number from '" + fieldText + "' in '" + basename + "' file name.") + + image_tokens.channelCode = token_dict["c"] + return image_tokens + + def getTileGeometry(self, imageTokens, maxTileNumber): + """ + Overrides the default implementation which returns (1, maxTileNumber) geometry. + + Calculates the width and height of the matrix of tiles (a.k.a. fields or sides) in the well. + + Parameter imageMetadataList: a list of metadata for each encountered image + Parameter maxTileNumber: the biggest tile number among all encountered images + Returns: + Geometry + """ + return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3); + + def getTileCoordinates(self, tileNumber, tileGeometry): + """ + Overrides the default implementation which does the same thing (to demonstrate how this can be done). + + For a given tile number and tiles geometry returns (x,y) which describes where the tile is + located on the well. + + Parameter tileNumber: number of the tile + Parameter tileGeometry: the geometry of the well matrix + Returns: + Location + """ + columns = tileGeometry.getWidth() + row = ((tileNumber - 1) / columns) + 1 + col = ((tileNumber - 1) % columns) + 1 + return Location(row, col) + + +def getAvailableChannelTransformations(): + """ + Create a collection of transformations that are applicable to the image + """ + transforms = ImageTransformationBuffer() + transforms.appendImageMagicConvert("-edge 1", "Edge detection") + transforms.appendImageMagicConvert("-radial-blur 30", "Radial Blur") + transforms.appendImageMagicConvert("-blur 3x.7 -solarize 50% -level 50%,0", "Fuzzy") + transforms.appendImageMagicConvert("-shade 0x45", "3D 1") + transforms.appendImageMagicConvert("-shade 90x60", "3D 2") + transforms.appendImageMagicConvert("-blur 0x3 -shade 120x45 -normalize", "3D 3") + transforms.appendImageMagicConvert("-motion-blur 0x12+45", "Motion Blur") + transforms.appendImageMagicConvert("-fft -delete 1 -auto-level -evaluate log 100000", "FFT") + + return transforms.getTransformations() + +def process(transaction): + incoming = transaction.getIncoming() + if incoming.isDirectory(): + imageDataset = ImageDataSetFlexible() + imageDataset.setRawImageDatasetType() + imageDataset.setPlate("PLATONIC", incoming.getName()) + transforms = getAvailableChannelTransformations() + # imageDataset.setGenerateImageRepresentationsWithScaleFactors([0.25, 0.5]) + # imageDataset.setGenerateImageRepresentationsUsingImageResolutions(['128x128', '256x256']) + for resolution in ['64x64', '128x128']: + representation = imageDataset.addGeneratedImageRepresentationWithResolution(resolution) + representation.setFileFormat('JPEG') + for channel in ["DAPI", "GFP", "Cy5"]: + representation.setTransformation(channel, transforms[1].getCode()) + imageDataset.addGeneratedImageRepresentationWithResolution('256x256') + + channels = [ Channel(code, code) for code in ["DAPI", "GFP", "Cy5"]] + colorComponents = [ ChannelColorComponent.BLUE, ChannelColorComponent.GREEN, ChannelColorComponent.RED] + + # Add transforms to the channels + for channel in channels: + channel.setAvailableTransformations(transforms) + + imageDataset.setChannels(channels, colorComponents) + + # Create the data set + dataSet = transaction.createNewImageDataSet(imageDataset, incoming) + transaction.moveFile(incoming.getPath(), dataSet) \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0412a725ce3d3a373bd261bf8c40a2f82e58df33 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-plate/plugin.properties @@ -0,0 +1,23 @@ +# The dropbox for idealized data -- data that doesn't represent real screens, +# rather data used for testing purposes +incoming-dir = ${incoming-root-dir}/incoming-platonic-plate +incoming-data-completeness-condition = auto-detection + +# The extractor class to use for code extraction +top-level-data-set-handler = ch.systemsx.cisd.openbis.dss.etl.jython.v2.JythonPlateDataSetHandlerV2 +script-path = data-set-handler-plate.py +staging-dir = ${incoming-root-dir} + +storage-processor = ch.systemsx.cisd.etlserver.DispatcherStorageProcessor +storage-processor.processors = images, analysis +# --- images - accepts all image datasets registrations +storage-processor.images = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +storage-processor.images.data-source = imaging-db +# --- analysis - accepts all other datasets (and assumes they are single CSV files) +storage-processor.analysis = ch.systemsx.cisd.openbis.dss.etl.featurevector.FeatureVectorStorageProcessor +storage-processor.analysis.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +storage-processor.analysis.data-source = imaging-db +storage-processor.analysis.separator = , +storage-processor.analysis.well-name-row = Well +storage-processor.analysis.well-name-col = Well +storage-processor.analysis.well-name-col-is-alphanum = true diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-simple/data-set-handler-simple.py b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-simple/data-set-handler-simple.py new file mode 100644 index 0000000000000000000000000000000000000000..b696d4b9779493d74d56ddc6949442e3bd8f2761 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-simple/data-set-handler-simple.py @@ -0,0 +1,7 @@ +#! /usr/bin/env python +def process(transaction): + exp = transaction.getExperiment("/TEST/TEST-PROJECT/TEST-EXPERIMENT-2") + dataSet = transaction.createNewDataSet() + dataSet.setDataSetType("UNKNOWN") + dataSet.setExperiment(exp) + transaction.moveFile(transaction.getIncoming().getAbsolutePath(), dataSet) diff --git a/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-simple/plugin.properties b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-simple/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..72aaa528ef42f1cdf31a812843124c1b555270ea --- /dev/null +++ b/js-test/servers/common/core-plugins/tests-data-import/1/dss/drop-boxes/data-set-handler-simple/plugin.properties @@ -0,0 +1,12 @@ +# +# Simple drop box which registers any file/folder +# +# +# Variables: +# incoming-root-dir +# Path to the directory which contains incoming directories for drop boxes. +incoming-dir = ${incoming-root-dir}/incoming-platonic-simple +incoming-data-completeness-condition = auto-detection +top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2 +script-path = data-set-handler-simple.py +storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor diff --git a/js-test/servers/common/core-plugins/tests-data/tests-data.zip b/js-test/servers/common/core-plugins/tests-data/tests-data.zip new file mode 100644 index 0000000000000000000000000000000000000000..8259e5468a58f800616df04627e884ffb4fc04ae Binary files /dev/null and b/js-test/servers/common/core-plugins/tests-data/tests-data.zip differ diff --git a/js-test/servers/common/core-plugins/tests/1/as/query-databases/test-query-database/plugin.properties b/js-test/servers/common/core-plugins/tests/1/as/query-databases/test-query-database/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..0e6f491165ab807e429baa649cf046d985cb6738 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/query-databases/test-query-database/plugin.properties @@ -0,0 +1,5 @@ +label = Test Query Database +database-driver = org.postgresql.Driver +database-url = jdbc:postgresql://localhost/openbis_${database.kind} +database-username = openbis_readonly +database-password = diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/common-test.js b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/common-test.js new file mode 100644 index 0000000000000000000000000000000000000000..15497eab2defbaae2b0f3f897a35cc9bb5252570 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/common-test.js @@ -0,0 +1,137 @@ +var createFacade = function(action, url, timeoutOrNull){ + stop(); + + var facade = new openbis(url); + + facade.close = function(){ + facade.logout(function(){ + facade.closed = true; + }); + }; + + action(facade); + + var timeout = timeoutOrNull ? timeoutOrNull : 30000; + var checkInterval = 100; + var intervalTotal = 0; + + var startWhenClosed = function(){ + if(facade.closed){ + start(); + }else{ + intervalTotal += checkInterval; + + if(intervalTotal < timeout){ + setTimeout(startWhenClosed, checkInterval); + }else{ + start(); + } + } + }; + + startWhenClosed(); +} + +var createFacadeAndLoginForUserAndPassword = function(user, password, action, url, timeoutOrNull){ + createFacade(function(facade){ + facade.login(user, password, function(response){ + if(!response.error){ + action(facade); + } + }); + }, url, timeoutOrNull); +} + +var createSearchCriteriaForCodes = function(codes){ + var clauses = []; + + $.each(codes, function(index, code){ + clauses.push({"@type":"AttributeMatchClause", + attribute : "CODE", + fieldType : "ATTRIBUTE", + desiredValue : code + }); + }); + + var searchCriteria = { + "@type" : "SearchCriteria", + matchClauses : clauses, + operator : "MATCH_ANY_CLAUSES" + }; + + return searchCriteria; +} + +var assertArrays = function(array1, array2, msg){ + deepEqual(array1.sort(), array2.sort(), msg); +} + +var assertObjectsCount = function(objects, count){ + equal(objects.length, count, 'Got ' + count + ' object(s)'); +} + +var assertObjectsWithValues = function(objects, propertyName, propertyValues){ + var values = {}; + + $.each(objects, function(index, object){ + var value = object[propertyName]; + if(value in values == false){ + values[value] = true; + } + }); + + deepEqual(Object.keys(values).sort(), propertyValues.sort(), 'Objects have correct ' + propertyName + ' values') +} + +var assertObjectsWithValuesFunction = function(objects, propertyName, propertyFunction, propertyValues){ + var values = {}; + + $.each(objects, function(index, object){ + var value = propertyFunction(object); + if(value in values == false){ + values[value] = true; + } + }); + + deepEqual(Object.keys(values).sort(), propertyValues.sort(), 'Objects have correct ' + propertyName + ' values') +} + +var assertObjectsWithCollections = function(objects, propertyName){ + ok(objects.some(function(object){ + return object[propertyName] && Object.keys(object[propertyName]).length > 0; + }), 'Objects have ' + propertyName + ' collections'); +} + +var assertObjectsWithoutCollections = function(objects, propertyName){ + ok(objects.every(function(object){ + return !object[propertyName] || Object.keys(object[propertyName]).length == 0; + }), 'Object do not have ' + propertyName + ' collections'); +} + +var assertObjectsWithCodes = function(objects, codes){ + assertObjectsWithValues(objects, 'code', codes); +} + +var assertObjectsWithProperties = function(objects){ + assertObjectsWithCollections(objects, 'properties'); +} + +var assertObjectsWithoutProperties = function(objects){ + assertObjectsWithoutCollections(objects, 'properties'); +} + +var assertObjectsWithParentCodes = function(objects){ + assertObjectsWithCollections(objects, 'parentCodes'); +} + +var assertObjectsWithoutParentCodes = function(objects){ + assertObjectsWithoutCollections(objects, 'parentCodes'); +} + +var assertObjectsWithChildrenCodes = function(objects){ + assertObjectsWithCollections(objects, 'childrenCodes'); +} + +var assertObjectsWithoutChildrenCodes = function(objects){ + assertObjectsWithoutCollections(objects, 'childrenCodes'); +} \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/qunit.css b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/qunit.css new file mode 100644 index 0000000000000000000000000000000000000000..d7fc0c8eccbfbf2a35d803948f853eb541cf47b2 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/qunit.css @@ -0,0 +1,244 @@ +/** + * QUnit v1.11.0 - A JavaScript Unit Testing Framework + * + * http://qunitjs.com + * + * Copyright 2012 jQuery Foundation and other contributors + * Released under the MIT license. + * http://jquery.org/license + */ + +/** Font Family and Sizes */ + +#qunit-tests, #qunit-header, #qunit-banner, #qunit-testrunner-toolbar, #qunit-userAgent, #qunit-testresult { + font-family: "Helvetica Neue Light", "HelveticaNeue-Light", "Helvetica Neue", Calibri, Helvetica, Arial, sans-serif; +} + +#qunit-testrunner-toolbar, #qunit-userAgent, #qunit-testresult, #qunit-tests li { font-size: small; } +#qunit-tests { font-size: smaller; } + + +/** Resets */ + +#qunit-tests, #qunit-header, #qunit-banner, #qunit-userAgent, #qunit-testresult, #qunit-modulefilter { + margin: 0; + padding: 0; +} + + +/** Header */ + +#qunit-header { + padding: 0.5em 0 0.5em 1em; + + color: #8699a4; + background-color: #0d3349; + + font-size: 1.5em; + line-height: 1em; + font-weight: normal; + + border-radius: 5px 5px 0 0; + -moz-border-radius: 5px 5px 0 0; + -webkit-border-top-right-radius: 5px; + -webkit-border-top-left-radius: 5px; +} + +#qunit-header a { + text-decoration: none; + color: #c2ccd1; +} + +#qunit-header a:hover, +#qunit-header a:focus { + color: #fff; +} + +#qunit-testrunner-toolbar label { + display: inline-block; + padding: 0 .5em 0 .1em; +} + +#qunit-banner { + height: 5px; +} + +#qunit-testrunner-toolbar { + padding: 0.5em 0 0.5em 2em; + color: #5E740B; + background-color: #eee; + overflow: hidden; +} + +#qunit-userAgent { + padding: 0.5em 0 0.5em 2.5em; + background-color: #2b81af; + color: #fff; + text-shadow: rgba(0, 0, 0, 0.5) 2px 2px 1px; +} + +#qunit-modulefilter-container { + float: right; +} + +/** Tests: Pass/Fail */ + +#qunit-tests { + list-style-position: inside; +} + +#qunit-tests li { + padding: 0.4em 0.5em 0.4em 2.5em; + border-bottom: 1px solid #fff; + list-style-position: inside; +} + +#qunit-tests.hidepass li.pass, #qunit-tests.hidepass li.running { + display: none; +} + +#qunit-tests li strong { + cursor: pointer; +} + +#qunit-tests li a { + padding: 0.5em; + color: #c2ccd1; + text-decoration: none; +} +#qunit-tests li a:hover, +#qunit-tests li a:focus { + color: #000; +} + +#qunit-tests li .runtime { + float: right; + font-size: smaller; +} + +.qunit-assert-list { + margin-top: 0.5em; + padding: 0.5em; + + background-color: #fff; + + border-radius: 5px; + -moz-border-radius: 5px; + -webkit-border-radius: 5px; +} + +.qunit-collapsed { + display: none; +} + +#qunit-tests table { + border-collapse: collapse; + margin-top: .2em; +} + +#qunit-tests th { + text-align: right; + vertical-align: top; + padding: 0 .5em 0 0; +} + +#qunit-tests td { + vertical-align: top; +} + +#qunit-tests pre { + margin: 0; + white-space: pre-wrap; + word-wrap: break-word; +} + +#qunit-tests del { + background-color: #e0f2be; + color: #374e0c; + text-decoration: none; +} + +#qunit-tests ins { + background-color: #ffcaca; + color: #500; + text-decoration: none; +} + +/*** Test Counts */ + +#qunit-tests b.counts { color: black; } +#qunit-tests b.passed { color: #5E740B; } +#qunit-tests b.failed { color: #710909; } + +#qunit-tests li li { + padding: 5px; + background-color: #fff; + border-bottom: none; + list-style-position: inside; +} + +/*** Passing Styles */ + +#qunit-tests li li.pass { + color: #3c510c; + background-color: #fff; + border-left: 10px solid #C6E746; +} + +#qunit-tests .pass { color: #528CE0; background-color: #D2E0E6; } +#qunit-tests .pass .test-name { color: #366097; } + +#qunit-tests .pass .test-actual, +#qunit-tests .pass .test-expected { color: #999999; } + +#qunit-banner.qunit-pass { background-color: #C6E746; } + +/*** Failing Styles */ + +#qunit-tests li li.fail { + color: #710909; + background-color: #fff; + border-left: 10px solid #EE5757; + white-space: pre; +} + +#qunit-tests > li:last-child { + border-radius: 0 0 5px 5px; + -moz-border-radius: 0 0 5px 5px; + -webkit-border-bottom-right-radius: 5px; + -webkit-border-bottom-left-radius: 5px; +} + +#qunit-tests .fail { color: #000000; background-color: #EE5757; } +#qunit-tests .fail .test-name, +#qunit-tests .fail .module-name { color: #000000; } + +#qunit-tests .fail .test-actual { color: #EE5757; } +#qunit-tests .fail .test-expected { color: green; } + +#qunit-banner.qunit-fail { background-color: #EE5757; } + + +/** Result */ + +#qunit-testresult { + padding: 0.5em 0.5em 0.5em 2.5em; + + color: #2b81af; + background-color: #D2E0E6; + + border-bottom: 1px solid white; +} +#qunit-testresult .module-name { + font-weight: bold; +} + +/** Fixture */ + +#qunit-fixture { + position: absolute; + top: -10000px; + left: -10000px; + width: 1000px; + height: 1000px; +} diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/qunit.js b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/qunit.js new file mode 100644 index 0000000000000000000000000000000000000000..302545f4038e59c89a3647d2d176f92f436953ec --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/html/qunit.js @@ -0,0 +1,2152 @@ +/** + * QUnit v1.11.0 - A JavaScript Unit Testing Framework + * + * http://qunitjs.com + * + * Copyright 2012 jQuery Foundation and other contributors + * Released under the MIT license. + * http://jquery.org/license + */ + +(function( window ) { + +var QUnit, + assert, + config, + onErrorFnPrev, + testId = 0, + fileName = (sourceFromStacktrace( 0 ) || "" ).replace(/(:\d+)+\)?/, "").replace(/.+\//, ""), + toString = Object.prototype.toString, + hasOwn = Object.prototype.hasOwnProperty, + // Keep a local reference to Date (GH-283) + Date = window.Date, + defined = { + setTimeout: typeof window.setTimeout !== "undefined", + sessionStorage: (function() { + var x = "qunit-test-string"; + try { + sessionStorage.setItem( x, x ); + sessionStorage.removeItem( x ); + return true; + } catch( e ) { + return false; + } + }()) + }, + /** + * Provides a normalized error string, correcting an issue + * with IE 7 (and prior) where Error.prototype.toString is + * not properly implemented + * + * Based on http://es5.github.com/#x15.11.4.4 + * + * @param {String|Error} error + * @return {String} error message + */ + errorString = function( error ) { + var name, message, + errorString = error.toString(); + if ( errorString.substring( 0, 7 ) === "[object" ) { + name = error.name ? error.name.toString() : "Error"; + message = error.message ? error.message.toString() : ""; + if ( name && message ) { + return name + ": " + message; + } else if ( name ) { + return name; + } else if ( message ) { + return message; + } else { + return "Error"; + } + } else { + return errorString; + } + }, + /** + * Makes a clone of an object using only Array or Object as base, + * and copies over the own enumerable properties. + * + * @param {Object} obj + * @return {Object} New object with only the own properties (recursively). + */ + objectValues = function( obj ) { + // Grunt 0.3.x uses an older version of jshint that still has jshint/jshint#392. + /*jshint newcap: false */ + var key, val, + vals = QUnit.is( "array", obj ) ? [] : {}; + for ( key in obj ) { + if ( hasOwn.call( obj, key ) ) { + val = obj[key]; + vals[key] = val === Object(val) ? objectValues(val) : val; + } + } + return vals; + }; + +function Test( settings ) { + extend( this, settings ); + this.assertions = []; + this.testNumber = ++Test.count; +} + +Test.count = 0; + +Test.prototype = { + init: function() { + var a, b, li, + tests = id( "qunit-tests" ); + + if ( tests ) { + b = document.createElement( "strong" ); + b.innerHTML = this.nameHtml; + + // `a` initialized at top of scope + a = document.createElement( "a" ); + a.innerHTML = "Rerun"; + a.href = QUnit.url({ testNumber: this.testNumber }); + + li = document.createElement( "li" ); + li.appendChild( b ); + li.appendChild( a ); + li.className = "running"; + li.id = this.id = "qunit-test-output" + testId++; + + tests.appendChild( li ); + } + }, + setup: function() { + if ( this.module !== config.previousModule ) { + if ( config.previousModule ) { + runLoggingCallbacks( "moduleDone", QUnit, { + name: config.previousModule, + failed: config.moduleStats.bad, + passed: config.moduleStats.all - config.moduleStats.bad, + total: config.moduleStats.all + }); + } + config.previousModule = this.module; + config.moduleStats = { all: 0, bad: 0 }; + runLoggingCallbacks( "moduleStart", QUnit, { + name: this.module + }); + } else if ( config.autorun ) { + runLoggingCallbacks( "moduleStart", QUnit, { + name: this.module + }); + } + + config.current = this; + + this.testEnvironment = extend({ + setup: function() {}, + teardown: function() {} + }, this.moduleTestEnvironment ); + + this.started = +new Date(); + runLoggingCallbacks( "testStart", QUnit, { + name: this.testName, + module: this.module + }); + + // allow utility functions to access the current test environment + // TODO why?? + QUnit.current_testEnvironment = this.testEnvironment; + + if ( !config.pollution ) { + saveGlobal(); + } + if ( config.notrycatch ) { + this.testEnvironment.setup.call( this.testEnvironment ); + return; + } + try { + this.testEnvironment.setup.call( this.testEnvironment ); + } catch( e ) { + QUnit.pushFailure( "Setup failed on " + this.testName + ": " + ( e.message || e ), extractStacktrace( e, 1 ) ); + } + }, + run: function() { + config.current = this; + + var running = id( "qunit-testresult" ); + + if ( running ) { + running.innerHTML = "Running: <br/>" + this.nameHtml; + } + + if ( this.async ) { + QUnit.stop(); + } + + this.callbackStarted = +new Date(); + + if ( config.notrycatch ) { + this.callback.call( this.testEnvironment, QUnit.assert ); + this.callbackRuntime = +new Date() - this.callbackStarted; + return; + } + + try { + this.callback.call( this.testEnvironment, QUnit.assert ); + this.callbackRuntime = +new Date() - this.callbackStarted; + } catch( e ) { + this.callbackRuntime = +new Date() - this.callbackStarted; + + QUnit.pushFailure( "Died on test #" + (this.assertions.length + 1) + " " + this.stack + ": " + ( e.message || e ), extractStacktrace( e, 0 ) ); + // else next test will carry the responsibility + saveGlobal(); + + // Restart the tests if they're blocking + if ( config.blocking ) { + QUnit.start(); + } + } + }, + teardown: function() { + config.current = this; + if ( config.notrycatch ) { + if ( typeof this.callbackRuntime === "undefined" ) { + this.callbackRuntime = +new Date() - this.callbackStarted; + } + this.testEnvironment.teardown.call( this.testEnvironment ); + return; + } else { + try { + this.testEnvironment.teardown.call( this.testEnvironment ); + } catch( e ) { + QUnit.pushFailure( "Teardown failed on " + this.testName + ": " + ( e.message || e ), extractStacktrace( e, 1 ) ); + } + } + checkPollution(); + }, + finish: function() { + config.current = this; + if ( config.requireExpects && this.expected === null ) { + QUnit.pushFailure( "Expected number of assertions to be defined, but expect() was not called.", this.stack ); + } else if ( this.expected !== null && this.expected !== this.assertions.length ) { + QUnit.pushFailure( "Expected " + this.expected + " assertions, but " + this.assertions.length + " were run", this.stack ); + } else if ( this.expected === null && !this.assertions.length ) { + QUnit.pushFailure( "Expected at least one assertion, but none were run - call expect(0) to accept zero assertions.", this.stack ); + } + + var i, assertion, a, b, time, li, ol, + test = this, + good = 0, + bad = 0, + tests = id( "qunit-tests" ); + + this.runtime = +new Date() - this.started; + config.stats.all += this.assertions.length; + config.moduleStats.all += this.assertions.length; + + if ( tests ) { + ol = document.createElement( "ol" ); + ol.className = "qunit-assert-list"; + + for ( i = 0; i < this.assertions.length; i++ ) { + assertion = this.assertions[i]; + + li = document.createElement( "li" ); + li.className = assertion.result ? "pass" : "fail"; + li.innerHTML = assertion.message || ( assertion.result ? "okay" : "failed" ); + ol.appendChild( li ); + + if ( assertion.result ) { + good++; + } else { + bad++; + config.stats.bad++; + config.moduleStats.bad++; + } + } + + // store result when possible + if ( QUnit.config.reorder && defined.sessionStorage ) { + if ( bad ) { + sessionStorage.setItem( "qunit-test-" + this.module + "-" + this.testName, bad ); + } else { + sessionStorage.removeItem( "qunit-test-" + this.module + "-" + this.testName ); + } + } + + if ( bad === 0 ) { + addClass( ol, "qunit-collapsed" ); + } + + // `b` initialized at top of scope + b = document.createElement( "strong" ); + b.innerHTML = this.nameHtml + " <b class='counts'>(<b class='failed'>" + bad + "</b>, <b class='passed'>" + good + "</b>, " + this.assertions.length + ")</b>"; + + addEvent(b, "click", function() { + var next = b.parentNode.lastChild, + collapsed = hasClass( next, "qunit-collapsed" ); + ( collapsed ? removeClass : addClass )( next, "qunit-collapsed" ); + }); + + addEvent(b, "dblclick", function( e ) { + var target = e && e.target ? e.target : window.event.srcElement; + if ( target.nodeName.toLowerCase() === "span" || target.nodeName.toLowerCase() === "b" ) { + target = target.parentNode; + } + if ( window.location && target.nodeName.toLowerCase() === "strong" ) { + window.location = QUnit.url({ testNumber: test.testNumber }); + } + }); + + // `time` initialized at top of scope + time = document.createElement( "span" ); + time.className = "runtime"; + time.innerHTML = this.runtime + " ms"; + + // `li` initialized at top of scope + li = id( this.id ); + li.className = bad ? "fail" : "pass"; + li.removeChild( li.firstChild ); + a = li.firstChild; + li.appendChild( b ); + li.appendChild( a ); + li.appendChild( time ); + li.appendChild( ol ); + + } else { + for ( i = 0; i < this.assertions.length; i++ ) { + if ( !this.assertions[i].result ) { + bad++; + config.stats.bad++; + config.moduleStats.bad++; + } + } + } + + runLoggingCallbacks( "testDone", QUnit, { + name: this.testName, + module: this.module, + failed: bad, + passed: this.assertions.length - bad, + total: this.assertions.length, + duration: this.runtime + }); + + QUnit.reset(); + + config.current = undefined; + }, + + queue: function() { + var bad, + test = this; + + synchronize(function() { + test.init(); + }); + function run() { + // each of these can by async + synchronize(function() { + test.setup(); + }); + synchronize(function() { + test.run(); + }); + synchronize(function() { + test.teardown(); + }); + synchronize(function() { + test.finish(); + }); + } + + // `bad` initialized at top of scope + // defer when previous test run passed, if storage is available + bad = QUnit.config.reorder && defined.sessionStorage && + +sessionStorage.getItem( "qunit-test-" + this.module + "-" + this.testName ); + + if ( bad ) { + run(); + } else { + synchronize( run, true ); + } + } +}; + +// Root QUnit object. +// `QUnit` initialized at top of scope +QUnit = { + + // call on start of module test to prepend name to all tests + module: function( name, testEnvironment ) { + config.currentModule = name; + config.currentModuleTestEnvironment = testEnvironment; + config.modules[name] = true; + }, + + asyncTest: function( testName, expected, callback ) { + if ( arguments.length === 2 ) { + callback = expected; + expected = null; + } + + QUnit.test( testName, expected, callback, true ); + }, + + test: function( testName, expected, callback, async ) { + var test, + nameHtml = "<span class='test-name'>" + escapeText( testName ) + "</span>"; + + if ( arguments.length === 2 ) { + callback = expected; + expected = null; + } + + if ( config.currentModule ) { + nameHtml = "<span class='module-name'>" + escapeText( config.currentModule ) + "</span>: " + nameHtml; + } + + test = new Test({ + nameHtml: nameHtml, + testName: testName, + expected: expected, + async: async, + callback: callback, + module: config.currentModule, + moduleTestEnvironment: config.currentModuleTestEnvironment, + stack: sourceFromStacktrace( 2 ) + }); + + if ( !validTest( test ) ) { + return; + } + + test.queue(); + }, + + // Specify the number of expected assertions to gurantee that failed test (no assertions are run at all) don't slip through. + expect: function( asserts ) { + if (arguments.length === 1) { + config.current.expected = asserts; + } else { + return config.current.expected; + } + }, + + start: function( count ) { + // QUnit hasn't been initialized yet. + // Note: RequireJS (et al) may delay onLoad + if ( config.semaphore === undefined ) { + QUnit.begin(function() { + // This is triggered at the top of QUnit.load, push start() to the event loop, to allow QUnit.load to finish first + setTimeout(function() { + QUnit.start( count ); + }); + }); + return; + } + + config.semaphore -= count || 1; + // don't start until equal number of stop-calls + if ( config.semaphore > 0 ) { + return; + } + // ignore if start is called more often then stop + if ( config.semaphore < 0 ) { + config.semaphore = 0; + QUnit.pushFailure( "Called start() while already started (QUnit.config.semaphore was 0 already)", null, sourceFromStacktrace(2) ); + return; + } + // A slight delay, to avoid any current callbacks + if ( defined.setTimeout ) { + window.setTimeout(function() { + if ( config.semaphore > 0 ) { + return; + } + if ( config.timeout ) { + clearTimeout( config.timeout ); + } + + config.blocking = false; + process( true ); + }, 13); + } else { + config.blocking = false; + process( true ); + } + }, + + stop: function( count ) { + config.semaphore += count || 1; + config.blocking = true; + + if ( config.testTimeout && defined.setTimeout ) { + clearTimeout( config.timeout ); + config.timeout = window.setTimeout(function() { + QUnit.ok( false, "Test timed out" ); + config.semaphore = 1; + QUnit.start(); + }, config.testTimeout ); + } + } +}; + +// `assert` initialized at top of scope +// Asssert helpers +// All of these must either call QUnit.push() or manually do: +// - runLoggingCallbacks( "log", .. ); +// - config.current.assertions.push({ .. }); +// We attach it to the QUnit object *after* we expose the public API, +// otherwise `assert` will become a global variable in browsers (#341). +assert = { + /** + * Asserts rough true-ish result. + * @name ok + * @function + * @example ok( "asdfasdf".length > 5, "There must be at least 5 chars" ); + */ + ok: function( result, msg ) { + if ( !config.current ) { + throw new Error( "ok() assertion outside test context, was " + sourceFromStacktrace(2) ); + } + result = !!result; + + var source, + details = { + module: config.current.module, + name: config.current.testName, + result: result, + message: msg + }; + + msg = escapeText( msg || (result ? "okay" : "failed" ) ); + msg = "<span class='test-message'>" + msg + "</span>"; + + if ( !result ) { + source = sourceFromStacktrace( 2 ); + if ( source ) { + details.source = source; + msg += "<table><tr class='test-source'><th>Source: </th><td><pre>" + escapeText( source ) + "</pre></td></tr></table>"; + } + } + runLoggingCallbacks( "log", QUnit, details ); + config.current.assertions.push({ + result: result, + message: msg + }); + }, + + /** + * Assert that the first two arguments are equal, with an optional message. + * Prints out both actual and expected values. + * @name equal + * @function + * @example equal( format( "Received {0} bytes.", 2), "Received 2 bytes.", "format() replaces {0} with next argument" ); + */ + equal: function( actual, expected, message ) { + /*jshint eqeqeq:false */ + QUnit.push( expected == actual, actual, expected, message ); + }, + + /** + * @name notEqual + * @function + */ + notEqual: function( actual, expected, message ) { + /*jshint eqeqeq:false */ + QUnit.push( expected != actual, actual, expected, message ); + }, + + /** + * @name propEqual + * @function + */ + propEqual: function( actual, expected, message ) { + actual = objectValues(actual); + expected = objectValues(expected); + QUnit.push( QUnit.equiv(actual, expected), actual, expected, message ); + }, + + /** + * @name notPropEqual + * @function + */ + notPropEqual: function( actual, expected, message ) { + actual = objectValues(actual); + expected = objectValues(expected); + QUnit.push( !QUnit.equiv(actual, expected), actual, expected, message ); + }, + + /** + * @name deepEqual + * @function + */ + deepEqual: function( actual, expected, message ) { + QUnit.push( QUnit.equiv(actual, expected), actual, expected, message ); + }, + + /** + * @name notDeepEqual + * @function + */ + notDeepEqual: function( actual, expected, message ) { + QUnit.push( !QUnit.equiv(actual, expected), actual, expected, message ); + }, + + /** + * @name strictEqual + * @function + */ + strictEqual: function( actual, expected, message ) { + QUnit.push( expected === actual, actual, expected, message ); + }, + + /** + * @name notStrictEqual + * @function + */ + notStrictEqual: function( actual, expected, message ) { + QUnit.push( expected !== actual, actual, expected, message ); + }, + + "throws": function( block, expected, message ) { + var actual, + expectedOutput = expected, + ok = false; + + // 'expected' is optional + if ( typeof expected === "string" ) { + message = expected; + expected = null; + } + + config.current.ignoreGlobalErrors = true; + try { + block.call( config.current.testEnvironment ); + } catch (e) { + actual = e; + } + config.current.ignoreGlobalErrors = false; + + if ( actual ) { + // we don't want to validate thrown error + if ( !expected ) { + ok = true; + expectedOutput = null; + // expected is a regexp + } else if ( QUnit.objectType( expected ) === "regexp" ) { + ok = expected.test( errorString( actual ) ); + // expected is a constructor + } else if ( actual instanceof expected ) { + ok = true; + // expected is a validation function which returns true is validation passed + } else if ( expected.call( {}, actual ) === true ) { + expectedOutput = null; + ok = true; + } + + QUnit.push( ok, actual, expectedOutput, message ); + } else { + QUnit.pushFailure( message, null, 'No exception was thrown.' ); + } + } +}; + +/** + * @deprecate since 1.8.0 + * Kept assertion helpers in root for backwards compatibility. + */ +extend( QUnit, assert ); + +/** + * @deprecated since 1.9.0 + * Kept root "raises()" for backwards compatibility. + * (Note that we don't introduce assert.raises). + */ +QUnit.raises = assert[ "throws" ]; + +/** + * @deprecated since 1.0.0, replaced with error pushes since 1.3.0 + * Kept to avoid TypeErrors for undefined methods. + */ +QUnit.equals = function() { + QUnit.push( false, false, false, "QUnit.equals has been deprecated since 2009 (e88049a0), use QUnit.equal instead" ); +}; +QUnit.same = function() { + QUnit.push( false, false, false, "QUnit.same has been deprecated since 2009 (e88049a0), use QUnit.deepEqual instead" ); +}; + +// We want access to the constructor's prototype +(function() { + function F() {} + F.prototype = QUnit; + QUnit = new F(); + // Make F QUnit's constructor so that we can add to the prototype later + QUnit.constructor = F; +}()); + +/** + * Config object: Maintain internal state + * Later exposed as QUnit.config + * `config` initialized at top of scope + */ +config = { + // The queue of tests to run + queue: [], + + // block until document ready + blocking: true, + + // when enabled, show only failing tests + // gets persisted through sessionStorage and can be changed in UI via checkbox + hidepassed: false, + + // by default, run previously failed tests first + // very useful in combination with "Hide passed tests" checked + reorder: true, + + // by default, modify document.title when suite is done + altertitle: true, + + // when enabled, all tests must call expect() + requireExpects: false, + + // add checkboxes that are persisted in the query-string + // when enabled, the id is set to `true` as a `QUnit.config` property + urlConfig: [ + { + id: "noglobals", + label: "Check for Globals", + tooltip: "Enabling this will test if any test introduces new properties on the `window` object. Stored as query-strings." + }, + { + id: "notrycatch", + label: "No try-catch", + tooltip: "Enabling this will run tests outside of a try-catch block. Makes debugging exceptions in IE reasonable. Stored as query-strings." + } + ], + + // Set of all modules. + modules: {}, + + // logging callback queues + begin: [], + done: [], + log: [], + testStart: [], + testDone: [], + moduleStart: [], + moduleDone: [] +}; + +// Export global variables, unless an 'exports' object exists, +// in that case we assume we're in CommonJS (dealt with on the bottom of the script) +if ( typeof exports === "undefined" ) { + extend( window, QUnit ); + + // Expose QUnit object + window.QUnit = QUnit; +} + +// Initialize more QUnit.config and QUnit.urlParams +(function() { + var i, + location = window.location || { search: "", protocol: "file:" }, + params = location.search.slice( 1 ).split( "&" ), + length = params.length, + urlParams = {}, + current; + + if ( params[ 0 ] ) { + for ( i = 0; i < length; i++ ) { + current = params[ i ].split( "=" ); + current[ 0 ] = decodeURIComponent( current[ 0 ] ); + // allow just a key to turn on a flag, e.g., test.html?noglobals + current[ 1 ] = current[ 1 ] ? decodeURIComponent( current[ 1 ] ) : true; + urlParams[ current[ 0 ] ] = current[ 1 ]; + } + } + + QUnit.urlParams = urlParams; + + // String search anywhere in moduleName+testName + config.filter = urlParams.filter; + + // Exact match of the module name + config.module = urlParams.module; + + config.testNumber = parseInt( urlParams.testNumber, 10 ) || null; + + // Figure out if we're running the tests from a server or not + QUnit.isLocal = location.protocol === "file:"; +}()); + +// Extend QUnit object, +// these after set here because they should not be exposed as global functions +extend( QUnit, { + assert: assert, + + config: config, + + // Initialize the configuration options + init: function() { + extend( config, { + stats: { all: 0, bad: 0 }, + moduleStats: { all: 0, bad: 0 }, + started: +new Date(), + updateRate: 1000, + blocking: false, + autostart: true, + autorun: false, + filter: "", + queue: [], + semaphore: 1 + }); + + var tests, banner, result, + qunit = id( "qunit" ); + + if ( qunit ) { + qunit.innerHTML = + "<h1 id='qunit-header'>" + escapeText( document.title ) + "</h1>" + + "<h2 id='qunit-banner'></h2>" + + "<div id='qunit-testrunner-toolbar'></div>" + + "<h2 id='qunit-userAgent'></h2>" + + "<ol id='qunit-tests'></ol>"; + } + + tests = id( "qunit-tests" ); + banner = id( "qunit-banner" ); + result = id( "qunit-testresult" ); + + if ( tests ) { + tests.innerHTML = ""; + } + + if ( banner ) { + banner.className = ""; + } + + if ( result ) { + result.parentNode.removeChild( result ); + } + + if ( tests ) { + result = document.createElement( "p" ); + result.id = "qunit-testresult"; + result.className = "result"; + tests.parentNode.insertBefore( result, tests ); + result.innerHTML = "Running...<br/> "; + } + }, + + // Resets the test setup. Useful for tests that modify the DOM. + reset: function() { + var fixture = id( "qunit-fixture" ); + if ( fixture ) { + fixture.innerHTML = config.fixture; + } + }, + + // Trigger an event on an element. + // @example triggerEvent( document.body, "click" ); + triggerEvent: function( elem, type, event ) { + if ( document.createEvent ) { + event = document.createEvent( "MouseEvents" ); + event.initMouseEvent(type, true, true, elem.ownerDocument.defaultView, + 0, 0, 0, 0, 0, false, false, false, false, 0, null); + + elem.dispatchEvent( event ); + } else if ( elem.fireEvent ) { + elem.fireEvent( "on" + type ); + } + }, + + // Safe object type checking + is: function( type, obj ) { + return QUnit.objectType( obj ) === type; + }, + + objectType: function( obj ) { + if ( typeof obj === "undefined" ) { + return "undefined"; + // consider: typeof null === object + } + if ( obj === null ) { + return "null"; + } + + var match = toString.call( obj ).match(/^\[object\s(.*)\]$/), + type = match && match[1] || ""; + + switch ( type ) { + case "Number": + if ( isNaN(obj) ) { + return "nan"; + } + return "number"; + case "String": + case "Boolean": + case "Array": + case "Date": + case "RegExp": + case "Function": + return type.toLowerCase(); + } + if ( typeof obj === "object" ) { + return "object"; + } + return undefined; + }, + + push: function( result, actual, expected, message ) { + if ( !config.current ) { + throw new Error( "assertion outside test context, was " + sourceFromStacktrace() ); + } + + var output, source, + details = { + module: config.current.module, + name: config.current.testName, + result: result, + message: message, + actual: actual, + expected: expected + }; + + message = escapeText( message ) || ( result ? "okay" : "failed" ); + message = "<span class='test-message'>" + message + "</span>"; + output = message; + + if ( !result ) { + expected = escapeText( QUnit.jsDump.parse(expected) ); + actual = escapeText( QUnit.jsDump.parse(actual) ); + output += "<table><tr class='test-expected'><th>Expected: </th><td><pre>" + expected + "</pre></td></tr>"; + + if ( actual !== expected ) { + output += "<tr class='test-actual'><th>Result: </th><td><pre>" + actual + "</pre></td></tr>"; + output += "<tr class='test-diff'><th>Diff: </th><td><pre>" + QUnit.diff( expected, actual ) + "</pre></td></tr>"; + } + + source = sourceFromStacktrace(); + + if ( source ) { + details.source = source; + output += "<tr class='test-source'><th>Source: </th><td><pre>" + escapeText( source ) + "</pre></td></tr>"; + } + + output += "</table>"; + } + + runLoggingCallbacks( "log", QUnit, details ); + + config.current.assertions.push({ + result: !!result, + message: output + }); + }, + + pushFailure: function( message, source, actual ) { + if ( !config.current ) { + throw new Error( "pushFailure() assertion outside test context, was " + sourceFromStacktrace(2) ); + } + + var output, + details = { + module: config.current.module, + name: config.current.testName, + result: false, + message: message + }; + + message = escapeText( message ) || "error"; + message = "<span class='test-message'>" + message + "</span>"; + output = message; + + output += "<table>"; + + if ( actual ) { + output += "<tr class='test-actual'><th>Result: </th><td><pre>" + escapeText( actual ) + "</pre></td></tr>"; + } + + if ( source ) { + details.source = source; + output += "<tr class='test-source'><th>Source: </th><td><pre>" + escapeText( source ) + "</pre></td></tr>"; + } + + output += "</table>"; + + runLoggingCallbacks( "log", QUnit, details ); + + config.current.assertions.push({ + result: false, + message: output + }); + }, + + url: function( params ) { + params = extend( extend( {}, QUnit.urlParams ), params ); + var key, + querystring = "?"; + + for ( key in params ) { + if ( !hasOwn.call( params, key ) ) { + continue; + } + querystring += encodeURIComponent( key ) + "=" + + encodeURIComponent( params[ key ] ) + "&"; + } + return window.location.protocol + "//" + window.location.host + + window.location.pathname + querystring.slice( 0, -1 ); + }, + + extend: extend, + id: id, + addEvent: addEvent + // load, equiv, jsDump, diff: Attached later +}); + +/** + * @deprecated: Created for backwards compatibility with test runner that set the hook function + * into QUnit.{hook}, instead of invoking it and passing the hook function. + * QUnit.constructor is set to the empty F() above so that we can add to it's prototype here. + * Doing this allows us to tell if the following methods have been overwritten on the actual + * QUnit object. + */ +extend( QUnit.constructor.prototype, { + + // Logging callbacks; all receive a single argument with the listed properties + // run test/logs.html for any related changes + begin: registerLoggingCallback( "begin" ), + + // done: { failed, passed, total, runtime } + done: registerLoggingCallback( "done" ), + + // log: { result, actual, expected, message } + log: registerLoggingCallback( "log" ), + + // testStart: { name } + testStart: registerLoggingCallback( "testStart" ), + + // testDone: { name, failed, passed, total, duration } + testDone: registerLoggingCallback( "testDone" ), + + // moduleStart: { name } + moduleStart: registerLoggingCallback( "moduleStart" ), + + // moduleDone: { name, failed, passed, total } + moduleDone: registerLoggingCallback( "moduleDone" ) +}); + +if ( typeof document === "undefined" || document.readyState === "complete" ) { + config.autorun = true; +} + +QUnit.load = function() { + runLoggingCallbacks( "begin", QUnit, {} ); + + // Initialize the config, saving the execution queue + var banner, filter, i, label, len, main, ol, toolbar, userAgent, val, + urlConfigCheckboxesContainer, urlConfigCheckboxes, moduleFilter, + numModules = 0, + moduleFilterHtml = "", + urlConfigHtml = "", + oldconfig = extend( {}, config ); + + QUnit.init(); + extend(config, oldconfig); + + config.blocking = false; + + len = config.urlConfig.length; + + for ( i = 0; i < len; i++ ) { + val = config.urlConfig[i]; + if ( typeof val === "string" ) { + val = { + id: val, + label: val, + tooltip: "[no tooltip available]" + }; + } + config[ val.id ] = QUnit.urlParams[ val.id ]; + urlConfigHtml += "<input id='qunit-urlconfig-" + escapeText( val.id ) + + "' name='" + escapeText( val.id ) + + "' type='checkbox'" + ( config[ val.id ] ? " checked='checked'" : "" ) + + " title='" + escapeText( val.tooltip ) + + "'><label for='qunit-urlconfig-" + escapeText( val.id ) + + "' title='" + escapeText( val.tooltip ) + "'>" + val.label + "</label>"; + } + + moduleFilterHtml += "<label for='qunit-modulefilter'>Module: </label><select id='qunit-modulefilter' name='modulefilter'><option value='' " + + ( config.module === undefined ? "selected='selected'" : "" ) + + ">< All Modules ></option>"; + + for ( i in config.modules ) { + if ( config.modules.hasOwnProperty( i ) ) { + numModules += 1; + moduleFilterHtml += "<option value='" + escapeText( encodeURIComponent(i) ) + "' " + + ( config.module === i ? "selected='selected'" : "" ) + + ">" + escapeText(i) + "</option>"; + } + } + moduleFilterHtml += "</select>"; + + // `userAgent` initialized at top of scope + userAgent = id( "qunit-userAgent" ); + if ( userAgent ) { + userAgent.innerHTML = navigator.userAgent; + } + + // `banner` initialized at top of scope + banner = id( "qunit-header" ); + if ( banner ) { + banner.innerHTML = "<a href='" + QUnit.url({ filter: undefined, module: undefined, testNumber: undefined }) + "'>" + banner.innerHTML + "</a> "; + } + + // `toolbar` initialized at top of scope + toolbar = id( "qunit-testrunner-toolbar" ); + if ( toolbar ) { + // `filter` initialized at top of scope + filter = document.createElement( "input" ); + filter.type = "checkbox"; + filter.id = "qunit-filter-pass"; + + addEvent( filter, "click", function() { + var tmp, + ol = document.getElementById( "qunit-tests" ); + + if ( filter.checked ) { + ol.className = ol.className + " hidepass"; + } else { + tmp = " " + ol.className.replace( /[\n\t\r]/g, " " ) + " "; + ol.className = tmp.replace( / hidepass /, " " ); + } + if ( defined.sessionStorage ) { + if (filter.checked) { + sessionStorage.setItem( "qunit-filter-passed-tests", "true" ); + } else { + sessionStorage.removeItem( "qunit-filter-passed-tests" ); + } + } + }); + + if ( config.hidepassed || defined.sessionStorage && sessionStorage.getItem( "qunit-filter-passed-tests" ) ) { + filter.checked = true; + // `ol` initialized at top of scope + ol = document.getElementById( "qunit-tests" ); + ol.className = ol.className + " hidepass"; + } + toolbar.appendChild( filter ); + + // `label` initialized at top of scope + label = document.createElement( "label" ); + label.setAttribute( "for", "qunit-filter-pass" ); + label.setAttribute( "title", "Only show tests and assertons that fail. Stored in sessionStorage." ); + label.innerHTML = "Hide passed tests"; + toolbar.appendChild( label ); + + urlConfigCheckboxesContainer = document.createElement("span"); + urlConfigCheckboxesContainer.innerHTML = urlConfigHtml; + urlConfigCheckboxes = urlConfigCheckboxesContainer.getElementsByTagName("input"); + // For oldIE support: + // * Add handlers to the individual elements instead of the container + // * Use "click" instead of "change" + // * Fallback from event.target to event.srcElement + addEvents( urlConfigCheckboxes, "click", function( event ) { + var params = {}, + target = event.target || event.srcElement; + params[ target.name ] = target.checked ? true : undefined; + window.location = QUnit.url( params ); + }); + toolbar.appendChild( urlConfigCheckboxesContainer ); + + if (numModules > 1) { + moduleFilter = document.createElement( 'span' ); + moduleFilter.setAttribute( 'id', 'qunit-modulefilter-container' ); + moduleFilter.innerHTML = moduleFilterHtml; + addEvent( moduleFilter.lastChild, "change", function() { + var selectBox = moduleFilter.getElementsByTagName("select")[0], + selectedModule = decodeURIComponent(selectBox.options[selectBox.selectedIndex].value); + + window.location = QUnit.url( { module: ( selectedModule === "" ) ? undefined : selectedModule } ); + }); + toolbar.appendChild(moduleFilter); + } + } + + // `main` initialized at top of scope + main = id( "qunit-fixture" ); + if ( main ) { + config.fixture = main.innerHTML; + } + + if ( config.autostart ) { + QUnit.start(); + } +}; + +addEvent( window, "load", QUnit.load ); + +// `onErrorFnPrev` initialized at top of scope +// Preserve other handlers +onErrorFnPrev = window.onerror; + +// Cover uncaught exceptions +// Returning true will surpress the default browser handler, +// returning false will let it run. +window.onerror = function ( error, filePath, linerNr ) { + var ret = false; + if ( onErrorFnPrev ) { + ret = onErrorFnPrev( error, filePath, linerNr ); + } + + // Treat return value as window.onerror itself does, + // Only do our handling if not surpressed. + if ( ret !== true ) { + if ( QUnit.config.current ) { + if ( QUnit.config.current.ignoreGlobalErrors ) { + return true; + } + QUnit.pushFailure( error, filePath + ":" + linerNr ); + } else { + QUnit.test( "global failure", extend( function() { + QUnit.pushFailure( error, filePath + ":" + linerNr ); + }, { validTest: validTest } ) ); + } + return false; + } + + return ret; +}; + +function done() { + config.autorun = true; + + // Log the last module results + if ( config.currentModule ) { + runLoggingCallbacks( "moduleDone", QUnit, { + name: config.currentModule, + failed: config.moduleStats.bad, + passed: config.moduleStats.all - config.moduleStats.bad, + total: config.moduleStats.all + }); + } + + var i, key, + banner = id( "qunit-banner" ), + tests = id( "qunit-tests" ), + runtime = +new Date() - config.started, + passed = config.stats.all - config.stats.bad, + html = [ + "Tests completed in ", + runtime, + " milliseconds.<br/>", + "<span class='passed'>", + passed, + "</span> assertions of <span class='total'>", + config.stats.all, + "</span> passed, <span class='failed'>", + config.stats.bad, + "</span> failed." + ].join( "" ); + + if ( banner ) { + banner.className = ( config.stats.bad ? "qunit-fail" : "qunit-pass" ); + } + + if ( tests ) { + id( "qunit-testresult" ).innerHTML = html; + } + + if ( config.altertitle && typeof document !== "undefined" && document.title ) { + // show ✖ for good, ✔ for bad suite result in title + // use escape sequences in case file gets loaded with non-utf-8-charset + document.title = [ + ( config.stats.bad ? "\u2716" : "\u2714" ), + document.title.replace( /^[\u2714\u2716] /i, "" ) + ].join( " " ); + } + + // clear own sessionStorage items if all tests passed + if ( config.reorder && defined.sessionStorage && config.stats.bad === 0 ) { + // `key` & `i` initialized at top of scope + for ( i = 0; i < sessionStorage.length; i++ ) { + key = sessionStorage.key( i++ ); + if ( key.indexOf( "qunit-test-" ) === 0 ) { + sessionStorage.removeItem( key ); + } + } + } + + // scroll back to top to show results + if ( window.scrollTo ) { + window.scrollTo(0, 0); + } + + runLoggingCallbacks( "done", QUnit, { + failed: config.stats.bad, + passed: passed, + total: config.stats.all, + runtime: runtime + }); +} + +/** @return Boolean: true if this test should be ran */ +function validTest( test ) { + var include, + filter = config.filter && config.filter.toLowerCase(), + module = config.module && config.module.toLowerCase(), + fullName = (test.module + ": " + test.testName).toLowerCase(); + + // Internally-generated tests are always valid + if ( test.callback && test.callback.validTest === validTest ) { + delete test.callback.validTest; + return true; + } + + if ( config.testNumber ) { + return test.testNumber === config.testNumber; + } + + if ( module && ( !test.module || test.module.toLowerCase() !== module ) ) { + return false; + } + + if ( !filter ) { + return true; + } + + include = filter.charAt( 0 ) !== "!"; + if ( !include ) { + filter = filter.slice( 1 ); + } + + // If the filter matches, we need to honour include + if ( fullName.indexOf( filter ) !== -1 ) { + return include; + } + + // Otherwise, do the opposite + return !include; +} + +// so far supports only Firefox, Chrome and Opera (buggy), Safari (for real exceptions) +// Later Safari and IE10 are supposed to support error.stack as well +// See also https://developer.mozilla.org/en/JavaScript/Reference/Global_Objects/Error/Stack +function extractStacktrace( e, offset ) { + offset = offset === undefined ? 3 : offset; + + var stack, include, i; + + if ( e.stacktrace ) { + // Opera + return e.stacktrace.split( "\n" )[ offset + 3 ]; + } else if ( e.stack ) { + // Firefox, Chrome + stack = e.stack.split( "\n" ); + if (/^error$/i.test( stack[0] ) ) { + stack.shift(); + } + if ( fileName ) { + include = []; + for ( i = offset; i < stack.length; i++ ) { + if ( stack[ i ].indexOf( fileName ) !== -1 ) { + break; + } + include.push( stack[ i ] ); + } + if ( include.length ) { + return include.join( "\n" ); + } + } + return stack[ offset ]; + } else if ( e.sourceURL ) { + // Safari, PhantomJS + // hopefully one day Safari provides actual stacktraces + // exclude useless self-reference for generated Error objects + if ( /qunit.js$/.test( e.sourceURL ) ) { + return; + } + // for actual exceptions, this is useful + return e.sourceURL + ":" + e.line; + } +} +function sourceFromStacktrace( offset ) { + try { + throw new Error(); + } catch ( e ) { + return extractStacktrace( e, offset ); + } +} + +/** + * Escape text for attribute or text content. + */ +function escapeText( s ) { + if ( !s ) { + return ""; + } + s = s + ""; + // Both single quotes and double quotes (for attributes) + return s.replace( /['"<>&]/g, function( s ) { + switch( s ) { + case '\'': + return '''; + case '"': + return '"'; + case '<': + return '<'; + case '>': + return '>'; + case '&': + return '&'; + } + }); +} + +function synchronize( callback, last ) { + config.queue.push( callback ); + + if ( config.autorun && !config.blocking ) { + process( last ); + } +} + +function process( last ) { + function next() { + process( last ); + } + var start = new Date().getTime(); + config.depth = config.depth ? config.depth + 1 : 1; + + while ( config.queue.length && !config.blocking ) { + if ( !defined.setTimeout || config.updateRate <= 0 || ( ( new Date().getTime() - start ) < config.updateRate ) ) { + config.queue.shift()(); + } else { + window.setTimeout( next, 13 ); + break; + } + } + config.depth--; + if ( last && !config.blocking && !config.queue.length && config.depth === 0 ) { + done(); + } +} + +function saveGlobal() { + config.pollution = []; + + if ( config.noglobals ) { + for ( var key in window ) { + // in Opera sometimes DOM element ids show up here, ignore them + if ( !hasOwn.call( window, key ) || /^qunit-test-output/.test( key ) ) { + continue; + } + config.pollution.push( key ); + } + } +} + +function checkPollution() { + var newGlobals, + deletedGlobals, + old = config.pollution; + + saveGlobal(); + + newGlobals = diff( config.pollution, old ); + if ( newGlobals.length > 0 ) { + QUnit.pushFailure( "Introduced global variable(s): " + newGlobals.join(", ") ); + } + + deletedGlobals = diff( old, config.pollution ); + if ( deletedGlobals.length > 0 ) { + QUnit.pushFailure( "Deleted global variable(s): " + deletedGlobals.join(", ") ); + } +} + +// returns a new Array with the elements that are in a but not in b +function diff( a, b ) { + var i, j, + result = a.slice(); + + for ( i = 0; i < result.length; i++ ) { + for ( j = 0; j < b.length; j++ ) { + if ( result[i] === b[j] ) { + result.splice( i, 1 ); + i--; + break; + } + } + } + return result; +} + +function extend( a, b ) { + for ( var prop in b ) { + if ( b[ prop ] === undefined ) { + delete a[ prop ]; + + // Avoid "Member not found" error in IE8 caused by setting window.constructor + } else if ( prop !== "constructor" || a !== window ) { + a[ prop ] = b[ prop ]; + } + } + + return a; +} + +/** + * @param {HTMLElement} elem + * @param {string} type + * @param {Function} fn + */ +function addEvent( elem, type, fn ) { + // Standards-based browsers + if ( elem.addEventListener ) { + elem.addEventListener( type, fn, false ); + // IE + } else { + elem.attachEvent( "on" + type, fn ); + } +} + +/** + * @param {Array|NodeList} elems + * @param {string} type + * @param {Function} fn + */ +function addEvents( elems, type, fn ) { + var i = elems.length; + while ( i-- ) { + addEvent( elems[i], type, fn ); + } +} + +function hasClass( elem, name ) { + return (" " + elem.className + " ").indexOf(" " + name + " ") > -1; +} + +function addClass( elem, name ) { + if ( !hasClass( elem, name ) ) { + elem.className += (elem.className ? " " : "") + name; + } +} + +function removeClass( elem, name ) { + var set = " " + elem.className + " "; + // Class name may appear multiple times + while ( set.indexOf(" " + name + " ") > -1 ) { + set = set.replace(" " + name + " " , " "); + } + // If possible, trim it for prettiness, but not neccecarily + elem.className = window.jQuery ? jQuery.trim( set ) : ( set.trim ? set.trim() : set ); +} + +function id( name ) { + return !!( typeof document !== "undefined" && document && document.getElementById ) && + document.getElementById( name ); +} + +function registerLoggingCallback( key ) { + return function( callback ) { + config[key].push( callback ); + }; +} + +// Supports deprecated method of completely overwriting logging callbacks +function runLoggingCallbacks( key, scope, args ) { + var i, callbacks; + if ( QUnit.hasOwnProperty( key ) ) { + QUnit[ key ].call(scope, args ); + } else { + callbacks = config[ key ]; + for ( i = 0; i < callbacks.length; i++ ) { + callbacks[ i ].call( scope, args ); + } + } +} + +// Test for equality any JavaScript type. +// Author: Philippe Rathé <prathe@gmail.com> +QUnit.equiv = (function() { + + // Call the o related callback with the given arguments. + function bindCallbacks( o, callbacks, args ) { + var prop = QUnit.objectType( o ); + if ( prop ) { + if ( QUnit.objectType( callbacks[ prop ] ) === "function" ) { + return callbacks[ prop ].apply( callbacks, args ); + } else { + return callbacks[ prop ]; // or undefined + } + } + } + + // the real equiv function + var innerEquiv, + // stack to decide between skip/abort functions + callers = [], + // stack to avoiding loops from circular referencing + parents = [], + + getProto = Object.getPrototypeOf || function ( obj ) { + return obj.__proto__; + }, + callbacks = (function () { + + // for string, boolean, number and null + function useStrictEquality( b, a ) { + /*jshint eqeqeq:false */ + if ( b instanceof a.constructor || a instanceof b.constructor ) { + // to catch short annotaion VS 'new' annotation of a + // declaration + // e.g. var i = 1; + // var j = new Number(1); + return a == b; + } else { + return a === b; + } + } + + return { + "string": useStrictEquality, + "boolean": useStrictEquality, + "number": useStrictEquality, + "null": useStrictEquality, + "undefined": useStrictEquality, + + "nan": function( b ) { + return isNaN( b ); + }, + + "date": function( b, a ) { + return QUnit.objectType( b ) === "date" && a.valueOf() === b.valueOf(); + }, + + "regexp": function( b, a ) { + return QUnit.objectType( b ) === "regexp" && + // the regex itself + a.source === b.source && + // and its modifers + a.global === b.global && + // (gmi) ... + a.ignoreCase === b.ignoreCase && + a.multiline === b.multiline && + a.sticky === b.sticky; + }, + + // - skip when the property is a method of an instance (OOP) + // - abort otherwise, + // initial === would have catch identical references anyway + "function": function() { + var caller = callers[callers.length - 1]; + return caller !== Object && typeof caller !== "undefined"; + }, + + "array": function( b, a ) { + var i, j, len, loop; + + // b could be an object literal here + if ( QUnit.objectType( b ) !== "array" ) { + return false; + } + + len = a.length; + if ( len !== b.length ) { + // safe and faster + return false; + } + + // track reference to avoid circular references + parents.push( a ); + for ( i = 0; i < len; i++ ) { + loop = false; + for ( j = 0; j < parents.length; j++ ) { + if ( parents[j] === a[i] ) { + loop = true;// dont rewalk array + } + } + if ( !loop && !innerEquiv(a[i], b[i]) ) { + parents.pop(); + return false; + } + } + parents.pop(); + return true; + }, + + "object": function( b, a ) { + var i, j, loop, + // Default to true + eq = true, + aProperties = [], + bProperties = []; + + // comparing constructors is more strict than using + // instanceof + if ( a.constructor !== b.constructor ) { + // Allow objects with no prototype to be equivalent to + // objects with Object as their constructor. + if ( !(( getProto(a) === null && getProto(b) === Object.prototype ) || + ( getProto(b) === null && getProto(a) === Object.prototype ) ) ) { + return false; + } + } + + // stack constructor before traversing properties + callers.push( a.constructor ); + // track reference to avoid circular references + parents.push( a ); + + for ( i in a ) { // be strict: don't ensures hasOwnProperty + // and go deep + loop = false; + for ( j = 0; j < parents.length; j++ ) { + if ( parents[j] === a[i] ) { + // don't go down the same path twice + loop = true; + } + } + aProperties.push(i); // collect a's properties + + if (!loop && !innerEquiv( a[i], b[i] ) ) { + eq = false; + break; + } + } + + callers.pop(); // unstack, we are done + parents.pop(); + + for ( i in b ) { + bProperties.push( i ); // collect b's properties + } + + // Ensures identical properties name + return eq && innerEquiv( aProperties.sort(), bProperties.sort() ); + } + }; + }()); + + innerEquiv = function() { // can take multiple arguments + var args = [].slice.apply( arguments ); + if ( args.length < 2 ) { + return true; // end transition + } + + return (function( a, b ) { + if ( a === b ) { + return true; // catch the most you can + } else if ( a === null || b === null || typeof a === "undefined" || + typeof b === "undefined" || + QUnit.objectType(a) !== QUnit.objectType(b) ) { + return false; // don't lose time with error prone cases + } else { + return bindCallbacks(a, callbacks, [ b, a ]); + } + + // apply transition with (1..n) arguments + }( args[0], args[1] ) && arguments.callee.apply( this, args.splice(1, args.length - 1 )) ); + }; + + return innerEquiv; +}()); + +/** + * jsDump Copyright (c) 2008 Ariel Flesler - aflesler(at)gmail(dot)com | + * http://flesler.blogspot.com Licensed under BSD + * (http://www.opensource.org/licenses/bsd-license.php) Date: 5/15/2008 + * + * @projectDescription Advanced and extensible data dumping for Javascript. + * @version 1.0.0 + * @author Ariel Flesler + * @link {http://flesler.blogspot.com/2008/05/jsdump-pretty-dump-of-any-javascript.html} + */ +QUnit.jsDump = (function() { + function quote( str ) { + return '"' + str.toString().replace( /"/g, '\\"' ) + '"'; + } + function literal( o ) { + return o + ""; + } + function join( pre, arr, post ) { + var s = jsDump.separator(), + base = jsDump.indent(), + inner = jsDump.indent(1); + if ( arr.join ) { + arr = arr.join( "," + s + inner ); + } + if ( !arr ) { + return pre + post; + } + return [ pre, inner + arr, base + post ].join(s); + } + function array( arr, stack ) { + var i = arr.length, ret = new Array(i); + this.up(); + while ( i-- ) { + ret[i] = this.parse( arr[i] , undefined , stack); + } + this.down(); + return join( "[", ret, "]" ); + } + + var reName = /^function (\w+)/, + jsDump = { + // type is used mostly internally, you can fix a (custom)type in advance + parse: function( obj, type, stack ) { + stack = stack || [ ]; + var inStack, res, + parser = this.parsers[ type || this.typeOf(obj) ]; + + type = typeof parser; + inStack = inArray( obj, stack ); + + if ( inStack !== -1 ) { + return "recursion(" + (inStack - stack.length) + ")"; + } + if ( type === "function" ) { + stack.push( obj ); + res = parser.call( this, obj, stack ); + stack.pop(); + return res; + } + return ( type === "string" ) ? parser : this.parsers.error; + }, + typeOf: function( obj ) { + var type; + if ( obj === null ) { + type = "null"; + } else if ( typeof obj === "undefined" ) { + type = "undefined"; + } else if ( QUnit.is( "regexp", obj) ) { + type = "regexp"; + } else if ( QUnit.is( "date", obj) ) { + type = "date"; + } else if ( QUnit.is( "function", obj) ) { + type = "function"; + } else if ( typeof obj.setInterval !== undefined && typeof obj.document !== "undefined" && typeof obj.nodeType === "undefined" ) { + type = "window"; + } else if ( obj.nodeType === 9 ) { + type = "document"; + } else if ( obj.nodeType ) { + type = "node"; + } else if ( + // native arrays + toString.call( obj ) === "[object Array]" || + // NodeList objects + ( typeof obj.length === "number" && typeof obj.item !== "undefined" && ( obj.length ? obj.item(0) === obj[0] : ( obj.item( 0 ) === null && typeof obj[0] === "undefined" ) ) ) + ) { + type = "array"; + } else if ( obj.constructor === Error.prototype.constructor ) { + type = "error"; + } else { + type = typeof obj; + } + return type; + }, + separator: function() { + return this.multiline ? this.HTML ? "<br />" : "\n" : this.HTML ? " " : " "; + }, + // extra can be a number, shortcut for increasing-calling-decreasing + indent: function( extra ) { + if ( !this.multiline ) { + return ""; + } + var chr = this.indentChar; + if ( this.HTML ) { + chr = chr.replace( /\t/g, " " ).replace( / /g, " " ); + } + return new Array( this._depth_ + (extra||0) ).join(chr); + }, + up: function( a ) { + this._depth_ += a || 1; + }, + down: function( a ) { + this._depth_ -= a || 1; + }, + setParser: function( name, parser ) { + this.parsers[name] = parser; + }, + // The next 3 are exposed so you can use them + quote: quote, + literal: literal, + join: join, + // + _depth_: 1, + // This is the list of parsers, to modify them, use jsDump.setParser + parsers: { + window: "[Window]", + document: "[Document]", + error: function(error) { + return "Error(\"" + error.message + "\")"; + }, + unknown: "[Unknown]", + "null": "null", + "undefined": "undefined", + "function": function( fn ) { + var ret = "function", + // functions never have name in IE + name = "name" in fn ? fn.name : (reName.exec(fn) || [])[1]; + + if ( name ) { + ret += " " + name; + } + ret += "( "; + + ret = [ ret, QUnit.jsDump.parse( fn, "functionArgs" ), "){" ].join( "" ); + return join( ret, QUnit.jsDump.parse(fn,"functionCode" ), "}" ); + }, + array: array, + nodelist: array, + "arguments": array, + object: function( map, stack ) { + var ret = [ ], keys, key, val, i; + QUnit.jsDump.up(); + keys = []; + for ( key in map ) { + keys.push( key ); + } + keys.sort(); + for ( i = 0; i < keys.length; i++ ) { + key = keys[ i ]; + val = map[ key ]; + ret.push( QUnit.jsDump.parse( key, "key" ) + ": " + QUnit.jsDump.parse( val, undefined, stack ) ); + } + QUnit.jsDump.down(); + return join( "{", ret, "}" ); + }, + node: function( node ) { + var len, i, val, + open = QUnit.jsDump.HTML ? "<" : "<", + close = QUnit.jsDump.HTML ? ">" : ">", + tag = node.nodeName.toLowerCase(), + ret = open + tag, + attrs = node.attributes; + + if ( attrs ) { + for ( i = 0, len = attrs.length; i < len; i++ ) { + val = attrs[i].nodeValue; + // IE6 includes all attributes in .attributes, even ones not explicitly set. + // Those have values like undefined, null, 0, false, "" or "inherit". + if ( val && val !== "inherit" ) { + ret += " " + attrs[i].nodeName + "=" + QUnit.jsDump.parse( val, "attribute" ); + } + } + } + ret += close; + + // Show content of TextNode or CDATASection + if ( node.nodeType === 3 || node.nodeType === 4 ) { + ret += node.nodeValue; + } + + return ret + open + "/" + tag + close; + }, + // function calls it internally, it's the arguments part of the function + functionArgs: function( fn ) { + var args, + l = fn.length; + + if ( !l ) { + return ""; + } + + args = new Array(l); + while ( l-- ) { + // 97 is 'a' + args[l] = String.fromCharCode(97+l); + } + return " " + args.join( ", " ) + " "; + }, + // object calls it internally, the key part of an item in a map + key: quote, + // function calls it internally, it's the content of the function + functionCode: "[code]", + // node calls it internally, it's an html attribute value + attribute: quote, + string: quote, + date: quote, + regexp: literal, + number: literal, + "boolean": literal + }, + // if true, entities are escaped ( <, >, \t, space and \n ) + HTML: false, + // indentation unit + indentChar: " ", + // if true, items in a collection, are separated by a \n, else just a space. + multiline: true + }; + + return jsDump; +}()); + +// from jquery.js +function inArray( elem, array ) { + if ( array.indexOf ) { + return array.indexOf( elem ); + } + + for ( var i = 0, length = array.length; i < length; i++ ) { + if ( array[ i ] === elem ) { + return i; + } + } + + return -1; +} + +/* + * Javascript Diff Algorithm + * By John Resig (http://ejohn.org/) + * Modified by Chu Alan "sprite" + * + * Released under the MIT license. + * + * More Info: + * http://ejohn.org/projects/javascript-diff-algorithm/ + * + * Usage: QUnit.diff(expected, actual) + * + * QUnit.diff( "the quick brown fox jumped over", "the quick fox jumps over" ) == "the quick <del>brown </del> fox <del>jumped </del><ins>jumps </ins> over" + */ +QUnit.diff = (function() { + /*jshint eqeqeq:false, eqnull:true */ + function diff( o, n ) { + var i, + ns = {}, + os = {}; + + for ( i = 0; i < n.length; i++ ) { + if ( !hasOwn.call( ns, n[i] ) ) { + ns[ n[i] ] = { + rows: [], + o: null + }; + } + ns[ n[i] ].rows.push( i ); + } + + for ( i = 0; i < o.length; i++ ) { + if ( !hasOwn.call( os, o[i] ) ) { + os[ o[i] ] = { + rows: [], + n: null + }; + } + os[ o[i] ].rows.push( i ); + } + + for ( i in ns ) { + if ( !hasOwn.call( ns, i ) ) { + continue; + } + if ( ns[i].rows.length === 1 && hasOwn.call( os, i ) && os[i].rows.length === 1 ) { + n[ ns[i].rows[0] ] = { + text: n[ ns[i].rows[0] ], + row: os[i].rows[0] + }; + o[ os[i].rows[0] ] = { + text: o[ os[i].rows[0] ], + row: ns[i].rows[0] + }; + } + } + + for ( i = 0; i < n.length - 1; i++ ) { + if ( n[i].text != null && n[ i + 1 ].text == null && n[i].row + 1 < o.length && o[ n[i].row + 1 ].text == null && + n[ i + 1 ] == o[ n[i].row + 1 ] ) { + + n[ i + 1 ] = { + text: n[ i + 1 ], + row: n[i].row + 1 + }; + o[ n[i].row + 1 ] = { + text: o[ n[i].row + 1 ], + row: i + 1 + }; + } + } + + for ( i = n.length - 1; i > 0; i-- ) { + if ( n[i].text != null && n[ i - 1 ].text == null && n[i].row > 0 && o[ n[i].row - 1 ].text == null && + n[ i - 1 ] == o[ n[i].row - 1 ]) { + + n[ i - 1 ] = { + text: n[ i - 1 ], + row: n[i].row - 1 + }; + o[ n[i].row - 1 ] = { + text: o[ n[i].row - 1 ], + row: i - 1 + }; + } + } + + return { + o: o, + n: n + }; + } + + return function( o, n ) { + o = o.replace( /\s+$/, "" ); + n = n.replace( /\s+$/, "" ); + + var i, pre, + str = "", + out = diff( o === "" ? [] : o.split(/\s+/), n === "" ? [] : n.split(/\s+/) ), + oSpace = o.match(/\s+/g), + nSpace = n.match(/\s+/g); + + if ( oSpace == null ) { + oSpace = [ " " ]; + } + else { + oSpace.push( " " ); + } + + if ( nSpace == null ) { + nSpace = [ " " ]; + } + else { + nSpace.push( " " ); + } + + if ( out.n.length === 0 ) { + for ( i = 0; i < out.o.length; i++ ) { + str += "<del>" + out.o[i] + oSpace[i] + "</del>"; + } + } + else { + if ( out.n[0].text == null ) { + for ( n = 0; n < out.o.length && out.o[n].text == null; n++ ) { + str += "<del>" + out.o[n] + oSpace[n] + "</del>"; + } + } + + for ( i = 0; i < out.n.length; i++ ) { + if (out.n[i].text == null) { + str += "<ins>" + out.n[i] + nSpace[i] + "</ins>"; + } + else { + // `pre` initialized at top of scope + pre = ""; + + for ( n = out.n[i].row + 1; n < out.o.length && out.o[n].text == null; n++ ) { + pre += "<del>" + out.o[n] + oSpace[n] + "</del>"; + } + str += " " + out.n[i].text + nSpace[i] + pre; + } + } + } + + return str; + }; +}()); + +// for CommonJS enviroments, export everything +if ( typeof exports !== "undefined" ) { + extend( exports, QUnit ); +} + +// get at whatever the global object is, like window in browsers +}( (function() {return this;}.call()) )); diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/plugin.properties b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..6c045656673904fb6b87b3bdff24dde50e512b8d --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/common-test/plugin.properties @@ -0,0 +1,3 @@ +webapp-folder = html +openbisui-contexts = modules-menu +label = common-test.js diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html new file mode 100644 index 0000000000000000000000000000000000000000..0debbe6edd1f38dfdc45e44bd9142864bb9a6c48 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html @@ -0,0 +1,20 @@ +<!DOCTYPE html> +<html> +<head> + <meta charset="utf-8"> + <title>Openbis-screening.js test</title> + <link rel="stylesheet" href="../common-test/qunit.css"> + + <script src="/openbis/resources/js/jquery.js"></script> + <script src="/openbis/resources/js/openbis.js"></script> + <script src="/openbis/resources/js/openbis-screening.js"></script> + <script src="../common-test/qunit.js"></script> + <script src="../common-test/common-test.js"></script> + <script src="openbis-screening-test.js"></script> + +</head> +<body> + <div id="qunit"></div> + <div id="qunit-fixture"></div> +</body> +</html> diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js new file mode 100644 index 0000000000000000000000000000000000000000..a11581d425723857367f7d6e2933a2c68c672fd8 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js @@ -0,0 +1,722 @@ +/* + * These tests should be run against openBIS instance + * with screening sprint server database version + */ + +var testProtocol = "http"; +var testHost = "localhost"; +var testPort = "20000"; +var testUrl = testProtocol + "://" + testHost + ":" + testPort; + +var testUserId = "openbis_screening_test_js"; +var testUserPassword = "password"; + +var createFacadeAndLogin = function(action, urlOrNull, timeoutOrNull){ + var url = typeof urlOrNull == "undefined" ? testUrl : urlOrNull; + createFacadeAndLoginForUserAndPassword(testUserId, testUserPassword, action, url, timeoutOrNull); +} + +var createExperimentIdentfier = function(identifierString){ + var parts = identifierString.split("/"); + + return { + "@type" : "ExperimentIdentifier", + "spaceCode" : parts[1], + "projectCode" : parts[2], + "experimentCode" : parts[3] + }; +} + +var createPlateIdentifier = function(identifierString){ + var parts = identifierString.split("/"); + + return { + "@type" : "PlateIdentifier", + "spaceCodeOrNull" : parts[1], + "plateCode" : parts[2] + }; +} + +var createMaterialIdentifier = function(identifierString){ + var parts = identifierString.split("/"); + + return { + "@type" : "MaterialIdentifierScreening", + "materialTypeIdentifier" : { + "@type" : "MaterialTypeIdentifierScreening", + "materialTypeCode" : parts[1] + }, + "materialCode" : parts[2] + }; +} + +var createMaterialTypeIdentifier = function(typeCode){ + return { + "@type" : "MaterialTypeIdentifierScreening", + "materialTypeCode" : typeCode + }; +} + +var createWellIdentifier = function(permId){ + return { + "@type" : "WellIdentifier", + "permId" : permId + }; +} + +var createWellPosition = function(wellRow, wellColumn){ + return { + "@type" : "WellPosition", + "wellRow" : wellRow, + "wellColumn" : wellColumn + }; +} + +var createImageSize = function(width, height){ + return { + "@type" : "ImageSize", + "width" : width, + "height" : height + }; +} + +var createLoadImageConfiguration = function(width, height){ + return { + "@type" : "LoadImageConfiguration", + "desiredImageSize" : createImageSize(width, height) + }; +} + +var createImageRepresentationFormat = function(dataSetCode, width, height){ + return { + "@type" : "ImageRepresentationFormat", + "dataSetCode" : dataSetCode, + "width" : width, + "height" : height + }; +} + +var createSizeCriterion = function(width, height, type){ + return { + "@type" : "SizeCriterion", + "width" : width, + "height" : height, + "type" : type + }; +} + +var listImageDatasetReferencesForPlateIdentifier = function(facade, plateIdentifier, action){ + var plateIdentifiers = [ createPlateIdentifier(plateIdentifier) ]; + + facade.listImageDatasets(plateIdentifiers, function(response){ + action(response.result); + }); +} + +var listImageReferencesForPlateIdentifierAndWellPositionAndChannel = function(facade, plateIdentifier, wellRow, wellColumn, channel, action){ + listImageDatasetReferencesForPlateIdentifier(facade, plateIdentifier, function(dataSetReferences){ + var dataSetIdentifier = dataSetReferences[0]; + var wellPositions = [ createWellPosition(wellRow, wellColumn) ]; + + facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel(dataSetIdentifier, wellPositions, channel, function(response){ + action(response.result); + }); + }); +} + +var listImageReferencesAndFormatForPlateIdentifierAndWellPositionAndChannel = function(facade, plateIdentifier, wellRow, wellColumn, channel, action){ + listImageDatasetReferencesForPlateIdentifier(facade, plateIdentifier, function(dataSetReferences){ + var dataSetIdentifier = dataSetReferences[0]; + var wellPositions = [ createWellPosition(wellRow, wellColumn) ]; + + facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel(dataSetIdentifier, wellPositions, channel, function(imageReferencesResponse){ + var imageDataSets = [ dataSetIdentifier ]; + + facade.listAvailableImageRepresentationFormats(imageDataSets, function(formatResponse){ + action({ + imageReferences : imageReferencesResponse.result, + format : formatResponse.result[0].imageRepresentationFormats[0] + }); + }); + }); + }); +} + +test("listPlates()", function(){ + createFacadeAndLogin(function(facade){ + + facade.listPlates(function(response){ + assertObjectsCount(response.result, 4); + facade.close(); + }); + }); +}); + + + +test("listPlatesForExperiment()", function(){ + createFacadeAndLogin(function(facade){ + var experimentIdentifier = createExperimentIdentfier("/PLATONIC/SCREENING-EXAMPLES/EXP-1"); + + facade.listPlatesForExperiment(experimentIdentifier, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithValues(response.result, "plateCode", ["PLATE-1","PLATE-2"]); + facade.close(); + }); + }); +}); + +test("getPlateMetadataList()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1"), createPlateIdentifier("/PLATONIC/PLATE-2") ]; + + facade.getPlateMetadataList(plateIdentifiers, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithValues(response.result, "plateCode", ["PLATE-1","PLATE-2"]); + facade.close(); + }); + }); +}); + +test("listAllExperiments()", function(){ + createFacadeAndLogin(function(facade){ + facade.listAllExperiments(function(response){ + assertObjectsCount(response.result, 4); + assertObjectsWithValues(response.result, "experimentCode", ["EXP-1","EXP-2","TEST-EXPERIMENT","TEST-EXPERIMENT-2"]); + facade.close(); + }); + }); +}); + +test("listExperimentsVisibleToUser()", function(){ + createFacadeAndLogin(function(facade){ + var userId = "test_space_admin"; + + facade.listExperimentsVisibleToUser(userId, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithValues(response.result, "experimentCode", ["TEST-EXPERIMENT","TEST-EXPERIMENT-2"]); + facade.close(); + }); + }); +}); + +test("listFeatureVectorDatasets()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "datasetCode", ["20130412153659994-391"]); + facade.close(); + }); + }); +}); + +test("listImageDatasets()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listImageDatasets(plateIdentifiers, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "datasetCode", [ "20130412143121081-200"]); + facade.close(); + }); + }); +}); + +test("listRawImageDatasets()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listRawImageDatasets(plateIdentifiers, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "datasetCode", [ "20130412143121081-200"]); + facade.close(); + }); + }); +}); + +test("listSegmentationImageDatasets()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listSegmentationImageDatasets(plateIdentifiers, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "datasetCode", [ "20130412153119864-385" ]); + facade.close(); + }); + }); +}); + +test("getDatasetIdentifiers()", function(){ + createFacadeAndLogin(function(facade){ + var datasetCodes = ["20130412143119901-199", "20130412143121081-200"]; + + facade.getDatasetIdentifiers(datasetCodes, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithValues(response.result, "datasetCode", datasetCodes); + facade.close(); + }); + }); +}); + +test("listPlateWellsForExperimentAndMaterial()", function(){ + createFacadeAndLogin(function(facade){ + var experimentIdentifer = createExperimentIdentfier("/PLATONIC/SCREENING-EXAMPLES/EXP-1"); + var materialIdentifier = createMaterialIdentifier("/GENE/G1"); + var findDatasets = true; + + facade.listPlateWellsForExperimentAndMaterial(experimentIdentifer, materialIdentifier, findDatasets, function(response){ + assertObjectsCount(response.result, 98); + assertObjectsWithValuesFunction(response.result, "plateCode", function(result){ + return result.experimentPlateIdentifier.plateCode; + }, ["PLATE-1", "PLATE-2"]); + facade.close(); + }); + }); +}); + +test("listPlateWellsForMaterial()", function(){ + createFacadeAndLogin(function(facade){ + var materialIdentifier = createMaterialIdentifier("/GENE/G1"); + var findDatasets = true; + + facade.listPlateWellsForMaterial(materialIdentifier, findDatasets, function(response){ + assertObjectsCount(response.result, 196); + assertObjectsWithValuesFunction(response.result, "plateCode", function(result){ + return result.experimentPlateIdentifier.plateCode; + }, ["PLATE-1", "PLATE-1A", "PLATE-2"]); + facade.close(); + }); + }); +}); + +test("listPlateWells()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifier = createPlateIdentifier("/PLATONIC/PLATE-1"); + + facade.listPlateWells(plateIdentifier, function(response){ + assertObjectsCount(response.result, 79); + facade.close(); + }); + }); +}); + +test("getWellSample()", function(){ + createFacadeAndLogin(function(facade){ + var wellIdentifier = createWellIdentifier("20130412140151999-35"); + + facade.getWellSample(wellIdentifier, function(response){ + equal(response.result.code, "PLATE-1:B2", "Well code is correct"); + facade.close(); + }); + }); +}); + +test("getPlateSample()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifier = createPlateIdentifier("/PLATONIC/PLATE-1"); + + facade.getPlateSample(plateIdentifier, function(response){ + equal(response.result.code, "PLATE-1", "Plate code is correct"); + facade.close(); + }); + }); +}); + +test("listPlateMaterialMapping()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + var materialTypeIdentifierOrNull = createMaterialTypeIdentifier("GENE"); + + facade.listPlateMaterialMapping(plateIdentifiers, materialTypeIdentifierOrNull, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValuesFunction(response.result, "plateCode", function(result){ + return result.plateIdentifier.plateCode; + }, ["PLATE-1"]); + facade.close(); + }); + }); +}); + +test("getExperimentImageMetadata()", function(){ + createFacadeAndLogin(function(facade){ + var experimentIdentifier = createExperimentIdentfier("/PLATONIC/SCREENING-EXAMPLES/EXP-1"); + + facade.getExperimentImageMetadata(experimentIdentifier, function(response){ + equal(response.result.identifier.experimentCode, "EXP-1", "Experiment code is correct"); + equal(response.result.plateGeometry.width, 12, "Plate width is correct"); + equal(response.result.plateGeometry.height, 8, "Plate height is correct"); + facade.close(); + }); + }); +}); + +/* + +TODO: these methods do not work for a container dataset + +test("listAvailableFeatureCodes()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + var featureDatasets = response.result; + + facade.listAvailableFeatureCodes(featureDatasets, function(response){ + assertObjectsCount(response.result, 4); + assertArrays(response.result, ["ROW_NUMBER", "COLUMN_NUMBER", "TPU", "STATE"], "Feature codes are correct"); + facade.close(); + }); + }); + }); +}); + +test("listAvailableFeatures()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + var featureDatasets = response.result; + + facade.listAvailableFeatures(featureDatasets, function(response){ + assertObjectsCount(response.result, 4); + assertObjectsWithValues(response.result, 'code', ["ROW_NUMBER", "COLUMN_NUMBER", "TPU", "STATE"]); + facade.close(); + }); + }); + }); +}); + +test("loadFeaturesForDatasetWellReferences()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + + // little hack to avoid creating FeatureVectorDatasetWellReference + // object by hand as it is pretty complex to do + var featureVectorDataset = response.result[0]; + featureVectorDataset["@type"] = "FeatureVectorDatasetWellReference"; + featureVectorDataset["wellPosition"] = createWellPosition(1, 2); + + var datasetWellReferences = [ featureVectorDataset ]; + var featureCodes = ["ROW_NUMBER", "STATE"]; + + facade.loadFeaturesForDatasetWellReferences(datasetWellReferences, featureCodes, function(response){ + assertObjectsCount(response.result, 1); + assertArrays(response.result[0].featureCodes, featureCodes, 'Feature codes are correct'); + equal(response.result[0].wellPosition.wellRow, 1, 'Well row is correct'); + equal(response.result[0].wellPosition.wellColumn, 2, 'Well column is correct'); + facade.close(); + }); + }); + }); +}); + +*/ + +test("loadFeatures()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + var featureDatasets = response.result; + var featureCodes = ["ROW_NUMBER", "STATE"]; + + facade.loadFeatures(featureDatasets, featureCodes, function(response){ + assertObjectsCount(response.result, 1); + assertArrays(response.result[0].featureCodes, featureCodes, 'Feature codes are correct'); + equal(response.result[0].featureVectors.length, 96, 'Feature vectors count is correct'); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForImageReferencesAndImageConversion()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){ + var convertToPng = false; + + facade.loadImagesBase64ForImageReferencesAndImageConversion(imageReferences, convertToPng, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadThumbnailImagesBase64ForImageReferences()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){ + facade.loadThumbnailImagesBase64ForImageReferences(imageReferences, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForImageReferencesAndImageSize()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){ + var imageSize = createImageSize(100, 100); + + facade.loadImagesBase64ForImageReferencesAndImageSize(imageReferences, imageSize, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForImageReferences()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){ + facade.loadImagesBase64ForImageReferences(imageReferences, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForImageReferencesAndImageConfiguration()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){ + var configuration = createLoadImageConfiguration(100, 100); + + facade.loadImagesBase64ForImageReferencesAndImageConfiguration(imageReferences, configuration, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForImageReferencesAndImageRepresentationFormat()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesAndFormatForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(results){ + facade.loadImagesBase64ForImageReferencesAndImageRepresentationFormat(results.imageReferences, results.format, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForImageReferencesAndImageRepresentationFormatCriteria()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){ + var criteria = [ createSizeCriterion(100, 100, 'SMALLEST_COVERING_BOUNDING_BOX') ]; + + facade.loadImagesBase64ForImageReferencesAndImageRepresentationFormatCriteria(imageReferences, criteria, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("listImageMetadata()", function(){ + createFacadeAndLogin(function(facade){ + listImageDatasetReferencesForPlateIdentifier(facade, "/PLATONIC/PLATE-1", function(imageDataSets){ + facade.listImageMetadata(imageDataSets, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValuesFunction(response.result, "datasetCode", function(result){ + return result.imageDataset.datasetCode; + }, ["20130412143121081-200"]); + facade.close(); + }); + }); + }); +}); + +test("listAvailableImageRepresentationFormats()", function(){ + createFacadeAndLogin(function(facade){ + listImageDatasetReferencesForPlateIdentifier(facade, "/PLATONIC/PLATE-1", function(imageDataSets){ + facade.listAvailableImageRepresentationFormats(imageDataSets, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValuesFunction(response.result, "datasetCode", function(result){ + return result.dataset.datasetCode; + }, ["20130412143121081-200"]); + facade.close(); + }); + }); + }); +}); + +test("loadPhysicalThumbnailsBase64ForImageReferencesAndImageRepresentationFormat()", function(){ + createFacadeAndLogin(function(facade){ + listImageReferencesAndFormatForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(results){ + facade.loadPhysicalThumbnailsBase64ForImageReferencesAndImageRepresentationFormat(results.imageReferences, results.format, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize()", function(){ + createFacadeAndLogin(function(facade){ + listImageDatasetReferencesForPlateIdentifier(facade, "/PLATONIC/PLATE-1", function(imageDataSets){ + var dataSetIdentifier = imageDataSets[0]; + var wellPositions = [ createWellPosition(1, 1) ]; + var channel = "DAPI"; + var thumbnailSizeOrNull = createImageSize(100, 100); + + facade.loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize(dataSetIdentifier, wellPositions , channel, thumbnailSizeOrNull, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +/* + +TODO: this method works only for a container dataset + +*/ +test("loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize()", function(){ + createFacadeAndLogin(function(facade){ + var datasetCodes = ["20130417094937144-429"]; + + facade.getDatasetIdentifiers(datasetCodes, function(response){ + var datasetIdentifier = response.result[0]; + var channel = "RGB"; + var thumbnailSizeOrNull = createImageSize(100, 100); + + facade.loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize(datasetIdentifier, channel, thumbnailSizeOrNull, function(response){ + assertObjectsCount(response.result, 1); + facade.close(); + }); + }); + }); +}); + +/* + +TODO: this method works only for a container dataset + +*/ +test("loadThumbnailImagesBase64ForDataSetIdentifierAndChannels()", function(){ + createFacadeAndLogin(function(facade){ + var datasetCodes = ["20130417094937144-429"]; + + facade.getDatasetIdentifiers(datasetCodes, function(response){ + var datasetIdentifier = response.result[0]; + var channels = ["RGB"]; + + facade.loadThumbnailImagesBase64ForDataSetIdentifierAndChannels(datasetIdentifier, channels, function(response){ + assertObjectsCount(response.result, 1); + facade.close(); + }); + }); + }); +}); + +test("listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel()", function(){ + createFacadeAndLogin(function(facade){ + listImageDatasetReferencesForPlateIdentifier(facade, "/PLATONIC/PLATE-1", function(imageDataSets){ + var dataSetIdentifier = imageDataSets[0]; + var wellPositions = [ createWellPosition(1, 1) ]; + var channel = "DAPI"; + + facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel(dataSetIdentifier, wellPositions , channel, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +test("listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels()", function(){ + createFacadeAndLogin(function(facade){ + listImageDatasetReferencesForPlateIdentifier(facade, "/PLATONIC/PLATE-1", function(imageDataSets){ + var dataSetIdentifier = imageDataSets[0]; + var wellPositions = [ createWellPosition(1, 1) ]; + var channels = ["DAPI"]; + + facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels(dataSetIdentifier, wellPositions , channels, function(response){ + assertObjectsCount(response.result, 9); + facade.close(); + }); + }); + }); +}); + +/* + +TODO: this method works only for a container dataset + +*/ +test("listImageReferencesForDataSetIdentifierAndChannel()", function(){ + createFacadeAndLogin(function(facade){ + var datasetCodes = ["20130417094937144-429"]; + + facade.getDatasetIdentifiers(datasetCodes, function(response){ + var datasetIdentifier = response.result[0]; + var channel = "RGB"; + + facade.listImageReferencesForDataSetIdentifierAndChannel(datasetIdentifier, channel, function(response){ + assertObjectsCount(response.result, 1); + facade.close(); + }); + }); + }); +}); + +/* + +TODO: this method works only for a container dataset + +*/ +test("listImageReferencesForDataSetIdentifierAndChannels()", function(){ + createFacadeAndLogin(function(facade){ + var datasetCodes = ["20130417094937144-429"]; + + facade.getDatasetIdentifiers(datasetCodes, function(response){ + var datasetIdentifier = response.result[0]; + var channels = ["RGB"]; + + facade.listImageReferencesForDataSetIdentifierAndChannels(datasetIdentifier, channels, function(response){ + assertObjectsCount(response.result, 1); + facade.close(); + }); + }); + }); +}); + +test("listAvailableFeatureLists()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + var featureDataset = response.result[0]; + + facade.listAvailableFeatureLists(featureDataset, function(response){ + assertObjectsCount(response.result, 2); + assertArrays(response.result, ["BARCODE_AND_STATE_FEATURE_LIST","NUMBER_FEATURE_LIST"], "Feature lists are correct"); + facade.close(); + }); + }); + }); +}); + +test("getFeatureList()", function(){ + createFacadeAndLogin(function(facade){ + var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ]; + + facade.listFeatureVectorDatasets(plateIdentifiers, function(response){ + var featureDataset = response.result[0]; + + facade.getFeatureList(featureDataset, "BARCODE_AND_STATE_FEATURE_LIST", function(response){ + assertObjectsCount(response.result, 2); + assertArrays(response.result, ["barcode","STATE"], "Feature list items are correct"); + facade.close(); + }); + }); + }); +}); diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..c8e67174428c80e174875feac7686429df6686e6 --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties @@ -0,0 +1,3 @@ +webapp-folder = html +openbisui-contexts = modules-menu +label = openbis-screening-test.js diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/html/index.html b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/html/index.html new file mode 100644 index 0000000000000000000000000000000000000000..e981d873cf3c68c87d974384635ed7a2486ef19c --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/html/index.html @@ -0,0 +1,19 @@ +<!DOCTYPE html> +<html> +<head> + <meta charset="utf-8"> + <title>Openbis.js test</title> + <link rel="stylesheet" href="../common-test/qunit.css"> + + <script src="/openbis/resources/js/jquery.js"></script> + <script src="/openbis/resources/js/openbis.js"></script> + <script src="../common-test/qunit.js"></script> + <script src="../common-test/common-test.js"></script> + <script src="openbis-test.js"></script> + +</head> +<body> + <div id="qunit"></div> + <div id="qunit-fixture"></div> +</body> +</html> diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/html/openbis-test.js b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/html/openbis-test.js new file mode 100644 index 0000000000000000000000000000000000000000..92b42f326a54e3334a7736d55af4ae89d7e5c1cc --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/html/openbis-test.js @@ -0,0 +1,1876 @@ +/* + * These tests should be run against openBIS instance + * with screening sprint server database version + */ + +var testProtocol = "http"; +var testHost = "localhost"; +var testPort = "20000"; +var testUrl = testProtocol + "://" + testHost + ":" + testPort; + +var testUserId = "openbis_test_js"; +var testUserPassword = "password"; + +var createFacadeAndLogin = function(action, urlOrNull, timeoutOrNull){ + var url = typeof urlOrNull == "undefined" ? testUrl : urlOrNull; + createFacadeAndLoginForUserAndPassword(testUserId, testUserPassword, action, url, timeoutOrNull); +} + +var createMaterialIdentifier = function(identifierString){ + var parts = identifierString.split("/"); + + return { + "@type" : "MaterialIdentifierGeneric", + "materialTypeIdentifier" : { + "@type" : "MaterialTypeIdentifierGeneric", + "materialTypeCode" : parts[1] + }, + "materialCode" : parts[2] + }; +} + +var createMetaprojectIdentifierId = function(identifierString){ + return { + "@type" : "MetaprojectIdentifierId", + "identifier" : identifierString + }; +} + +var createProjectIdentifierId = function(identifierString){ + return { + "@type" : "ProjectIdentifierId", + "identifier" : identifierString + }; +} + +var createExperimentIdentifierId = function(identifierString){ + return { + "@type" : "ExperimentIdentifierId", + "identifier" : identifierString + }; +} + +var createSampleIdentifierId = function(identifierString){ + return { + "@type" : "SampleIdentifierId", + "identifier" : identifierString + }; +} + +var createNewVocabularyTerm = function(code, previousTermOrdinal){ + return { + "@type" : "NewVocabularyTerm", + "code" : code, + "previousTermOrdinal" : previousTermOrdinal + }; +} + +var createWebAppSettings = function(webAppId, settings){ + return { + "@type" : "WebAppSettings", + "webAppId" : webAppId, + "settings" : settings + }; +} + +var createDataSetFileDTO = function(dataSetCode, path, isRecursive){ + return { + "@type" : "DataSetFileDTO", + "dataSetCode" : dataSetCode, + "path" : path, + "isRecursive" : isRecursive + }; +} + +var createNewMetaproject = function(facade, identifierString, action){ + var parts = identifierString.split("/"); + var ownerId = parts[1]; + var name = parts[2]; + + facade.listMetaprojects(function(response){ + var metaproject = findMetaproject(response.result, identifierString); + + if(metaproject){ + var id = createMetaprojectIdentifierId(identifierString); + + facade.deleteMetaproject(id, function(response){ + facade.createMetaproject(name, null, function(response){ + action(response); + }); + }); + }else{ + facade.createMetaproject(name, null, function(response){ + action(response); + }); + } + }); +} + +var findMetaproject = function(metaprojects, identifierString){ + var parts = identifierString.split("/"); + var ownerId = parts[1]; + var name = parts[2]; + + return metaprojects.filter(function(metaproject){ + return metaproject.ownerId == ownerId && metaproject.name == name; + })[0]; +} + +var findVocabulary = function(vocabularies, code){ + return vocabularies.filter(function(vocabulary){ + return vocabulary.code == code; + })[0]; +}; + +var findVocabularyTerm = function(vocabulary, code){ + return vocabulary.terms.filter(function(term){ + return term.code == code; + })[0]; +}; + +var findQuery = function(queries, name){ + return queries.filter(function(query){ + return query.name == name; + })[0]; +} + +var findVocabularyMaxOrdinal = function(vocabulary){ + var max = 0; + vocabulary.terms.forEach(function(term){ + max = Math.max(max, term.ordinal); + }); + return max; +}; + +var downloadFile = function(url, action){ + $.ajax({ + url: url, + cache: false, + dataType: "text", + success: function(data) { + action(data); + }, + error: function(){ + action(null); + } + }); +} + +var isHtml = function(page){ + return page && page.indexOf("<html>") != -1; +} + +var uploadFileToSessionWorkspace = function(facade, fileName, fileContent, dataStoreCode, action){ + facade._internal.getDataStoreUrlForDataStoreCode(dataStoreCode, function(dataStoreUrl){ + var uploadUrl = dataStoreUrl + "/session_workspace_file_upload" + + "?filename=" + fileName + + "&id=0" + + "&startByte=0" + + "&endByte=0" + + "&sessionID=" + facade.getSession(); + + $.ajax({ + url : uploadUrl, + type : "POST", + data : fileContent, + contentType : "multipart/form-data" + }).done(function(response){ + action(response); + }); + }); +} + +var uploadGraphToSessionWorkspace = function(facade, dataStoreCodeOrNull, action) { + var fileName = generateRandomString(); + var fileContent = "" + + +"row col col1 col2 col3\n\ +1 A 0 1 2\n\ +1 B 3 4 5\n\ +2 A 6 7 8\n\ +2 B 9 10 11\n\ +3 A 12 13 14\n\ +3 B 15 16 17\n\ +4 A 18 19 20\n\ +4 B 21 22 23\n\ +5 A 23 25 26\n\ +5 B 27 28 29" + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCodeOrNull, function(){ + var graphType = "HISTOGRAM"; + var graphTitle = "Test graph"; + + var graphConfig = new openbisGraphConfig(fileName, graphType, graphTitle); + graphConfig["col-z"] = "<col1>Bins"; + graphConfig["bins"] = "13"; + graphConfig["delimiter"] = "\t"; + + action(graphConfig); + }); +} + +var generateRandomString = function(){ + return Math.random().toString(); +} + +test("new openbis()", function(){ + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server without url"); + facade.close(); + }, null); +}); + +test("new openbis(/openbis)", function(){ + var url = "/openbis"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(/openbis/openbis)", function(){ + var url = "/openbis/openbis"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(protocol, host, port)", function(){ + var url = testProtocol + "://" + testHost + ":" + testPort; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(protocol, host, port, /openbis)", function(){ + var url = testProtocol + "://" + testHost + ":" + testPort + "/openbis"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(protocol, host, port, /openbis/)", function(){ + var url = testProtocol + "://" + testHost + ":" + testPort + "/openbis/"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(protocol, host, port, /openbis/openbis)", function(){ + var url = testProtocol + "://" + testHost + ":" + testPort + "/openbis/openbis"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(protocol, host, port, /openbis/openbis/)", function(){ + var url = testProtocol + "://" + testHost + ":" + testPort + "/openbis/openbis/"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("new openbis(protocol, host, port, /someRandomPath/)", function(){ + var url = testProtocol + "://" + testHost + ":" + testPort + "/someRandomPath/"; + createFacadeAndLogin(function(facade){ + ok(true, "Successfully connected to server with url: " + url); + facade.close(); + }, url); +}); + +test("logout", function(){ + createFacade(function(facade){ + facade.logout(function(){ + equal(facade.getSession(), null, 'Session is empty after logout'); + + facade.restoreSession(); + equal(facade.getSession(), null, 'Restored session is empty after logout'); + + facade.isSessionActive(function(response){ + equal(response.result, false, 'Session is inactive after logout'); + facade.close(); + }); + }); + }, testUrl); +}); + +test("login", function() { + createFacade(function(facade){ + facade.login(testUserId, testUserPassword, function(response){ + ok(response.result,'Session from server is not empty after login'); + ok(facade.getSession(), 'Session from facade is not empty after login'); + + facade.isSessionActive(function(response){ + equal(response.result, true,'Session is active after login'); + facade.close(); + }); + }); + }, testUrl); +}); + +test("cookies", function() { + createFacade(function(facade){ + facade.useSession('session-1'); + facade.rememberSession(); + equal(facade.getSession(), 'session-1', 'Session 1 used') + + facade.useSession('session-2'); + equal(facade.getSession(), 'session-2', 'Session 2 used') + + facade.restoreSession(); + equal(facade.getSession(), 'session-1', 'Session 1 restored') + facade.close(); + }, testUrl); +}); + +test("listNamedRoleSets()", function(){ + createFacadeAndLogin(function(facade){ + facade.listNamedRoleSets(function(response){ + ok(response.result, 'Got results'); + facade.close(); + }); + }); +}); + +test("listSpacesWithProjectsAndRoleAssignments()", function(){ + createFacadeAndLogin(function(facade){ + facade.listSpacesWithProjectsAndRoleAssignments(null, function(response){ + assertObjectsCount(response.result, 2); + facade.close(); + }); + }); +}); + +test("searchForSamples()", function(){ + createFacadeAndLogin(function(facade){ + + var sampleCodes = ['PLATE-1', 'PLATE-1A']; + var searchCriteria = createSearchCriteriaForCodes(sampleCodes); + + facade.searchForSamples(searchCriteria, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, sampleCodes); + assertObjectsWithProperties(response.result); + facade.close(); + }); + }); +}); + +test("searchForSamplesWithFetchOptions()", function(){ + createFacadeAndLogin(function(facade){ + + var sampleCodes = ['PLATE-1', 'PLATE-1A']; + var searchCriteria = createSearchCriteriaForCodes(sampleCodes); + var fetchOptions = [ 'BASIC' ]; + + facade.searchForSamplesWithFetchOptions(searchCriteria, fetchOptions, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, sampleCodes); + assertObjectsWithoutProperties(response.result); + facade.close(); + }); + }); +}); + +test("searchForSamplesOnBehalfOfUser()", function(){ + createFacadeAndLogin(function(facade){ + + var sampleCodes = ['PLATE-1', 'PLATE-1A'] + var searchCriteria = createSearchCriteriaForCodes(sampleCodes) + var fetchOptions = [ 'BASIC' ]; + var userId = 'test_space_admin'; + + facade.searchForSamplesOnBehalfOfUser(searchCriteria, fetchOptions, userId, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ 'PLATE-1A' ]); + assertObjectsWithoutProperties(response.result); + facade.close(); + }); + }); +}); + +test("filterSamplesVisibleToUser()", function(){ + createFacadeAndLogin(function(facade){ + + var sampleCodes = ['PLATE-1', 'PLATE-1A']; + var searchCriteria = createSearchCriteriaForCodes(sampleCodes); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + var userId = 'test_space_admin'; + + facade.filterSamplesVisibleToUser(samples, userId, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ 'PLATE-1A' ]); + assertObjectsWithProperties(response.result); + facade.close(); + }); + }); + }); +}); + +test("listSamplesForExperiment()", function(){ + createFacadeAndLogin(function(facade){ + var experimentIdentifier = '/PLATONIC/SCREENING-EXAMPLES/EXP-1'; + + facade.listSamplesForExperiment(experimentIdentifier, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, [ 'PLATE-1', 'PLATE-2' ]); + facade.close(); + }); + }); +}); + +test("listDataSetsForSamples()", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['PLATE-1']); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + + facade.listDataSetsForSamples(samples, function(response){ + assertObjectsCount(response.result, 8); + facade.close(); + }); + }); + }); +}); + +test("listExperiments()", function(){ + createFacadeAndLogin(function(facade){ + facade.listProjects(function(response){ + var projects = response.result.filter(function(project){ + return project.code == 'SCREENING-EXAMPLES'; + }); + var experimentType = 'MICROSCOPY_PLATONIC'; + + facade.listExperiments(projects, experimentType, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ 'EXP-2' ]); + facade.close(); + }); + }); + }); +}); + +test("listExperimentsHavingSamples()", function(){ + createFacadeAndLogin(function(facade){ + facade.listProjects(function(response){ + var projects = response.result.filter(function(project){ + return project.code == 'SCREENING-EXAMPLES'; + }); + var experimentType = 'MICROSCOPY_PLATONIC'; + + facade.listExperimentsHavingSamples(projects, experimentType, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ 'EXP-2' ]); + facade.close(); + }); + }); + }); +}); + +test("listExperimentsHavingDataSets()", function(){ + createFacadeAndLogin(function(facade){ + facade.listProjects(function(response){ + var projects = response.result.filter(function(project){ + return project.code == 'SCREENING-EXAMPLES'; + }); + var experimentType = 'MICROSCOPY_PLATONIC'; + + facade.listExperimentsHavingDataSets(projects, experimentType, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ 'EXP-2' ]); + facade.close(); + }); + }); + }); +}); + +test("filterExperimentsVisibleToUser()", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['EXP-1','TEST-EXPERIMENT']); + + facade.searchForExperiments(searchCriteria, function(response){ + var experiments = response.result; + var userId = 'test_space_admin'; + + facade.filterExperimentsVisibleToUser(experiments, userId, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ 'TEST-EXPERIMENT' ]); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForSample()", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['PLATE-1']); + + facade.searchForSamples(searchCriteria, function(response){ + var sample = response.result[0]; + var restrictToDirectlyConnected = true; + + facade.listDataSetsForSample(sample, restrictToDirectlyConnected, function(response){ + assertObjectsCount(response.result, 8); + facade.close(); + }); + }); + }); +}); + +test("listDataStores()", function(){ + createFacadeAndLogin(function(facade){ + facade.listDataStores(function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, [ 'DSS1','DSS2' ]); + facade.close(); + }); + }); +}); + +test("getDefaultPutDataStoreBaseURL()", function(){ + createFacadeAndLogin(function(facade){ + facade.getDefaultPutDataStoreBaseURL(function(response){ + equal(response.result, "http://localhost:20001", 'URL is correct') + facade.close(); + }); + }); +}); + +test("tryGetDataStoreBaseURL()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = '20130415093804724-403'; + + facade.tryGetDataStoreBaseURL(dataSetCode, function(response){ + equal(response.result, "http://localhost:20002", 'URL is correct') + facade.close(); + }); + }); +}); + +test("getDataStoreBaseURLs()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCodes = [ '20130412152036861-380', '20130415093804724-403' ]; + + facade.getDataStoreBaseURLs(dataSetCodes, function(response){ + assertObjectsCount(response.result, 2); + + assertObjectsWithValuesFunction(response.result, "dataStoreURL", function(result){ + return result.dataStoreURL; + }, ["http://localhost:20001","http://localhost:20002"]); + + assertObjectsWithValuesFunction(response.result, "dataSetCodes", function(result){ + return result.dataSetCodes; + }, ['20130412152036861-380','20130415093804724-403']); + + facade.close(); + }); + }); +}); + +test("listDataSetTypes()", function(){ + createFacadeAndLogin(function(facade){ + facade.listDataSetTypes(function(response){ + assertObjectsCount(response.result, 27); + facade.close(); + }); + }); +}); + +test("listSampleTypes()", function(){ + createFacadeAndLogin(function(facade){ + facade.listSampleTypes(function(response){ + assertObjectsCount(response.result, 13); + facade.close(); + }); + }); +}); + +test("listExperimentTypes()", function(){ + createFacadeAndLogin(function(facade){ + facade.listExperimentTypes(function(response){ + assertObjectsCount(response.result, 5); + facade.close(); + }); + }); +}); + +test("listVocabularies()", function(){ + createFacadeAndLogin(function(facade){ + facade.listVocabularies(function(response){ + assertObjectsCount(response.result, 25); + facade.close(); + }); + }); +}); + +test("listDataSetsForSamplesWithConnections() with parents", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['TEST-SAMPLE-2']); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + var connectionsToGet = [ 'PARENTS' ]; + + facade.listDataSetsForSamplesWithConnections(samples, connectionsToGet, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ['20130415093804724-403']); + assertObjectsWithParentCodes(response.result); + assertObjectsWithoutChildrenCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForSamplesWithConnections() with children", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['TEST-SAMPLE-2']); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + var connectionsToGet = [ 'CHILDREN' ]; + + facade.listDataSetsForSamplesWithConnections(samples, connectionsToGet, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ['20130415093804724-403']); + assertObjectsWithoutParentCodes(response.result); + assertObjectsWithChildrenCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForSamplesWithConnections() with parents and children", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['TEST-SAMPLE-2']); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + var connectionsToGet = [ 'PARENTS', 'CHILDREN' ]; + + facade.listDataSetsForSamplesWithConnections(samples, connectionsToGet, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ['20130415093804724-403']); + assertObjectsWithParentCodes(response.result); + assertObjectsWithChildrenCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForSamplesWithConnections() without parents and children", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['TEST-SAMPLE-2']); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + var connectionsToGet = [ ]; + + facade.listDataSetsForSamplesWithConnections(samples, connectionsToGet, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ['20130415093804724-403']); + assertObjectsWithoutParentCodes(response.result); + assertObjectsWithoutChildrenCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForSamplesOnBehalfOfUser()", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['PLATE-1, TEST-SAMPLE-2']); + + facade.searchForSamples(searchCriteria, function(response){ + var samples = response.result; + var connectionsToGet = [ 'PARENTS' ]; + var userId = 'test_space_admin'; + + facade.listDataSetsForSamplesOnBehalfOfUser(samples, connectionsToGet, userId, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ['20130415093804724-403']); + assertObjectsWithParentCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForExperiments()", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['EXP-1','TEST-EXPERIMENT-2']); + + facade.searchForExperiments(searchCriteria, function(response){ + var experiments = response.result; + var connectionsToGet = [ 'PARENTS' ]; + + facade.listDataSetsForExperiments(experiments, connectionsToGet, function(response){ + assertObjectsCount(response.result, 15); + assertObjectsWithParentCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("listDataSetsForExperimentsOnBehalfOfUser()", function(){ + createFacadeAndLogin(function(facade){ + var searchCriteria = createSearchCriteriaForCodes(['EXP-1','TEST-EXPERIMENT-2']); + + facade.searchForExperiments(searchCriteria, function(response){ + var experiments = response.result; + var connectionsToGet = [ 'PARENTS' ]; + var userId = 'test_space_admin'; + + facade.listDataSetsForExperimentsOnBehalfOfUser(experiments, connectionsToGet, userId, function(response){ + assertObjectsCount(response.result, 4); + assertObjectsWithParentCodes(response.result); + facade.close(); + }); + }); + }); +}); + +test("getDataSetMetaData()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCodes = [ '20130415093804724-403', '20130415100158230-407' ]; + + facade.getDataSetMetaData(dataSetCodes, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, dataSetCodes); + assertObjectsWithProperties(response.result); + facade.close(); + }); + }); +}); + +test("getDataSetMetaDataWithFetchOptions()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCodes = [ '20130415093804724-403', '20130415100158230-407' ]; + var fetchOptions = [ 'BASIC' ]; + + facade.getDataSetMetaDataWithFetchOptions(dataSetCodes, fetchOptions, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, dataSetCodes); + assertObjectsWithoutProperties(response.result); + facade.close(); + }); + }); +}); + +test("searchForDataSets()", function(){ + createFacadeAndLogin(function(facade){ + + var dataSetCodes = [ '20130412142205843-196', '20130415093804724-403', '20130415100158230-407' ]; + var searchCriteria = createSearchCriteriaForCodes(dataSetCodes); + + facade.searchForDataSets(searchCriteria, function(response){ + assertObjectsCount(response.result, 3); + assertObjectsWithCodes(response.result, dataSetCodes); + assertObjectsWithProperties(response.result); + facade.close(); + }); + }); +}); + +test("searchForDataSetsOnBehalfOfUser()", function(){ + createFacadeAndLogin(function(facade){ + + var dataSetCodes = [ '20130412142205843-196', '20130415093804724-403', '20130415100158230-407' ]; + var searchCriteria = createSearchCriteriaForCodes(dataSetCodes); + var userId = 'test_space_admin'; + + facade.searchForDataSetsOnBehalfOfUser(searchCriteria, userId, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, [ '20130415093804724-403', '20130415100158230-407' ]); + assertObjectsWithProperties(response.result); + facade.close(); + }); + }); +}); + +test("filterDataSetsVisibleToUser()", function(){ + createFacadeAndLogin(function(facade){ + + var dataSetCodes = [ '20130412142205843-196', '20130415093804724-403', '20130415100158230-407' ]; + var searchCriteria = createSearchCriteriaForCodes(dataSetCodes); + + facade.searchForDataSets(searchCriteria, function(response){ + var dataSets = response.result; + var userId = "test_space_admin"; + + facade.filterDataSetsVisibleToUser(dataSets, userId, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, [ '20130415093804724-403', '20130415100158230-407' ]); + assertObjectsWithProperties(response.result); + facade.close(); + }); + }); + }); +}); + +test("listExperimentsForIdentifiers()", function(){ + createFacadeAndLogin(function(facade){ + var experimentIdentifiers = [ "/PLATONIC/SCREENING-EXAMPLES/EXP-1", "/TEST/TEST-PROJECT/TEST-EXPERIMENT" ]; + + facade.listExperimentsForIdentifiers(experimentIdentifiers, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithValues(response.result, 'identifier', experimentIdentifiers); + facade.close(); + }); + }); +}); + +test("searchForExperiments()", function(){ + createFacadeAndLogin(function(facade){ + var experimentCodes = [ 'EXP-1' ]; + var searchCriteria = createSearchCriteriaForCodes(experimentCodes); + + facade.searchForExperiments(searchCriteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, 'identifier', [ "/PLATONIC/SCREENING-EXAMPLES/EXP-1" ]); + facade.close(); + }); + }); +}); + +test("listProjects()", function(){ + createFacadeAndLogin(function(facade){ + facade.listProjects(function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, [ "SCREENING-EXAMPLES", "TEST-PROJECT" ]); + facade.close(); + }); + }); +}); + +test("listProjectsOnBehalfOfUser()", function(){ + createFacadeAndLogin(function(facade){ + var userId = "test_space_admin"; + + facade.listProjectsOnBehalfOfUser(userId, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, [ "TEST-PROJECT" ]); + facade.close(); + }); + }); +}); + +test("getMaterialByCodes()", function(){ + createFacadeAndLogin(function(facade){ + var materialIdentifiers = [ createMaterialIdentifier("/GENE/G1") ]; + + facade.getMaterialByCodes(materialIdentifiers, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, 'materialCode', [ "G1" ]); + facade.close(); + }); + }); +}); + +test("searchForMaterials()", function(){ + createFacadeAndLogin(function(facade){ + var materialCodes = [ "G1" ]; + var searchCriteria = createSearchCriteriaForCodes(materialCodes); + + facade.searchForMaterials(searchCriteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, 'materialCode', [ "G1" ]); + facade.close(); + }); + }); +}); + +test("createMetaproject(), listMetaprojects()", function(){ + createFacadeAndLogin(function(facade){ + createNewMetaproject(facade, "/" + testUserId + "/JS_TEST_METAPROJECT", function(response){ + facade.listMetaprojects(function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, 'name', ['JS_TEST_METAPROJECT']); + facade.close(); + }); + }); + }); +}); + +test("createMetaproject(), listMetaprojectsOnBehalfOfUser()", function(){ + var powerUserId = "test_space_admin"; + var powerUserPassword = "password"; + + createFacadeAndLoginForUserAndPassword(powerUserId, powerUserPassword, function(facadePowerUser){ + var powerUserMetaprojectIdentifier = "/" + powerUserId + "/JS_TEST_METAPROJECT_POWER_USER" + createNewMetaproject(facadePowerUser, powerUserMetaprojectIdentifier, function(response){ + + createFacadeAndLoginForUserAndPassword(testUserId, testUserPassword, function(facadeTestUser){ + var testUserMetaprojectIdentifier = "/" + testUserId + "/JS_TEST_METAPROJECT"; + createNewMetaproject(facadeTestUser, testUserMetaprojectIdentifier, function(response){ + + facadeTestUser.listMetaprojectsOnBehalfOfUser(powerUserId, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, 'name', ['JS_TEST_METAPROJECT_POWER_USER']); + facadePowerUser.close(); + facadeTestUser.close(); + }); + }); + }, testUrl); + }) + }, testUrl); +}); + +test("createMetaproject(), getMetaproject()", function(){ + createFacadeAndLogin(function(facade){ + var metaprojectIdentifier = "/" + testUserId + "/JS_TEST_METAPROJECT"; + + createNewMetaproject(facade, metaprojectIdentifier, function(response){ + var metaprojectId = createMetaprojectIdentifierId(metaprojectIdentifier); + + facade.getMetaproject(metaprojectId, function(response){ + equal(response.result.metaproject.identifier, metaprojectIdentifier, 'Metaproject identifier is correct'); + facade.close(); + }); + }); + }); +}); + +test("createMetaproject(), getMetaprojectOnBehalfOfUser()", function(){ + var powerUserId = "test_space_admin"; + var powerUserPassword = "password"; + + createFacadeAndLoginForUserAndPassword(powerUserId, powerUserPassword, function(facadePowerUser){ + var powerUserMetaprojectIdentifier = "/" + powerUserId + "/JS_TEST_METAPROJECT_POWER_USER"; + var powerUserMetaprojectId = createMetaprojectIdentifierId(powerUserMetaprojectIdentifier); + createNewMetaproject(facadePowerUser, powerUserMetaprojectIdentifier, function(response){ + + createFacadeAndLoginForUserAndPassword(testUserId, testUserPassword, function(facadeTestUser){ + var testUserMetaprojectIdentifier = "/" + testUserId + "/JS_TEST_METAPROJECT"; + createNewMetaproject(facadeTestUser, testUserMetaprojectIdentifier, function(response){ + + facadeTestUser.getMetaprojectOnBehalfOfUser(powerUserMetaprojectId, powerUserId, function(response){ + equal(response.result.metaproject.identifier, powerUserMetaprojectIdentifier, 'Metaproject identifier is correct'); + facadePowerUser.close(); + facadeTestUser.close(); + }); + }); + }, testUrl); + }) + }, testUrl); +}); + +test("createMetaproject(), updateMetaproject()", function(){ + createFacadeAndLogin(function(facade){ + var metaprojectIdentifier = "/" + testUserId + "/JS_TEST_METAPROJECT"; + + createNewMetaproject(facade, metaprojectIdentifier, function(response){ + var metaproject = response.result; + var metaprojectId = createMetaprojectIdentifierId(metaprojectIdentifier); + var description = generateRandomString(); + + ok(!metaproject.description, "Metaproject description was empty"); + + facade.updateMetaproject(metaprojectId, metaproject.name, description, function(response){ + facade.getMetaproject(metaprojectId, function(response){ + equal(response.result.metaproject.description, description, "Metaproject description properly updated"); + facade.close(); + }); + }) + }); + }); +}); + +test("createMetaproject(), deleteMetaproject()", function(){ + createFacadeAndLogin(function(facade){ + var metaprojectIdentifier = "/" + testUserId + "/JS_TEST_METAPROJECT"; + + createNewMetaproject(facade, metaprojectIdentifier, function(response){ + var metaprojectId = createMetaprojectIdentifierId(metaprojectIdentifier); + + facade.deleteMetaproject(metaprojectId, function(response){ + facade.listMetaprojects(function(response){ + ok(!findMetaproject(response.result, metaprojectIdentifier), "Metaproject has been deleted"); + facade.close(); + }); + }) + }); + }); +}); + +test("createMetaproject(), addToMetaproject(), removeFromMetaproject()", function(){ + createFacadeAndLogin(function(facade){ + var metaprojectIdentifier = "/" + testUserId + "/JS_TEST_METAPROJECT"; + + createNewMetaproject(facade, metaprojectIdentifier, function(response){ + var metaprojectId = createMetaprojectIdentifierId(metaprojectIdentifier); + + facade.getMetaproject(metaprojectId, function(response){ + var assignments = response.result; + assertObjectsCount(response.result.samples, 0); + + var assignmentsIds = { + "@type" : "MetaprojectAssignmentsIds", + "samples" : [ createSampleIdentifierId("/PLATONIC/PLATE-1") ] + }; + + facade.addToMetaproject(metaprojectId, assignmentsIds, function(response){ + facade.getMetaproject(metaprojectId, function(response){ + var assignments = response.result; + assertObjectsCount(assignments.samples, 1); + assertObjectsWithCodes(assignments.samples, ['PLATE-1']); + + facade.removeFromMetaproject(metaprojectId, assignmentsIds, function(response){ + facade.getMetaproject(metaprojectId, function(response){ + var assignments = response.result; + assertObjectsCount(assignments.samples, 0); + facade.close(); + }); + }); + }); + }); + }); + }); + }); +}); + + + +test("listAttachmentsForProject()", function(){ + createFacadeAndLogin(function(facade){ + var projectId = createProjectIdentifierId("/TEST/TEST-PROJECT"); + + facade.listAttachmentsForProject(projectId, false, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, 'fileName', ['projectAttachment']); + facade.close(); + }); + }); +}); + +test("listAttachmentsForExperiment()", function(){ + createFacadeAndLogin(function(facade){ + var experimentId = createExperimentIdentifierId("/TEST/TEST-PROJECT/TEST-EXPERIMENT"); + + facade.listAttachmentsForExperiment(experimentId, false, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "fileName", ["experimentAttachment"]); + facade.close(); + }); + }); +}); + +test("listAttachmentsForSample()", function(){ + createFacadeAndLogin(function(facade){ + var sampleId = createSampleIdentifierId("/TEST/TEST-SAMPLE-2"); + + facade.listAttachmentsForSample(sampleId, false, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "fileName", ["sampleAttachment"]); + facade.close(); + }); + }); +}); + +test("updateSampleProperties(), searchForSamples()", function(){ + createFacadeAndLogin(function(facade){ + var sampleCodes = ['TEST-SAMPLE-2']; + var searchCriteria = createSearchCriteriaForCodes(sampleCodes); + + facade.searchForSamples(searchCriteria, function(response){ + var sample = response.result[0]; + var description = generateRandomString(); + var properties = { + "DESCRIPTION" : description + }; + + facade.updateSampleProperties(sample.id, properties, function(response){ + facade.searchForSamples(searchCriteria, function(response){ + var sample = response.result[0]; + equal(sample.properties["DESCRIPTION"], description, "Property value has been changed") + facade.close(); + }); + }); + }); + }); +}); + +test("addUnofficialVocabularyTerm(), listVocabularies()", function(){ + createFacadeAndLogin(function(facade){ + var vocabularyCode = "TEST-VOCABULARY"; + var termCode = generateRandomString(); + + facade.listVocabularies(function(response){ + var originalVocabulary = findVocabulary(response.result, vocabularyCode); + var originalTerm = findVocabularyTerm(originalVocabulary, termCode); + + ok(!originalTerm, 'Term did not exist'); + + var term = createNewVocabularyTerm(termCode, findVocabularyMaxOrdinal(originalVocabulary)); + + facade.addUnofficialVocabularyTerm(originalVocabulary.id, term, function(response){ + facade.listVocabularies(function(response){ + var updatedVocabulary = findVocabulary(response.result, vocabularyCode); + var updatedTerm = findVocabularyTerm(updatedVocabulary, termCode); + + ok(updatedTerm, 'Term has been added'); + equal(updatedTerm.code, termCode, 'Term has correct code'); + + facade.close(); + }); + }); + }); + }); +}); + +test("setWebAppSettings(), getWebAppSettings()", function(){ + createFacadeAndLogin(function(facade){ + var webAppId = generateRandomString(); + + facade.getWebAppSettings(webAppId, function(response){ + deepEqual(response.result.settings, {}, 'Web app settings are empty'); + + var settings = { + "param1" : "value1", + "param2" : "value2" + }; + var webAppSettings = createWebAppSettings(webAppId, settings); + + facade.setWebAppSettings(webAppSettings, function(response){ + facade.getWebAppSettings(webAppId, function(response){ + deepEqual(response.result.settings, settings, "Web app settings properly updated"); + facade.close(); + }); + }); + }); + }); +}); + +test("listQueries()", function(){ + createFacadeAndLogin(function(facade){ + facade.listQueries(function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithValues(response.result, "name", ["Test Query"]); + facade.close(); + }); + }); +}); + +test("executeQuery()", function(){ + createFacadeAndLogin(function(facade){ + facade.listQueries(function(response){ + var queryId = findQuery(response.result, "Test Query").id; + var parameterBindings = {}; + + facade.executeQuery(queryId, parameterBindings, function(response){ + ok(response.result, "Query has been executed"); + equal(response.result.columns[0].title , "test_column", "Returned column has correct title"); + equal(response.result.rows[0][0].value , "test_value", "Returned row has correct value"); + facade.close(); + }); + }); + }); +}); + +test("listTableReportDescriptions()", function(){ + createFacadeAndLogin(function(facade){ + facade.listTableReportDescriptions(function(response){ + assertObjectsCount(response.result, 2); + facade.close(); + }); + }); +}); + +test("createReportFromDataSets()", function(){ + createFacadeAndLogin(function(facade){ + var dataStoreCode = "DSS1"; + var serviceKey = "default-plate-image-analysis"; + var dataSetCodes = [ "20130412153659994-391" ]; + + facade.createReportFromDataSets(dataStoreCode, serviceKey, dataSetCodes, function(response){ + ok(response.result, "Report has been created"); + facade.close(); + }); + }); +}); + +test("listAggregationServices()", function(){ + createFacadeAndLogin(function(facade){ + facade.listAggregationServices(function(response){ + assertObjectsCount(response.result, 4); + facade.close(); + }); + }); +}); + +test("createReportFromAggregationService()", function(){ + createFacadeAndLogin(function(facade){ + var dataStoreCode = "DSS2"; + var serviceKey = "test-aggregation-service"; + var parameters = {}; + + facade.createReportFromAggregationService(dataStoreCode, serviceKey, parameters, function(response){ + ok(response.result, "Report has been created"); + facade.close(); + }); + }); +}); + +test("getSessionTokenFromServer()", function(){ + createFacadeAndLogin(function(facade){ + facade.getSessionTokenFromServer(function(response){ + ok(response.result, "Got session token"); + facade.close(); + }); + }); +}); + +test("listFilesForDataSetFile()", function(){ + createFacadeAndLogin(function(facade){ + var fileOrFolder = createDataSetFileDTO("20130412152036861-380", "/original/PLATE-1A", true); + + facade.listFilesForDataSetFile(fileOrFolder, function(response){ + assertObjectsCount(response.result, 864); + facade.close(); + }); + }); +}); + +test("getDownloadUrlForFileForDataSetFile()", function(){ + createFacadeAndLogin(function(facade){ + var fileOrFolder = createDataSetFileDTO("20130412152036861-380", "/original/PLATE-1A/bPLATE_wA10_s1_cRGB.png", false); + + facade.getDownloadUrlForFileForDataSetFile(fileOrFolder, function(response){ + ok(response.result, "Got download url"); + + downloadFile(response.result, function(data){ + ok(data, "Download url works"); + facade.close(); + }); + }); + }); +}); + +test("getDownloadUrlForFileForDataSetFileWithTimeout()", function(){ + createFacadeAndLogin(function(facade){ + var fileOrFolder = createDataSetFileDTO("20130412152036861-380", "/original/PLATE-1A/bPLATE_wA10_s1_cRGB.png", false); + var validityDurationInSeconds = 10; + + facade.getDownloadUrlForFileForDataSetFileWithTimeout(fileOrFolder, validityDurationInSeconds, function(response){ + ok(response.result, "Got download url"); + + downloadFile(response.result, function(data){ + ok(data, "Download url works once"); + + downloadFile(response.result, function(data){ + ok(!data, "Download url does not work anymore"); + facade.close(); + }); + }); + }); + }); +}); + +test("getDownloadUrlForFileForDataSetFileInSession()", function(){ + createFacadeAndLogin(function(facade){ + var fileOrFolder = createDataSetFileDTO("20130412152036861-380", "/original/PLATE-1A/bPLATE_wA10_s1_cRGB.png", false); + + facade.getDownloadUrlForFileForDataSetFileInSession(fileOrFolder, function(response){ + ok(response, "Got download url"); + + downloadFile(response, function(data){ + ok(!isHtml(data), "Download url works"); + + downloadFile(response, function(data){ + ok(!isHtml(data), "Download url works more than once"); + + facade.logout(function(){ + downloadFile(response, function(data){ + ok(isHtml(data), "Download url does not work after logout"); + facade.close(); + }); + }); + }); + }); + }); + }); +}); + +test("listFilesForDataSet()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = "20130412152036861-380"; + var path = "/original"; + var recursive = true; + + facade.listFilesForDataSet(dataSetCode, path, recursive, function(response){ + assertObjectsCount(response.result, 865); + facade.close(); + }); + }); +}); + +test("getDownloadUrlForFileForDataSet()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = "20130412152036861-380"; + var path = "/original/PLATE-1A/bPLATE_wA10_s1_cRGB.png"; + + facade.getDownloadUrlForFileForDataSet(dataSetCode, path, function(response){ + ok(response.result, "Got download url"); + + downloadFile(response.result, function(data){ + ok(data, "Download url works"); + facade.close(); + }); + }); + }); +}); + +test("getDownloadUrlForFileForDataSetInSession()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = "20130412152036861-380"; + var path = "/original/PLATE-1A/bPLATE_wA10_s1_cRGB.png"; + + facade.getDownloadUrlForFileForDataSetInSession(dataSetCode, path, function(response){ + ok(response, "Got download url"); + + downloadFile(response, function(data){ + ok(!isHtml(data), "Download url works"); + + downloadFile(response, function(data){ + ok(!isHtml(data), "Download url works more than once"); + + facade.logout(function(){ + downloadFile(response, function(data){ + ok(isHtml(data), "Download url does not work after logout"); + facade.close(); + }); + }); + }); + }); + }); + }); +}); + +test("getDownloadUrlForFileForDataSetWithTimeout()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = "20130412152036861-380"; + var path = "/original/PLATE-1A/bPLATE_wA10_s1_cRGB.png"; + var validityDurationInSeconds = 10; + + facade.getDownloadUrlForFileForDataSetWithTimeout(dataSetCode, path, validityDurationInSeconds, function(response){ + ok(response.result, "Got download url"); + + downloadFile(response.result, function(data){ + ok(data, "Download url works once"); + + downloadFile(response.result, function(data){ + ok(!data, "Download url does not work anymore"); + facade.close(); + }); + }); + }); + }); +}); + +test("createSessionWorkspaceDownloadUrl()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var fileContent = generateRandomString(); + var dataStoreCode = "DSS2"; + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCode, function(){ + try{ + facade.createSessionWorkspaceDownloadUrl(fileName, function(downloadUrl){ + downloadFile(downloadUrl, function(response){ + ok(false); + }); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); + }); +}); + +test("createSessionWorkspaceDownloadUrlForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var fileContent = generateRandomString(); + var dataStoreCode = "DSS2"; + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCode, function(){ + facade.createSessionWorkspaceDownloadUrlForDataStore(fileName, dataStoreCode, function(downloadUrl){ + downloadFile(downloadUrl, function(response){ + equal(response, fileContent, "Download url is correct"); + facade.close(); + }); + }); + }); + }); +}); + +test("createSessionWorkspaceDownloadLink()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var linkText = generateRandomString(); + var dataStoreCode = "DSS2"; + + facade.createSessionWorkspaceDownloadUrlForDataStore(fileName, dataStoreCode, function(downloadUrl){ + try{ + facade.createSessionWorkspaceDownloadLink(fileName, linkText, function(link){ + ok(false); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); + }); +}); + +test("createSessionWorkspaceDownloadLinkForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var linkText = generateRandomString(); + var dataStoreCode = "DSS2"; + + facade.createSessionWorkspaceDownloadUrlForDataStore(fileName, dataStoreCode, function(downloadUrl){ + facade.createSessionWorkspaceDownloadLinkForDataStore(fileName, linkText, dataStoreCode, function(link){ + equal($(link).attr("href"), downloadUrl, "Link has correct url"); + equal($(link).text(), linkText, "Link has correct text"); + facade.close(); + }); + }); + }); +}); + +test("downloadSessionWorkspaceFile()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var fileContent = generateRandomString(); + var dataStoreCode = "DSS2"; + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCode, function(){ + try{ + facade.downloadSessionWorkspaceFile(fileName, function(response){ + ok(false); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); + }); +}); + +test("downloadSessionWorkspaceFileForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var fileContent = generateRandomString(); + var dataStoreCode = "DSS2"; + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCode, function(){ + facade.downloadSessionWorkspaceFileForDataStore(fileName, dataStoreCode, function(response){ + equal(response, fileContent, "File has been downloaded"); + facade.close(); + }); + }); + }); +}); + +test("deleteSessionWorkspaceFile()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var fileContent = generateRandomString(); + var dataStoreCode = "DSS2"; + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCode, function(){ + try{ + facade.deleteSessionWorkspaceFile(fileName, function(){ + ok(false); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); + }); +}); + +test("deleteSessionWorkspaceFileForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var fileName = generateRandomString(); + var fileContent = generateRandomString(); + var dataStoreCode = "DSS2"; + + uploadFileToSessionWorkspace(facade, fileName, fileContent, dataStoreCode, function(){ + facade.deleteSessionWorkspaceFileForDataStore(fileName, dataStoreCode, function(){ + facade.downloadSessionWorkspaceFileForDataStore(fileName, dataStoreCode, function(response){ + ok(response.error.indexOf("No such file or directory"), "File has been deleted"); + facade.close(); + }); + }); + }); + }); +}); + +test("getPathToDataSet()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = "20130412152036861-380"; + var overrideStoreRootPathOrNull = ""; + + facade.getPathToDataSet(dataSetCode, overrideStoreRootPathOrNull, function(response){ + equal(response.result, "/1/1FD3FF61-1576-4908-AE3D-296E60B4CE06/7e/71/80/20130412152036861-380", "Data set path is correct"); + facade.close(); + }); + }); +}); + +test("listAllShares()", function(){ + createFacadeAndLogin(function(facade){ + try{ + facade.listAllShares(function(response){ + ok(false); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); +}); + +test("listAllSharesForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var dataStoreCode = "DSS2"; + + facade.listAllSharesForDataStore(dataStoreCode, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithValues(response.result, "shareId", ["1","2"]); + facade.close(); + }); + }); +}); + +test("shuffleDataSet()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetCode = "20130415100308111-409"; + var share1Id = "1"; + var share2Id = "2"; + var overrideStoreRootPathOrNull = ""; + var isInShare = function(dataSetPath, shareId){ + return dataSetPath.indexOf("/" + shareId + "/") == 0 + } + + facade.getPathToDataSet(dataSetCode, overrideStoreRootPathOrNull, function(response){ + var toShareId = null; + + if(isInShare(response.result, share1Id)){ + toShareId = share2Id; + }else{ + toShareId = share1Id; + } + + facade.shuffleDataSet(dataSetCode, toShareId, function(response){ + facade.getPathToDataSet(dataSetCode, overrideStoreRootPathOrNull, function(response){ + ok(isInShare(response.result, toShareId), "Data set has been moved to a different share"); + facade.close(); + }); + }); + }); + }); +}); + +test("getValidationScript()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetTypeOrNull = "HCS_IMAGE"; + + try{ + facade.getValidationScript(dataSetTypeOrNull, function(response){ + ok(false); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); +}); + +test("getValidationScriptForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetTypeOrNull = "HCS_IMAGE"; + var dataStoreCode = "DSS2"; + + facade.getValidationScriptForDataStore(dataSetTypeOrNull, dataStoreCode, function(response){ + ok(response.result, "Got a validation script"); + facade.close(); + }); + }); +}); + +test("getGraphUrl()", function(){ + createFacadeAndLogin(function(facade){ + var dataStoreCodeOrNull = "DSS2"; + + uploadGraphToSessionWorkspace(facade, dataStoreCodeOrNull, function(graphConfig){ + try{ + facade.getGraphUrl(graphConfig, function(graphUrl){ + ok(false); + }); + }catch(e){ + ok(e == "There is more than one data store configured. Please specify a data store code to get a data store url."); + facade.close(); + } + }); + }); +}); + +test("getGraphUrlForDataStore()", function(){ + createFacadeAndLogin(function(facade){ + var dataStoreCodeOrNull = "DSS2"; + + uploadGraphToSessionWorkspace(facade, dataStoreCodeOrNull, function(graphConfig){ + facade.getGraphUrlForDataStore(graphConfig, dataStoreCodeOrNull, function(graphUrl){ + downloadFile(graphUrl, function(data){ + ok(!isHtml(data), "Graph has been generated"); + facade.close(); + }) + }); + }); + }); +}); + +test("openbisWebAppContext()", function(){ + createFacadeAndLogin(function(facade){ + var context = new openbisWebAppContext(); + equal(context.getWebappCode(), "openbis-test", "Webapp code is correct"); + ok(!context.getEntityKind(), "Entity kind is correct"); + ok(!context.getEntityType(), "Entity type is correct"); + ok(!context.getEntityIdentifier(), "Entity identifier is correct"); + ok(!context.getEntityPermId(), "Entity perm id is correct"); + + facade.getSessionTokenFromServer(function(response){ + equal(context.getSessionId(), response.result, "Session token is correct"); + facade.close(); + }); + }); +}); + +test("SearchCriteriaMatchClause.createPropertyMatch()", function(){ + createFacadeAndLogin(function(facade){ + var clause = SearchCriteriaMatchClause.createPropertyMatch("$PLATE_GEOMETRY","96_WELLS_8X12"); + var criteria = new SearchCriteria(); + criteria.addMatchClause(clause); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 4); + assertObjectsWithCodes(response.result, ["PLATE-1", "PLATE-1A", "PLATE-2"]); + facade.close(); + }); + }); +}); + +test("SearchCriteriaMatchClause.createPropertyMatch()", function(){ + createFacadeAndLogin(function(facade){ + var clause = SearchCriteriaMatchClause.createPropertyMatch("$PLATE_GEOMETRY","96_WELLS_8X12"); + var criteria = new SearchCriteria(); + criteria.addMatchClause(clause); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 4); + assertObjectsWithCodes(response.result, ["PLATE-1", "PLATE-1A", "PLATE-2"]); + facade.close(); + }); + }); +}); + +test("SearchCriteriaMatchClause.createAttributeMatch()", function(){ + createFacadeAndLogin(function(facade){ + var clause = SearchCriteriaMatchClause.createAttributeMatch("CODE","PLATE-1"); + var criteria = new SearchCriteria(); + criteria.addMatchClause(clause); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["PLATE-1"]); + facade.close(); + }); + }); +}); + +test("SearchCriteriaMatchClause.createTimeAttributeMatch()", function(){ + createFacadeAndLogin(function(facade){ + var clause = SearchCriteriaMatchClause.createTimeAttributeMatch("REGISTRATION_DATE","EQUALS", "2013-04-17", "0"); + var criteria = new SearchCriteria(); + criteria.addMatchClause(clause); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["SERIES-1"]); + facade.close(); + }); + }); +}); + +test("SearchCriteriaMatchClause.createAnyPropertyMatch()", function(){ + createFacadeAndLogin(function(facade){ + var clause = SearchCriteriaMatchClause.createAnyPropertyMatch("96_WELLS_8X12"); + var criteria = new SearchCriteria(); + criteria.addMatchClause(clause); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 4); + assertObjectsWithCodes(response.result, ["PLATE-1", "PLATE-1A", "PLATE-2"]); + facade.close(); + }); + }); +}); + +test("SearchCriteriaMatchClause.createAnyFieldMatch()", function(){ + createFacadeAndLogin(function(facade){ + var clause = SearchCriteriaMatchClause.createAnyFieldMatch("PLATE-1"); + var criteria = new SearchCriteria(); + criteria.addMatchClause(clause); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["PLATE-1"]); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createSampleParentCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var parentCriteria = new SearchCriteria(); + parentCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","TEST-SAMPLE-2")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createSampleParentCriteria(parentCriteria)); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, ["TEST-SAMPLE-2-CHILD-1", "TEST-SAMPLE-2-CHILD-2"]); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createSampleChildCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var childCriteria = new SearchCriteria(); + childCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","TEST-SAMPLE-2-CHILD-1")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createSampleChildCriteria(childCriteria)); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["TEST-SAMPLE-2"]); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createSampleContainerCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var containerCriteria = new SearchCriteria(); + containerCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","TEST-SAMPLE-1")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(containerCriteria)); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 2); + assertObjectsWithCodes(response.result, ["TEST-SAMPLE-1:TEST-SAMPLE-1-CONTAINED-1", "TEST-SAMPLE-1:TEST-SAMPLE-1-CONTAINED-2"]); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createSampleCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var sampleCriteria = new SearchCriteria(); + sampleCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","PLATE-1")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createSampleCriteria(sampleCriteria)); + + facade.searchForDataSets(criteria, function(response){ + assertObjectsCount(response.result, 8); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createExperimentCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var sampleCriteria = new SearchCriteria(); + sampleCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","EXP-2")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createExperimentCriteria(sampleCriteria)); + + facade.searchForSamples(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["SERIES-1"]); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createDataSetContainerCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetContainerCriteria = new SearchCriteria(); + dataSetContainerCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","20130412143121081-200")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createDataSetContainerCriteria(dataSetContainerCriteria)); + + facade.searchForDataSets(criteria, function(response){ + assertObjectsCount(response.result, 4); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createDataSetParentCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetParentCriteria = new SearchCriteria(); + dataSetParentCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","20130412143121081-200")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createDataSetParentCriteria(dataSetParentCriteria)); + + facade.searchForDataSets(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["20130412153119864-385"]); + facade.close(); + }); + }); +}); + +test("SearchSubCriteria.createDataSetChildCriteria()", function(){ + createFacadeAndLogin(function(facade){ + var dataSetChildCriteria = new SearchCriteria(); + dataSetChildCriteria.addMatchClause(SearchCriteriaMatchClause.createAttributeMatch("CODE","20130412153119864-385")); + + var criteria = new SearchCriteria(); + criteria.addSubCriteria(SearchSubCriteria.createDataSetChildCriteria(dataSetChildCriteria)); + + facade.searchForDataSets(criteria, function(response){ + assertObjectsCount(response.result, 1); + assertObjectsWithCodes(response.result, ["20130412143121081-200"]); + facade.close(); + }); + }); +}); + + diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/plugin.properties b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..89ce56c5536c739d9568636cbd5c57bc00a97a7d --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-test/plugin.properties @@ -0,0 +1,3 @@ +webapp-folder = html +openbisui-contexts = modules-menu +label = openbis-test.js diff --git a/js-test/servers/common/core-plugins/tests/1/dss/reporting-plugins/test-aggregation-service/plugin.properties b/js-test/servers/common/core-plugins/tests/1/dss/reporting-plugins/test-aggregation-service/plugin.properties new file mode 100644 index 0000000000000000000000000000000000000000..c9bbcba2c785cb5e46d73f1f974782b5f52c9d1a --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/dss/reporting-plugins/test-aggregation-service/plugin.properties @@ -0,0 +1,3 @@ +label = Test Aggregation Service +class = ch.systemsx.cisd.openbis.dss.screening.server.plugins.jython.ScreeningJythonAggregationService +script-path = script.py \ No newline at end of file diff --git a/js-test/servers/common/core-plugins/tests/1/dss/reporting-plugins/test-aggregation-service/script.py b/js-test/servers/common/core-plugins/tests/1/dss/reporting-plugins/test-aggregation-service/script.py new file mode 100644 index 0000000000000000000000000000000000000000..05d81b14d5bab23bad59affa8c1b13173b828cbd --- /dev/null +++ b/js-test/servers/common/core-plugins/tests/1/dss/reporting-plugins/test-aggregation-service/script.py @@ -0,0 +1,2 @@ +def aggregate(parameters, tableBuilder): + pass diff --git a/js-test/servers/common/datastore_server/.activity/create-flowcell-hiseq b/js-test/servers/common/datastore_server/.activity/create-flowcell-hiseq new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-feature-list b/js-test/servers/common/datastore_server/.activity/data-set-handler-feature-list new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-microscope b/js-test/servers/common/datastore_server/.activity/data-set-handler-microscope new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-plate b/js-test/servers/common/datastore_server/.activity/data-set-handler-plate new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-features b/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-features new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-overlays b/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-overlays new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-series b/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-series new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-splitted b/js-test/servers/common/datastore_server/.activity/data-set-handler-plate-splitted new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/data-set-handler-simple b/js-test/servers/common/datastore_server/.activity/data-set-handler-simple new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/default-dropbox b/js-test/servers/common/datastore_server/.activity/default-dropbox new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/hcs-dropbox b/js-test/servers/common/datastore_server/.activity/hcs-dropbox new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/ms-injection b/js-test/servers/common/datastore_server/.activity/ms-injection new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/ms-search b/js-test/servers/common/datastore_server/.activity/ms-search new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/read-rta-timestamp b/js-test/servers/common/datastore_server/.activity/read-rta-timestamp new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/register-basecall-stats b/js-test/servers/common/datastore_server/.activity/register-basecall-stats new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/register-flowcell b/js-test/servers/common/datastore_server/.activity/register-flowcell new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/register-lane-hiseq b/js-test/servers/common/datastore_server/.activity/register-lane-hiseq new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/register-runstatistics b/js-test/servers/common/datastore_server/.activity/register-runstatistics new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/register-unaligned b/js-test/servers/common/datastore_server/.activity/register-unaligned new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.activity/simple-dropbox b/js-test/servers/common/datastore_server/.activity/simple-dropbox new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/.shredder b/js-test/servers/common/datastore_server/.shredder new file mode 100644 index 0000000000000000000000000000000000000000..2e08dce276e43c677d121d627a250d1710fed824 Binary files /dev/null and b/js-test/servers/common/datastore_server/.shredder differ diff --git a/js-test/servers/common/datastore_server/.updater b/js-test/servers/common/datastore_server/.updater new file mode 100644 index 0000000000000000000000000000000000000000..2e08dce276e43c677d121d627a250d1710fed824 Binary files /dev/null and b/js-test/servers/common/datastore_server/.updater differ diff --git a/js-test/servers/common/datastore_server/data/create-flowcell-hiseq/.gitignore b/js-test/servers/common/datastore_server/data/create-flowcell-hiseq/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/data/dropboxes/simple-dropbox.py b/js-test/servers/common/datastore_server/data/dropboxes/simple-dropbox.py new file mode 100644 index 0000000000000000000000000000000000000000..ee1cb2255596d4f605dafd572ec4b6921dc51b13 --- /dev/null +++ b/js-test/servers/common/datastore_server/data/dropboxes/simple-dropbox.py @@ -0,0 +1,15 @@ +#! /usr/bin/env python +transaction = service.transaction() + +expid = "/TEST/TEST-PROJECT/DEMO-EXP-SIMPLE" +exp = transaction.getExperiment(expid) + +if None == exp: + exp = transaction.createNewExperiment(expid, "SIRNA_HCS") + exp.setPropertyValue("DESCRIPTION", "Description of the demo experiment") + +dataSet = transaction.createNewDataSet() + 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0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/data/store/1/staging/.gitignore b/js-test/servers/common/datastore_server/data/store/1/staging/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/data/store/1/unidentified/.gitignore b/js-test/servers/common/datastore_server/data/store/1/unidentified/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/data/store/commandQueue b/js-test/servers/common/datastore_server/data/store/commandQueue new file mode 100644 index 0000000000000000000000000000000000000000..2e08dce276e43c677d121d627a250d1710fed824 Binary files /dev/null and b/js-test/servers/common/datastore_server/data/store/commandQueue differ diff --git a/js-test/servers/common/datastore_server/data/store/deleteDatasetsAlreadyDeletedFromApplicationServerTaskLastSeen b/js-test/servers/common/datastore_server/data/store/deleteDatasetsAlreadyDeletedFromApplicationServerTaskLastSeen new file mode 100644 index 0000000000000000000000000000000000000000..83981c0e3aabbb291048f2d619c53f3bb686f5c7 --- /dev/null +++ b/js-test/servers/common/datastore_server/data/store/deleteDatasetsAlreadyDeletedFromApplicationServerTaskLastSeen @@ -0,0 +1 @@ +175 \ No newline at end of file diff --git a/js-test/servers/common/datastore_server/db/imaging_test_js_common.sql b/js-test/servers/common/datastore_server/db/imaging_test_js_common.sql new file mode 100644 index 0000000000000000000000000000000000000000..5a5a99ec5d1d7cfe2de757d6b83e8685df0b058d --- /dev/null +++ b/js-test/servers/common/datastore_server/db/imaging_test_js_common.sql @@ -0,0 +1,21742 @@ +-- +-- PostgreSQL database dump +-- + +SET statement_timeout = 0; +SET client_encoding = 'UTF8'; +SET standard_conforming_strings = on; +SET check_function_bodies = false; +SET client_min_messages = warning; + +-- +-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: - +-- + +CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog; + + +-- +-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: - +-- + +COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language'; + + +SET search_path = public, pg_catalog; + +-- +-- Name: boolean_char; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN boolean_char AS boolean DEFAULT false; + + +-- +-- Name: channel_color; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN channel_color AS character varying(20) + CONSTRAINT channel_color_check CHECK (((VALUE)::text = ANY (ARRAY[('BLUE'::character varying)::text, ('GREEN'::character varying)::text, ('RED'::character varying)::text, ('RED_GREEN'::character varying)::text, ('RED_BLUE'::character varying)::text, ('GREEN_BLUE'::character varying)::text]))); + + +-- +-- Name: code; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN code AS character varying(40); + + +-- +-- Name: color_component; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN color_component AS character varying(40) + CONSTRAINT color_component_check CHECK (((VALUE)::text = ANY (ARRAY[('RED'::character varying)::text, ('GREEN'::character varying)::text, ('BLUE'::character varying)::text]))); + + +-- +-- Name: description; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN description AS character varying(200); + + +-- +-- Name: file_path; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN file_path AS character varying(1000); + + +-- +-- Name: long_name; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN long_name AS text; + + +-- +-- Name: tech_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN tech_id AS bigint; + + +-- +-- Name: channel_stacks_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION channel_stacks_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_cont_id CODE; +BEGIN + + select cont_id into v_cont_id from image_data_sets where id = NEW.ds_id; + + -- Check that if there is no spot than there is no dataset container as well + if v_cont_id IS NULL then + if NEW.spot_id IS NOT NULL then + RAISE EXCEPTION 'Insert/Update of CHANNEL_STACKS failed, as the dataset container is not set, but spot is (spot id = %).',NEW.spot_id; + end if; + else + if NEW.spot_id IS NULL then + RAISE EXCEPTION 'Insert/Update of CHANNEL_STACKS failed, as the dataset container is set (id = %), but spot is not set.',v_cont_id; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: delete_empty_acquired_images(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION delete_empty_acquired_images() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + delete from acquired_images where id = OLD.id; + RETURN NEW; +END; +$$; + + +-- +-- Name: delete_unused_images(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION delete_unused_images() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + delete from images where id = OLD.img_id or id = OLD.thumbnail_id; + RETURN NEW; +END; +$$; + + +-- +-- Name: delete_unused_nulled_images(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION delete_unused_nulled_images() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + if NEW.img_id IS NULL then + if OLD.img_id IS NOT NULL then + delete from images where id = OLD.img_id; + end if; + end if; + if NEW.thumbnail_id IS NULL then + if OLD.thumbnail_id IS NOT NULL then + delete from images where id = OLD.thumbnail_id; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: image_transformations_default_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION image_transformations_default_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_is_default boolean; +BEGIN + if NEW.is_default = 'T' then + select is_default into v_is_default from IMAGE_TRANSFORMATIONS + where is_default = 'T' + and channel_id = NEW.channel_id + and id != NEW.id; + if v_is_default is NOT NULL then + RAISE EXCEPTION 'Insert/Update of image transformation (Code: %) failed, as the new record has is_default set to true and there is already a default record defined.', NEW.code; + end if; + end if; + + RETURN NEW; +END; +$$; + + +SET default_tablespace = ''; + +SET default_with_oids = false; + +-- +-- Name: acquired_images; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE acquired_images ( + id bigint NOT NULL, + img_id tech_id, + thumbnail_id tech_id, + image_transformer_factory bytea, + channel_stack_id tech_id NOT NULL, + channel_id tech_id NOT NULL +); + + +-- +-- Name: acquired_images_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE acquired_images_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: acquired_images_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE acquired_images_id_seq OWNED BY acquired_images.id; + + +-- +-- Name: acquired_images_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('acquired_images_id_seq', 9684, true); + + +-- +-- Name: analysis_data_sets; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE analysis_data_sets ( + id bigint NOT NULL, + perm_id code NOT NULL, + cont_id tech_id +); + + +-- +-- Name: analysis_data_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE analysis_data_sets_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: analysis_data_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE analysis_data_sets_id_seq OWNED BY analysis_data_sets.id; + + +-- +-- Name: analysis_data_sets_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('analysis_data_sets_id_seq', 3, true); + + +-- +-- Name: channel_stacks; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE channel_stacks ( + id bigint NOT NULL, + x integer, + y integer, + z_in_m real, + t_in_sec real, + series_number integer, + is_representative boolean_char DEFAULT false NOT NULL, + ds_id tech_id NOT NULL, + spot_id tech_id +); + + +-- +-- Name: channel_stacks_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE channel_stacks_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: channel_stacks_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE channel_stacks_id_seq OWNED BY channel_stacks.id; + + +-- +-- Name: channel_stacks_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('channel_stacks_id_seq', 4500, true); + + +-- +-- Name: channels; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE channels ( + id bigint NOT NULL, + code long_name NOT NULL, + label long_name NOT NULL, + description description, + wavelength integer, + red_cc integer NOT NULL, + green_cc integer NOT NULL, + blue_cc integer NOT NULL, + ds_id tech_id, + exp_id tech_id, + CONSTRAINT channels_ds_exp_arc_ck CHECK ((((ds_id IS NOT NULL) AND (exp_id IS NULL)) OR ((ds_id IS NULL) AND (exp_id IS NOT NULL)))) +); + + +-- +-- Name: channels_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE channels_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: channels_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE channels_id_seq OWNED BY channels.id; + + +-- +-- Name: channels_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('channels_id_seq', 17, true); + + +-- +-- Name: containers; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE containers ( + id bigint NOT NULL, + perm_id code NOT NULL, + spots_width integer, + spots_height integer, + expe_id tech_id NOT NULL +); + + +-- +-- Name: containers_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE containers_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: containers_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE containers_id_seq OWNED BY containers.id; + + +-- +-- Name: containers_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('containers_id_seq', 2, true); + + +-- +-- Name: database_version_logs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE database_version_logs ( + db_version character varying(4) NOT NULL, + module_name character varying(250), + run_status character varying(10), + run_status_timestamp timestamp without time zone, + module_code bytea, + run_exception bytea +); + + +-- +-- Name: events; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE events ( + last_seen_deletion_event_id tech_id NOT NULL +); + + +-- +-- Name: experiments; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiments ( + id bigint NOT NULL, + perm_id code NOT NULL, + image_transformer_factory bytea +); + + +-- +-- Name: experiments_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiments_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiments_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE experiments_id_seq OWNED BY experiments.id; + + +-- +-- Name: experiments_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiments_id_seq', 2, true); + + +-- +-- Name: feature_defs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE feature_defs ( + id bigint NOT NULL, + code long_name NOT NULL, + label long_name NOT NULL, + description description, + ds_id tech_id NOT NULL +); + + +-- +-- Name: feature_defs_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE feature_defs_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: feature_defs_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE feature_defs_id_seq OWNED BY feature_defs.id; + + +-- +-- Name: feature_defs_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('feature_defs_id_seq', 12, true); + + +-- +-- Name: feature_values; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE feature_values ( + id bigint NOT NULL, + z_in_m real, + t_in_sec real, + "values" bytea NOT NULL, + fd_id tech_id NOT NULL +); + + +-- +-- Name: feature_values_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE feature_values_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: feature_values_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE feature_values_id_seq OWNED BY feature_values.id; + + +-- +-- Name: feature_values_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('feature_values_id_seq', 12, true); + + +-- +-- Name: feature_vocabulary_terms; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE feature_vocabulary_terms ( + id bigint NOT NULL, + code long_name NOT NULL, + sequence_number integer NOT NULL, + fd_id tech_id NOT NULL +); + + +-- +-- Name: feature_vocabulary_terms_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE feature_vocabulary_terms_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: feature_vocabulary_terms_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE feature_vocabulary_terms_id_seq OWNED BY feature_vocabulary_terms.id; + + +-- +-- Name: feature_vocabulary_terms_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('feature_vocabulary_terms_id_seq', 6, true); + + +-- +-- Name: image_data_sets; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_data_sets ( + id bigint NOT NULL, + perm_id code NOT NULL, + fields_width integer, + fields_height integer, + image_transformer_factory bytea, + is_multidimensional boolean_char NOT NULL, + image_library_name long_name, + image_library_reader_name long_name, + cont_id tech_id +); + + +-- +-- Name: image_data_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_data_sets_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_data_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_data_sets_id_seq OWNED BY image_data_sets.id; + + +-- +-- Name: image_data_sets_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_data_sets_id_seq', 11, true); + + +-- +-- Name: image_transformations; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_transformations ( + id bigint NOT NULL, + code long_name NOT NULL, + label long_name NOT NULL, + description character varying(1000), + image_transformer_factory bytea NOT NULL, + is_editable boolean_char NOT NULL, + is_default boolean_char DEFAULT false NOT NULL, + channel_id tech_id NOT NULL +); + + +-- +-- Name: image_transformations_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_transformations_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_transformations_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_transformations_id_seq OWNED BY image_transformations.id; + + +-- +-- Name: image_transformations_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_transformations_id_seq', 72, true); + + +-- +-- Name: image_zoom_level_transformations; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_zoom_level_transformations ( + id bigint NOT NULL, + zoom_level_id tech_id NOT NULL, + channel_id tech_id NOT NULL, + image_transformation_id tech_id NOT NULL +); + + +-- +-- Name: image_zoom_level_transformations_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_zoom_level_transformations_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_zoom_level_transformations_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_zoom_level_transformations_id_seq OWNED BY image_zoom_level_transformations.id; + + +-- +-- Name: image_zoom_level_transformations_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_zoom_level_transformations_id_seq', 15, true); + + +-- +-- Name: image_zoom_levels; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_zoom_levels ( + id bigint NOT NULL, + is_original boolean_char NOT NULL, + container_dataset_id tech_id NOT NULL, + physical_dataset_perm_id text NOT NULL, + path file_path, + width integer, + height integer, + color_depth integer, + file_type character varying(20) +); + + +-- +-- Name: image_zoom_levels_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_zoom_levels_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_zoom_levels_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_zoom_levels_id_seq OWNED BY image_zoom_levels.id; + + +-- +-- Name: image_zoom_levels_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_zoom_levels_id_seq', 21, true); + + +-- +-- Name: images; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE images ( + id bigint NOT NULL, + path file_path NOT NULL, + image_id code, + color color_component +); + + +-- +-- Name: images_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE images_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: images_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE images_id_seq OWNED BY images.id; + + +-- +-- Name: images_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('images_id_seq', 17550, true); + + +-- +-- Name: spots; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE spots ( + id bigint NOT NULL, + x integer, + y integer, + cont_id tech_id NOT NULL +); + + +-- +-- Name: spots_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE spots_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: spots_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE spots_id_seq OWNED BY spots.id; + + +-- +-- Name: spots_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('spots_id_seq', 288, true); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE acquired_images ALTER COLUMN id SET DEFAULT nextval('acquired_images_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE analysis_data_sets ALTER COLUMN id SET DEFAULT nextval('analysis_data_sets_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE channel_stacks ALTER COLUMN id SET DEFAULT nextval('channel_stacks_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE channels ALTER COLUMN id SET DEFAULT nextval('channels_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE containers ALTER COLUMN id SET DEFAULT nextval('containers_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE experiments ALTER COLUMN id SET DEFAULT nextval('experiments_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE feature_defs ALTER COLUMN id SET DEFAULT nextval('feature_defs_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE feature_values ALTER COLUMN id SET DEFAULT nextval('feature_values_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE feature_vocabulary_terms ALTER COLUMN id SET DEFAULT nextval('feature_vocabulary_terms_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_data_sets ALTER COLUMN id SET DEFAULT nextval('image_data_sets_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_transformations ALTER COLUMN id SET DEFAULT nextval('image_transformations_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_zoom_level_transformations ALTER COLUMN id SET DEFAULT nextval('image_zoom_level_transformations_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_zoom_levels ALTER COLUMN id SET DEFAULT nextval('image_zoom_levels_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE images ALTER COLUMN id SET DEFAULT nextval('images_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE spots ALTER COLUMN id SET DEFAULT nextval('spots_id_seq'::regclass); + + +-- +-- Data for Name: acquired_images; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY acquired_images (id, img_id, thumbnail_id, image_transformer_factory, channel_stack_id, channel_id) FROM stdin; +2593 5185 5186 \N 865 4 +2594 5187 5188 \N 865 5 +2595 5189 5190 \N 865 6 +2596 5191 5192 \N 866 4 +2597 5193 5194 \N 866 5 +2598 5195 5196 \N 866 6 +2599 5197 5198 \N 867 4 +2600 5199 5200 \N 867 5 +2601 5201 5202 \N 867 6 +2602 5203 5204 \N 868 4 +2603 5205 5206 \N 868 5 +2604 5207 5208 \N 868 6 +2605 5209 5210 \N 869 4 +2606 5211 5212 \N 869 5 +2607 5213 5214 \N 869 6 +2608 5215 5216 \N 870 4 +2609 5217 5218 \N 870 5 +2610 5219 5220 \N 870 6 +2611 5221 5222 \N 871 4 +2612 5223 5224 \N 871 5 +2613 5225 5226 \N 871 6 +2614 5227 5228 \N 872 4 +2615 5229 5230 \N 872 5 +2616 5231 5232 \N 872 6 +2617 5233 5234 \N 873 4 +2618 5235 5236 \N 873 5 +2619 5237 5238 \N 873 6 +2620 5239 5240 \N 874 4 +2621 5241 5242 \N 874 5 +2622 5243 5244 \N 874 6 +2623 5245 5246 \N 875 4 +2624 5247 5248 \N 875 5 +2625 5249 5250 \N 875 6 +2626 5251 5252 \N 876 4 +2627 5253 5254 \N 876 5 +2628 5255 5256 \N 876 6 +2629 5257 5258 \N 877 4 +2630 5259 5260 \N 877 5 +2631 5261 5262 \N 877 6 +2632 5263 5264 \N 878 4 +2633 5265 5266 \N 878 5 +2634 5267 5268 \N 878 6 +2635 5269 5270 \N 879 4 +2636 5271 5272 \N 879 5 +2637 5273 5274 \N 879 6 +2638 5275 5276 \N 880 4 +2639 5277 5278 \N 880 5 +2640 5279 5280 \N 880 6 +2641 5281 5282 \N 881 4 +2642 5283 5284 \N 881 5 +2643 5285 5286 \N 881 6 +2644 5287 5288 \N 882 4 +2645 5289 5290 \N 882 5 +2646 5291 5292 \N 882 6 +2647 5293 5294 \N 883 4 +2648 5295 5296 \N 883 5 +2649 5297 5298 \N 883 6 +2650 5299 5300 \N 884 4 +2651 5301 5302 \N 884 5 +2652 5303 5304 \N 884 6 +2653 5305 5306 \N 885 4 +2654 5307 5308 \N 885 5 +2655 5309 5310 \N 885 6 +2656 5311 5312 \N 886 4 +2657 5313 5314 \N 886 5 +2658 5315 5316 \N 886 6 +2659 5317 5318 \N 887 4 +2660 5319 5320 \N 887 5 +2661 5321 5322 \N 887 6 +2662 5323 5324 \N 888 4 +2663 5325 5326 \N 888 5 +2664 5327 5328 \N 888 6 +2665 5329 5330 \N 889 4 +2666 5331 5332 \N 889 5 +2667 5333 5334 \N 889 6 +2668 5335 5336 \N 890 4 +2669 5337 5338 \N 890 5 +2670 5339 5340 \N 890 6 +2671 5341 5342 \N 891 4 +2672 5343 5344 \N 891 5 +2673 5345 5346 \N 891 6 +2674 5347 5348 \N 892 4 +2675 5349 5350 \N 892 5 +2676 5351 5352 \N 892 6 +2677 5353 5354 \N 893 4 +2678 5355 5356 \N 893 5 +2679 5357 5358 \N 893 6 +2680 5359 5360 \N 894 4 +2681 5361 5362 \N 894 5 +2682 5363 5364 \N 894 6 +2683 5365 5366 \N 895 4 +2684 5367 5368 \N 895 5 +2685 5369 5370 \N 895 6 +2686 5371 5372 \N 896 4 +2687 5373 5374 \N 896 5 +2688 5375 5376 \N 896 6 +2689 5377 5378 \N 897 4 +2690 5379 5380 \N 897 5 +2691 5381 5382 \N 897 6 +2692 5383 5384 \N 898 4 +2693 5385 5386 \N 898 5 +2694 5387 5388 \N 898 6 +2695 5389 5390 \N 899 4 +2696 5391 5392 \N 899 5 +2697 5393 5394 \N 899 6 +2698 5395 5396 \N 900 4 +2699 5397 5398 \N 900 5 +2700 5399 5400 \N 900 6 +2701 5401 5402 \N 901 4 +2702 5403 5404 \N 901 5 +2703 5405 5406 \N 901 6 +2704 5407 5408 \N 902 4 +2705 5409 5410 \N 902 5 +2706 5411 5412 \N 902 6 +2707 5413 5414 \N 903 4 +2708 5415 5416 \N 903 5 +2709 5417 5418 \N 903 6 +2710 5419 5420 \N 904 4 +2711 5421 5422 \N 904 5 +2712 5423 5424 \N 904 6 +2713 5425 5426 \N 905 4 +2714 5427 5428 \N 905 5 +2715 5429 5430 \N 905 6 +2716 5431 5432 \N 906 4 +2717 5433 5434 \N 906 5 +2718 5435 5436 \N 906 6 +2719 5437 5438 \N 907 4 +2720 5439 5440 \N 907 5 +2721 5441 5442 \N 907 6 +2722 5443 5444 \N 908 4 +2723 5445 5446 \N 908 5 +2724 5447 5448 \N 908 6 +2725 5449 5450 \N 909 4 +2726 5451 5452 \N 909 5 +2727 5453 5454 \N 909 6 +2728 5455 5456 \N 910 4 +2729 5457 5458 \N 910 5 +2730 5459 5460 \N 910 6 +2731 5461 5462 \N 911 4 +2732 5463 5464 \N 911 5 +2733 5465 5466 \N 911 6 +2734 5467 5468 \N 912 4 +2735 5469 5470 \N 912 5 +2736 5471 5472 \N 912 6 +2737 5473 5474 \N 913 4 +2738 5475 5476 \N 913 5 +2739 5477 5478 \N 913 6 +2740 5479 5480 \N 914 4 +2741 5481 5482 \N 914 5 +2742 5483 5484 \N 914 6 +2743 5485 5486 \N 915 4 +2744 5487 5488 \N 915 5 +2745 5489 5490 \N 915 6 +2746 5491 5492 \N 916 4 +2747 5493 5494 \N 916 5 +2748 5495 5496 \N 916 6 +2749 5497 5498 \N 917 4 +2750 5499 5500 \N 917 5 +2751 5501 5502 \N 917 6 +2752 5503 5504 \N 918 4 +2753 5505 5506 \N 918 5 +2754 5507 5508 \N 918 6 +2755 5509 5510 \N 919 4 +2756 5511 5512 \N 919 5 +2757 5513 5514 \N 919 6 +2758 5515 5516 \N 920 4 +2759 5517 5518 \N 920 5 +2760 5519 5520 \N 920 6 +2761 5521 5522 \N 921 4 +2762 5523 5524 \N 921 5 +2763 5525 5526 \N 921 6 +2764 5527 5528 \N 922 4 +2765 5529 5530 \N 922 5 +2766 5531 5532 \N 922 6 +2767 5533 5534 \N 923 4 +2768 5535 5536 \N 923 5 +2769 5537 5538 \N 923 6 +2770 5539 5540 \N 924 4 +2771 5541 5542 \N 924 5 +2772 5543 5544 \N 924 6 +2773 5545 5546 \N 925 4 +2774 5547 5548 \N 925 5 +2775 5549 5550 \N 925 6 +2776 5551 5552 \N 926 4 +2777 5553 5554 \N 926 5 +2778 5555 5556 \N 926 6 +2779 5557 5558 \N 927 4 +2780 5559 5560 \N 927 5 +2781 5561 5562 \N 927 6 +2782 5563 5564 \N 928 4 +2783 5565 5566 \N 928 5 +2784 5567 5568 \N 928 6 +2785 5569 5570 \N 929 4 +2786 5571 5572 \N 929 5 +2787 5573 5574 \N 929 6 +2788 5575 5576 \N 930 4 +2789 5577 5578 \N 930 5 +2790 5579 5580 \N 930 6 +2791 5581 5582 \N 931 4 +2792 5583 5584 \N 931 5 +2793 5585 5586 \N 931 6 +2794 5587 5588 \N 932 4 +2795 5589 5590 \N 932 5 +2796 5591 5592 \N 932 6 +2797 5593 5594 \N 933 4 +2798 5595 5596 \N 933 5 +2799 5597 5598 \N 933 6 +2800 5599 5600 \N 934 4 +2801 5601 5602 \N 934 5 +2802 5603 5604 \N 934 6 +2803 5605 5606 \N 935 4 +2804 5607 5608 \N 935 5 +2805 5609 5610 \N 935 6 +2806 5611 5612 \N 936 4 +2807 5613 5614 \N 936 5 +2808 5615 5616 \N 936 6 +2809 5617 5618 \N 937 4 +2810 5619 5620 \N 937 5 +2811 5621 5622 \N 937 6 +2812 5623 5624 \N 938 4 +2813 5625 5626 \N 938 5 +2814 5627 5628 \N 938 6 +2815 5629 5630 \N 939 4 +2816 5631 5632 \N 939 5 +2817 5633 5634 \N 939 6 +2818 5635 5636 \N 940 4 +2819 5637 5638 \N 940 5 +2820 5639 5640 \N 940 6 +2821 5641 5642 \N 941 4 +2822 5643 5644 \N 941 5 +2823 5645 5646 \N 941 6 +2824 5647 5648 \N 942 4 +2825 5649 5650 \N 942 5 +2826 5651 5652 \N 942 6 +2827 5653 5654 \N 943 4 +2828 5655 5656 \N 943 5 +2829 5657 5658 \N 943 6 +2830 5659 5660 \N 944 4 +2831 5661 5662 \N 944 5 +2832 5663 5664 \N 944 6 +2833 5665 5666 \N 945 4 +2834 5667 5668 \N 945 5 +2835 5669 5670 \N 945 6 +2836 5671 5672 \N 946 4 +2837 5673 5674 \N 946 5 +2838 5675 5676 \N 946 6 +2839 5677 5678 \N 947 4 +2840 5679 5680 \N 947 5 +2841 5681 5682 \N 947 6 +2842 5683 5684 \N 948 4 +2843 5685 5686 \N 948 5 +2844 5687 5688 \N 948 6 +2845 5689 5690 \N 949 4 +2846 5691 5692 \N 949 5 +2847 5693 5694 \N 949 6 +2848 5695 5696 \N 950 4 +2849 5697 5698 \N 950 5 +2850 5699 5700 \N 950 6 +2851 5701 5702 \N 951 4 +2852 5703 5704 \N 951 5 +2853 5705 5706 \N 951 6 +2854 5707 5708 \N 952 4 +2855 5709 5710 \N 952 5 +2856 5711 5712 \N 952 6 +2857 5713 5714 \N 953 4 +2858 5715 5716 \N 953 5 +2859 5717 5718 \N 953 6 +2860 5719 5720 \N 954 4 +2861 5721 5722 \N 954 5 +2862 5723 5724 \N 954 6 +2863 5725 5726 \N 955 4 +2864 5727 5728 \N 955 5 +2865 5729 5730 \N 955 6 +2866 5731 5732 \N 956 4 +2867 5733 5734 \N 956 5 +2868 5735 5736 \N 956 6 +2869 5737 5738 \N 957 4 +2870 5739 5740 \N 957 5 +2871 5741 5742 \N 957 6 +2872 5743 5744 \N 958 4 +2873 5745 5746 \N 958 5 +2874 5747 5748 \N 958 6 +2875 5749 5750 \N 959 4 +2876 5751 5752 \N 959 5 +2877 5753 5754 \N 959 6 +2878 5755 5756 \N 960 4 +2879 5757 5758 \N 960 5 +2880 5759 5760 \N 960 6 +2881 5761 5762 \N 961 4 +2882 5763 5764 \N 961 5 +2883 5765 5766 \N 961 6 +2884 5767 5768 \N 962 4 +2885 5769 5770 \N 962 5 +2886 5771 5772 \N 962 6 +2887 5773 5774 \N 963 4 +2888 5775 5776 \N 963 5 +2889 5777 5778 \N 963 6 +2890 5779 5780 \N 964 4 +2891 5781 5782 \N 964 5 +2892 5783 5784 \N 964 6 +2893 5785 5786 \N 965 4 +2894 5787 5788 \N 965 5 +2895 5789 5790 \N 965 6 +2896 5791 5792 \N 966 4 +2897 5793 5794 \N 966 5 +2898 5795 5796 \N 966 6 +2899 5797 5798 \N 967 4 +2900 5799 5800 \N 967 5 +2901 5801 5802 \N 967 6 +2902 5803 5804 \N 968 4 +2903 5805 5806 \N 968 5 +2904 5807 5808 \N 968 6 +2905 5809 5810 \N 969 4 +2906 5811 5812 \N 969 5 +2907 5813 5814 \N 969 6 +2908 5815 5816 \N 970 4 +2909 5817 5818 \N 970 5 +2910 5819 5820 \N 970 6 +2911 5821 5822 \N 971 4 +2912 5823 5824 \N 971 5 +2913 5825 5826 \N 971 6 +2914 5827 5828 \N 972 4 +2915 5829 5830 \N 972 5 +2916 5831 5832 \N 972 6 +2917 5833 5834 \N 973 4 +2918 5835 5836 \N 973 5 +2919 5837 5838 \N 973 6 +2920 5839 5840 \N 974 4 +2921 5841 5842 \N 974 5 +2922 5843 5844 \N 974 6 +2923 5845 5846 \N 975 4 +2924 5847 5848 \N 975 5 +2925 5849 5850 \N 975 6 +2926 5851 5852 \N 976 4 +2927 5853 5854 \N 976 5 +2928 5855 5856 \N 976 6 +2929 5857 5858 \N 977 4 +2930 5859 5860 \N 977 5 +2931 5861 5862 \N 977 6 +2932 5863 5864 \N 978 4 +2933 5865 5866 \N 978 5 +2934 5867 5868 \N 978 6 +2935 5869 5870 \N 979 4 +2936 5871 5872 \N 979 5 +2937 5873 5874 \N 979 6 +2938 5875 5876 \N 980 4 +2939 5877 5878 \N 980 5 +2940 5879 5880 \N 980 6 +2941 5881 5882 \N 981 4 +2942 5883 5884 \N 981 5 +2943 5885 5886 \N 981 6 +2944 5887 5888 \N 982 4 +2945 5889 5890 \N 982 5 +2946 5891 5892 \N 982 6 +2947 5893 5894 \N 983 4 +2948 5895 5896 \N 983 5 +2949 5897 5898 \N 983 6 +2950 5899 5900 \N 984 4 +2951 5901 5902 \N 984 5 +2952 5903 5904 \N 984 6 +2953 5905 5906 \N 985 4 +2954 5907 5908 \N 985 5 +2955 5909 5910 \N 985 6 +2956 5911 5912 \N 986 4 +2957 5913 5914 \N 986 5 +2958 5915 5916 \N 986 6 +2959 5917 5918 \N 987 4 +2960 5919 5920 \N 987 5 +2961 5921 5922 \N 987 6 +2962 5923 5924 \N 988 4 +2963 5925 5926 \N 988 5 +2964 5927 5928 \N 988 6 +2965 5929 5930 \N 989 4 +2966 5931 5932 \N 989 5 +2967 5933 5934 \N 989 6 +2968 5935 5936 \N 990 4 +2969 5937 5938 \N 990 5 +2970 5939 5940 \N 990 6 +2971 5941 5942 \N 991 4 +2972 5943 5944 \N 991 5 +2973 5945 5946 \N 991 6 +2974 5947 5948 \N 992 4 +2975 5949 5950 \N 992 5 +2976 5951 5952 \N 992 6 +2977 5953 5954 \N 993 4 +2978 5955 5956 \N 993 5 +2979 5957 5958 \N 993 6 +2980 5959 5960 \N 994 4 +2981 5961 5962 \N 994 5 +2982 5963 5964 \N 994 6 +2983 5965 5966 \N 995 4 +2984 5967 5968 \N 995 5 +2985 5969 5970 \N 995 6 +2986 5971 5972 \N 996 4 +2987 5973 5974 \N 996 5 +2988 5975 5976 \N 996 6 +2989 5977 5978 \N 997 4 +2990 5979 5980 \N 997 5 +2991 5981 5982 \N 997 6 +2992 5983 5984 \N 998 4 +2993 5985 5986 \N 998 5 +2994 5987 5988 \N 998 6 +2995 5989 5990 \N 999 4 +2996 5991 5992 \N 999 5 +2997 5993 5994 \N 999 6 +2998 5995 5996 \N 1000 4 +2999 5997 5998 \N 1000 5 +3000 5999 6000 \N 1000 6 +3001 6001 6002 \N 1001 4 +3002 6003 6004 \N 1001 5 +3003 6005 6006 \N 1001 6 +3004 6007 6008 \N 1002 4 +3005 6009 6010 \N 1002 5 +3006 6011 6012 \N 1002 6 +3007 6013 6014 \N 1003 4 +3008 6015 6016 \N 1003 5 +3009 6017 6018 \N 1003 6 +3010 6019 6020 \N 1004 4 +3011 6021 6022 \N 1004 5 +3012 6023 6024 \N 1004 6 +3013 6025 6026 \N 1005 4 +3014 6027 6028 \N 1005 5 +3015 6029 6030 \N 1005 6 +3016 6031 6032 \N 1006 4 +3017 6033 6034 \N 1006 5 +3018 6035 6036 \N 1006 6 +3019 6037 6038 \N 1007 4 +3020 6039 6040 \N 1007 5 +3021 6041 6042 \N 1007 6 +3022 6043 6044 \N 1008 4 +3023 6045 6046 \N 1008 5 +3024 6047 6048 \N 1008 6 +3025 6049 6050 \N 1009 4 +3026 6051 6052 \N 1009 5 +3027 6053 6054 \N 1009 6 +3028 6055 6056 \N 1010 4 +3029 6057 6058 \N 1010 5 +3030 6059 6060 \N 1010 6 +3031 6061 6062 \N 1011 4 +3032 6063 6064 \N 1011 5 +3033 6065 6066 \N 1011 6 +3034 6067 6068 \N 1012 4 +3035 6069 6070 \N 1012 5 +3036 6071 6072 \N 1012 6 +3037 6073 6074 \N 1013 4 +3038 6075 6076 \N 1013 5 +3039 6077 6078 \N 1013 6 +3040 6079 6080 \N 1014 4 +3041 6081 6082 \N 1014 5 +3042 6083 6084 \N 1014 6 +3043 6085 6086 \N 1015 4 +3044 6087 6088 \N 1015 5 +3045 6089 6090 \N 1015 6 +3046 6091 6092 \N 1016 4 +3047 6093 6094 \N 1016 5 +3048 6095 6096 \N 1016 6 +3049 6097 6098 \N 1017 4 +3050 6099 6100 \N 1017 5 +3051 6101 6102 \N 1017 6 +3052 6103 6104 \N 1018 4 +3053 6105 6106 \N 1018 5 +3054 6107 6108 \N 1018 6 +3055 6109 6110 \N 1019 4 +3056 6111 6112 \N 1019 5 +3057 6113 6114 \N 1019 6 +3058 6115 6116 \N 1020 4 +3059 6117 6118 \N 1020 5 +3060 6119 6120 \N 1020 6 +3061 6121 6122 \N 1021 4 +3062 6123 6124 \N 1021 5 +3063 6125 6126 \N 1021 6 +3064 6127 6128 \N 1022 4 +3065 6129 6130 \N 1022 5 +3066 6131 6132 \N 1022 6 +3067 6133 6134 \N 1023 4 +3068 6135 6136 \N 1023 5 +3069 6137 6138 \N 1023 6 +3070 6139 6140 \N 1024 4 +3071 6141 6142 \N 1024 5 +3072 6143 6144 \N 1024 6 +3073 6145 6146 \N 1025 4 +3074 6147 6148 \N 1025 5 +3075 6149 6150 \N 1025 6 +3076 6151 6152 \N 1026 4 +3077 6153 6154 \N 1026 5 +3078 6155 6156 \N 1026 6 +3079 6157 6158 \N 1027 4 +3080 6159 6160 \N 1027 5 +3081 6161 6162 \N 1027 6 +3082 6163 6164 \N 1028 4 +3083 6165 6166 \N 1028 5 +3084 6167 6168 \N 1028 6 +3085 6169 6170 \N 1029 4 +3086 6171 6172 \N 1029 5 +3087 6173 6174 \N 1029 6 +3088 6175 6176 \N 1030 4 +3089 6177 6178 \N 1030 5 +3090 6179 6180 \N 1030 6 +3091 6181 6182 \N 1031 4 +3092 6183 6184 \N 1031 5 +3093 6185 6186 \N 1031 6 +3094 6187 6188 \N 1032 4 +3095 6189 6190 \N 1032 5 +3096 6191 6192 \N 1032 6 +3097 6193 6194 \N 1033 4 +3098 6195 6196 \N 1033 5 +3099 6197 6198 \N 1033 6 +3100 6199 6200 \N 1034 4 +3101 6201 6202 \N 1034 5 +3102 6203 6204 \N 1034 6 +3103 6205 6206 \N 1035 4 +3104 6207 6208 \N 1035 5 +3105 6209 6210 \N 1035 6 +3106 6211 6212 \N 1036 4 +3107 6213 6214 \N 1036 5 +3108 6215 6216 \N 1036 6 +3109 6217 6218 \N 1037 4 +3110 6219 6220 \N 1037 5 +3111 6221 6222 \N 1037 6 +3112 6223 6224 \N 1038 4 +3113 6225 6226 \N 1038 5 +3114 6227 6228 \N 1038 6 +3115 6229 6230 \N 1039 4 +3116 6231 6232 \N 1039 5 +3117 6233 6234 \N 1039 6 +3118 6235 6236 \N 1040 4 +3119 6237 6238 \N 1040 5 +3120 6239 6240 \N 1040 6 +3121 6241 6242 \N 1041 4 +3122 6243 6244 \N 1041 5 +3123 6245 6246 \N 1041 6 +3124 6247 6248 \N 1042 4 +3125 6249 6250 \N 1042 5 +3126 6251 6252 \N 1042 6 +3127 6253 6254 \N 1043 4 +3128 6255 6256 \N 1043 5 +3129 6257 6258 \N 1043 6 +3130 6259 6260 \N 1044 4 +3131 6261 6262 \N 1044 5 +3132 6263 6264 \N 1044 6 +3133 6265 6266 \N 1045 4 +3134 6267 6268 \N 1045 5 +3135 6269 6270 \N 1045 6 +3136 6271 6272 \N 1046 4 +3137 6273 6274 \N 1046 5 +3138 6275 6276 \N 1046 6 +3139 6277 6278 \N 1047 4 +3140 6279 6280 \N 1047 5 +3141 6281 6282 \N 1047 6 +3142 6283 6284 \N 1048 4 +3143 6285 6286 \N 1048 5 +3144 6287 6288 \N 1048 6 +3145 6289 6290 \N 1049 4 +3146 6291 6292 \N 1049 5 +3147 6293 6294 \N 1049 6 +3148 6295 6296 \N 1050 4 +3149 6297 6298 \N 1050 5 +3150 6299 6300 \N 1050 6 +3151 6301 6302 \N 1051 4 +3152 6303 6304 \N 1051 5 +3153 6305 6306 \N 1051 6 +3154 6307 6308 \N 1052 4 +3155 6309 6310 \N 1052 5 +3156 6311 6312 \N 1052 6 +3157 6313 6314 \N 1053 4 +3158 6315 6316 \N 1053 5 +3159 6317 6318 \N 1053 6 +3160 6319 6320 \N 1054 4 +3161 6321 6322 \N 1054 5 +3162 6323 6324 \N 1054 6 +3163 6325 6326 \N 1055 4 +3164 6327 6328 \N 1055 5 +3165 6329 6330 \N 1055 6 +3166 6331 6332 \N 1056 4 +3167 6333 6334 \N 1056 5 +3168 6335 6336 \N 1056 6 +3169 6337 6338 \N 1057 4 +3170 6339 6340 \N 1057 5 +3171 6341 6342 \N 1057 6 +3172 6343 6344 \N 1058 4 +3173 6345 6346 \N 1058 5 +3174 6347 6348 \N 1058 6 +3175 6349 6350 \N 1059 4 +3176 6351 6352 \N 1059 5 +3177 6353 6354 \N 1059 6 +3178 6355 6356 \N 1060 4 +3179 6357 6358 \N 1060 5 +3180 6359 6360 \N 1060 6 +3181 6361 6362 \N 1061 4 +3182 6363 6364 \N 1061 5 +3183 6365 6366 \N 1061 6 +3184 6367 6368 \N 1062 4 +3185 6369 6370 \N 1062 5 +3186 6371 6372 \N 1062 6 +3187 6373 6374 \N 1063 4 +3188 6375 6376 \N 1063 5 +3189 6377 6378 \N 1063 6 +3190 6379 6380 \N 1064 4 +3191 6381 6382 \N 1064 5 +3192 6383 6384 \N 1064 6 +3193 6385 6386 \N 1065 4 +3194 6387 6388 \N 1065 5 +3195 6389 6390 \N 1065 6 +3196 6391 6392 \N 1066 4 +3197 6393 6394 \N 1066 5 +3198 6395 6396 \N 1066 6 +3199 6397 6398 \N 1067 4 +3200 6399 6400 \N 1067 5 +3201 6401 6402 \N 1067 6 +3202 6403 6404 \N 1068 4 +3203 6405 6406 \N 1068 5 +3204 6407 6408 \N 1068 6 +3205 6409 6410 \N 1069 4 +3206 6411 6412 \N 1069 5 +3207 6413 6414 \N 1069 6 +3208 6415 6416 \N 1070 4 +3209 6417 6418 \N 1070 5 +3210 6419 6420 \N 1070 6 +3211 6421 6422 \N 1071 4 +3212 6423 6424 \N 1071 5 +3213 6425 6426 \N 1071 6 +3214 6427 6428 \N 1072 4 +3215 6429 6430 \N 1072 5 +3216 6431 6432 \N 1072 6 +3217 6433 6434 \N 1073 4 +3218 6435 6436 \N 1073 5 +3219 6437 6438 \N 1073 6 +3220 6439 6440 \N 1074 4 +3221 6441 6442 \N 1074 5 +3222 6443 6444 \N 1074 6 +3223 6445 6446 \N 1075 4 +3224 6447 6448 \N 1075 5 +3225 6449 6450 \N 1075 6 +3226 6451 6452 \N 1076 4 +3227 6453 6454 \N 1076 5 +3228 6455 6456 \N 1076 6 +3229 6457 6458 \N 1077 4 +3230 6459 6460 \N 1077 5 +3231 6461 6462 \N 1077 6 +3232 6463 6464 \N 1078 4 +3233 6465 6466 \N 1078 5 +3234 6467 6468 \N 1078 6 +3235 6469 6470 \N 1079 4 +3236 6471 6472 \N 1079 5 +3237 6473 6474 \N 1079 6 +3238 6475 6476 \N 1080 4 +3239 6477 6478 \N 1080 5 +3240 6479 6480 \N 1080 6 +3241 6481 6482 \N 1081 4 +3242 6483 6484 \N 1081 5 +3243 6485 6486 \N 1081 6 +3244 6487 6488 \N 1082 4 +3245 6489 6490 \N 1082 5 +3246 6491 6492 \N 1082 6 +3247 6493 6494 \N 1083 4 +3248 6495 6496 \N 1083 5 +3249 6497 6498 \N 1083 6 +3250 6499 6500 \N 1084 4 +3251 6501 6502 \N 1084 5 +3252 6503 6504 \N 1084 6 +3253 6505 6506 \N 1085 4 +3254 6507 6508 \N 1085 5 +3255 6509 6510 \N 1085 6 +3256 6511 6512 \N 1086 4 +3257 6513 6514 \N 1086 5 +3258 6515 6516 \N 1086 6 +3259 6517 6518 \N 1087 4 +3260 6519 6520 \N 1087 5 +3261 6521 6522 \N 1087 6 +3262 6523 6524 \N 1088 4 +3263 6525 6526 \N 1088 5 +3264 6527 6528 \N 1088 6 +3265 6529 6530 \N 1089 4 +3266 6531 6532 \N 1089 5 +3267 6533 6534 \N 1089 6 +3268 6535 6536 \N 1090 4 +3269 6537 6538 \N 1090 5 +3270 6539 6540 \N 1090 6 +3271 6541 6542 \N 1091 4 +3272 6543 6544 \N 1091 5 +3273 6545 6546 \N 1091 6 +3274 6547 6548 \N 1092 4 +3275 6549 6550 \N 1092 5 +3276 6551 6552 \N 1092 6 +3277 6553 6554 \N 1093 4 +3278 6555 6556 \N 1093 5 +3279 6557 6558 \N 1093 6 +3280 6559 6560 \N 1094 4 +3281 6561 6562 \N 1094 5 +3282 6563 6564 \N 1094 6 +3283 6565 6566 \N 1095 4 +3284 6567 6568 \N 1095 5 +3285 6569 6570 \N 1095 6 +3286 6571 6572 \N 1096 4 +3287 6573 6574 \N 1096 5 +3288 6575 6576 \N 1096 6 +3289 6577 6578 \N 1097 4 +3290 6579 6580 \N 1097 5 +3291 6581 6582 \N 1097 6 +3292 6583 6584 \N 1098 4 +3293 6585 6586 \N 1098 5 +3294 6587 6588 \N 1098 6 +3295 6589 6590 \N 1099 4 +3296 6591 6592 \N 1099 5 +3297 6593 6594 \N 1099 6 +3298 6595 6596 \N 1100 4 +3299 6597 6598 \N 1100 5 +3300 6599 6600 \N 1100 6 +3301 6601 6602 \N 1101 4 +3302 6603 6604 \N 1101 5 +3303 6605 6606 \N 1101 6 +3304 6607 6608 \N 1102 4 +3305 6609 6610 \N 1102 5 +3306 6611 6612 \N 1102 6 +3307 6613 6614 \N 1103 4 +3308 6615 6616 \N 1103 5 +3309 6617 6618 \N 1103 6 +3310 6619 6620 \N 1104 4 +3311 6621 6622 \N 1104 5 +3312 6623 6624 \N 1104 6 +3313 6625 6626 \N 1105 4 +3314 6627 6628 \N 1105 5 +3315 6629 6630 \N 1105 6 +3316 6631 6632 \N 1106 4 +3317 6633 6634 \N 1106 5 +3318 6635 6636 \N 1106 6 +3319 6637 6638 \N 1107 4 +3320 6639 6640 \N 1107 5 +3321 6641 6642 \N 1107 6 +3322 6643 6644 \N 1108 4 +3323 6645 6646 \N 1108 5 +3324 6647 6648 \N 1108 6 +3325 6649 6650 \N 1109 4 +3326 6651 6652 \N 1109 5 +3327 6653 6654 \N 1109 6 +3328 6655 6656 \N 1110 4 +3329 6657 6658 \N 1110 5 +3330 6659 6660 \N 1110 6 +3331 6661 6662 \N 1111 4 +3332 6663 6664 \N 1111 5 +3333 6665 6666 \N 1111 6 +3334 6667 6668 \N 1112 4 +3335 6669 6670 \N 1112 5 +3336 6671 6672 \N 1112 6 +3337 6673 6674 \N 1113 4 +3338 6675 6676 \N 1113 5 +3339 6677 6678 \N 1113 6 +3340 6679 6680 \N 1114 4 +3341 6681 6682 \N 1114 5 +3342 6683 6684 \N 1114 6 +3343 6685 6686 \N 1115 4 +3344 6687 6688 \N 1115 5 +3345 6689 6690 \N 1115 6 +3346 6691 6692 \N 1116 4 +3347 6693 6694 \N 1116 5 +3348 6695 6696 \N 1116 6 +3349 6697 6698 \N 1117 4 +3350 6699 6700 \N 1117 5 +3351 6701 6702 \N 1117 6 +3352 6703 6704 \N 1118 4 +3353 6705 6706 \N 1118 5 +3354 6707 6708 \N 1118 6 +3355 6709 6710 \N 1119 4 +3356 6711 6712 \N 1119 5 +3357 6713 6714 \N 1119 6 +3358 6715 6716 \N 1120 4 +3359 6717 6718 \N 1120 5 +3360 6719 6720 \N 1120 6 +3361 6721 6722 \N 1121 4 +3362 6723 6724 \N 1121 5 +3363 6725 6726 \N 1121 6 +3364 6727 6728 \N 1122 4 +3365 6729 6730 \N 1122 5 +3366 6731 6732 \N 1122 6 +3367 6733 6734 \N 1123 4 +3368 6735 6736 \N 1123 5 +3369 6737 6738 \N 1123 6 +3370 6739 6740 \N 1124 4 +3371 6741 6742 \N 1124 5 +3372 6743 6744 \N 1124 6 +3373 6745 6746 \N 1125 4 +3374 6747 6748 \N 1125 5 +3375 6749 6750 \N 1125 6 +3376 6751 6752 \N 1126 4 +3377 6753 6754 \N 1126 5 +3378 6755 6756 \N 1126 6 +3379 6757 6758 \N 1127 4 +3380 6759 6760 \N 1127 5 +3381 6761 6762 \N 1127 6 +3382 6763 6764 \N 1128 4 +3383 6765 6766 \N 1128 5 +3384 6767 6768 \N 1128 6 +3385 6769 6770 \N 1129 4 +3386 6771 6772 \N 1129 5 +3387 6773 6774 \N 1129 6 +3388 6775 6776 \N 1130 4 +3389 6777 6778 \N 1130 5 +3390 6779 6780 \N 1130 6 +3391 6781 6782 \N 1131 4 +3392 6783 6784 \N 1131 5 +3393 6785 6786 \N 1131 6 +3394 6787 6788 \N 1132 4 +3395 6789 6790 \N 1132 5 +3396 6791 6792 \N 1132 6 +3397 6793 6794 \N 1133 4 +3398 6795 6796 \N 1133 5 +3399 6797 6798 \N 1133 6 +3400 6799 6800 \N 1134 4 +3401 6801 6802 \N 1134 5 +3402 6803 6804 \N 1134 6 +3403 6805 6806 \N 1135 4 +3404 6807 6808 \N 1135 5 +3405 6809 6810 \N 1135 6 +3406 6811 6812 \N 1136 4 +3407 6813 6814 \N 1136 5 +3408 6815 6816 \N 1136 6 +3409 6817 6818 \N 1137 4 +3410 6819 6820 \N 1137 5 +3411 6821 6822 \N 1137 6 +3412 6823 6824 \N 1138 4 +3413 6825 6826 \N 1138 5 +3414 6827 6828 \N 1138 6 +3415 6829 6830 \N 1139 4 +3416 6831 6832 \N 1139 5 +3417 6833 6834 \N 1139 6 +3418 6835 6836 \N 1140 4 +3419 6837 6838 \N 1140 5 +3420 6839 6840 \N 1140 6 +3421 6841 6842 \N 1141 4 +3422 6843 6844 \N 1141 5 +3423 6845 6846 \N 1141 6 +3424 6847 6848 \N 1142 4 +3425 6849 6850 \N 1142 5 +3426 6851 6852 \N 1142 6 +3427 6853 6854 \N 1143 4 +3428 6855 6856 \N 1143 5 +3429 6857 6858 \N 1143 6 +3430 6859 6860 \N 1144 4 +3431 6861 6862 \N 1144 5 +3432 6863 6864 \N 1144 6 +3433 6865 6866 \N 1145 4 +3434 6867 6868 \N 1145 5 +3435 6869 6870 \N 1145 6 +3436 6871 6872 \N 1146 4 +3437 6873 6874 \N 1146 5 +3438 6875 6876 \N 1146 6 +3439 6877 6878 \N 1147 4 +3440 6879 6880 \N 1147 5 +3441 6881 6882 \N 1147 6 +3442 6883 6884 \N 1148 4 +3443 6885 6886 \N 1148 5 +3444 6887 6888 \N 1148 6 +3445 6889 6890 \N 1149 4 +3446 6891 6892 \N 1149 5 +3447 6893 6894 \N 1149 6 +3448 6895 6896 \N 1150 4 +3449 6897 6898 \N 1150 5 +3450 6899 6900 \N 1150 6 +3451 6901 6902 \N 1151 4 +3452 6903 6904 \N 1151 5 +3453 6905 6906 \N 1151 6 +3454 6907 6908 \N 1152 4 +3455 6909 6910 \N 1152 5 +3456 6911 6912 \N 1152 6 +3457 6913 6914 \N 1153 4 +3458 6915 6916 \N 1153 5 +3459 6917 6918 \N 1153 6 +3460 6919 6920 \N 1154 4 +3461 6921 6922 \N 1154 5 +3462 6923 6924 \N 1154 6 +3463 6925 6926 \N 1155 4 +3464 6927 6928 \N 1155 5 +3465 6929 6930 \N 1155 6 +3466 6931 6932 \N 1156 4 +3467 6933 6934 \N 1156 5 +3468 6935 6936 \N 1156 6 +3469 6937 6938 \N 1157 4 +3470 6939 6940 \N 1157 5 +3471 6941 6942 \N 1157 6 +3472 6943 6944 \N 1158 4 +3473 6945 6946 \N 1158 5 +3474 6947 6948 \N 1158 6 +3475 6949 6950 \N 1159 4 +3476 6951 6952 \N 1159 5 +3477 6953 6954 \N 1159 6 +3478 6955 6956 \N 1160 4 +3479 6957 6958 \N 1160 5 +3480 6959 6960 \N 1160 6 +3481 6961 6962 \N 1161 4 +3482 6963 6964 \N 1161 5 +3483 6965 6966 \N 1161 6 +3484 6967 6968 \N 1162 4 +3485 6969 6970 \N 1162 5 +3486 6971 6972 \N 1162 6 +3487 6973 6974 \N 1163 4 +3488 6975 6976 \N 1163 5 +3489 6977 6978 \N 1163 6 +3490 6979 6980 \N 1164 4 +3491 6981 6982 \N 1164 5 +3492 6983 6984 \N 1164 6 +3493 6985 6986 \N 1165 4 +3494 6987 6988 \N 1165 5 +3495 6989 6990 \N 1165 6 +3496 6991 6992 \N 1166 4 +3497 6993 6994 \N 1166 5 +3498 6995 6996 \N 1166 6 +3499 6997 6998 \N 1167 4 +3500 6999 7000 \N 1167 5 +3501 7001 7002 \N 1167 6 +3502 7003 7004 \N 1168 4 +3503 7005 7006 \N 1168 5 +3504 7007 7008 \N 1168 6 +3505 7009 7010 \N 1169 4 +3506 7011 7012 \N 1169 5 +3507 7013 7014 \N 1169 6 +3508 7015 7016 \N 1170 4 +3509 7017 7018 \N 1170 5 +3510 7019 7020 \N 1170 6 +3511 7021 7022 \N 1171 4 +3512 7023 7024 \N 1171 5 +3513 7025 7026 \N 1171 6 +3514 7027 7028 \N 1172 4 +3515 7029 7030 \N 1172 5 +3516 7031 7032 \N 1172 6 +3517 7033 7034 \N 1173 4 +3518 7035 7036 \N 1173 5 +3519 7037 7038 \N 1173 6 +3520 7039 7040 \N 1174 4 +3521 7041 7042 \N 1174 5 +3522 7043 7044 \N 1174 6 +3523 7045 7046 \N 1175 4 +3524 7047 7048 \N 1175 5 +3525 7049 7050 \N 1175 6 +3526 7051 7052 \N 1176 4 +3527 7053 7054 \N 1176 5 +3528 7055 7056 \N 1176 6 +3529 7057 7058 \N 1177 4 +3530 7059 7060 \N 1177 5 +3531 7061 7062 \N 1177 6 +3532 7063 7064 \N 1178 4 +3533 7065 7066 \N 1178 5 +3534 7067 7068 \N 1178 6 +3535 7069 7070 \N 1179 4 +3536 7071 7072 \N 1179 5 +3537 7073 7074 \N 1179 6 +3538 7075 7076 \N 1180 4 +3539 7077 7078 \N 1180 5 +3540 7079 7080 \N 1180 6 +3541 7081 7082 \N 1181 4 +3542 7083 7084 \N 1181 5 +3543 7085 7086 \N 1181 6 +3544 7087 7088 \N 1182 4 +3545 7089 7090 \N 1182 5 +3546 7091 7092 \N 1182 6 +3547 7093 7094 \N 1183 4 +3548 7095 7096 \N 1183 5 +3549 7097 7098 \N 1183 6 +3550 7099 7100 \N 1184 4 +3551 7101 7102 \N 1184 5 +3552 7103 7104 \N 1184 6 +3553 7105 7106 \N 1185 4 +3554 7107 7108 \N 1185 5 +3555 7109 7110 \N 1185 6 +3556 7111 7112 \N 1186 4 +3557 7113 7114 \N 1186 5 +3558 7115 7116 \N 1186 6 +3559 7117 7118 \N 1187 4 +3560 7119 7120 \N 1187 5 +3561 7121 7122 \N 1187 6 +3562 7123 7124 \N 1188 4 +3563 7125 7126 \N 1188 5 +3564 7127 7128 \N 1188 6 +3565 7129 7130 \N 1189 4 +3566 7131 7132 \N 1189 5 +3567 7133 7134 \N 1189 6 +3568 7135 7136 \N 1190 4 +3569 7137 7138 \N 1190 5 +3570 7139 7140 \N 1190 6 +3571 7141 7142 \N 1191 4 +3572 7143 7144 \N 1191 5 +3573 7145 7146 \N 1191 6 +3574 7147 7148 \N 1192 4 +3575 7149 7150 \N 1192 5 +3576 7151 7152 \N 1192 6 +3577 7153 7154 \N 1193 4 +3578 7155 7156 \N 1193 5 +3579 7157 7158 \N 1193 6 +3580 7159 7160 \N 1194 4 +3581 7161 7162 \N 1194 5 +3582 7163 7164 \N 1194 6 +3583 7165 7166 \N 1195 4 +3584 7167 7168 \N 1195 5 +3585 7169 7170 \N 1195 6 +3586 7171 7172 \N 1196 4 +3587 7173 7174 \N 1196 5 +3588 7175 7176 \N 1196 6 +3589 7177 7178 \N 1197 4 +3590 7179 7180 \N 1197 5 +3591 7181 7182 \N 1197 6 +3592 7183 7184 \N 1198 4 +3593 7185 7186 \N 1198 5 +3594 7187 7188 \N 1198 6 +3595 7189 7190 \N 1199 4 +3596 7191 7192 \N 1199 5 +3597 7193 7194 \N 1199 6 +3598 7195 7196 \N 1200 4 +3599 7197 7198 \N 1200 5 +3600 7199 7200 \N 1200 6 +3601 7201 7202 \N 1201 4 +3602 7203 7204 \N 1201 5 +3603 7205 7206 \N 1201 6 +3604 7207 7208 \N 1202 4 +3605 7209 7210 \N 1202 5 +3606 7211 7212 \N 1202 6 +3607 7213 7214 \N 1203 4 +3608 7215 7216 \N 1203 5 +3609 7217 7218 \N 1203 6 +3610 7219 7220 \N 1204 4 +3611 7221 7222 \N 1204 5 +3612 7223 7224 \N 1204 6 +3613 7225 7226 \N 1205 4 +3614 7227 7228 \N 1205 5 +3615 7229 7230 \N 1205 6 +3616 7231 7232 \N 1206 4 +3617 7233 7234 \N 1206 5 +3618 7235 7236 \N 1206 6 +3619 7237 7238 \N 1207 4 +3620 7239 7240 \N 1207 5 +3621 7241 7242 \N 1207 6 +3622 7243 7244 \N 1208 4 +3623 7245 7246 \N 1208 5 +3624 7247 7248 \N 1208 6 +3625 7249 7250 \N 1209 4 +3626 7251 7252 \N 1209 5 +3627 7253 7254 \N 1209 6 +3628 7255 7256 \N 1210 4 +3629 7257 7258 \N 1210 5 +3630 7259 7260 \N 1210 6 +3631 7261 7262 \N 1211 4 +3632 7263 7264 \N 1211 5 +3633 7265 7266 \N 1211 6 +3634 7267 7268 \N 1212 4 +3635 7269 7270 \N 1212 5 +3636 7271 7272 \N 1212 6 +3637 7273 7274 \N 1213 4 +3638 7275 7276 \N 1213 5 +3639 7277 7278 \N 1213 6 +3640 7279 7280 \N 1214 4 +3641 7281 7282 \N 1214 5 +3642 7283 7284 \N 1214 6 +3643 7285 7286 \N 1215 4 +3644 7287 7288 \N 1215 5 +3645 7289 7290 \N 1215 6 +3646 7291 7292 \N 1216 4 +3647 7293 7294 \N 1216 5 +3648 7295 7296 \N 1216 6 +3649 7297 7298 \N 1217 4 +3650 7299 7300 \N 1217 5 +3651 7301 7302 \N 1217 6 +3652 7303 7304 \N 1218 4 +3653 7305 7306 \N 1218 5 +3654 7307 7308 \N 1218 6 +3655 7309 7310 \N 1219 4 +3656 7311 7312 \N 1219 5 +3657 7313 7314 \N 1219 6 +3658 7315 7316 \N 1220 4 +3659 7317 7318 \N 1220 5 +3660 7319 7320 \N 1220 6 +3661 7321 7322 \N 1221 4 +3662 7323 7324 \N 1221 5 +3663 7325 7326 \N 1221 6 +3664 7327 7328 \N 1222 4 +3665 7329 7330 \N 1222 5 +3666 7331 7332 \N 1222 6 +3667 7333 7334 \N 1223 4 +3668 7335 7336 \N 1223 5 +3669 7337 7338 \N 1223 6 +3670 7339 7340 \N 1224 4 +3671 7341 7342 \N 1224 5 +3672 7343 7344 \N 1224 6 +3673 7345 7346 \N 1225 4 +3674 7347 7348 \N 1225 5 +3675 7349 7350 \N 1225 6 +3676 7351 7352 \N 1226 4 +3677 7353 7354 \N 1226 5 +3678 7355 7356 \N 1226 6 +3679 7357 7358 \N 1227 4 +3680 7359 7360 \N 1227 5 +3681 7361 7362 \N 1227 6 +3682 7363 7364 \N 1228 4 +3683 7365 7366 \N 1228 5 +3684 7367 7368 \N 1228 6 +3685 7369 7370 \N 1229 4 +3686 7371 7372 \N 1229 5 +3687 7373 7374 \N 1229 6 +3688 7375 7376 \N 1230 4 +3689 7377 7378 \N 1230 5 +3690 7379 7380 \N 1230 6 +3691 7381 7382 \N 1231 4 +3692 7383 7384 \N 1231 5 +3693 7385 7386 \N 1231 6 +3694 7387 7388 \N 1232 4 +3695 7389 7390 \N 1232 5 +3696 7391 7392 \N 1232 6 +3697 7393 7394 \N 1233 4 +3698 7395 7396 \N 1233 5 +3699 7397 7398 \N 1233 6 +3700 7399 7400 \N 1234 4 +3701 7401 7402 \N 1234 5 +3702 7403 7404 \N 1234 6 +3703 7405 7406 \N 1235 4 +3704 7407 7408 \N 1235 5 +3705 7409 7410 \N 1235 6 +3706 7411 7412 \N 1236 4 +3707 7413 7414 \N 1236 5 +3708 7415 7416 \N 1236 6 +3709 7417 7418 \N 1237 4 +3710 7419 7420 \N 1237 5 +3711 7421 7422 \N 1237 6 +3712 7423 7424 \N 1238 4 +3713 7425 7426 \N 1238 5 +3714 7427 7428 \N 1238 6 +3715 7429 7430 \N 1239 4 +3716 7431 7432 \N 1239 5 +3717 7433 7434 \N 1239 6 +3718 7435 7436 \N 1240 4 +3719 7437 7438 \N 1240 5 +3720 7439 7440 \N 1240 6 +3721 7441 7442 \N 1241 4 +3722 7443 7444 \N 1241 5 +3723 7445 7446 \N 1241 6 +3724 7447 7448 \N 1242 4 +3725 7449 7450 \N 1242 5 +3726 7451 7452 \N 1242 6 +3727 7453 7454 \N 1243 4 +3728 7455 7456 \N 1243 5 +3729 7457 7458 \N 1243 6 +3730 7459 7460 \N 1244 4 +3731 7461 7462 \N 1244 5 +3732 7463 7464 \N 1244 6 +3733 7465 7466 \N 1245 4 +3734 7467 7468 \N 1245 5 +3735 7469 7470 \N 1245 6 +3736 7471 7472 \N 1246 4 +3737 7473 7474 \N 1246 5 +3738 7475 7476 \N 1246 6 +3739 7477 7478 \N 1247 4 +3740 7479 7480 \N 1247 5 +3741 7481 7482 \N 1247 6 +3742 7483 7484 \N 1248 4 +3743 7485 7486 \N 1248 5 +3744 7487 7488 \N 1248 6 +3745 7489 7490 \N 1249 4 +3746 7491 7492 \N 1249 5 +3747 7493 7494 \N 1249 6 +3748 7495 7496 \N 1250 4 +3749 7497 7498 \N 1250 5 +3750 7499 7500 \N 1250 6 +3751 7501 7502 \N 1251 4 +3752 7503 7504 \N 1251 5 +3753 7505 7506 \N 1251 6 +3754 7507 7508 \N 1252 4 +3755 7509 7510 \N 1252 5 +3756 7511 7512 \N 1252 6 +3757 7513 7514 \N 1253 4 +3758 7515 7516 \N 1253 5 +3759 7517 7518 \N 1253 6 +3760 7519 7520 \N 1254 4 +3761 7521 7522 \N 1254 5 +3762 7523 7524 \N 1254 6 +3763 7525 7526 \N 1255 4 +3764 7527 7528 \N 1255 5 +3765 7529 7530 \N 1255 6 +3766 7531 7532 \N 1256 4 +3767 7533 7534 \N 1256 5 +3768 7535 7536 \N 1256 6 +3769 7537 7538 \N 1257 4 +3770 7539 7540 \N 1257 5 +3771 7541 7542 \N 1257 6 +3772 7543 7544 \N 1258 4 +3773 7545 7546 \N 1258 5 +3774 7547 7548 \N 1258 6 +3775 7549 7550 \N 1259 4 +3776 7551 7552 \N 1259 5 +3777 7553 7554 \N 1259 6 +3778 7555 7556 \N 1260 4 +3779 7557 7558 \N 1260 5 +3780 7559 7560 \N 1260 6 +3781 7561 7562 \N 1261 4 +3782 7563 7564 \N 1261 5 +3783 7565 7566 \N 1261 6 +3784 7567 7568 \N 1262 4 +3785 7569 7570 \N 1262 5 +3786 7571 7572 \N 1262 6 +3787 7573 7574 \N 1263 4 +3788 7575 7576 \N 1263 5 +3789 7577 7578 \N 1263 6 +3790 7579 7580 \N 1264 4 +3791 7581 7582 \N 1264 5 +3792 7583 7584 \N 1264 6 +3793 7585 7586 \N 1265 4 +3794 7587 7588 \N 1265 5 +3795 7589 7590 \N 1265 6 +3796 7591 7592 \N 1266 4 +3797 7593 7594 \N 1266 5 +3798 7595 7596 \N 1266 6 +3799 7597 7598 \N 1267 4 +3800 7599 7600 \N 1267 5 +3801 7601 7602 \N 1267 6 +3802 7603 7604 \N 1268 4 +3803 7605 7606 \N 1268 5 +3804 7607 7608 \N 1268 6 +3805 7609 7610 \N 1269 4 +3806 7611 7612 \N 1269 5 +3807 7613 7614 \N 1269 6 +3808 7615 7616 \N 1270 4 +3809 7617 7618 \N 1270 5 +3810 7619 7620 \N 1270 6 +3811 7621 7622 \N 1271 4 +3812 7623 7624 \N 1271 5 +3813 7625 7626 \N 1271 6 +3814 7627 7628 \N 1272 4 +3815 7629 7630 \N 1272 5 +3816 7631 7632 \N 1272 6 +3817 7633 7634 \N 1273 4 +3818 7635 7636 \N 1273 5 +3819 7637 7638 \N 1273 6 +3820 7639 7640 \N 1274 4 +3821 7641 7642 \N 1274 5 +3822 7643 7644 \N 1274 6 +3823 7645 7646 \N 1275 4 +3824 7647 7648 \N 1275 5 +3825 7649 7650 \N 1275 6 +3826 7651 7652 \N 1276 4 +3827 7653 7654 \N 1276 5 +3828 7655 7656 \N 1276 6 +3829 7657 7658 \N 1277 4 +3830 7659 7660 \N 1277 5 +3831 7661 7662 \N 1277 6 +3832 7663 7664 \N 1278 4 +3833 7665 7666 \N 1278 5 +3834 7667 7668 \N 1278 6 +3835 7669 7670 \N 1279 4 +3836 7671 7672 \N 1279 5 +3837 7673 7674 \N 1279 6 +3838 7675 7676 \N 1280 4 +3839 7677 7678 \N 1280 5 +3840 7679 7680 \N 1280 6 +3841 7681 7682 \N 1281 4 +3842 7683 7684 \N 1281 5 +3843 7685 7686 \N 1281 6 +3844 7687 7688 \N 1282 4 +3845 7689 7690 \N 1282 5 +3846 7691 7692 \N 1282 6 +3847 7693 7694 \N 1283 4 +3848 7695 7696 \N 1283 5 +3849 7697 7698 \N 1283 6 +3850 7699 7700 \N 1284 4 +3851 7701 7702 \N 1284 5 +3852 7703 7704 \N 1284 6 +3853 7705 7706 \N 1285 4 +3854 7707 7708 \N 1285 5 +3855 7709 7710 \N 1285 6 +3856 7711 7712 \N 1286 4 +3857 7713 7714 \N 1286 5 +3858 7715 7716 \N 1286 6 +3859 7717 7718 \N 1287 4 +3860 7719 7720 \N 1287 5 +3861 7721 7722 \N 1287 6 +3862 7723 7724 \N 1288 4 +3863 7725 7726 \N 1288 5 +3864 7727 7728 \N 1288 6 +3865 7729 7730 \N 1289 4 +3866 7731 7732 \N 1289 5 +3867 7733 7734 \N 1289 6 +3868 7735 7736 \N 1290 4 +3869 7737 7738 \N 1290 5 +3870 7739 7740 \N 1290 6 +3871 7741 7742 \N 1291 4 +3872 7743 7744 \N 1291 5 +3873 7745 7746 \N 1291 6 +3874 7747 7748 \N 1292 4 +3875 7749 7750 \N 1292 5 +3876 7751 7752 \N 1292 6 +3877 7753 7754 \N 1293 4 +3878 7755 7756 \N 1293 5 +3879 7757 7758 \N 1293 6 +3880 7759 7760 \N 1294 4 +3881 7761 7762 \N 1294 5 +3882 7763 7764 \N 1294 6 +3883 7765 7766 \N 1295 4 +3884 7767 7768 \N 1295 5 +3885 7769 7770 \N 1295 6 +3886 7771 7772 \N 1296 4 +3887 7773 7774 \N 1296 5 +3888 7775 7776 \N 1296 6 +3889 7777 7778 \N 1297 4 +3890 7779 7780 \N 1297 5 +3891 7781 7782 \N 1297 6 +3892 7783 7784 \N 1298 4 +3893 7785 7786 \N 1298 5 +3894 7787 7788 \N 1298 6 +3895 7789 7790 \N 1299 4 +3896 7791 7792 \N 1299 5 +3897 7793 7794 \N 1299 6 +3898 7795 7796 \N 1300 4 +3899 7797 7798 \N 1300 5 +3900 7799 7800 \N 1300 6 +3901 7801 7802 \N 1301 4 +3902 7803 7804 \N 1301 5 +3903 7805 7806 \N 1301 6 +3904 7807 7808 \N 1302 4 +3905 7809 7810 \N 1302 5 +3906 7811 7812 \N 1302 6 +3907 7813 7814 \N 1303 4 +3908 7815 7816 \N 1303 5 +3909 7817 7818 \N 1303 6 +3910 7819 7820 \N 1304 4 +3911 7821 7822 \N 1304 5 +3912 7823 7824 \N 1304 6 +3913 7825 7826 \N 1305 4 +3914 7827 7828 \N 1305 5 +3915 7829 7830 \N 1305 6 +3916 7831 7832 \N 1306 4 +3917 7833 7834 \N 1306 5 +3918 7835 7836 \N 1306 6 +3919 7837 7838 \N 1307 4 +3920 7839 7840 \N 1307 5 +3921 7841 7842 \N 1307 6 +3922 7843 7844 \N 1308 4 +3923 7845 7846 \N 1308 5 +3924 7847 7848 \N 1308 6 +3925 7849 7850 \N 1309 4 +3926 7851 7852 \N 1309 5 +3927 7853 7854 \N 1309 6 +3928 7855 7856 \N 1310 4 +3929 7857 7858 \N 1310 5 +3930 7859 7860 \N 1310 6 +3931 7861 7862 \N 1311 4 +3932 7863 7864 \N 1311 5 +3933 7865 7866 \N 1311 6 +3934 7867 7868 \N 1312 4 +3935 7869 7870 \N 1312 5 +3936 7871 7872 \N 1312 6 +3937 7873 7874 \N 1313 4 +3938 7875 7876 \N 1313 5 +3939 7877 7878 \N 1313 6 +3940 7879 7880 \N 1314 4 +3941 7881 7882 \N 1314 5 +3942 7883 7884 \N 1314 6 +3943 7885 7886 \N 1315 4 +3944 7887 7888 \N 1315 5 +3945 7889 7890 \N 1315 6 +3946 7891 7892 \N 1316 4 +3947 7893 7894 \N 1316 5 +3948 7895 7896 \N 1316 6 +3949 7897 7898 \N 1317 4 +3950 7899 7900 \N 1317 5 +3951 7901 7902 \N 1317 6 +3952 7903 7904 \N 1318 4 +3953 7905 7906 \N 1318 5 +3954 7907 7908 \N 1318 6 +3955 7909 7910 \N 1319 4 +3956 7911 7912 \N 1319 5 +3957 7913 7914 \N 1319 6 +3958 7915 7916 \N 1320 4 +3959 7917 7918 \N 1320 5 +3960 7919 7920 \N 1320 6 +3961 7921 7922 \N 1321 4 +3962 7923 7924 \N 1321 5 +3963 7925 7926 \N 1321 6 +3964 7927 7928 \N 1322 4 +3965 7929 7930 \N 1322 5 +3966 7931 7932 \N 1322 6 +3967 7933 7934 \N 1323 4 +3968 7935 7936 \N 1323 5 +3969 7937 7938 \N 1323 6 +3970 7939 7940 \N 1324 4 +3971 7941 7942 \N 1324 5 +3972 7943 7944 \N 1324 6 +3973 7945 7946 \N 1325 4 +3974 7947 7948 \N 1325 5 +3975 7949 7950 \N 1325 6 +3976 7951 7952 \N 1326 4 +3977 7953 7954 \N 1326 5 +3978 7955 7956 \N 1326 6 +3979 7957 7958 \N 1327 4 +3980 7959 7960 \N 1327 5 +3981 7961 7962 \N 1327 6 +3982 7963 7964 \N 1328 4 +3983 7965 7966 \N 1328 5 +3984 7967 7968 \N 1328 6 +3985 7969 7970 \N 1329 4 +3986 7971 7972 \N 1329 5 +3987 7973 7974 \N 1329 6 +3988 7975 7976 \N 1330 4 +3989 7977 7978 \N 1330 5 +3990 7979 7980 \N 1330 6 +3991 7981 7982 \N 1331 4 +3992 7983 7984 \N 1331 5 +3993 7985 7986 \N 1331 6 +3994 7987 7988 \N 1332 4 +3995 7989 7990 \N 1332 5 +3996 7991 7992 \N 1332 6 +3997 7993 7994 \N 1333 4 +3998 7995 7996 \N 1333 5 +3999 7997 7998 \N 1333 6 +4000 7999 8000 \N 1334 4 +4001 8001 8002 \N 1334 5 +4002 8003 8004 \N 1334 6 +4003 8005 8006 \N 1335 4 +4004 8007 8008 \N 1335 5 +4005 8009 8010 \N 1335 6 +4006 8011 8012 \N 1336 4 +4007 8013 8014 \N 1336 5 +4008 8015 8016 \N 1336 6 +4009 8017 8018 \N 1337 4 +4010 8019 8020 \N 1337 5 +4011 8021 8022 \N 1337 6 +4012 8023 8024 \N 1338 4 +4013 8025 8026 \N 1338 5 +4014 8027 8028 \N 1338 6 +4015 8029 8030 \N 1339 4 +4016 8031 8032 \N 1339 5 +4017 8033 8034 \N 1339 6 +4018 8035 8036 \N 1340 4 +4019 8037 8038 \N 1340 5 +4020 8039 8040 \N 1340 6 +4021 8041 8042 \N 1341 4 +4022 8043 8044 \N 1341 5 +4023 8045 8046 \N 1341 6 +4024 8047 8048 \N 1342 4 +4025 8049 8050 \N 1342 5 +4026 8051 8052 \N 1342 6 +4027 8053 8054 \N 1343 4 +4028 8055 8056 \N 1343 5 +4029 8057 8058 \N 1343 6 +4030 8059 8060 \N 1344 4 +4031 8061 8062 \N 1344 5 +4032 8063 8064 \N 1344 6 +4033 8065 8066 \N 1345 4 +4034 8067 8068 \N 1345 5 +4035 8069 8070 \N 1345 6 +4036 8071 8072 \N 1346 4 +4037 8073 8074 \N 1346 5 +4038 8075 8076 \N 1346 6 +4039 8077 8078 \N 1347 4 +4040 8079 8080 \N 1347 5 +4041 8081 8082 \N 1347 6 +4042 8083 8084 \N 1348 4 +4043 8085 8086 \N 1348 5 +4044 8087 8088 \N 1348 6 +4045 8089 8090 \N 1349 4 +4046 8091 8092 \N 1349 5 +4047 8093 8094 \N 1349 6 +4048 8095 8096 \N 1350 4 +4049 8097 8098 \N 1350 5 +4050 8099 8100 \N 1350 6 +4051 8101 8102 \N 1351 4 +4052 8103 8104 \N 1351 5 +4053 8105 8106 \N 1351 6 +4054 8107 8108 \N 1352 4 +4055 8109 8110 \N 1352 5 +4056 8111 8112 \N 1352 6 +4057 8113 8114 \N 1353 4 +4058 8115 8116 \N 1353 5 +4059 8117 8118 \N 1353 6 +4060 8119 8120 \N 1354 4 +4061 8121 8122 \N 1354 5 +4062 8123 8124 \N 1354 6 +4063 8125 8126 \N 1355 4 +4064 8127 8128 \N 1355 5 +4065 8129 8130 \N 1355 6 +4066 8131 8132 \N 1356 4 +4067 8133 8134 \N 1356 5 +4068 8135 8136 \N 1356 6 +4069 8137 8138 \N 1357 4 +4070 8139 8140 \N 1357 5 +4071 8141 8142 \N 1357 6 +4072 8143 8144 \N 1358 4 +4073 8145 8146 \N 1358 5 +4074 8147 8148 \N 1358 6 +4075 8149 8150 \N 1359 4 +4076 8151 8152 \N 1359 5 +4077 8153 8154 \N 1359 6 +4078 8155 8156 \N 1360 4 +4079 8157 8158 \N 1360 5 +4080 8159 8160 \N 1360 6 +4081 8161 8162 \N 1361 4 +4082 8163 8164 \N 1361 5 +4083 8165 8166 \N 1361 6 +4084 8167 8168 \N 1362 4 +4085 8169 8170 \N 1362 5 +4086 8171 8172 \N 1362 6 +4087 8173 8174 \N 1363 4 +4088 8175 8176 \N 1363 5 +4089 8177 8178 \N 1363 6 +4090 8179 8180 \N 1364 4 +4091 8181 8182 \N 1364 5 +4092 8183 8184 \N 1364 6 +4093 8185 8186 \N 1365 4 +4094 8187 8188 \N 1365 5 +4095 8189 8190 \N 1365 6 +4096 8191 8192 \N 1366 4 +4097 8193 8194 \N 1366 5 +4098 8195 8196 \N 1366 6 +4099 8197 8198 \N 1367 4 +4100 8199 8200 \N 1367 5 +4101 8201 8202 \N 1367 6 +4102 8203 8204 \N 1368 4 +4103 8205 8206 \N 1368 5 +4104 8207 8208 \N 1368 6 +4105 8209 8210 \N 1369 4 +4106 8211 8212 \N 1369 5 +4107 8213 8214 \N 1369 6 +4108 8215 8216 \N 1370 4 +4109 8217 8218 \N 1370 5 +4110 8219 8220 \N 1370 6 +4111 8221 8222 \N 1371 4 +4112 8223 8224 \N 1371 5 +4113 8225 8226 \N 1371 6 +4114 8227 8228 \N 1372 4 +4115 8229 8230 \N 1372 5 +4116 8231 8232 \N 1372 6 +4117 8233 8234 \N 1373 4 +4118 8235 8236 \N 1373 5 +4119 8237 8238 \N 1373 6 +4120 8239 8240 \N 1374 4 +4121 8241 8242 \N 1374 5 +4122 8243 8244 \N 1374 6 +4123 8245 8246 \N 1375 4 +4124 8247 8248 \N 1375 5 +4125 8249 8250 \N 1375 6 +4126 8251 8252 \N 1376 4 +4127 8253 8254 \N 1376 5 +4128 8255 8256 \N 1376 6 +4129 8257 8258 \N 1377 4 +4130 8259 8260 \N 1377 5 +4131 8261 8262 \N 1377 6 +4132 8263 8264 \N 1378 4 +4133 8265 8266 \N 1378 5 +4134 8267 8268 \N 1378 6 +4135 8269 8270 \N 1379 4 +4136 8271 8272 \N 1379 5 +4137 8273 8274 \N 1379 6 +4138 8275 8276 \N 1380 4 +4139 8277 8278 \N 1380 5 +4140 8279 8280 \N 1380 6 +4141 8281 8282 \N 1381 4 +4142 8283 8284 \N 1381 5 +4143 8285 8286 \N 1381 6 +4144 8287 8288 \N 1382 4 +4145 8289 8290 \N 1382 5 +4146 8291 8292 \N 1382 6 +4147 8293 8294 \N 1383 4 +4148 8295 8296 \N 1383 5 +4149 8297 8298 \N 1383 6 +4150 8299 8300 \N 1384 4 +4151 8301 8302 \N 1384 5 +4152 8303 8304 \N 1384 6 +4153 8305 8306 \N 1385 4 +4154 8307 8308 \N 1385 5 +4155 8309 8310 \N 1385 6 +4156 8311 8312 \N 1386 4 +4157 8313 8314 \N 1386 5 +4158 8315 8316 \N 1386 6 +4159 8317 8318 \N 1387 4 +4160 8319 8320 \N 1387 5 +4161 8321 8322 \N 1387 6 +4162 8323 8324 \N 1388 4 +4163 8325 8326 \N 1388 5 +4164 8327 8328 \N 1388 6 +4165 8329 8330 \N 1389 4 +4166 8331 8332 \N 1389 5 +4167 8333 8334 \N 1389 6 +4168 8335 8336 \N 1390 4 +4169 8337 8338 \N 1390 5 +4170 8339 8340 \N 1390 6 +4171 8341 8342 \N 1391 4 +4172 8343 8344 \N 1391 5 +4173 8345 8346 \N 1391 6 +4174 8347 8348 \N 1392 4 +4175 8349 8350 \N 1392 5 +4176 8351 8352 \N 1392 6 +4177 8353 8354 \N 1393 4 +4178 8355 8356 \N 1393 5 +4179 8357 8358 \N 1393 6 +4180 8359 8360 \N 1394 4 +4181 8361 8362 \N 1394 5 +4182 8363 8364 \N 1394 6 +4183 8365 8366 \N 1395 4 +4184 8367 8368 \N 1395 5 +4185 8369 8370 \N 1395 6 +4186 8371 8372 \N 1396 4 +4187 8373 8374 \N 1396 5 +4188 8375 8376 \N 1396 6 +4189 8377 8378 \N 1397 4 +4190 8379 8380 \N 1397 5 +4191 8381 8382 \N 1397 6 +4192 8383 8384 \N 1398 4 +4193 8385 8386 \N 1398 5 +4194 8387 8388 \N 1398 6 +4195 8389 8390 \N 1399 4 +4196 8391 8392 \N 1399 5 +4197 8393 8394 \N 1399 6 +4198 8395 8396 \N 1400 4 +4199 8397 8398 \N 1400 5 +4200 8399 8400 \N 1400 6 +4201 8401 8402 \N 1401 4 +4202 8403 8404 \N 1401 5 +4203 8405 8406 \N 1401 6 +4204 8407 8408 \N 1402 4 +4205 8409 8410 \N 1402 5 +4206 8411 8412 \N 1402 6 +4207 8413 8414 \N 1403 4 +4208 8415 8416 \N 1403 5 +4209 8417 8418 \N 1403 6 +4210 8419 8420 \N 1404 4 +4211 8421 8422 \N 1404 5 +4212 8423 8424 \N 1404 6 +4213 8425 8426 \N 1405 4 +4214 8427 8428 \N 1405 5 +4215 8429 8430 \N 1405 6 +4216 8431 8432 \N 1406 4 +4217 8433 8434 \N 1406 5 +4218 8435 8436 \N 1406 6 +4219 8437 8438 \N 1407 4 +4220 8439 8440 \N 1407 5 +4221 8441 8442 \N 1407 6 +4222 8443 8444 \N 1408 4 +4223 8445 8446 \N 1408 5 +4224 8447 8448 \N 1408 6 +4225 8449 8450 \N 1409 4 +4226 8451 8452 \N 1409 5 +4227 8453 8454 \N 1409 6 +4228 8455 8456 \N 1410 4 +4229 8457 8458 \N 1410 5 +4230 8459 8460 \N 1410 6 +4231 8461 8462 \N 1411 4 +4232 8463 8464 \N 1411 5 +4233 8465 8466 \N 1411 6 +4234 8467 8468 \N 1412 4 +4235 8469 8470 \N 1412 5 +4236 8471 8472 \N 1412 6 +4237 8473 8474 \N 1413 4 +4238 8475 8476 \N 1413 5 +4239 8477 8478 \N 1413 6 +4240 8479 8480 \N 1414 4 +4241 8481 8482 \N 1414 5 +4242 8483 8484 \N 1414 6 +4243 8485 8486 \N 1415 4 +4244 8487 8488 \N 1415 5 +4245 8489 8490 \N 1415 6 +4246 8491 8492 \N 1416 4 +4247 8493 8494 \N 1416 5 +4248 8495 8496 \N 1416 6 +4249 8497 8498 \N 1417 4 +4250 8499 8500 \N 1417 5 +4251 8501 8502 \N 1417 6 +4252 8503 8504 \N 1418 4 +4253 8505 8506 \N 1418 5 +4254 8507 8508 \N 1418 6 +4255 8509 8510 \N 1419 4 +4256 8511 8512 \N 1419 5 +4257 8513 8514 \N 1419 6 +4258 8515 8516 \N 1420 4 +4259 8517 8518 \N 1420 5 +4260 8519 8520 \N 1420 6 +4261 8521 8522 \N 1421 4 +4262 8523 8524 \N 1421 5 +4263 8525 8526 \N 1421 6 +4264 8527 8528 \N 1422 4 +4265 8529 8530 \N 1422 5 +4266 8531 8532 \N 1422 6 +4267 8533 8534 \N 1423 4 +4268 8535 8536 \N 1423 5 +4269 8537 8538 \N 1423 6 +4270 8539 8540 \N 1424 4 +4271 8541 8542 \N 1424 5 +4272 8543 8544 \N 1424 6 +4273 8545 8546 \N 1425 4 +4274 8547 8548 \N 1425 5 +4275 8549 8550 \N 1425 6 +4276 8551 8552 \N 1426 4 +4277 8553 8554 \N 1426 5 +4278 8555 8556 \N 1426 6 +4279 8557 8558 \N 1427 4 +4280 8559 8560 \N 1427 5 +4281 8561 8562 \N 1427 6 +4282 8563 8564 \N 1428 4 +4283 8565 8566 \N 1428 5 +4284 8567 8568 \N 1428 6 +4285 8569 8570 \N 1429 4 +4286 8571 8572 \N 1429 5 +4287 8573 8574 \N 1429 6 +4288 8575 8576 \N 1430 4 +4289 8577 8578 \N 1430 5 +4290 8579 8580 \N 1430 6 +4291 8581 8582 \N 1431 4 +4292 8583 8584 \N 1431 5 +4293 8585 8586 \N 1431 6 +4294 8587 8588 \N 1432 4 +4295 8589 8590 \N 1432 5 +4296 8591 8592 \N 1432 6 +4297 8593 8594 \N 1433 4 +4298 8595 8596 \N 1433 5 +4299 8597 8598 \N 1433 6 +4300 8599 8600 \N 1434 4 +4301 8601 8602 \N 1434 5 +4302 8603 8604 \N 1434 6 +4303 8605 8606 \N 1435 4 +4304 8607 8608 \N 1435 5 +4305 8609 8610 \N 1435 6 +4306 8611 8612 \N 1436 4 +4307 8613 8614 \N 1436 5 +4308 8615 8616 \N 1436 6 +4309 8617 8618 \N 1437 4 +4310 8619 8620 \N 1437 5 +4311 8621 8622 \N 1437 6 +4312 8623 8624 \N 1438 4 +4313 8625 8626 \N 1438 5 +4314 8627 8628 \N 1438 6 +4315 8629 8630 \N 1439 4 +4316 8631 8632 \N 1439 5 +4317 8633 8634 \N 1439 6 +4318 8635 8636 \N 1440 4 +4319 8637 8638 \N 1440 5 +4320 8639 8640 \N 1440 6 +4321 8641 8642 \N 1441 4 +4322 8643 8644 \N 1441 5 +4323 8645 8646 \N 1441 6 +4324 8647 8648 \N 1442 4 +4325 8649 8650 \N 1442 5 +4326 8651 8652 \N 1442 6 +4327 8653 8654 \N 1443 4 +4328 8655 8656 \N 1443 5 +4329 8657 8658 \N 1443 6 +4330 8659 8660 \N 1444 4 +4331 8661 8662 \N 1444 5 +4332 8663 8664 \N 1444 6 +4333 8665 8666 \N 1445 4 +4334 8667 8668 \N 1445 5 +4335 8669 8670 \N 1445 6 +4336 8671 8672 \N 1446 4 +4337 8673 8674 \N 1446 5 +4338 8675 8676 \N 1446 6 +4339 8677 8678 \N 1447 4 +4340 8679 8680 \N 1447 5 +4341 8681 8682 \N 1447 6 +4342 8683 8684 \N 1448 4 +4343 8685 8686 \N 1448 5 +4344 8687 8688 \N 1448 6 +4345 8689 8690 \N 1449 4 +4346 8691 8692 \N 1449 5 +4347 8693 8694 \N 1449 6 +4348 8695 8696 \N 1450 4 +4349 8697 8698 \N 1450 5 +4350 8699 8700 \N 1450 6 +4351 8701 8702 \N 1451 4 +4352 8703 8704 \N 1451 5 +4353 8705 8706 \N 1451 6 +4354 8707 8708 \N 1452 4 +4355 8709 8710 \N 1452 5 +4356 8711 8712 \N 1452 6 +4357 8713 8714 \N 1453 4 +4358 8715 8716 \N 1453 5 +4359 8717 8718 \N 1453 6 +4360 8719 8720 \N 1454 4 +4361 8721 8722 \N 1454 5 +4362 8723 8724 \N 1454 6 +4363 8725 8726 \N 1455 4 +4364 8727 8728 \N 1455 5 +4365 8729 8730 \N 1455 6 +4366 8731 8732 \N 1456 4 +4367 8733 8734 \N 1456 5 +4368 8735 8736 \N 1456 6 +4369 8737 8738 \N 1457 4 +4370 8739 8740 \N 1457 5 +4371 8741 8742 \N 1457 6 +4372 8743 8744 \N 1458 4 +4373 8745 8746 \N 1458 5 +4374 8747 8748 \N 1458 6 +4375 8749 8750 \N 1459 4 +4376 8751 8752 \N 1459 5 +4377 8753 8754 \N 1459 6 +4378 8755 8756 \N 1460 4 +4379 8757 8758 \N 1460 5 +4380 8759 8760 \N 1460 6 +4381 8761 8762 \N 1461 4 +4382 8763 8764 \N 1461 5 +4383 8765 8766 \N 1461 6 +4384 8767 8768 \N 1462 4 +4385 8769 8770 \N 1462 5 +4386 8771 8772 \N 1462 6 +4387 8773 8774 \N 1463 4 +4388 8775 8776 \N 1463 5 +4389 8777 8778 \N 1463 6 +4390 8779 8780 \N 1464 4 +4391 8781 8782 \N 1464 5 +4392 8783 8784 \N 1464 6 +4393 8785 8786 \N 1465 4 +4394 8787 8788 \N 1465 5 +4395 8789 8790 \N 1465 6 +4396 8791 8792 \N 1466 4 +4397 8793 8794 \N 1466 5 +4398 8795 8796 \N 1466 6 +4399 8797 8798 \N 1467 4 +4400 8799 8800 \N 1467 5 +4401 8801 8802 \N 1467 6 +4402 8803 8804 \N 1468 4 +4403 8805 8806 \N 1468 5 +4404 8807 8808 \N 1468 6 +4405 8809 8810 \N 1469 4 +4406 8811 8812 \N 1469 5 +4407 8813 8814 \N 1469 6 +4408 8815 8816 \N 1470 4 +4409 8817 8818 \N 1470 5 +4410 8819 8820 \N 1470 6 +4411 8821 8822 \N 1471 4 +4412 8823 8824 \N 1471 5 +4413 8825 8826 \N 1471 6 +4414 8827 8828 \N 1472 4 +4415 8829 8830 \N 1472 5 +4416 8831 8832 \N 1472 6 +4417 8833 8834 \N 1473 4 +4418 8835 8836 \N 1473 5 +4419 8837 8838 \N 1473 6 +4420 8839 8840 \N 1474 4 +4421 8841 8842 \N 1474 5 +4422 8843 8844 \N 1474 6 +4423 8845 8846 \N 1475 4 +4424 8847 8848 \N 1475 5 +4425 8849 8850 \N 1475 6 +4426 8851 8852 \N 1476 4 +4427 8853 8854 \N 1476 5 +4428 8855 8856 \N 1476 6 +4429 8857 8858 \N 1477 4 +4430 8859 8860 \N 1477 5 +4431 8861 8862 \N 1477 6 +4432 8863 8864 \N 1478 4 +4433 8865 8866 \N 1478 5 +4434 8867 8868 \N 1478 6 +4435 8869 8870 \N 1479 4 +4436 8871 8872 \N 1479 5 +4437 8873 8874 \N 1479 6 +4438 8875 8876 \N 1480 4 +4439 8877 8878 \N 1480 5 +4440 8879 8880 \N 1480 6 +4441 8881 8882 \N 1481 4 +4442 8883 8884 \N 1481 5 +4443 8885 8886 \N 1481 6 +4444 8887 8888 \N 1482 4 +4445 8889 8890 \N 1482 5 +4446 8891 8892 \N 1482 6 +4447 8893 8894 \N 1483 4 +4448 8895 8896 \N 1483 5 +4449 8897 8898 \N 1483 6 +4450 8899 8900 \N 1484 4 +4451 8901 8902 \N 1484 5 +4452 8903 8904 \N 1484 6 +4453 8905 8906 \N 1485 4 +4454 8907 8908 \N 1485 5 +4455 8909 8910 \N 1485 6 +4456 8911 8912 \N 1486 4 +4457 8913 8914 \N 1486 5 +4458 8915 8916 \N 1486 6 +4459 8917 8918 \N 1487 4 +4460 8919 8920 \N 1487 5 +4461 8921 8922 \N 1487 6 +4462 8923 8924 \N 1488 4 +4463 8925 8926 \N 1488 5 +4464 8927 8928 \N 1488 6 +4465 8929 8930 \N 1489 4 +4466 8931 8932 \N 1489 5 +4467 8933 8934 \N 1489 6 +4468 8935 8936 \N 1490 4 +4469 8937 8938 \N 1490 5 +4470 8939 8940 \N 1490 6 +4471 8941 8942 \N 1491 4 +4472 8943 8944 \N 1491 5 +4473 8945 8946 \N 1491 6 +4474 8947 8948 \N 1492 4 +4475 8949 8950 \N 1492 5 +4476 8951 8952 \N 1492 6 +4477 8953 8954 \N 1493 4 +4478 8955 8956 \N 1493 5 +4479 8957 8958 \N 1493 6 +4480 8959 8960 \N 1494 4 +4481 8961 8962 \N 1494 5 +4482 8963 8964 \N 1494 6 +4483 8965 8966 \N 1495 4 +4484 8967 8968 \N 1495 5 +4485 8969 8970 \N 1495 6 +4486 8971 8972 \N 1496 4 +4487 8973 8974 \N 1496 5 +4488 8975 8976 \N 1496 6 +4489 8977 8978 \N 1497 4 +4490 8979 8980 \N 1497 5 +4491 8981 8982 \N 1497 6 +4492 8983 8984 \N 1498 4 +4493 8985 8986 \N 1498 5 +4494 8987 8988 \N 1498 6 +4495 8989 8990 \N 1499 4 +4496 8991 8992 \N 1499 5 +4497 8993 8994 \N 1499 6 +4498 8995 8996 \N 1500 4 +4499 8997 8998 \N 1500 5 +4500 8999 9000 \N 1500 6 +4501 9001 9002 \N 1501 4 +4502 9003 9004 \N 1501 5 +4503 9005 9006 \N 1501 6 +4504 9007 9008 \N 1502 4 +4505 9009 9010 \N 1502 5 +4506 9011 9012 \N 1502 6 +4507 9013 9014 \N 1503 4 +4508 9015 9016 \N 1503 5 +4509 9017 9018 \N 1503 6 +4510 9019 9020 \N 1504 4 +4511 9021 9022 \N 1504 5 +4512 9023 9024 \N 1504 6 +4513 9025 9026 \N 1505 4 +4514 9027 9028 \N 1505 5 +4515 9029 9030 \N 1505 6 +4516 9031 9032 \N 1506 4 +4517 9033 9034 \N 1506 5 +4518 9035 9036 \N 1506 6 +4519 9037 9038 \N 1507 4 +4520 9039 9040 \N 1507 5 +4521 9041 9042 \N 1507 6 +4522 9043 9044 \N 1508 4 +4523 9045 9046 \N 1508 5 +4524 9047 9048 \N 1508 6 +4525 9049 9050 \N 1509 4 +4526 9051 9052 \N 1509 5 +4527 9053 9054 \N 1509 6 +4528 9055 9056 \N 1510 4 +4529 9057 9058 \N 1510 5 +4530 9059 9060 \N 1510 6 +4531 9061 9062 \N 1511 4 +4532 9063 9064 \N 1511 5 +4533 9065 9066 \N 1511 6 +4534 9067 9068 \N 1512 4 +4535 9069 9070 \N 1512 5 +4536 9071 9072 \N 1512 6 +4537 9073 9074 \N 1513 4 +4538 9075 9076 \N 1513 5 +4539 9077 9078 \N 1513 6 +4540 9079 9080 \N 1514 4 +4541 9081 9082 \N 1514 5 +4542 9083 9084 \N 1514 6 +4543 9085 9086 \N 1515 4 +4544 9087 9088 \N 1515 5 +4545 9089 9090 \N 1515 6 +4546 9091 9092 \N 1516 4 +4547 9093 9094 \N 1516 5 +4548 9095 9096 \N 1516 6 +4549 9097 9098 \N 1517 4 +4550 9099 9100 \N 1517 5 +4551 9101 9102 \N 1517 6 +4552 9103 9104 \N 1518 4 +4553 9105 9106 \N 1518 5 +4554 9107 9108 \N 1518 6 +4555 9109 9110 \N 1519 4 +4556 9111 9112 \N 1519 5 +4557 9113 9114 \N 1519 6 +4558 9115 9116 \N 1520 4 +4559 9117 9118 \N 1520 5 +4560 9119 9120 \N 1520 6 +4561 9121 9122 \N 1521 4 +4562 9123 9124 \N 1521 5 +4563 9125 9126 \N 1521 6 +4564 9127 9128 \N 1522 4 +4565 9129 9130 \N 1522 5 +4566 9131 9132 \N 1522 6 +4567 9133 9134 \N 1523 4 +4568 9135 9136 \N 1523 5 +4569 9137 9138 \N 1523 6 +4570 9139 9140 \N 1524 4 +4571 9141 9142 \N 1524 5 +4572 9143 9144 \N 1524 6 +4573 9145 9146 \N 1525 4 +4574 9147 9148 \N 1525 5 +4575 9149 9150 \N 1525 6 +4576 9151 9152 \N 1526 4 +4577 9153 9154 \N 1526 5 +4578 9155 9156 \N 1526 6 +4579 9157 9158 \N 1527 4 +4580 9159 9160 \N 1527 5 +4581 9161 9162 \N 1527 6 +4582 9163 9164 \N 1528 4 +4583 9165 9166 \N 1528 5 +4584 9167 9168 \N 1528 6 +4585 9169 9170 \N 1529 4 +4586 9171 9172 \N 1529 5 +4587 9173 9174 \N 1529 6 +4588 9175 9176 \N 1530 4 +4589 9177 9178 \N 1530 5 +4590 9179 9180 \N 1530 6 +4591 9181 9182 \N 1531 4 +4592 9183 9184 \N 1531 5 +4593 9185 9186 \N 1531 6 +4594 9187 9188 \N 1532 4 +4595 9189 9190 \N 1532 5 +4596 9191 9192 \N 1532 6 +4597 9193 9194 \N 1533 4 +4598 9195 9196 \N 1533 5 +4599 9197 9198 \N 1533 6 +4600 9199 9200 \N 1534 4 +4601 9201 9202 \N 1534 5 +4602 9203 9204 \N 1534 6 +4603 9205 9206 \N 1535 4 +4604 9207 9208 \N 1535 5 +4605 9209 9210 \N 1535 6 +4606 9211 9212 \N 1536 4 +4607 9213 9214 \N 1536 5 +4608 9215 9216 \N 1536 6 +4609 9217 9218 \N 1537 4 +4610 9219 9220 \N 1537 5 +4611 9221 9222 \N 1537 6 +4612 9223 9224 \N 1538 4 +4613 9225 9226 \N 1538 5 +4614 9227 9228 \N 1538 6 +4615 9229 9230 \N 1539 4 +4616 9231 9232 \N 1539 5 +4617 9233 9234 \N 1539 6 +4618 9235 9236 \N 1540 4 +4619 9237 9238 \N 1540 5 +4620 9239 9240 \N 1540 6 +4621 9241 9242 \N 1541 4 +4622 9243 9244 \N 1541 5 +4623 9245 9246 \N 1541 6 +4624 9247 9248 \N 1542 4 +4625 9249 9250 \N 1542 5 +4626 9251 9252 \N 1542 6 +4627 9253 9254 \N 1543 4 +4628 9255 9256 \N 1543 5 +4629 9257 9258 \N 1543 6 +4630 9259 9260 \N 1544 4 +4631 9261 9262 \N 1544 5 +4632 9263 9264 \N 1544 6 +4633 9265 9266 \N 1545 4 +4634 9267 9268 \N 1545 5 +4635 9269 9270 \N 1545 6 +4636 9271 9272 \N 1546 4 +4637 9273 9274 \N 1546 5 +4638 9275 9276 \N 1546 6 +4639 9277 9278 \N 1547 4 +4640 9279 9280 \N 1547 5 +4641 9281 9282 \N 1547 6 +4642 9283 9284 \N 1548 4 +4643 9285 9286 \N 1548 5 +4644 9287 9288 \N 1548 6 +4645 9289 9290 \N 1549 4 +4646 9291 9292 \N 1549 5 +4647 9293 9294 \N 1549 6 +4648 9295 9296 \N 1550 4 +4649 9297 9298 \N 1550 5 +4650 9299 9300 \N 1550 6 +4651 9301 9302 \N 1551 4 +4652 9303 9304 \N 1551 5 +4653 9305 9306 \N 1551 6 +4654 9307 9308 \N 1552 4 +4655 9309 9310 \N 1552 5 +4656 9311 9312 \N 1552 6 +4657 9313 9314 \N 1553 4 +4658 9315 9316 \N 1553 5 +4659 9317 9318 \N 1553 6 +4660 9319 9320 \N 1554 4 +4661 9321 9322 \N 1554 5 +4662 9323 9324 \N 1554 6 +4663 9325 9326 \N 1555 4 +4664 9327 9328 \N 1555 5 +4665 9329 9330 \N 1555 6 +4666 9331 9332 \N 1556 4 +4667 9333 9334 \N 1556 5 +4668 9335 9336 \N 1556 6 +4669 9337 9338 \N 1557 4 +4670 9339 9340 \N 1557 5 +4671 9341 9342 \N 1557 6 +4672 9343 9344 \N 1558 4 +4673 9345 9346 \N 1558 5 +4674 9347 9348 \N 1558 6 +4675 9349 9350 \N 1559 4 +4676 9351 9352 \N 1559 5 +4677 9353 9354 \N 1559 6 +4678 9355 9356 \N 1560 4 +4679 9357 9358 \N 1560 5 +4680 9359 9360 \N 1560 6 +4681 9361 9362 \N 1561 4 +4682 9363 9364 \N 1561 5 +4683 9365 9366 \N 1561 6 +4684 9367 9368 \N 1562 4 +4685 9369 9370 \N 1562 5 +4686 9371 9372 \N 1562 6 +4687 9373 9374 \N 1563 4 +4688 9375 9376 \N 1563 5 +4689 9377 9378 \N 1563 6 +4690 9379 9380 \N 1564 4 +4691 9381 9382 \N 1564 5 +4692 9383 9384 \N 1564 6 +4693 9385 9386 \N 1565 4 +4694 9387 9388 \N 1565 5 +4695 9389 9390 \N 1565 6 +4696 9391 9392 \N 1566 4 +4697 9393 9394 \N 1566 5 +4698 9395 9396 \N 1566 6 +4699 9397 9398 \N 1567 4 +4700 9399 9400 \N 1567 5 +4701 9401 9402 \N 1567 6 +4702 9403 9404 \N 1568 4 +4703 9405 9406 \N 1568 5 +4704 9407 9408 \N 1568 6 +4705 9409 9410 \N 1569 4 +4706 9411 9412 \N 1569 5 +4707 9413 9414 \N 1569 6 +4708 9415 9416 \N 1570 4 +4709 9417 9418 \N 1570 5 +4710 9419 9420 \N 1570 6 +4711 9421 9422 \N 1571 4 +4712 9423 9424 \N 1571 5 +4713 9425 9426 \N 1571 6 +4714 9427 9428 \N 1572 4 +4715 9429 9430 \N 1572 5 +4716 9431 9432 \N 1572 6 +4717 9433 9434 \N 1573 4 +4718 9435 9436 \N 1573 5 +4719 9437 9438 \N 1573 6 +4720 9439 9440 \N 1574 4 +4721 9441 9442 \N 1574 5 +4722 9443 9444 \N 1574 6 +4723 9445 9446 \N 1575 4 +4724 9447 9448 \N 1575 5 +4725 9449 9450 \N 1575 6 +4726 9451 9452 \N 1576 4 +4727 9453 9454 \N 1576 5 +4728 9455 9456 \N 1576 6 +4729 9457 9458 \N 1577 4 +4730 9459 9460 \N 1577 5 +4731 9461 9462 \N 1577 6 +4732 9463 9464 \N 1578 4 +4733 9465 9466 \N 1578 5 +4734 9467 9468 \N 1578 6 +4735 9469 9470 \N 1579 4 +4736 9471 9472 \N 1579 5 +4737 9473 9474 \N 1579 6 +4738 9475 9476 \N 1580 4 +4739 9477 9478 \N 1580 5 +4740 9479 9480 \N 1580 6 +4741 9481 9482 \N 1581 4 +4742 9483 9484 \N 1581 5 +4743 9485 9486 \N 1581 6 +4744 9487 9488 \N 1582 4 +4745 9489 9490 \N 1582 5 +4746 9491 9492 \N 1582 6 +4747 9493 9494 \N 1583 4 +4748 9495 9496 \N 1583 5 +4749 9497 9498 \N 1583 6 +4750 9499 9500 \N 1584 4 +4751 9501 9502 \N 1584 5 +4752 9503 9504 \N 1584 6 +4753 9505 9506 \N 1585 4 +4754 9507 9508 \N 1585 5 +4755 9509 9510 \N 1585 6 +4756 9511 9512 \N 1586 4 +4757 9513 9514 \N 1586 5 +4758 9515 9516 \N 1586 6 +4759 9517 9518 \N 1587 4 +4760 9519 9520 \N 1587 5 +4761 9521 9522 \N 1587 6 +4762 9523 9524 \N 1588 4 +4763 9525 9526 \N 1588 5 +4764 9527 9528 \N 1588 6 +4765 9529 9530 \N 1589 4 +4766 9531 9532 \N 1589 5 +4767 9533 9534 \N 1589 6 +4768 9535 9536 \N 1590 4 +4769 9537 9538 \N 1590 5 +4770 9539 9540 \N 1590 6 +4771 9541 9542 \N 1591 4 +4772 9543 9544 \N 1591 5 +4773 9545 9546 \N 1591 6 +4774 9547 9548 \N 1592 4 +4775 9549 9550 \N 1592 5 +4776 9551 9552 \N 1592 6 +4777 9553 9554 \N 1593 4 +4778 9555 9556 \N 1593 5 +4779 9557 9558 \N 1593 6 +4780 9559 9560 \N 1594 4 +4781 9561 9562 \N 1594 5 +4782 9563 9564 \N 1594 6 +4783 9565 9566 \N 1595 4 +4784 9567 9568 \N 1595 5 +4785 9569 9570 \N 1595 6 +4786 9571 9572 \N 1596 4 +4787 9573 9574 \N 1596 5 +4788 9575 9576 \N 1596 6 +4789 9577 9578 \N 1597 4 +4790 9579 9580 \N 1597 5 +4791 9581 9582 \N 1597 6 +4792 9583 9584 \N 1598 4 +4793 9585 9586 \N 1598 5 +4794 9587 9588 \N 1598 6 +4795 9589 9590 \N 1599 4 +4796 9591 9592 \N 1599 5 +4797 9593 9594 \N 1599 6 +4798 9595 9596 \N 1600 4 +4799 9597 9598 \N 1600 5 +4800 9599 9600 \N 1600 6 +4801 9601 9602 \N 1601 4 +4802 9603 9604 \N 1601 5 +4803 9605 9606 \N 1601 6 +4804 9607 9608 \N 1602 4 +4805 9609 9610 \N 1602 5 +4806 9611 9612 \N 1602 6 +4807 9613 9614 \N 1603 4 +4808 9615 9616 \N 1603 5 +4809 9617 9618 \N 1603 6 +4810 9619 9620 \N 1604 4 +4811 9621 9622 \N 1604 5 +4812 9623 9624 \N 1604 6 +4813 9625 9626 \N 1605 4 +4814 9627 9628 \N 1605 5 +4815 9629 9630 \N 1605 6 +4816 9631 9632 \N 1606 4 +4817 9633 9634 \N 1606 5 +4818 9635 9636 \N 1606 6 +4819 9637 9638 \N 1607 4 +4820 9639 9640 \N 1607 5 +4821 9641 9642 \N 1607 6 +4822 9643 9644 \N 1608 4 +4823 9645 9646 \N 1608 5 +4824 9647 9648 \N 1608 6 +4825 9649 9650 \N 1609 4 +4826 9651 9652 \N 1609 5 +4827 9653 9654 \N 1609 6 +4828 9655 9656 \N 1610 4 +4829 9657 9658 \N 1610 5 +4830 9659 9660 \N 1610 6 +4831 9661 9662 \N 1611 4 +4832 9663 9664 \N 1611 5 +4833 9665 9666 \N 1611 6 +4834 9667 9668 \N 1612 4 +4835 9669 9670 \N 1612 5 +4836 9671 9672 \N 1612 6 +4837 9673 9674 \N 1613 4 +4838 9675 9676 \N 1613 5 +4839 9677 9678 \N 1613 6 +4840 9679 9680 \N 1614 4 +4841 9681 9682 \N 1614 5 +4842 9683 9684 \N 1614 6 +4843 9685 9686 \N 1615 4 +4844 9687 9688 \N 1615 5 +4845 9689 9690 \N 1615 6 +4846 9691 9692 \N 1616 4 +4847 9693 9694 \N 1616 5 +4848 9695 9696 \N 1616 6 +4849 9697 9698 \N 1617 4 +4850 9699 9700 \N 1617 5 +4851 9701 9702 \N 1617 6 +4852 9703 9704 \N 1618 4 +4853 9705 9706 \N 1618 5 +4854 9707 9708 \N 1618 6 +4855 9709 9710 \N 1619 4 +4856 9711 9712 \N 1619 5 +4857 9713 9714 \N 1619 6 +4858 9715 9716 \N 1620 4 +4859 9717 9718 \N 1620 5 +4860 9719 9720 \N 1620 6 +4861 9721 9722 \N 1621 4 +4862 9723 9724 \N 1621 5 +4863 9725 9726 \N 1621 6 +4864 9727 9728 \N 1622 4 +4865 9729 9730 \N 1622 5 +4866 9731 9732 \N 1622 6 +4867 9733 9734 \N 1623 4 +4868 9735 9736 \N 1623 5 +4869 9737 9738 \N 1623 6 +4870 9739 9740 \N 1624 4 +4871 9741 9742 \N 1624 5 +4872 9743 9744 \N 1624 6 +4873 9745 9746 \N 1625 4 +4874 9747 9748 \N 1625 5 +4875 9749 9750 \N 1625 6 +4876 9751 9752 \N 1626 4 +4877 9753 9754 \N 1626 5 +4878 9755 9756 \N 1626 6 +4879 9757 9758 \N 1627 4 +4880 9759 9760 \N 1627 5 +4881 9761 9762 \N 1627 6 +4882 9763 9764 \N 1628 4 +4883 9765 9766 \N 1628 5 +4884 9767 9768 \N 1628 6 +4885 9769 9770 \N 1629 4 +4886 9771 9772 \N 1629 5 +4887 9773 9774 \N 1629 6 +4888 9775 9776 \N 1630 4 +4889 9777 9778 \N 1630 5 +4890 9779 9780 \N 1630 6 +4891 9781 9782 \N 1631 4 +4892 9783 9784 \N 1631 5 +4893 9785 9786 \N 1631 6 +4894 9787 9788 \N 1632 4 +4895 9789 9790 \N 1632 5 +4896 9791 9792 \N 1632 6 +4897 9793 9794 \N 1633 4 +4898 9795 9796 \N 1633 5 +4899 9797 9798 \N 1633 6 +4900 9799 9800 \N 1634 4 +4901 9801 9802 \N 1634 5 +4902 9803 9804 \N 1634 6 +4903 9805 9806 \N 1635 4 +4904 9807 9808 \N 1635 5 +4905 9809 9810 \N 1635 6 +4906 9811 9812 \N 1636 4 +4907 9813 9814 \N 1636 5 +4908 9815 9816 \N 1636 6 +4909 9817 9818 \N 1637 4 +4910 9819 9820 \N 1637 5 +4911 9821 9822 \N 1637 6 +4912 9823 9824 \N 1638 4 +4913 9825 9826 \N 1638 5 +4914 9827 9828 \N 1638 6 +4915 9829 9830 \N 1639 4 +4916 9831 9832 \N 1639 5 +4917 9833 9834 \N 1639 6 +4918 9835 9836 \N 1640 4 +4919 9837 9838 \N 1640 5 +4920 9839 9840 \N 1640 6 +4921 9841 9842 \N 1641 4 +4922 9843 9844 \N 1641 5 +4923 9845 9846 \N 1641 6 +4924 9847 9848 \N 1642 4 +4925 9849 9850 \N 1642 5 +4926 9851 9852 \N 1642 6 +4927 9853 9854 \N 1643 4 +4928 9855 9856 \N 1643 5 +4929 9857 9858 \N 1643 6 +4930 9859 9860 \N 1644 4 +4931 9861 9862 \N 1644 5 +4932 9863 9864 \N 1644 6 +4933 9865 9866 \N 1645 4 +4934 9867 9868 \N 1645 5 +4935 9869 9870 \N 1645 6 +4936 9871 9872 \N 1646 4 +4937 9873 9874 \N 1646 5 +4938 9875 9876 \N 1646 6 +4939 9877 9878 \N 1647 4 +4940 9879 9880 \N 1647 5 +4941 9881 9882 \N 1647 6 +4942 9883 9884 \N 1648 4 +4943 9885 9886 \N 1648 5 +4944 9887 9888 \N 1648 6 +4945 9889 9890 \N 1649 4 +4946 9891 9892 \N 1649 5 +4947 9893 9894 \N 1649 6 +4948 9895 9896 \N 1650 4 +4949 9897 9898 \N 1650 5 +4950 9899 9900 \N 1650 6 +4951 9901 9902 \N 1651 4 +4952 9903 9904 \N 1651 5 +4953 9905 9906 \N 1651 6 +4954 9907 9908 \N 1652 4 +4955 9909 9910 \N 1652 5 +4956 9911 9912 \N 1652 6 +4957 9913 9914 \N 1653 4 +4958 9915 9916 \N 1653 5 +4959 9917 9918 \N 1653 6 +4960 9919 9920 \N 1654 4 +4961 9921 9922 \N 1654 5 +4962 9923 9924 \N 1654 6 +4963 9925 9926 \N 1655 4 +4964 9927 9928 \N 1655 5 +4965 9929 9930 \N 1655 6 +4966 9931 9932 \N 1656 4 +4967 9933 9934 \N 1656 5 +4968 9935 9936 \N 1656 6 +4969 9937 9938 \N 1657 4 +4970 9939 9940 \N 1657 5 +4971 9941 9942 \N 1657 6 +4972 9943 9944 \N 1658 4 +4973 9945 9946 \N 1658 5 +4974 9947 9948 \N 1658 6 +4975 9949 9950 \N 1659 4 +4976 9951 9952 \N 1659 5 +4977 9953 9954 \N 1659 6 +4978 9955 9956 \N 1660 4 +4979 9957 9958 \N 1660 5 +4980 9959 9960 \N 1660 6 +4981 9961 9962 \N 1661 4 +4982 9963 9964 \N 1661 5 +4983 9965 9966 \N 1661 6 +4984 9967 9968 \N 1662 4 +4985 9969 9970 \N 1662 5 +4986 9971 9972 \N 1662 6 +4987 9973 9974 \N 1663 4 +4988 9975 9976 \N 1663 5 +4989 9977 9978 \N 1663 6 +4990 9979 9980 \N 1664 4 +4991 9981 9982 \N 1664 5 +4992 9983 9984 \N 1664 6 +4993 9985 9986 \N 1665 4 +4994 9987 9988 \N 1665 5 +4995 9989 9990 \N 1665 6 +4996 9991 9992 \N 1666 4 +4997 9993 9994 \N 1666 5 +4998 9995 9996 \N 1666 6 +4999 9997 9998 \N 1667 4 +5000 9999 10000 \N 1667 5 +5001 10001 10002 \N 1667 6 +5002 10003 10004 \N 1668 4 +5003 10005 10006 \N 1668 5 +5004 10007 10008 \N 1668 6 +5005 10009 10010 \N 1669 4 +5006 10011 10012 \N 1669 5 +5007 10013 10014 \N 1669 6 +5008 10015 10016 \N 1670 4 +5009 10017 10018 \N 1670 5 +5010 10019 10020 \N 1670 6 +5011 10021 10022 \N 1671 4 +5012 10023 10024 \N 1671 5 +5013 10025 10026 \N 1671 6 +5014 10027 10028 \N 1672 4 +5015 10029 10030 \N 1672 5 +5016 10031 10032 \N 1672 6 +5017 10033 10034 \N 1673 4 +5018 10035 10036 \N 1673 5 +5019 10037 10038 \N 1673 6 +5020 10039 10040 \N 1674 4 +5021 10041 10042 \N 1674 5 +5022 10043 10044 \N 1674 6 +5023 10045 10046 \N 1675 4 +5024 10047 10048 \N 1675 5 +5025 10049 10050 \N 1675 6 +5026 10051 10052 \N 1676 4 +5027 10053 10054 \N 1676 5 +5028 10055 10056 \N 1676 6 +5029 10057 10058 \N 1677 4 +5030 10059 10060 \N 1677 5 +5031 10061 10062 \N 1677 6 +5032 10063 10064 \N 1678 4 +5033 10065 10066 \N 1678 5 +5034 10067 10068 \N 1678 6 +5035 10069 10070 \N 1679 4 +5036 10071 10072 \N 1679 5 +5037 10073 10074 \N 1679 6 +5038 10075 10076 \N 1680 4 +5039 10077 10078 \N 1680 5 +5040 10079 10080 \N 1680 6 +5041 10081 10082 \N 1681 4 +5042 10083 10084 \N 1681 5 +5043 10085 10086 \N 1681 6 +5044 10087 10088 \N 1682 4 +5045 10089 10090 \N 1682 5 +5046 10091 10092 \N 1682 6 +5047 10093 10094 \N 1683 4 +5048 10095 10096 \N 1683 5 +5049 10097 10098 \N 1683 6 +5050 10099 10100 \N 1684 4 +5051 10101 10102 \N 1684 5 +5052 10103 10104 \N 1684 6 +5053 10105 10106 \N 1685 4 +5054 10107 10108 \N 1685 5 +5055 10109 10110 \N 1685 6 +5056 10111 10112 \N 1686 4 +5057 10113 10114 \N 1686 5 +5058 10115 10116 \N 1686 6 +5059 10117 10118 \N 1687 4 +5060 10119 10120 \N 1687 5 +5061 10121 10122 \N 1687 6 +5062 10123 10124 \N 1688 4 +5063 10125 10126 \N 1688 5 +5064 10127 10128 \N 1688 6 +5065 10129 10130 \N 1689 4 +5066 10131 10132 \N 1689 5 +5067 10133 10134 \N 1689 6 +5068 10135 10136 \N 1690 4 +5069 10137 10138 \N 1690 5 +5070 10139 10140 \N 1690 6 +5071 10141 10142 \N 1691 4 +5072 10143 10144 \N 1691 5 +5073 10145 10146 \N 1691 6 +5074 10147 10148 \N 1692 4 +5075 10149 10150 \N 1692 5 +5076 10151 10152 \N 1692 6 +5077 10153 10154 \N 1693 4 +5078 10155 10156 \N 1693 5 +5079 10157 10158 \N 1693 6 +5080 10159 10160 \N 1694 4 +5081 10161 10162 \N 1694 5 +5082 10163 10164 \N 1694 6 +5083 10165 10166 \N 1695 4 +5084 10167 10168 \N 1695 5 +5085 10169 10170 \N 1695 6 +5086 10171 10172 \N 1696 4 +5087 10173 10174 \N 1696 5 +5088 10175 10176 \N 1696 6 +5089 10177 10178 \N 1697 4 +5090 10179 10180 \N 1697 5 +5091 10181 10182 \N 1697 6 +5092 10183 10184 \N 1698 4 +5093 10185 10186 \N 1698 5 +5094 10187 10188 \N 1698 6 +5095 10189 10190 \N 1699 4 +5096 10191 10192 \N 1699 5 +5097 10193 10194 \N 1699 6 +5098 10195 10196 \N 1700 4 +5099 10197 10198 \N 1700 5 +5100 10199 10200 \N 1700 6 +5101 10201 10202 \N 1701 4 +5102 10203 10204 \N 1701 5 +5103 10205 10206 \N 1701 6 +5104 10207 10208 \N 1702 4 +5105 10209 10210 \N 1702 5 +5106 10211 10212 \N 1702 6 +5107 10213 10214 \N 1703 4 +5108 10215 10216 \N 1703 5 +5109 10217 10218 \N 1703 6 +5110 10219 10220 \N 1704 4 +5111 10221 10222 \N 1704 5 +5112 10223 10224 \N 1704 6 +5113 10225 10226 \N 1705 4 +5114 10227 10228 \N 1705 5 +5115 10229 10230 \N 1705 6 +5116 10231 10232 \N 1706 4 +5117 10233 10234 \N 1706 5 +5118 10235 10236 \N 1706 6 +5119 10237 10238 \N 1707 4 +5120 10239 10240 \N 1707 5 +5121 10241 10242 \N 1707 6 +5122 10243 10244 \N 1708 4 +5123 10245 10246 \N 1708 5 +5124 10247 10248 \N 1708 6 +5125 10249 10250 \N 1709 4 +5126 10251 10252 \N 1709 5 +5127 10253 10254 \N 1709 6 +5128 10255 10256 \N 1710 4 +5129 10257 10258 \N 1710 5 +5130 10259 10260 \N 1710 6 +5131 10261 10262 \N 1711 4 +5132 10263 10264 \N 1711 5 +5133 10265 10266 \N 1711 6 +5134 10267 10268 \N 1712 4 +5135 10269 10270 \N 1712 5 +5136 10271 10272 \N 1712 6 +5137 10273 10274 \N 1713 4 +5138 10275 10276 \N 1713 5 +5139 10277 10278 \N 1713 6 +5140 10279 10280 \N 1714 4 +5141 10281 10282 \N 1714 5 +5142 10283 10284 \N 1714 6 +5143 10285 10286 \N 1715 4 +5144 10287 10288 \N 1715 5 +5145 10289 10290 \N 1715 6 +5146 10291 10292 \N 1716 4 +5147 10293 10294 \N 1716 5 +5148 10295 10296 \N 1716 6 +5149 10297 10298 \N 1717 4 +5150 10299 10300 \N 1717 5 +5151 10301 10302 \N 1717 6 +5152 10303 10304 \N 1718 4 +5153 10305 10306 \N 1718 5 +5154 10307 10308 \N 1718 6 +5155 10309 10310 \N 1719 4 +5156 10311 10312 \N 1719 5 +5157 10313 10314 \N 1719 6 +5158 10315 10316 \N 1720 4 +5159 10317 10318 \N 1720 5 +5160 10319 10320 \N 1720 6 +5161 10321 10322 \N 1721 4 +5162 10323 10324 \N 1721 5 +5163 10325 10326 \N 1721 6 +5164 10327 10328 \N 1722 4 +5165 10329 10330 \N 1722 5 +5166 10331 10332 \N 1722 6 +5167 10333 10334 \N 1723 4 +5168 10335 10336 \N 1723 5 +5169 10337 10338 \N 1723 6 +5170 10339 10340 \N 1724 4 +5171 10341 10342 \N 1724 5 +5172 10343 10344 \N 1724 6 +5173 10345 10346 \N 1725 4 +5174 10347 10348 \N 1725 5 +5175 10349 10350 \N 1725 6 +5176 10351 10352 \N 1726 4 +5177 10353 10354 \N 1726 5 +5178 10355 10356 \N 1726 6 +5179 10357 10358 \N 1727 4 +5180 10359 10360 \N 1727 5 +5181 10361 10362 \N 1727 6 +5182 10363 10364 \N 1728 4 +5183 10365 10366 \N 1728 5 +5184 10367 10368 \N 1728 6 +5185 10369 10370 \N 1729 7 +5186 10371 10372 \N 1729 8 +5187 10373 10374 \N 1729 9 +5188 10375 10376 \N 1730 7 +5189 10377 10378 \N 1730 8 +5190 10379 10380 \N 1730 9 +5191 10381 10382 \N 1731 7 +5192 10383 10384 \N 1731 8 +5193 10385 10386 \N 1731 9 +5194 10387 10388 \N 1732 7 +5195 10389 10390 \N 1732 8 +5196 10391 10392 \N 1732 9 +5197 10393 10394 \N 1733 7 +5198 10395 10396 \N 1733 8 +5199 10397 10398 \N 1733 9 +5200 10399 10400 \N 1734 7 +5201 10401 10402 \N 1734 8 +5202 10403 10404 \N 1734 9 +5203 10405 10406 \N 1735 7 +5204 10407 10408 \N 1735 8 +5205 10409 10410 \N 1735 9 +5206 10411 10412 \N 1736 7 +5207 10413 10414 \N 1736 8 +5208 10415 10416 \N 1736 9 +5209 10417 10418 \N 1737 7 +5210 10419 10420 \N 1737 8 +5211 10421 10422 \N 1737 9 +5212 10423 10424 \N 1738 7 +5213 10425 10426 \N 1738 8 +5214 10427 10428 \N 1738 9 +5215 10429 10430 \N 1739 7 +5216 10431 10432 \N 1739 8 +5217 10433 10434 \N 1739 9 +5218 10435 10436 \N 1740 7 +5219 10437 10438 \N 1740 8 +5220 10439 10440 \N 1740 9 +5221 10441 10442 \N 1741 7 +5222 10443 10444 \N 1741 8 +5223 10445 10446 \N 1741 9 +5224 10447 10448 \N 1742 7 +5225 10449 10450 \N 1742 8 +5226 10451 10452 \N 1742 9 +5227 10453 10454 \N 1743 7 +5228 10455 10456 \N 1743 8 +5229 10457 10458 \N 1743 9 +5230 10459 10460 \N 1744 7 +5231 10461 10462 \N 1744 8 +5232 10463 10464 \N 1744 9 +5233 10465 10466 \N 1745 7 +5234 10467 10468 \N 1745 8 +5235 10469 10470 \N 1745 9 +5236 10471 10472 \N 1746 7 +5237 10473 10474 \N 1746 8 +5238 10475 10476 \N 1746 9 +5239 10477 10478 \N 1747 7 +5240 10479 10480 \N 1747 8 +5241 10481 10482 \N 1747 9 +5242 10483 10484 \N 1748 7 +5243 10485 10486 \N 1748 8 +5244 10487 10488 \N 1748 9 +5245 10489 10490 \N 1749 7 +5246 10491 10492 \N 1749 8 +5247 10493 10494 \N 1749 9 +5248 10495 10496 \N 1750 7 +5249 10497 10498 \N 1750 8 +5250 10499 10500 \N 1750 9 +5251 10501 10502 \N 1751 7 +5252 10503 10504 \N 1751 8 +5253 10505 10506 \N 1751 9 +5254 10507 10508 \N 1752 7 +5255 10509 10510 \N 1752 8 +5256 10511 10512 \N 1752 9 +5257 10513 10514 \N 1753 7 +5258 10515 10516 \N 1753 8 +5259 10517 10518 \N 1753 9 +5260 10519 10520 \N 1754 7 +5261 10521 10522 \N 1754 8 +5262 10523 10524 \N 1754 9 +5263 10525 10526 \N 1755 7 +5264 10527 10528 \N 1755 8 +5265 10529 10530 \N 1755 9 +5266 10531 10532 \N 1756 7 +5267 10533 10534 \N 1756 8 +5268 10535 10536 \N 1756 9 +5269 10537 10538 \N 1757 7 +5270 10539 10540 \N 1757 8 +5271 10541 10542 \N 1757 9 +5272 10543 10544 \N 1758 7 +5273 10545 10546 \N 1758 8 +5274 10547 10548 \N 1758 9 +5275 10549 10550 \N 1759 7 +5276 10551 10552 \N 1759 8 +5277 10553 10554 \N 1759 9 +5278 10555 10556 \N 1760 7 +5279 10557 10558 \N 1760 8 +5280 10559 10560 \N 1760 9 +5281 10561 10562 \N 1761 7 +5282 10563 10564 \N 1761 8 +5283 10565 10566 \N 1761 9 +5284 10567 10568 \N 1762 7 +5285 10569 10570 \N 1762 8 +5286 10571 10572 \N 1762 9 +5287 10573 10574 \N 1763 7 +5288 10575 10576 \N 1763 8 +5289 10577 10578 \N 1763 9 +5290 10579 10580 \N 1764 7 +5291 10581 10582 \N 1764 8 +5292 10583 10584 \N 1764 9 +5293 10585 10586 \N 1765 7 +5294 10587 10588 \N 1765 8 +5295 10589 10590 \N 1765 9 +5296 10591 10592 \N 1766 7 +5297 10593 10594 \N 1766 8 +5298 10595 10596 \N 1766 9 +5299 10597 10598 \N 1767 7 +5300 10599 10600 \N 1767 8 +5301 10601 10602 \N 1767 9 +5302 10603 10604 \N 1768 7 +5303 10605 10606 \N 1768 8 +5304 10607 10608 \N 1768 9 +5305 10609 10610 \N 1769 7 +5306 10611 10612 \N 1769 8 +5307 10613 10614 \N 1769 9 +5308 10615 10616 \N 1770 7 +5309 10617 10618 \N 1770 8 +5310 10619 10620 \N 1770 9 +5311 10621 10622 \N 1771 7 +5312 10623 10624 \N 1771 8 +5313 10625 10626 \N 1771 9 +5314 10627 10628 \N 1772 7 +5315 10629 10630 \N 1772 8 +5316 10631 10632 \N 1772 9 +5317 10633 10634 \N 1773 7 +5318 10635 10636 \N 1773 8 +5319 10637 10638 \N 1773 9 +5320 10639 10640 \N 1774 7 +5321 10641 10642 \N 1774 8 +5322 10643 10644 \N 1774 9 +5323 10645 10646 \N 1775 7 +5324 10647 10648 \N 1775 8 +5325 10649 10650 \N 1775 9 +5326 10651 10652 \N 1776 7 +5327 10653 10654 \N 1776 8 +5328 10655 10656 \N 1776 9 +5329 10657 10658 \N 1777 7 +5330 10659 10660 \N 1777 8 +5331 10661 10662 \N 1777 9 +5332 10663 10664 \N 1778 7 +5333 10665 10666 \N 1778 8 +5334 10667 10668 \N 1778 9 +5335 10669 10670 \N 1779 7 +5336 10671 10672 \N 1779 8 +5337 10673 10674 \N 1779 9 +5338 10675 10676 \N 1780 7 +5339 10677 10678 \N 1780 8 +5340 10679 10680 \N 1780 9 +5341 10681 10682 \N 1781 7 +5342 10683 10684 \N 1781 8 +5343 10685 10686 \N 1781 9 +5344 10687 10688 \N 1782 7 +5345 10689 10690 \N 1782 8 +5346 10691 10692 \N 1782 9 +5347 10693 10694 \N 1783 7 +5348 10695 10696 \N 1783 8 +5349 10697 10698 \N 1783 9 +5350 10699 10700 \N 1784 7 +5351 10701 10702 \N 1784 8 +5352 10703 10704 \N 1784 9 +5353 10705 10706 \N 1785 7 +5354 10707 10708 \N 1785 8 +5355 10709 10710 \N 1785 9 +5356 10711 10712 \N 1786 7 +5357 10713 10714 \N 1786 8 +5358 10715 10716 \N 1786 9 +5359 10717 10718 \N 1787 7 +5360 10719 10720 \N 1787 8 +5361 10721 10722 \N 1787 9 +5362 10723 10724 \N 1788 7 +5363 10725 10726 \N 1788 8 +5364 10727 10728 \N 1788 9 +5365 10729 10730 \N 1789 7 +5366 10731 10732 \N 1789 8 +5367 10733 10734 \N 1789 9 +5368 10735 10736 \N 1790 7 +5369 10737 10738 \N 1790 8 +5370 10739 10740 \N 1790 9 +5371 10741 10742 \N 1791 7 +5372 10743 10744 \N 1791 8 +5373 10745 10746 \N 1791 9 +5374 10747 10748 \N 1792 7 +5375 10749 10750 \N 1792 8 +5376 10751 10752 \N 1792 9 +5377 10753 10754 \N 1793 7 +5378 10755 10756 \N 1793 8 +5379 10757 10758 \N 1793 9 +5380 10759 10760 \N 1794 7 +5381 10761 10762 \N 1794 8 +5382 10763 10764 \N 1794 9 +5383 10765 10766 \N 1795 7 +5384 10767 10768 \N 1795 8 +5385 10769 10770 \N 1795 9 +5386 10771 10772 \N 1796 7 +5387 10773 10774 \N 1796 8 +5388 10775 10776 \N 1796 9 +5389 10777 10778 \N 1797 7 +5390 10779 10780 \N 1797 8 +5391 10781 10782 \N 1797 9 +5392 10783 10784 \N 1798 7 +5393 10785 10786 \N 1798 8 +5394 10787 10788 \N 1798 9 +5395 10789 10790 \N 1799 7 +5396 10791 10792 \N 1799 8 +5397 10793 10794 \N 1799 9 +5398 10795 10796 \N 1800 7 +5399 10797 10798 \N 1800 8 +5400 10799 10800 \N 1800 9 +5401 10801 10802 \N 1801 7 +5402 10803 10804 \N 1801 8 +5403 10805 10806 \N 1801 9 +5404 10807 10808 \N 1802 7 +5405 10809 10810 \N 1802 8 +5406 10811 10812 \N 1802 9 +5407 10813 10814 \N 1803 7 +5408 10815 10816 \N 1803 8 +5409 10817 10818 \N 1803 9 +5410 10819 10820 \N 1804 7 +5411 10821 10822 \N 1804 8 +5412 10823 10824 \N 1804 9 +5413 10825 10826 \N 1805 7 +5414 10827 10828 \N 1805 8 +5415 10829 10830 \N 1805 9 +5416 10831 10832 \N 1806 7 +5417 10833 10834 \N 1806 8 +5418 10835 10836 \N 1806 9 +5419 10837 10838 \N 1807 7 +5420 10839 10840 \N 1807 8 +5421 10841 10842 \N 1807 9 +5422 10843 10844 \N 1808 7 +5423 10845 10846 \N 1808 8 +5424 10847 10848 \N 1808 9 +5425 10849 10850 \N 1809 7 +5426 10851 10852 \N 1809 8 +5427 10853 10854 \N 1809 9 +5428 10855 10856 \N 1810 7 +5429 10857 10858 \N 1810 8 +5430 10859 10860 \N 1810 9 +5431 10861 10862 \N 1811 7 +5432 10863 10864 \N 1811 8 +5433 10865 10866 \N 1811 9 +5434 10867 10868 \N 1812 7 +5435 10869 10870 \N 1812 8 +5436 10871 10872 \N 1812 9 +5437 10873 10874 \N 1813 7 +5438 10875 10876 \N 1813 8 +5439 10877 10878 \N 1813 9 +5440 10879 10880 \N 1814 7 +5441 10881 10882 \N 1814 8 +5442 10883 10884 \N 1814 9 +5443 10885 10886 \N 1815 7 +5444 10887 10888 \N 1815 8 +5445 10889 10890 \N 1815 9 +5446 10891 10892 \N 1816 7 +5447 10893 10894 \N 1816 8 +5448 10895 10896 \N 1816 9 +5449 10897 10898 \N 1817 7 +5450 10899 10900 \N 1817 8 +5451 10901 10902 \N 1817 9 +5452 10903 10904 \N 1818 7 +5453 10905 10906 \N 1818 8 +5454 10907 10908 \N 1818 9 +5455 10909 10910 \N 1819 7 +5456 10911 10912 \N 1819 8 +5457 10913 10914 \N 1819 9 +5458 10915 10916 \N 1820 7 +5459 10917 10918 \N 1820 8 +5460 10919 10920 \N 1820 9 +5461 10921 10922 \N 1821 7 +5462 10923 10924 \N 1821 8 +5463 10925 10926 \N 1821 9 +5464 10927 10928 \N 1822 7 +5465 10929 10930 \N 1822 8 +5466 10931 10932 \N 1822 9 +5467 10933 10934 \N 1823 7 +5468 10935 10936 \N 1823 8 +5469 10937 10938 \N 1823 9 +5470 10939 10940 \N 1824 7 +5471 10941 10942 \N 1824 8 +5472 10943 10944 \N 1824 9 +5473 10945 10946 \N 1825 7 +5474 10947 10948 \N 1825 8 +5475 10949 10950 \N 1825 9 +5476 10951 10952 \N 1826 7 +5477 10953 10954 \N 1826 8 +5478 10955 10956 \N 1826 9 +5479 10957 10958 \N 1827 7 +5480 10959 10960 \N 1827 8 +5481 10961 10962 \N 1827 9 +5482 10963 10964 \N 1828 7 +5483 10965 10966 \N 1828 8 +5484 10967 10968 \N 1828 9 +5485 10969 10970 \N 1829 7 +5486 10971 10972 \N 1829 8 +5487 10973 10974 \N 1829 9 +5488 10975 10976 \N 1830 7 +5489 10977 10978 \N 1830 8 +5490 10979 10980 \N 1830 9 +5491 10981 10982 \N 1831 7 +5492 10983 10984 \N 1831 8 +5493 10985 10986 \N 1831 9 +5494 10987 10988 \N 1832 7 +5495 10989 10990 \N 1832 8 +5496 10991 10992 \N 1832 9 +5497 10993 10994 \N 1833 7 +5498 10995 10996 \N 1833 8 +5499 10997 10998 \N 1833 9 +5500 10999 11000 \N 1834 7 +5501 11001 11002 \N 1834 8 +5502 11003 11004 \N 1834 9 +5503 11005 11006 \N 1835 7 +5504 11007 11008 \N 1835 8 +5505 11009 11010 \N 1835 9 +5506 11011 11012 \N 1836 7 +5507 11013 11014 \N 1836 8 +5508 11015 11016 \N 1836 9 +5509 11017 11018 \N 1837 7 +5510 11019 11020 \N 1837 8 +5511 11021 11022 \N 1837 9 +5512 11023 11024 \N 1838 7 +5513 11025 11026 \N 1838 8 +5514 11027 11028 \N 1838 9 +5515 11029 11030 \N 1839 7 +5516 11031 11032 \N 1839 8 +5517 11033 11034 \N 1839 9 +5518 11035 11036 \N 1840 7 +5519 11037 11038 \N 1840 8 +5520 11039 11040 \N 1840 9 +5521 11041 11042 \N 1841 7 +5522 11043 11044 \N 1841 8 +5523 11045 11046 \N 1841 9 +5524 11047 11048 \N 1842 7 +5525 11049 11050 \N 1842 8 +5526 11051 11052 \N 1842 9 +5527 11053 11054 \N 1843 7 +5528 11055 11056 \N 1843 8 +5529 11057 11058 \N 1843 9 +5530 11059 11060 \N 1844 7 +5531 11061 11062 \N 1844 8 +5532 11063 11064 \N 1844 9 +5533 11065 11066 \N 1845 7 +5534 11067 11068 \N 1845 8 +5535 11069 11070 \N 1845 9 +5536 11071 11072 \N 1846 7 +5537 11073 11074 \N 1846 8 +5538 11075 11076 \N 1846 9 +5539 11077 11078 \N 1847 7 +5540 11079 11080 \N 1847 8 +5541 11081 11082 \N 1847 9 +5542 11083 11084 \N 1848 7 +5543 11085 11086 \N 1848 8 +5544 11087 11088 \N 1848 9 +5545 11089 11090 \N 1849 7 +5546 11091 11092 \N 1849 8 +5547 11093 11094 \N 1849 9 +5548 11095 11096 \N 1850 7 +5549 11097 11098 \N 1850 8 +5550 11099 11100 \N 1850 9 +5551 11101 11102 \N 1851 7 +5552 11103 11104 \N 1851 8 +5553 11105 11106 \N 1851 9 +5554 11107 11108 \N 1852 7 +5555 11109 11110 \N 1852 8 +5556 11111 11112 \N 1852 9 +5557 11113 11114 \N 1853 7 +5558 11115 11116 \N 1853 8 +5559 11117 11118 \N 1853 9 +5560 11119 11120 \N 1854 7 +5561 11121 11122 \N 1854 8 +5562 11123 11124 \N 1854 9 +5563 11125 11126 \N 1855 7 +5564 11127 11128 \N 1855 8 +5565 11129 11130 \N 1855 9 +5566 11131 11132 \N 1856 7 +5567 11133 11134 \N 1856 8 +5568 11135 11136 \N 1856 9 +5569 11137 11138 \N 1857 7 +5570 11139 11140 \N 1857 8 +5571 11141 11142 \N 1857 9 +5572 11143 11144 \N 1858 7 +5573 11145 11146 \N 1858 8 +5574 11147 11148 \N 1858 9 +5575 11149 11150 \N 1859 7 +5576 11151 11152 \N 1859 8 +5577 11153 11154 \N 1859 9 +5578 11155 11156 \N 1860 7 +5579 11157 11158 \N 1860 8 +5580 11159 11160 \N 1860 9 +5581 11161 11162 \N 1861 7 +5582 11163 11164 \N 1861 8 +5583 11165 11166 \N 1861 9 +5584 11167 11168 \N 1862 7 +5585 11169 11170 \N 1862 8 +5586 11171 11172 \N 1862 9 +5587 11173 11174 \N 1863 7 +5588 11175 11176 \N 1863 8 +5589 11177 11178 \N 1863 9 +5590 11179 11180 \N 1864 7 +5591 11181 11182 \N 1864 8 +5592 11183 11184 \N 1864 9 +5593 11185 11186 \N 1865 7 +5594 11187 11188 \N 1865 8 +5595 11189 11190 \N 1865 9 +5596 11191 11192 \N 1866 7 +5597 11193 11194 \N 1866 8 +5598 11195 11196 \N 1866 9 +5599 11197 11198 \N 1867 7 +5600 11199 11200 \N 1867 8 +5601 11201 11202 \N 1867 9 +5602 11203 11204 \N 1868 7 +5603 11205 11206 \N 1868 8 +5604 11207 11208 \N 1868 9 +5605 11209 11210 \N 1869 7 +5606 11211 11212 \N 1869 8 +5607 11213 11214 \N 1869 9 +5608 11215 11216 \N 1870 7 +5609 11217 11218 \N 1870 8 +5610 11219 11220 \N 1870 9 +5611 11221 11222 \N 1871 7 +5612 11223 11224 \N 1871 8 +5613 11225 11226 \N 1871 9 +5614 11227 11228 \N 1872 7 +5615 11229 11230 \N 1872 8 +5616 11231 11232 \N 1872 9 +5617 11233 11234 \N 1873 7 +5618 11235 11236 \N 1873 8 +5619 11237 11238 \N 1873 9 +5620 11239 11240 \N 1874 7 +5621 11241 11242 \N 1874 8 +5622 11243 11244 \N 1874 9 +5623 11245 11246 \N 1875 7 +5624 11247 11248 \N 1875 8 +5625 11249 11250 \N 1875 9 +5626 11251 11252 \N 1876 7 +5627 11253 11254 \N 1876 8 +5628 11255 11256 \N 1876 9 +5629 11257 11258 \N 1877 7 +5630 11259 11260 \N 1877 8 +5631 11261 11262 \N 1877 9 +5632 11263 11264 \N 1878 7 +5633 11265 11266 \N 1878 8 +5634 11267 11268 \N 1878 9 +5635 11269 11270 \N 1879 7 +5636 11271 11272 \N 1879 8 +5637 11273 11274 \N 1879 9 +5638 11275 11276 \N 1880 7 +5639 11277 11278 \N 1880 8 +5640 11279 11280 \N 1880 9 +5641 11281 11282 \N 1881 7 +5642 11283 11284 \N 1881 8 +5643 11285 11286 \N 1881 9 +5644 11287 11288 \N 1882 7 +5645 11289 11290 \N 1882 8 +5646 11291 11292 \N 1882 9 +5647 11293 11294 \N 1883 7 +5648 11295 11296 \N 1883 8 +5649 11297 11298 \N 1883 9 +5650 11299 11300 \N 1884 7 +5651 11301 11302 \N 1884 8 +5652 11303 11304 \N 1884 9 +5653 11305 11306 \N 1885 7 +5654 11307 11308 \N 1885 8 +5655 11309 11310 \N 1885 9 +5656 11311 11312 \N 1886 7 +5657 11313 11314 \N 1886 8 +5658 11315 11316 \N 1886 9 +5659 11317 11318 \N 1887 7 +5660 11319 11320 \N 1887 8 +5661 11321 11322 \N 1887 9 +5662 11323 11324 \N 1888 7 +5663 11325 11326 \N 1888 8 +5664 11327 11328 \N 1888 9 +5665 11329 11330 \N 1889 7 +5666 11331 11332 \N 1889 8 +5667 11333 11334 \N 1889 9 +5668 11335 11336 \N 1890 7 +5669 11337 11338 \N 1890 8 +5670 11339 11340 \N 1890 9 +5671 11341 11342 \N 1891 7 +5672 11343 11344 \N 1891 8 +5673 11345 11346 \N 1891 9 +5674 11347 11348 \N 1892 7 +5675 11349 11350 \N 1892 8 +5676 11351 11352 \N 1892 9 +5677 11353 11354 \N 1893 7 +5678 11355 11356 \N 1893 8 +5679 11357 11358 \N 1893 9 +5680 11359 11360 \N 1894 7 +5681 11361 11362 \N 1894 8 +5682 11363 11364 \N 1894 9 +5683 11365 11366 \N 1895 7 +5684 11367 11368 \N 1895 8 +5685 11369 11370 \N 1895 9 +5686 11371 11372 \N 1896 7 +5687 11373 11374 \N 1896 8 +5688 11375 11376 \N 1896 9 +5689 11377 11378 \N 1897 7 +5690 11379 11380 \N 1897 8 +5691 11381 11382 \N 1897 9 +5692 11383 11384 \N 1898 7 +5693 11385 11386 \N 1898 8 +5694 11387 11388 \N 1898 9 +5695 11389 11390 \N 1899 7 +5696 11391 11392 \N 1899 8 +5697 11393 11394 \N 1899 9 +5698 11395 11396 \N 1900 7 +5699 11397 11398 \N 1900 8 +5700 11399 11400 \N 1900 9 +5701 11401 11402 \N 1901 7 +5702 11403 11404 \N 1901 8 +5703 11405 11406 \N 1901 9 +5704 11407 11408 \N 1902 7 +5705 11409 11410 \N 1902 8 +5706 11411 11412 \N 1902 9 +5707 11413 11414 \N 1903 7 +5708 11415 11416 \N 1903 8 +5709 11417 11418 \N 1903 9 +5710 11419 11420 \N 1904 7 +5711 11421 11422 \N 1904 8 +5712 11423 11424 \N 1904 9 +5713 11425 11426 \N 1905 7 +5714 11427 11428 \N 1905 8 +5715 11429 11430 \N 1905 9 +5716 11431 11432 \N 1906 7 +5717 11433 11434 \N 1906 8 +5718 11435 11436 \N 1906 9 +5719 11437 11438 \N 1907 7 +5720 11439 11440 \N 1907 8 +5721 11441 11442 \N 1907 9 +5722 11443 11444 \N 1908 7 +5723 11445 11446 \N 1908 8 +5724 11447 11448 \N 1908 9 +5725 11449 11450 \N 1909 7 +5726 11451 11452 \N 1909 8 +5727 11453 11454 \N 1909 9 +5728 11455 11456 \N 1910 7 +5729 11457 11458 \N 1910 8 +5730 11459 11460 \N 1910 9 +5731 11461 11462 \N 1911 7 +5732 11463 11464 \N 1911 8 +5733 11465 11466 \N 1911 9 +5734 11467 11468 \N 1912 7 +5735 11469 11470 \N 1912 8 +5736 11471 11472 \N 1912 9 +5737 11473 11474 \N 1913 7 +5738 11475 11476 \N 1913 8 +5739 11477 11478 \N 1913 9 +5740 11479 11480 \N 1914 7 +5741 11481 11482 \N 1914 8 +5742 11483 11484 \N 1914 9 +5743 11485 11486 \N 1915 7 +5744 11487 11488 \N 1915 8 +5745 11489 11490 \N 1915 9 +5746 11491 11492 \N 1916 7 +5747 11493 11494 \N 1916 8 +5748 11495 11496 \N 1916 9 +5749 11497 11498 \N 1917 7 +5750 11499 11500 \N 1917 8 +5751 11501 11502 \N 1917 9 +5752 11503 11504 \N 1918 7 +5753 11505 11506 \N 1918 8 +5754 11507 11508 \N 1918 9 +5755 11509 11510 \N 1919 7 +5756 11511 11512 \N 1919 8 +5757 11513 11514 \N 1919 9 +5758 11515 11516 \N 1920 7 +5759 11517 11518 \N 1920 8 +5760 11519 11520 \N 1920 9 +5761 11521 11522 \N 1921 7 +5762 11523 11524 \N 1921 8 +5763 11525 11526 \N 1921 9 +5764 11527 11528 \N 1922 7 +5765 11529 11530 \N 1922 8 +5766 11531 11532 \N 1922 9 +5767 11533 11534 \N 1923 7 +5768 11535 11536 \N 1923 8 +5769 11537 11538 \N 1923 9 +5770 11539 11540 \N 1924 7 +5771 11541 11542 \N 1924 8 +5772 11543 11544 \N 1924 9 +5773 11545 11546 \N 1925 7 +5774 11547 11548 \N 1925 8 +5775 11549 11550 \N 1925 9 +5776 11551 11552 \N 1926 7 +5777 11553 11554 \N 1926 8 +5778 11555 11556 \N 1926 9 +5779 11557 11558 \N 1927 7 +5780 11559 11560 \N 1927 8 +5781 11561 11562 \N 1927 9 +5782 11563 11564 \N 1928 7 +5783 11565 11566 \N 1928 8 +5784 11567 11568 \N 1928 9 +5785 11569 11570 \N 1929 7 +5786 11571 11572 \N 1929 8 +5787 11573 11574 \N 1929 9 +5788 11575 11576 \N 1930 7 +5789 11577 11578 \N 1930 8 +5790 11579 11580 \N 1930 9 +5791 11581 11582 \N 1931 7 +5792 11583 11584 \N 1931 8 +5793 11585 11586 \N 1931 9 +5794 11587 11588 \N 1932 7 +5795 11589 11590 \N 1932 8 +5796 11591 11592 \N 1932 9 +5797 11593 11594 \N 1933 7 +5798 11595 11596 \N 1933 8 +5799 11597 11598 \N 1933 9 +5800 11599 11600 \N 1934 7 +5801 11601 11602 \N 1934 8 +5802 11603 11604 \N 1934 9 +5803 11605 11606 \N 1935 7 +5804 11607 11608 \N 1935 8 +5805 11609 11610 \N 1935 9 +5806 11611 11612 \N 1936 7 +5807 11613 11614 \N 1936 8 +5808 11615 11616 \N 1936 9 +5809 11617 11618 \N 1937 7 +5810 11619 11620 \N 1937 8 +5811 11621 11622 \N 1937 9 +5812 11623 11624 \N 1938 7 +5813 11625 11626 \N 1938 8 +5814 11627 11628 \N 1938 9 +5815 11629 11630 \N 1939 7 +5816 11631 11632 \N 1939 8 +5817 11633 11634 \N 1939 9 +5818 11635 11636 \N 1940 7 +5819 11637 11638 \N 1940 8 +5820 11639 11640 \N 1940 9 +5821 11641 11642 \N 1941 7 +5822 11643 11644 \N 1941 8 +5823 11645 11646 \N 1941 9 +5824 11647 11648 \N 1942 7 +5825 11649 11650 \N 1942 8 +5826 11651 11652 \N 1942 9 +5827 11653 11654 \N 1943 7 +5828 11655 11656 \N 1943 8 +5829 11657 11658 \N 1943 9 +5830 11659 11660 \N 1944 7 +5831 11661 11662 \N 1944 8 +5832 11663 11664 \N 1944 9 +5833 11665 11666 \N 1945 7 +5834 11667 11668 \N 1945 8 +5835 11669 11670 \N 1945 9 +5836 11671 11672 \N 1946 7 +5837 11673 11674 \N 1946 8 +5838 11675 11676 \N 1946 9 +5839 11677 11678 \N 1947 7 +5840 11679 11680 \N 1947 8 +5841 11681 11682 \N 1947 9 +5842 11683 11684 \N 1948 7 +5843 11685 11686 \N 1948 8 +5844 11687 11688 \N 1948 9 +5845 11689 11690 \N 1949 7 +5846 11691 11692 \N 1949 8 +5847 11693 11694 \N 1949 9 +5848 11695 11696 \N 1950 7 +5849 11697 11698 \N 1950 8 +5850 11699 11700 \N 1950 9 +5851 11701 11702 \N 1951 7 +5852 11703 11704 \N 1951 8 +5853 11705 11706 \N 1951 9 +5854 11707 11708 \N 1952 7 +5855 11709 11710 \N 1952 8 +5856 11711 11712 \N 1952 9 +5857 11713 11714 \N 1953 7 +5858 11715 11716 \N 1953 8 +5859 11717 11718 \N 1953 9 +5860 11719 11720 \N 1954 7 +5861 11721 11722 \N 1954 8 +5862 11723 11724 \N 1954 9 +5863 11725 11726 \N 1955 7 +5864 11727 11728 \N 1955 8 +5865 11729 11730 \N 1955 9 +5866 11731 11732 \N 1956 7 +5867 11733 11734 \N 1956 8 +5868 11735 11736 \N 1956 9 +5869 11737 11738 \N 1957 7 +5870 11739 11740 \N 1957 8 +5871 11741 11742 \N 1957 9 +5872 11743 11744 \N 1958 7 +5873 11745 11746 \N 1958 8 +5874 11747 11748 \N 1958 9 +5875 11749 11750 \N 1959 7 +5876 11751 11752 \N 1959 8 +5877 11753 11754 \N 1959 9 +5878 11755 11756 \N 1960 7 +5879 11757 11758 \N 1960 8 +5880 11759 11760 \N 1960 9 +5881 11761 11762 \N 1961 7 +5882 11763 11764 \N 1961 8 +5883 11765 11766 \N 1961 9 +5884 11767 11768 \N 1962 7 +5885 11769 11770 \N 1962 8 +5886 11771 11772 \N 1962 9 +5887 11773 11774 \N 1963 7 +5888 11775 11776 \N 1963 8 +5889 11777 11778 \N 1963 9 +5890 11779 11780 \N 1964 7 +5891 11781 11782 \N 1964 8 +5892 11783 11784 \N 1964 9 +5893 11785 11786 \N 1965 7 +5894 11787 11788 \N 1965 8 +5895 11789 11790 \N 1965 9 +5896 11791 11792 \N 1966 7 +5897 11793 11794 \N 1966 8 +5898 11795 11796 \N 1966 9 +5899 11797 11798 \N 1967 7 +5900 11799 11800 \N 1967 8 +5901 11801 11802 \N 1967 9 +5902 11803 11804 \N 1968 7 +5903 11805 11806 \N 1968 8 +5904 11807 11808 \N 1968 9 +5905 11809 11810 \N 1969 7 +5906 11811 11812 \N 1969 8 +5907 11813 11814 \N 1969 9 +5908 11815 11816 \N 1970 7 +5909 11817 11818 \N 1970 8 +5910 11819 11820 \N 1970 9 +5911 11821 11822 \N 1971 7 +5912 11823 11824 \N 1971 8 +5913 11825 11826 \N 1971 9 +5914 11827 11828 \N 1972 7 +5915 11829 11830 \N 1972 8 +5916 11831 11832 \N 1972 9 +5917 11833 11834 \N 1973 7 +5918 11835 11836 \N 1973 8 +5919 11837 11838 \N 1973 9 +5920 11839 11840 \N 1974 7 +5921 11841 11842 \N 1974 8 +5922 11843 11844 \N 1974 9 +5923 11845 11846 \N 1975 7 +5924 11847 11848 \N 1975 8 +5925 11849 11850 \N 1975 9 +5926 11851 11852 \N 1976 7 +5927 11853 11854 \N 1976 8 +5928 11855 11856 \N 1976 9 +5929 11857 11858 \N 1977 7 +5930 11859 11860 \N 1977 8 +5931 11861 11862 \N 1977 9 +5932 11863 11864 \N 1978 7 +5933 11865 11866 \N 1978 8 +5934 11867 11868 \N 1978 9 +5935 11869 11870 \N 1979 7 +5936 11871 11872 \N 1979 8 +5937 11873 11874 \N 1979 9 +5938 11875 11876 \N 1980 7 +5939 11877 11878 \N 1980 8 +5940 11879 11880 \N 1980 9 +5941 11881 11882 \N 1981 7 +5942 11883 11884 \N 1981 8 +5943 11885 11886 \N 1981 9 +5944 11887 11888 \N 1982 7 +5945 11889 11890 \N 1982 8 +5946 11891 11892 \N 1982 9 +5947 11893 11894 \N 1983 7 +5948 11895 11896 \N 1983 8 +5949 11897 11898 \N 1983 9 +5950 11899 11900 \N 1984 7 +5951 11901 11902 \N 1984 8 +5952 11903 11904 \N 1984 9 +5953 11905 11906 \N 1985 7 +5954 11907 11908 \N 1985 8 +5955 11909 11910 \N 1985 9 +5956 11911 11912 \N 1986 7 +5957 11913 11914 \N 1986 8 +5958 11915 11916 \N 1986 9 +5959 11917 11918 \N 1987 7 +5960 11919 11920 \N 1987 8 +5961 11921 11922 \N 1987 9 +5962 11923 11924 \N 1988 7 +5963 11925 11926 \N 1988 8 +5964 11927 11928 \N 1988 9 +5965 11929 11930 \N 1989 7 +5966 11931 11932 \N 1989 8 +5967 11933 11934 \N 1989 9 +5968 11935 11936 \N 1990 7 +5969 11937 11938 \N 1990 8 +5970 11939 11940 \N 1990 9 +5971 11941 11942 \N 1991 7 +5972 11943 11944 \N 1991 8 +5973 11945 11946 \N 1991 9 +5974 11947 11948 \N 1992 7 +5975 11949 11950 \N 1992 8 +5976 11951 11952 \N 1992 9 +5977 11953 11954 \N 1993 7 +5978 11955 11956 \N 1993 8 +5979 11957 11958 \N 1993 9 +5980 11959 11960 \N 1994 7 +5981 11961 11962 \N 1994 8 +5982 11963 11964 \N 1994 9 +5983 11965 11966 \N 1995 7 +5984 11967 11968 \N 1995 8 +5985 11969 11970 \N 1995 9 +5986 11971 11972 \N 1996 7 +5987 11973 11974 \N 1996 8 +5988 11975 11976 \N 1996 9 +5989 11977 11978 \N 1997 7 +5990 11979 11980 \N 1997 8 +5991 11981 11982 \N 1997 9 +5992 11983 11984 \N 1998 7 +5993 11985 11986 \N 1998 8 +5994 11987 11988 \N 1998 9 +5995 11989 11990 \N 1999 7 +5996 11991 11992 \N 1999 8 +5997 11993 11994 \N 1999 9 +5998 11995 11996 \N 2000 7 +5999 11997 11998 \N 2000 8 +6000 11999 12000 \N 2000 9 +6001 12001 12002 \N 2001 7 +6002 12003 12004 \N 2001 8 +6003 12005 12006 \N 2001 9 +6004 12007 12008 \N 2002 7 +6005 12009 12010 \N 2002 8 +6006 12011 12012 \N 2002 9 +6007 12013 12014 \N 2003 7 +6008 12015 12016 \N 2003 8 +6009 12017 12018 \N 2003 9 +6010 12019 12020 \N 2004 7 +6011 12021 12022 \N 2004 8 +6012 12023 12024 \N 2004 9 +6013 12025 12026 \N 2005 7 +6014 12027 12028 \N 2005 8 +6015 12029 12030 \N 2005 9 +6016 12031 12032 \N 2006 7 +6017 12033 12034 \N 2006 8 +6018 12035 12036 \N 2006 9 +6019 12037 12038 \N 2007 7 +6020 12039 12040 \N 2007 8 +6021 12041 12042 \N 2007 9 +6022 12043 12044 \N 2008 7 +6023 12045 12046 \N 2008 8 +6024 12047 12048 \N 2008 9 +6025 12049 12050 \N 2009 7 +6026 12051 12052 \N 2009 8 +6027 12053 12054 \N 2009 9 +6028 12055 12056 \N 2010 7 +6029 12057 12058 \N 2010 8 +6030 12059 12060 \N 2010 9 +6031 12061 12062 \N 2011 7 +6032 12063 12064 \N 2011 8 +6033 12065 12066 \N 2011 9 +6034 12067 12068 \N 2012 7 +6035 12069 12070 \N 2012 8 +6036 12071 12072 \N 2012 9 +6037 12073 12074 \N 2013 7 +6038 12075 12076 \N 2013 8 +6039 12077 12078 \N 2013 9 +6040 12079 12080 \N 2014 7 +6041 12081 12082 \N 2014 8 +6042 12083 12084 \N 2014 9 +6043 12085 12086 \N 2015 7 +6044 12087 12088 \N 2015 8 +6045 12089 12090 \N 2015 9 +6046 12091 12092 \N 2016 7 +6047 12093 12094 \N 2016 8 +6048 12095 12096 \N 2016 9 +6049 12097 12098 \N 2017 7 +6050 12099 12100 \N 2017 8 +6051 12101 12102 \N 2017 9 +6052 12103 12104 \N 2018 7 +6053 12105 12106 \N 2018 8 +6054 12107 12108 \N 2018 9 +6055 12109 12110 \N 2019 7 +6056 12111 12112 \N 2019 8 +6057 12113 12114 \N 2019 9 +6058 12115 12116 \N 2020 7 +6059 12117 12118 \N 2020 8 +6060 12119 12120 \N 2020 9 +6061 12121 12122 \N 2021 7 +6062 12123 12124 \N 2021 8 +6063 12125 12126 \N 2021 9 +6064 12127 12128 \N 2022 7 +6065 12129 12130 \N 2022 8 +6066 12131 12132 \N 2022 9 +6067 12133 12134 \N 2023 7 +6068 12135 12136 \N 2023 8 +6069 12137 12138 \N 2023 9 +6070 12139 12140 \N 2024 7 +6071 12141 12142 \N 2024 8 +6072 12143 12144 \N 2024 9 +6073 12145 12146 \N 2025 7 +6074 12147 12148 \N 2025 8 +6075 12149 12150 \N 2025 9 +6076 12151 12152 \N 2026 7 +6077 12153 12154 \N 2026 8 +6078 12155 12156 \N 2026 9 +6079 12157 12158 \N 2027 7 +6080 12159 12160 \N 2027 8 +6081 12161 12162 \N 2027 9 +6082 12163 12164 \N 2028 7 +6083 12165 12166 \N 2028 8 +6084 12167 12168 \N 2028 9 +6085 12169 12170 \N 2029 7 +6086 12171 12172 \N 2029 8 +6087 12173 12174 \N 2029 9 +6088 12175 12176 \N 2030 7 +6089 12177 12178 \N 2030 8 +6090 12179 12180 \N 2030 9 +6091 12181 12182 \N 2031 7 +6092 12183 12184 \N 2031 8 +6093 12185 12186 \N 2031 9 +6094 12187 12188 \N 2032 7 +6095 12189 12190 \N 2032 8 +6096 12191 12192 \N 2032 9 +6097 12193 12194 \N 2033 7 +6098 12195 12196 \N 2033 8 +6099 12197 12198 \N 2033 9 +6100 12199 12200 \N 2034 7 +6101 12201 12202 \N 2034 8 +6102 12203 12204 \N 2034 9 +6103 12205 12206 \N 2035 7 +6104 12207 12208 \N 2035 8 +6105 12209 12210 \N 2035 9 +6106 12211 12212 \N 2036 7 +6107 12213 12214 \N 2036 8 +6108 12215 12216 \N 2036 9 +6109 12217 12218 \N 2037 7 +6110 12219 12220 \N 2037 8 +6111 12221 12222 \N 2037 9 +6112 12223 12224 \N 2038 7 +6113 12225 12226 \N 2038 8 +6114 12227 12228 \N 2038 9 +6115 12229 12230 \N 2039 7 +6116 12231 12232 \N 2039 8 +6117 12233 12234 \N 2039 9 +6118 12235 12236 \N 2040 7 +6119 12237 12238 \N 2040 8 +6120 12239 12240 \N 2040 9 +6121 12241 12242 \N 2041 7 +6122 12243 12244 \N 2041 8 +6123 12245 12246 \N 2041 9 +6124 12247 12248 \N 2042 7 +6125 12249 12250 \N 2042 8 +6126 12251 12252 \N 2042 9 +6127 12253 12254 \N 2043 7 +6128 12255 12256 \N 2043 8 +6129 12257 12258 \N 2043 9 +6130 12259 12260 \N 2044 7 +6131 12261 12262 \N 2044 8 +6132 12263 12264 \N 2044 9 +6133 12265 12266 \N 2045 7 +6134 12267 12268 \N 2045 8 +6135 12269 12270 \N 2045 9 +6136 12271 12272 \N 2046 7 +6137 12273 12274 \N 2046 8 +6138 12275 12276 \N 2046 9 +6139 12277 12278 \N 2047 7 +6140 12279 12280 \N 2047 8 +6141 12281 12282 \N 2047 9 +6142 12283 12284 \N 2048 7 +6143 12285 12286 \N 2048 8 +6144 12287 12288 \N 2048 9 +6145 12289 12290 \N 2049 7 +6146 12291 12292 \N 2049 8 +6147 12293 12294 \N 2049 9 +6148 12295 12296 \N 2050 7 +6149 12297 12298 \N 2050 8 +6150 12299 12300 \N 2050 9 +6151 12301 12302 \N 2051 7 +6152 12303 12304 \N 2051 8 +6153 12305 12306 \N 2051 9 +6154 12307 12308 \N 2052 7 +6155 12309 12310 \N 2052 8 +6156 12311 12312 \N 2052 9 +6157 12313 12314 \N 2053 7 +6158 12315 12316 \N 2053 8 +6159 12317 12318 \N 2053 9 +6160 12319 12320 \N 2054 7 +6161 12321 12322 \N 2054 8 +6162 12323 12324 \N 2054 9 +6163 12325 12326 \N 2055 7 +6164 12327 12328 \N 2055 8 +6165 12329 12330 \N 2055 9 +6166 12331 12332 \N 2056 7 +6167 12333 12334 \N 2056 8 +6168 12335 12336 \N 2056 9 +6169 12337 12338 \N 2057 7 +6170 12339 12340 \N 2057 8 +6171 12341 12342 \N 2057 9 +6172 12343 12344 \N 2058 7 +6173 12345 12346 \N 2058 8 +6174 12347 12348 \N 2058 9 +6175 12349 12350 \N 2059 7 +6176 12351 12352 \N 2059 8 +6177 12353 12354 \N 2059 9 +6178 12355 12356 \N 2060 7 +6179 12357 12358 \N 2060 8 +6180 12359 12360 \N 2060 9 +6181 12361 12362 \N 2061 7 +6182 12363 12364 \N 2061 8 +6183 12365 12366 \N 2061 9 +6184 12367 12368 \N 2062 7 +6185 12369 12370 \N 2062 8 +6186 12371 12372 \N 2062 9 +6187 12373 12374 \N 2063 7 +6188 12375 12376 \N 2063 8 +6189 12377 12378 \N 2063 9 +6190 12379 12380 \N 2064 7 +6191 12381 12382 \N 2064 8 +6192 12383 12384 \N 2064 9 +6193 12385 12386 \N 2065 7 +6194 12387 12388 \N 2065 8 +6195 12389 12390 \N 2065 9 +6196 12391 12392 \N 2066 7 +6197 12393 12394 \N 2066 8 +6198 12395 12396 \N 2066 9 +6199 12397 12398 \N 2067 7 +6200 12399 12400 \N 2067 8 +6201 12401 12402 \N 2067 9 +6202 12403 12404 \N 2068 7 +6203 12405 12406 \N 2068 8 +6204 12407 12408 \N 2068 9 +6205 12409 12410 \N 2069 7 +6206 12411 12412 \N 2069 8 +6207 12413 12414 \N 2069 9 +6208 12415 12416 \N 2070 7 +6209 12417 12418 \N 2070 8 +6210 12419 12420 \N 2070 9 +6211 12421 12422 \N 2071 7 +6212 12423 12424 \N 2071 8 +6213 12425 12426 \N 2071 9 +6214 12427 12428 \N 2072 7 +6215 12429 12430 \N 2072 8 +6216 12431 12432 \N 2072 9 +6217 12433 12434 \N 2073 7 +6218 12435 12436 \N 2073 8 +6219 12437 12438 \N 2073 9 +6220 12439 12440 \N 2074 7 +6221 12441 12442 \N 2074 8 +6222 12443 12444 \N 2074 9 +6223 12445 12446 \N 2075 7 +6224 12447 12448 \N 2075 8 +6225 12449 12450 \N 2075 9 +6226 12451 12452 \N 2076 7 +6227 12453 12454 \N 2076 8 +6228 12455 12456 \N 2076 9 +6229 12457 12458 \N 2077 7 +6230 12459 12460 \N 2077 8 +6231 12461 12462 \N 2077 9 +6232 12463 12464 \N 2078 7 +6233 12465 12466 \N 2078 8 +6234 12467 12468 \N 2078 9 +6235 12469 12470 \N 2079 7 +6236 12471 12472 \N 2079 8 +6237 12473 12474 \N 2079 9 +6238 12475 12476 \N 2080 7 +6239 12477 12478 \N 2080 8 +6240 12479 12480 \N 2080 9 +6241 12481 12482 \N 2081 7 +6242 12483 12484 \N 2081 8 +6243 12485 12486 \N 2081 9 +6244 12487 12488 \N 2082 7 +6245 12489 12490 \N 2082 8 +6246 12491 12492 \N 2082 9 +6247 12493 12494 \N 2083 7 +6248 12495 12496 \N 2083 8 +6249 12497 12498 \N 2083 9 +6250 12499 12500 \N 2084 7 +6251 12501 12502 \N 2084 8 +6252 12503 12504 \N 2084 9 +6253 12505 12506 \N 2085 7 +6254 12507 12508 \N 2085 8 +6255 12509 12510 \N 2085 9 +6256 12511 12512 \N 2086 7 +6257 12513 12514 \N 2086 8 +6258 12515 12516 \N 2086 9 +6259 12517 12518 \N 2087 7 +6260 12519 12520 \N 2087 8 +6261 12521 12522 \N 2087 9 +6262 12523 12524 \N 2088 7 +6263 12525 12526 \N 2088 8 +6264 12527 12528 \N 2088 9 +6265 12529 12530 \N 2089 7 +6266 12531 12532 \N 2089 8 +6267 12533 12534 \N 2089 9 +6268 12535 12536 \N 2090 7 +6269 12537 12538 \N 2090 8 +6270 12539 12540 \N 2090 9 +6271 12541 12542 \N 2091 7 +6272 12543 12544 \N 2091 8 +6273 12545 12546 \N 2091 9 +6274 12547 12548 \N 2092 7 +6275 12549 12550 \N 2092 8 +6276 12551 12552 \N 2092 9 +6277 12553 12554 \N 2093 7 +6278 12555 12556 \N 2093 8 +6279 12557 12558 \N 2093 9 +6280 12559 12560 \N 2094 7 +6281 12561 12562 \N 2094 8 +6282 12563 12564 \N 2094 9 +6283 12565 12566 \N 2095 7 +6284 12567 12568 \N 2095 8 +6285 12569 12570 \N 2095 9 +6286 12571 12572 \N 2096 7 +6287 12573 12574 \N 2096 8 +6288 12575 12576 \N 2096 9 +6289 12577 12578 \N 2097 7 +6290 12579 12580 \N 2097 8 +6291 12581 12582 \N 2097 9 +6292 12583 12584 \N 2098 7 +6293 12585 12586 \N 2098 8 +6294 12587 12588 \N 2098 9 +6295 12589 12590 \N 2099 7 +6296 12591 12592 \N 2099 8 +6297 12593 12594 \N 2099 9 +6298 12595 12596 \N 2100 7 +6299 12597 12598 \N 2100 8 +6300 12599 12600 \N 2100 9 +6301 12601 12602 \N 2101 7 +6302 12603 12604 \N 2101 8 +6303 12605 12606 \N 2101 9 +6304 12607 12608 \N 2102 7 +6305 12609 12610 \N 2102 8 +6306 12611 12612 \N 2102 9 +6307 12613 12614 \N 2103 7 +6308 12615 12616 \N 2103 8 +6309 12617 12618 \N 2103 9 +6310 12619 12620 \N 2104 7 +6311 12621 12622 \N 2104 8 +6312 12623 12624 \N 2104 9 +6313 12625 12626 \N 2105 7 +6314 12627 12628 \N 2105 8 +6315 12629 12630 \N 2105 9 +6316 12631 12632 \N 2106 7 +6317 12633 12634 \N 2106 8 +6318 12635 12636 \N 2106 9 +6319 12637 12638 \N 2107 7 +6320 12639 12640 \N 2107 8 +6321 12641 12642 \N 2107 9 +6322 12643 12644 \N 2108 7 +6323 12645 12646 \N 2108 8 +6324 12647 12648 \N 2108 9 +6325 12649 12650 \N 2109 7 +6326 12651 12652 \N 2109 8 +6327 12653 12654 \N 2109 9 +6328 12655 12656 \N 2110 7 +6329 12657 12658 \N 2110 8 +6330 12659 12660 \N 2110 9 +6331 12661 12662 \N 2111 7 +6332 12663 12664 \N 2111 8 +6333 12665 12666 \N 2111 9 +6334 12667 12668 \N 2112 7 +6335 12669 12670 \N 2112 8 +6336 12671 12672 \N 2112 9 +6337 12673 12674 \N 2113 7 +6338 12675 12676 \N 2113 8 +6339 12677 12678 \N 2113 9 +6340 12679 12680 \N 2114 7 +6341 12681 12682 \N 2114 8 +6342 12683 12684 \N 2114 9 +6343 12685 12686 \N 2115 7 +6344 12687 12688 \N 2115 8 +6345 12689 12690 \N 2115 9 +6346 12691 12692 \N 2116 7 +6347 12693 12694 \N 2116 8 +6348 12695 12696 \N 2116 9 +6349 12697 12698 \N 2117 7 +6350 12699 12700 \N 2117 8 +6351 12701 12702 \N 2117 9 +6352 12703 12704 \N 2118 7 +6353 12705 12706 \N 2118 8 +6354 12707 12708 \N 2118 9 +6355 12709 12710 \N 2119 7 +6356 12711 12712 \N 2119 8 +6357 12713 12714 \N 2119 9 +6358 12715 12716 \N 2120 7 +6359 12717 12718 \N 2120 8 +6360 12719 12720 \N 2120 9 +6361 12721 12722 \N 2121 7 +6362 12723 12724 \N 2121 8 +6363 12725 12726 \N 2121 9 +6364 12727 12728 \N 2122 7 +6365 12729 12730 \N 2122 8 +6366 12731 12732 \N 2122 9 +6367 12733 12734 \N 2123 7 +6368 12735 12736 \N 2123 8 +6369 12737 12738 \N 2123 9 +6370 12739 12740 \N 2124 7 +6371 12741 12742 \N 2124 8 +6372 12743 12744 \N 2124 9 +6373 12745 12746 \N 2125 7 +6374 12747 12748 \N 2125 8 +6375 12749 12750 \N 2125 9 +6376 12751 12752 \N 2126 7 +6377 12753 12754 \N 2126 8 +6378 12755 12756 \N 2126 9 +6379 12757 12758 \N 2127 7 +6380 12759 12760 \N 2127 8 +6381 12761 12762 \N 2127 9 +6382 12763 12764 \N 2128 7 +6383 12765 12766 \N 2128 8 +6384 12767 12768 \N 2128 9 +6385 12769 12770 \N 2129 7 +6386 12771 12772 \N 2129 8 +6387 12773 12774 \N 2129 9 +6388 12775 12776 \N 2130 7 +6389 12777 12778 \N 2130 8 +6390 12779 12780 \N 2130 9 +6391 12781 12782 \N 2131 7 +6392 12783 12784 \N 2131 8 +6393 12785 12786 \N 2131 9 +6394 12787 12788 \N 2132 7 +6395 12789 12790 \N 2132 8 +6396 12791 12792 \N 2132 9 +6397 12793 12794 \N 2133 7 +6398 12795 12796 \N 2133 8 +6399 12797 12798 \N 2133 9 +6400 12799 12800 \N 2134 7 +6401 12801 12802 \N 2134 8 +6402 12803 12804 \N 2134 9 +6403 12805 12806 \N 2135 7 +6404 12807 12808 \N 2135 8 +6405 12809 12810 \N 2135 9 +6406 12811 12812 \N 2136 7 +6407 12813 12814 \N 2136 8 +6408 12815 12816 \N 2136 9 +6409 12817 12818 \N 2137 7 +6410 12819 12820 \N 2137 8 +6411 12821 12822 \N 2137 9 +6412 12823 12824 \N 2138 7 +6413 12825 12826 \N 2138 8 +6414 12827 12828 \N 2138 9 +6415 12829 12830 \N 2139 7 +6416 12831 12832 \N 2139 8 +6417 12833 12834 \N 2139 9 +6418 12835 12836 \N 2140 7 +6419 12837 12838 \N 2140 8 +6420 12839 12840 \N 2140 9 +6421 12841 12842 \N 2141 7 +6422 12843 12844 \N 2141 8 +6423 12845 12846 \N 2141 9 +6424 12847 12848 \N 2142 7 +6425 12849 12850 \N 2142 8 +6426 12851 12852 \N 2142 9 +6427 12853 12854 \N 2143 7 +6428 12855 12856 \N 2143 8 +6429 12857 12858 \N 2143 9 +6430 12859 12860 \N 2144 7 +6431 12861 12862 \N 2144 8 +6432 12863 12864 \N 2144 9 +6433 12865 12866 \N 2145 7 +6434 12867 12868 \N 2145 8 +6435 12869 12870 \N 2145 9 +6436 12871 12872 \N 2146 7 +6437 12873 12874 \N 2146 8 +6438 12875 12876 \N 2146 9 +6439 12877 12878 \N 2147 7 +6440 12879 12880 \N 2147 8 +6441 12881 12882 \N 2147 9 +6442 12883 12884 \N 2148 7 +6443 12885 12886 \N 2148 8 +6444 12887 12888 \N 2148 9 +6445 12889 12890 \N 2149 7 +6446 12891 12892 \N 2149 8 +6447 12893 12894 \N 2149 9 +6448 12895 12896 \N 2150 7 +6449 12897 12898 \N 2150 8 +6450 12899 12900 \N 2150 9 +6451 12901 12902 \N 2151 7 +6452 12903 12904 \N 2151 8 +6453 12905 12906 \N 2151 9 +6454 12907 12908 \N 2152 7 +6455 12909 12910 \N 2152 8 +6456 12911 12912 \N 2152 9 +6457 12913 12914 \N 2153 7 +6458 12915 12916 \N 2153 8 +6459 12917 12918 \N 2153 9 +6460 12919 12920 \N 2154 7 +6461 12921 12922 \N 2154 8 +6462 12923 12924 \N 2154 9 +6463 12925 12926 \N 2155 7 +6464 12927 12928 \N 2155 8 +6465 12929 12930 \N 2155 9 +6466 12931 12932 \N 2156 7 +6467 12933 12934 \N 2156 8 +6468 12935 12936 \N 2156 9 +6469 12937 12938 \N 2157 7 +6470 12939 12940 \N 2157 8 +6471 12941 12942 \N 2157 9 +6472 12943 12944 \N 2158 7 +6473 12945 12946 \N 2158 8 +6474 12947 12948 \N 2158 9 +6475 12949 12950 \N 2159 7 +6476 12951 12952 \N 2159 8 +6477 12953 12954 \N 2159 9 +6478 12955 12956 \N 2160 7 +6479 12957 12958 \N 2160 8 +6480 12959 12960 \N 2160 9 +6481 12961 12962 \N 2161 7 +6482 12963 12964 \N 2161 8 +6483 12965 12966 \N 2161 9 +6484 12967 12968 \N 2162 7 +6485 12969 12970 \N 2162 8 +6486 12971 12972 \N 2162 9 +6487 12973 12974 \N 2163 7 +6488 12975 12976 \N 2163 8 +6489 12977 12978 \N 2163 9 +6490 12979 12980 \N 2164 7 +6491 12981 12982 \N 2164 8 +6492 12983 12984 \N 2164 9 +6493 12985 12986 \N 2165 7 +6494 12987 12988 \N 2165 8 +6495 12989 12990 \N 2165 9 +6496 12991 12992 \N 2166 7 +6497 12993 12994 \N 2166 8 +6498 12995 12996 \N 2166 9 +6499 12997 12998 \N 2167 7 +6500 12999 13000 \N 2167 8 +6501 13001 13002 \N 2167 9 +6502 13003 13004 \N 2168 7 +6503 13005 13006 \N 2168 8 +6504 13007 13008 \N 2168 9 +6505 13009 13010 \N 2169 7 +6506 13011 13012 \N 2169 8 +6507 13013 13014 \N 2169 9 +6508 13015 13016 \N 2170 7 +6509 13017 13018 \N 2170 8 +6510 13019 13020 \N 2170 9 +6511 13021 13022 \N 2171 7 +6512 13023 13024 \N 2171 8 +6513 13025 13026 \N 2171 9 +6514 13027 13028 \N 2172 7 +6515 13029 13030 \N 2172 8 +6516 13031 13032 \N 2172 9 +6517 13033 13034 \N 2173 7 +6518 13035 13036 \N 2173 8 +6519 13037 13038 \N 2173 9 +6520 13039 13040 \N 2174 7 +6521 13041 13042 \N 2174 8 +6522 13043 13044 \N 2174 9 +6523 13045 13046 \N 2175 7 +6524 13047 13048 \N 2175 8 +6525 13049 13050 \N 2175 9 +6526 13051 13052 \N 2176 7 +6527 13053 13054 \N 2176 8 +6528 13055 13056 \N 2176 9 +6529 13057 13058 \N 2177 7 +6530 13059 13060 \N 2177 8 +6531 13061 13062 \N 2177 9 +6532 13063 13064 \N 2178 7 +6533 13065 13066 \N 2178 8 +6534 13067 13068 \N 2178 9 +6535 13069 13070 \N 2179 7 +6536 13071 13072 \N 2179 8 +6537 13073 13074 \N 2179 9 +6538 13075 13076 \N 2180 7 +6539 13077 13078 \N 2180 8 +6540 13079 13080 \N 2180 9 +6541 13081 13082 \N 2181 7 +6542 13083 13084 \N 2181 8 +6543 13085 13086 \N 2181 9 +6544 13087 13088 \N 2182 7 +6545 13089 13090 \N 2182 8 +6546 13091 13092 \N 2182 9 +6547 13093 13094 \N 2183 7 +6548 13095 13096 \N 2183 8 +6549 13097 13098 \N 2183 9 +6550 13099 13100 \N 2184 7 +6551 13101 13102 \N 2184 8 +6552 13103 13104 \N 2184 9 +6553 13105 13106 \N 2185 7 +6554 13107 13108 \N 2185 8 +6555 13109 13110 \N 2185 9 +6556 13111 13112 \N 2186 7 +6557 13113 13114 \N 2186 8 +6558 13115 13116 \N 2186 9 +6559 13117 13118 \N 2187 7 +6560 13119 13120 \N 2187 8 +6561 13121 13122 \N 2187 9 +6562 13123 13124 \N 2188 7 +6563 13125 13126 \N 2188 8 +6564 13127 13128 \N 2188 9 +6565 13129 13130 \N 2189 7 +6566 13131 13132 \N 2189 8 +6567 13133 13134 \N 2189 9 +6568 13135 13136 \N 2190 7 +6569 13137 13138 \N 2190 8 +6570 13139 13140 \N 2190 9 +6571 13141 13142 \N 2191 7 +6572 13143 13144 \N 2191 8 +6573 13145 13146 \N 2191 9 +6574 13147 13148 \N 2192 7 +6575 13149 13150 \N 2192 8 +6576 13151 13152 \N 2192 9 +6577 13153 13154 \N 2193 7 +6578 13155 13156 \N 2193 8 +6579 13157 13158 \N 2193 9 +6580 13159 13160 \N 2194 7 +6581 13161 13162 \N 2194 8 +6582 13163 13164 \N 2194 9 +6583 13165 13166 \N 2195 7 +6584 13167 13168 \N 2195 8 +6585 13169 13170 \N 2195 9 +6586 13171 13172 \N 2196 7 +6587 13173 13174 \N 2196 8 +6588 13175 13176 \N 2196 9 +6589 13177 13178 \N 2197 7 +6590 13179 13180 \N 2197 8 +6591 13181 13182 \N 2197 9 +6592 13183 13184 \N 2198 7 +6593 13185 13186 \N 2198 8 +6594 13187 13188 \N 2198 9 +6595 13189 13190 \N 2199 7 +6596 13191 13192 \N 2199 8 +6597 13193 13194 \N 2199 9 +6598 13195 13196 \N 2200 7 +6599 13197 13198 \N 2200 8 +6600 13199 13200 \N 2200 9 +6601 13201 13202 \N 2201 7 +6602 13203 13204 \N 2201 8 +6603 13205 13206 \N 2201 9 +6604 13207 13208 \N 2202 7 +6605 13209 13210 \N 2202 8 +6606 13211 13212 \N 2202 9 +6607 13213 13214 \N 2203 7 +6608 13215 13216 \N 2203 8 +6609 13217 13218 \N 2203 9 +6610 13219 13220 \N 2204 7 +6611 13221 13222 \N 2204 8 +6612 13223 13224 \N 2204 9 +6613 13225 13226 \N 2205 7 +6614 13227 13228 \N 2205 8 +6615 13229 13230 \N 2205 9 +6616 13231 13232 \N 2206 7 +6617 13233 13234 \N 2206 8 +6618 13235 13236 \N 2206 9 +6619 13237 13238 \N 2207 7 +6620 13239 13240 \N 2207 8 +6621 13241 13242 \N 2207 9 +6622 13243 13244 \N 2208 7 +6623 13245 13246 \N 2208 8 +6624 13247 13248 \N 2208 9 +6625 13249 13250 \N 2209 7 +6626 13251 13252 \N 2209 8 +6627 13253 13254 \N 2209 9 +6628 13255 13256 \N 2210 7 +6629 13257 13258 \N 2210 8 +6630 13259 13260 \N 2210 9 +6631 13261 13262 \N 2211 7 +6632 13263 13264 \N 2211 8 +6633 13265 13266 \N 2211 9 +6634 13267 13268 \N 2212 7 +6635 13269 13270 \N 2212 8 +6636 13271 13272 \N 2212 9 +6637 13273 13274 \N 2213 7 +6638 13275 13276 \N 2213 8 +6639 13277 13278 \N 2213 9 +6640 13279 13280 \N 2214 7 +6641 13281 13282 \N 2214 8 +6642 13283 13284 \N 2214 9 +6643 13285 13286 \N 2215 7 +6644 13287 13288 \N 2215 8 +6645 13289 13290 \N 2215 9 +6646 13291 13292 \N 2216 7 +6647 13293 13294 \N 2216 8 +6648 13295 13296 \N 2216 9 +6649 13297 13298 \N 2217 7 +6650 13299 13300 \N 2217 8 +6651 13301 13302 \N 2217 9 +6652 13303 13304 \N 2218 7 +6653 13305 13306 \N 2218 8 +6654 13307 13308 \N 2218 9 +6655 13309 13310 \N 2219 7 +6656 13311 13312 \N 2219 8 +6657 13313 13314 \N 2219 9 +6658 13315 13316 \N 2220 7 +6659 13317 13318 \N 2220 8 +6660 13319 13320 \N 2220 9 +6661 13321 13322 \N 2221 7 +6662 13323 13324 \N 2221 8 +6663 13325 13326 \N 2221 9 +6664 13327 13328 \N 2222 7 +6665 13329 13330 \N 2222 8 +6666 13331 13332 \N 2222 9 +6667 13333 13334 \N 2223 7 +6668 13335 13336 \N 2223 8 +6669 13337 13338 \N 2223 9 +6670 13339 13340 \N 2224 7 +6671 13341 13342 \N 2224 8 +6672 13343 13344 \N 2224 9 +6673 13345 13346 \N 2225 7 +6674 13347 13348 \N 2225 8 +6675 13349 13350 \N 2225 9 +6676 13351 13352 \N 2226 7 +6677 13353 13354 \N 2226 8 +6678 13355 13356 \N 2226 9 +6679 13357 13358 \N 2227 7 +6680 13359 13360 \N 2227 8 +6681 13361 13362 \N 2227 9 +6682 13363 13364 \N 2228 7 +6683 13365 13366 \N 2228 8 +6684 13367 13368 \N 2228 9 +6685 13369 13370 \N 2229 7 +6686 13371 13372 \N 2229 8 +6687 13373 13374 \N 2229 9 +6688 13375 13376 \N 2230 7 +6689 13377 13378 \N 2230 8 +6690 13379 13380 \N 2230 9 +6691 13381 13382 \N 2231 7 +6692 13383 13384 \N 2231 8 +6693 13385 13386 \N 2231 9 +6694 13387 13388 \N 2232 7 +6695 13389 13390 \N 2232 8 +6696 13391 13392 \N 2232 9 +6697 13393 13394 \N 2233 7 +6698 13395 13396 \N 2233 8 +6699 13397 13398 \N 2233 9 +6700 13399 13400 \N 2234 7 +6701 13401 13402 \N 2234 8 +6702 13403 13404 \N 2234 9 +6703 13405 13406 \N 2235 7 +6704 13407 13408 \N 2235 8 +6705 13409 13410 \N 2235 9 +6706 13411 13412 \N 2236 7 +6707 13413 13414 \N 2236 8 +6708 13415 13416 \N 2236 9 +6709 13417 13418 \N 2237 7 +6710 13419 13420 \N 2237 8 +6711 13421 13422 \N 2237 9 +6712 13423 13424 \N 2238 7 +6713 13425 13426 \N 2238 8 +6714 13427 13428 \N 2238 9 +6715 13429 13430 \N 2239 7 +6716 13431 13432 \N 2239 8 +6717 13433 13434 \N 2239 9 +6718 13435 13436 \N 2240 7 +6719 13437 13438 \N 2240 8 +6720 13439 13440 \N 2240 9 +6721 13441 13442 \N 2241 7 +6722 13443 13444 \N 2241 8 +6723 13445 13446 \N 2241 9 +6724 13447 13448 \N 2242 7 +6725 13449 13450 \N 2242 8 +6726 13451 13452 \N 2242 9 +6727 13453 13454 \N 2243 7 +6728 13455 13456 \N 2243 8 +6729 13457 13458 \N 2243 9 +6730 13459 13460 \N 2244 7 +6731 13461 13462 \N 2244 8 +6732 13463 13464 \N 2244 9 +6733 13465 13466 \N 2245 7 +6734 13467 13468 \N 2245 8 +6735 13469 13470 \N 2245 9 +6736 13471 13472 \N 2246 7 +6737 13473 13474 \N 2246 8 +6738 13475 13476 \N 2246 9 +6739 13477 13478 \N 2247 7 +6740 13479 13480 \N 2247 8 +6741 13481 13482 \N 2247 9 +6742 13483 13484 \N 2248 7 +6743 13485 13486 \N 2248 8 +6744 13487 13488 \N 2248 9 +6745 13489 13490 \N 2249 7 +6746 13491 13492 \N 2249 8 +6747 13493 13494 \N 2249 9 +6748 13495 13496 \N 2250 7 +6749 13497 13498 \N 2250 8 +6750 13499 13500 \N 2250 9 +6751 13501 13502 \N 2251 7 +6752 13503 13504 \N 2251 8 +6753 13505 13506 \N 2251 9 +6754 13507 13508 \N 2252 7 +6755 13509 13510 \N 2252 8 +6756 13511 13512 \N 2252 9 +6757 13513 13514 \N 2253 7 +6758 13515 13516 \N 2253 8 +6759 13517 13518 \N 2253 9 +6760 13519 13520 \N 2254 7 +6761 13521 13522 \N 2254 8 +6762 13523 13524 \N 2254 9 +6763 13525 13526 \N 2255 7 +6764 13527 13528 \N 2255 8 +6765 13529 13530 \N 2255 9 +6766 13531 13532 \N 2256 7 +6767 13533 13534 \N 2256 8 +6768 13535 13536 \N 2256 9 +6769 13537 13538 \N 2257 7 +6770 13539 13540 \N 2257 8 +6771 13541 13542 \N 2257 9 +6772 13543 13544 \N 2258 7 +6773 13545 13546 \N 2258 8 +6774 13547 13548 \N 2258 9 +6775 13549 13550 \N 2259 7 +6776 13551 13552 \N 2259 8 +6777 13553 13554 \N 2259 9 +6778 13555 13556 \N 2260 7 +6779 13557 13558 \N 2260 8 +6780 13559 13560 \N 2260 9 +6781 13561 13562 \N 2261 7 +6782 13563 13564 \N 2261 8 +6783 13565 13566 \N 2261 9 +6784 13567 13568 \N 2262 7 +6785 13569 13570 \N 2262 8 +6786 13571 13572 \N 2262 9 +6787 13573 13574 \N 2263 7 +6788 13575 13576 \N 2263 8 +6789 13577 13578 \N 2263 9 +6790 13579 13580 \N 2264 7 +6791 13581 13582 \N 2264 8 +6792 13583 13584 \N 2264 9 +6793 13585 13586 \N 2265 7 +6794 13587 13588 \N 2265 8 +6795 13589 13590 \N 2265 9 +6796 13591 13592 \N 2266 7 +6797 13593 13594 \N 2266 8 +6798 13595 13596 \N 2266 9 +6799 13597 13598 \N 2267 7 +6800 13599 13600 \N 2267 8 +6801 13601 13602 \N 2267 9 +6802 13603 13604 \N 2268 7 +6803 13605 13606 \N 2268 8 +6804 13607 13608 \N 2268 9 +6805 13609 13610 \N 2269 7 +6806 13611 13612 \N 2269 8 +6807 13613 13614 \N 2269 9 +6808 13615 13616 \N 2270 7 +6809 13617 13618 \N 2270 8 +6810 13619 13620 \N 2270 9 +6811 13621 13622 \N 2271 7 +6812 13623 13624 \N 2271 8 +6813 13625 13626 \N 2271 9 +6814 13627 13628 \N 2272 7 +6815 13629 13630 \N 2272 8 +6816 13631 13632 \N 2272 9 +6817 13633 13634 \N 2273 7 +6818 13635 13636 \N 2273 8 +6819 13637 13638 \N 2273 9 +6820 13639 13640 \N 2274 7 +6821 13641 13642 \N 2274 8 +6822 13643 13644 \N 2274 9 +6823 13645 13646 \N 2275 7 +6824 13647 13648 \N 2275 8 +6825 13649 13650 \N 2275 9 +6826 13651 13652 \N 2276 7 +6827 13653 13654 \N 2276 8 +6828 13655 13656 \N 2276 9 +6829 13657 13658 \N 2277 7 +6830 13659 13660 \N 2277 8 +6831 13661 13662 \N 2277 9 +6832 13663 13664 \N 2278 7 +6833 13665 13666 \N 2278 8 +6834 13667 13668 \N 2278 9 +6835 13669 13670 \N 2279 7 +6836 13671 13672 \N 2279 8 +6837 13673 13674 \N 2279 9 +6838 13675 13676 \N 2280 7 +6839 13677 13678 \N 2280 8 +6840 13679 13680 \N 2280 9 +6841 13681 13682 \N 2281 7 +6842 13683 13684 \N 2281 8 +6843 13685 13686 \N 2281 9 +6844 13687 13688 \N 2282 7 +6845 13689 13690 \N 2282 8 +6846 13691 13692 \N 2282 9 +6847 13693 13694 \N 2283 7 +6848 13695 13696 \N 2283 8 +6849 13697 13698 \N 2283 9 +6850 13699 13700 \N 2284 7 +6851 13701 13702 \N 2284 8 +6852 13703 13704 \N 2284 9 +6853 13705 13706 \N 2285 7 +6854 13707 13708 \N 2285 8 +6855 13709 13710 \N 2285 9 +6856 13711 13712 \N 2286 7 +6857 13713 13714 \N 2286 8 +6858 13715 13716 \N 2286 9 +6859 13717 13718 \N 2287 7 +6860 13719 13720 \N 2287 8 +6861 13721 13722 \N 2287 9 +6862 13723 13724 \N 2288 7 +6863 13725 13726 \N 2288 8 +6864 13727 13728 \N 2288 9 +6865 13729 13730 \N 2289 7 +6866 13731 13732 \N 2289 8 +6867 13733 13734 \N 2289 9 +6868 13735 13736 \N 2290 7 +6869 13737 13738 \N 2290 8 +6870 13739 13740 \N 2290 9 +6871 13741 13742 \N 2291 7 +6872 13743 13744 \N 2291 8 +6873 13745 13746 \N 2291 9 +6874 13747 13748 \N 2292 7 +6875 13749 13750 \N 2292 8 +6876 13751 13752 \N 2292 9 +6877 13753 13754 \N 2293 7 +6878 13755 13756 \N 2293 8 +6879 13757 13758 \N 2293 9 +6880 13759 13760 \N 2294 7 +6881 13761 13762 \N 2294 8 +6882 13763 13764 \N 2294 9 +6883 13765 13766 \N 2295 7 +6884 13767 13768 \N 2295 8 +6885 13769 13770 \N 2295 9 +6886 13771 13772 \N 2296 7 +6887 13773 13774 \N 2296 8 +6888 13775 13776 \N 2296 9 +6889 13777 13778 \N 2297 7 +6890 13779 13780 \N 2297 8 +6891 13781 13782 \N 2297 9 +6892 13783 13784 \N 2298 7 +6893 13785 13786 \N 2298 8 +6894 13787 13788 \N 2298 9 +6895 13789 13790 \N 2299 7 +6896 13791 13792 \N 2299 8 +6897 13793 13794 \N 2299 9 +6898 13795 13796 \N 2300 7 +6899 13797 13798 \N 2300 8 +6900 13799 13800 \N 2300 9 +6901 13801 13802 \N 2301 7 +6902 13803 13804 \N 2301 8 +6903 13805 13806 \N 2301 9 +6904 13807 13808 \N 2302 7 +6905 13809 13810 \N 2302 8 +6906 13811 13812 \N 2302 9 +6907 13813 13814 \N 2303 7 +6908 13815 13816 \N 2303 8 +6909 13817 13818 \N 2303 9 +6910 13819 13820 \N 2304 7 +6911 13821 13822 \N 2304 8 +6912 13823 13824 \N 2304 9 +6913 13825 13826 \N 2305 7 +6914 13827 13828 \N 2305 8 +6915 13829 13830 \N 2305 9 +6916 13831 13832 \N 2306 7 +6917 13833 13834 \N 2306 8 +6918 13835 13836 \N 2306 9 +6919 13837 13838 \N 2307 7 +6920 13839 13840 \N 2307 8 +6921 13841 13842 \N 2307 9 +6922 13843 13844 \N 2308 7 +6923 13845 13846 \N 2308 8 +6924 13847 13848 \N 2308 9 +6925 13849 13850 \N 2309 7 +6926 13851 13852 \N 2309 8 +6927 13853 13854 \N 2309 9 +6928 13855 13856 \N 2310 7 +6929 13857 13858 \N 2310 8 +6930 13859 13860 \N 2310 9 +6931 13861 13862 \N 2311 7 +6932 13863 13864 \N 2311 8 +6933 13865 13866 \N 2311 9 +6934 13867 13868 \N 2312 7 +6935 13869 13870 \N 2312 8 +6936 13871 13872 \N 2312 9 +6937 13873 13874 \N 2313 7 +6938 13875 13876 \N 2313 8 +6939 13877 13878 \N 2313 9 +6940 13879 13880 \N 2314 7 +6941 13881 13882 \N 2314 8 +6942 13883 13884 \N 2314 9 +6943 13885 13886 \N 2315 7 +6944 13887 13888 \N 2315 8 +6945 13889 13890 \N 2315 9 +6946 13891 13892 \N 2316 7 +6947 13893 13894 \N 2316 8 +6948 13895 13896 \N 2316 9 +6949 13897 13898 \N 2317 7 +6950 13899 13900 \N 2317 8 +6951 13901 13902 \N 2317 9 +6952 13903 13904 \N 2318 7 +6953 13905 13906 \N 2318 8 +6954 13907 13908 \N 2318 9 +6955 13909 13910 \N 2319 7 +6956 13911 13912 \N 2319 8 +6957 13913 13914 \N 2319 9 +6958 13915 13916 \N 2320 7 +6959 13917 13918 \N 2320 8 +6960 13919 13920 \N 2320 9 +6961 13921 13922 \N 2321 7 +6962 13923 13924 \N 2321 8 +6963 13925 13926 \N 2321 9 +6964 13927 13928 \N 2322 7 +6965 13929 13930 \N 2322 8 +6966 13931 13932 \N 2322 9 +6967 13933 13934 \N 2323 7 +6968 13935 13936 \N 2323 8 +6969 13937 13938 \N 2323 9 +6970 13939 13940 \N 2324 7 +6971 13941 13942 \N 2324 8 +6972 13943 13944 \N 2324 9 +6973 13945 13946 \N 2325 7 +6974 13947 13948 \N 2325 8 +6975 13949 13950 \N 2325 9 +6976 13951 13952 \N 2326 7 +6977 13953 13954 \N 2326 8 +6978 13955 13956 \N 2326 9 +6979 13957 13958 \N 2327 7 +6980 13959 13960 \N 2327 8 +6981 13961 13962 \N 2327 9 +6982 13963 13964 \N 2328 7 +6983 13965 13966 \N 2328 8 +6984 13967 13968 \N 2328 9 +6985 13969 13970 \N 2329 7 +6986 13971 13972 \N 2329 8 +6987 13973 13974 \N 2329 9 +6988 13975 13976 \N 2330 7 +6989 13977 13978 \N 2330 8 +6990 13979 13980 \N 2330 9 +6991 13981 13982 \N 2331 7 +6992 13983 13984 \N 2331 8 +6993 13985 13986 \N 2331 9 +6994 13987 13988 \N 2332 7 +6995 13989 13990 \N 2332 8 +6996 13991 13992 \N 2332 9 +6997 13993 13994 \N 2333 7 +6998 13995 13996 \N 2333 8 +6999 13997 13998 \N 2333 9 +7000 13999 14000 \N 2334 7 +7001 14001 14002 \N 2334 8 +7002 14003 14004 \N 2334 9 +7003 14005 14006 \N 2335 7 +7004 14007 14008 \N 2335 8 +7005 14009 14010 \N 2335 9 +7006 14011 14012 \N 2336 7 +7007 14013 14014 \N 2336 8 +7008 14015 14016 \N 2336 9 +7009 14017 14018 \N 2337 7 +7010 14019 14020 \N 2337 8 +7011 14021 14022 \N 2337 9 +7012 14023 14024 \N 2338 7 +7013 14025 14026 \N 2338 8 +7014 14027 14028 \N 2338 9 +7015 14029 14030 \N 2339 7 +7016 14031 14032 \N 2339 8 +7017 14033 14034 \N 2339 9 +7018 14035 14036 \N 2340 7 +7019 14037 14038 \N 2340 8 +7020 14039 14040 \N 2340 9 +7021 14041 14042 \N 2341 7 +7022 14043 14044 \N 2341 8 +7023 14045 14046 \N 2341 9 +7024 14047 14048 \N 2342 7 +7025 14049 14050 \N 2342 8 +7026 14051 14052 \N 2342 9 +7027 14053 14054 \N 2343 7 +7028 14055 14056 \N 2343 8 +7029 14057 14058 \N 2343 9 +7030 14059 14060 \N 2344 7 +7031 14061 14062 \N 2344 8 +7032 14063 14064 \N 2344 9 +7033 14065 14066 \N 2345 7 +7034 14067 14068 \N 2345 8 +7035 14069 14070 \N 2345 9 +7036 14071 14072 \N 2346 7 +7037 14073 14074 \N 2346 8 +7038 14075 14076 \N 2346 9 +7039 14077 14078 \N 2347 7 +7040 14079 14080 \N 2347 8 +7041 14081 14082 \N 2347 9 +7042 14083 14084 \N 2348 7 +7043 14085 14086 \N 2348 8 +7044 14087 14088 \N 2348 9 +7045 14089 14090 \N 2349 7 +7046 14091 14092 \N 2349 8 +7047 14093 14094 \N 2349 9 +7048 14095 14096 \N 2350 7 +7049 14097 14098 \N 2350 8 +7050 14099 14100 \N 2350 9 +7051 14101 14102 \N 2351 7 +7052 14103 14104 \N 2351 8 +7053 14105 14106 \N 2351 9 +7054 14107 14108 \N 2352 7 +7055 14109 14110 \N 2352 8 +7056 14111 14112 \N 2352 9 +7057 14113 14114 \N 2353 7 +7058 14115 14116 \N 2353 8 +7059 14117 14118 \N 2353 9 +7060 14119 14120 \N 2354 7 +7061 14121 14122 \N 2354 8 +7062 14123 14124 \N 2354 9 +7063 14125 14126 \N 2355 7 +7064 14127 14128 \N 2355 8 +7065 14129 14130 \N 2355 9 +7066 14131 14132 \N 2356 7 +7067 14133 14134 \N 2356 8 +7068 14135 14136 \N 2356 9 +7069 14137 14138 \N 2357 7 +7070 14139 14140 \N 2357 8 +7071 14141 14142 \N 2357 9 +7072 14143 14144 \N 2358 7 +7073 14145 14146 \N 2358 8 +7074 14147 14148 \N 2358 9 +7075 14149 14150 \N 2359 7 +7076 14151 14152 \N 2359 8 +7077 14153 14154 \N 2359 9 +7078 14155 14156 \N 2360 7 +7079 14157 14158 \N 2360 8 +7080 14159 14160 \N 2360 9 +7081 14161 14162 \N 2361 7 +7082 14163 14164 \N 2361 8 +7083 14165 14166 \N 2361 9 +7084 14167 14168 \N 2362 7 +7085 14169 14170 \N 2362 8 +7086 14171 14172 \N 2362 9 +7087 14173 14174 \N 2363 7 +7088 14175 14176 \N 2363 8 +7089 14177 14178 \N 2363 9 +7090 14179 14180 \N 2364 7 +7091 14181 14182 \N 2364 8 +7092 14183 14184 \N 2364 9 +7093 14185 14186 \N 2365 7 +7094 14187 14188 \N 2365 8 +7095 14189 14190 \N 2365 9 +7096 14191 14192 \N 2366 7 +7097 14193 14194 \N 2366 8 +7098 14195 14196 \N 2366 9 +7099 14197 14198 \N 2367 7 +7100 14199 14200 \N 2367 8 +7101 14201 14202 \N 2367 9 +7102 14203 14204 \N 2368 7 +7103 14205 14206 \N 2368 8 +7104 14207 14208 \N 2368 9 +7105 14209 14210 \N 2369 7 +7106 14211 14212 \N 2369 8 +7107 14213 14214 \N 2369 9 +7108 14215 14216 \N 2370 7 +7109 14217 14218 \N 2370 8 +7110 14219 14220 \N 2370 9 +7111 14221 14222 \N 2371 7 +7112 14223 14224 \N 2371 8 +7113 14225 14226 \N 2371 9 +7114 14227 14228 \N 2372 7 +7115 14229 14230 \N 2372 8 +7116 14231 14232 \N 2372 9 +7117 14233 14234 \N 2373 7 +7118 14235 14236 \N 2373 8 +7119 14237 14238 \N 2373 9 +7120 14239 14240 \N 2374 7 +7121 14241 14242 \N 2374 8 +7122 14243 14244 \N 2374 9 +7123 14245 14246 \N 2375 7 +7124 14247 14248 \N 2375 8 +7125 14249 14250 \N 2375 9 +7126 14251 14252 \N 2376 7 +7127 14253 14254 \N 2376 8 +7128 14255 14256 \N 2376 9 +7129 14257 14258 \N 2377 7 +7130 14259 14260 \N 2377 8 +7131 14261 14262 \N 2377 9 +7132 14263 14264 \N 2378 7 +7133 14265 14266 \N 2378 8 +7134 14267 14268 \N 2378 9 +7135 14269 14270 \N 2379 7 +7136 14271 14272 \N 2379 8 +7137 14273 14274 \N 2379 9 +7138 14275 14276 \N 2380 7 +7139 14277 14278 \N 2380 8 +7140 14279 14280 \N 2380 9 +7141 14281 14282 \N 2381 7 +7142 14283 14284 \N 2381 8 +7143 14285 14286 \N 2381 9 +7144 14287 14288 \N 2382 7 +7145 14289 14290 \N 2382 8 +7146 14291 14292 \N 2382 9 +7147 14293 14294 \N 2383 7 +7148 14295 14296 \N 2383 8 +7149 14297 14298 \N 2383 9 +7150 14299 14300 \N 2384 7 +7151 14301 14302 \N 2384 8 +7152 14303 14304 \N 2384 9 +7153 14305 14306 \N 2385 7 +7154 14307 14308 \N 2385 8 +7155 14309 14310 \N 2385 9 +7156 14311 14312 \N 2386 7 +7157 14313 14314 \N 2386 8 +7158 14315 14316 \N 2386 9 +7159 14317 14318 \N 2387 7 +7160 14319 14320 \N 2387 8 +7161 14321 14322 \N 2387 9 +7162 14323 14324 \N 2388 7 +7163 14325 14326 \N 2388 8 +7164 14327 14328 \N 2388 9 +7165 14329 14330 \N 2389 7 +7166 14331 14332 \N 2389 8 +7167 14333 14334 \N 2389 9 +7168 14335 14336 \N 2390 7 +7169 14337 14338 \N 2390 8 +7170 14339 14340 \N 2390 9 +7171 14341 14342 \N 2391 7 +7172 14343 14344 \N 2391 8 +7173 14345 14346 \N 2391 9 +7174 14347 14348 \N 2392 7 +7175 14349 14350 \N 2392 8 +7176 14351 14352 \N 2392 9 +7177 14353 14354 \N 2393 7 +7178 14355 14356 \N 2393 8 +7179 14357 14358 \N 2393 9 +7180 14359 14360 \N 2394 7 +7181 14361 14362 \N 2394 8 +7182 14363 14364 \N 2394 9 +7183 14365 14366 \N 2395 7 +7184 14367 14368 \N 2395 8 +7185 14369 14370 \N 2395 9 +7186 14371 14372 \N 2396 7 +7187 14373 14374 \N 2396 8 +7188 14375 14376 \N 2396 9 +7189 14377 14378 \N 2397 7 +7190 14379 14380 \N 2397 8 +7191 14381 14382 \N 2397 9 +7192 14383 14384 \N 2398 7 +7193 14385 14386 \N 2398 8 +7194 14387 14388 \N 2398 9 +7195 14389 14390 \N 2399 7 +7196 14391 14392 \N 2399 8 +7197 14393 14394 \N 2399 9 +7198 14395 14396 \N 2400 7 +7199 14397 14398 \N 2400 8 +7200 14399 14400 \N 2400 9 +7201 14401 14402 \N 2401 7 +7202 14403 14404 \N 2401 8 +7203 14405 14406 \N 2401 9 +7204 14407 14408 \N 2402 7 +7205 14409 14410 \N 2402 8 +7206 14411 14412 \N 2402 9 +7207 14413 14414 \N 2403 7 +7208 14415 14416 \N 2403 8 +7209 14417 14418 \N 2403 9 +7210 14419 14420 \N 2404 7 +7211 14421 14422 \N 2404 8 +7212 14423 14424 \N 2404 9 +7213 14425 14426 \N 2405 7 +7214 14427 14428 \N 2405 8 +7215 14429 14430 \N 2405 9 +7216 14431 14432 \N 2406 7 +7217 14433 14434 \N 2406 8 +7218 14435 14436 \N 2406 9 +7219 14437 14438 \N 2407 7 +7220 14439 14440 \N 2407 8 +7221 14441 14442 \N 2407 9 +7222 14443 14444 \N 2408 7 +7223 14445 14446 \N 2408 8 +7224 14447 14448 \N 2408 9 +7225 14449 14450 \N 2409 7 +7226 14451 14452 \N 2409 8 +7227 14453 14454 \N 2409 9 +7228 14455 14456 \N 2410 7 +7229 14457 14458 \N 2410 8 +7230 14459 14460 \N 2410 9 +7231 14461 14462 \N 2411 7 +7232 14463 14464 \N 2411 8 +7233 14465 14466 \N 2411 9 +7234 14467 14468 \N 2412 7 +7235 14469 14470 \N 2412 8 +7236 14471 14472 \N 2412 9 +7237 14473 14474 \N 2413 7 +7238 14475 14476 \N 2413 8 +7239 14477 14478 \N 2413 9 +7240 14479 14480 \N 2414 7 +7241 14481 14482 \N 2414 8 +7242 14483 14484 \N 2414 9 +7243 14485 14486 \N 2415 7 +7244 14487 14488 \N 2415 8 +7245 14489 14490 \N 2415 9 +7246 14491 14492 \N 2416 7 +7247 14493 14494 \N 2416 8 +7248 14495 14496 \N 2416 9 +7249 14497 14498 \N 2417 7 +7250 14499 14500 \N 2417 8 +7251 14501 14502 \N 2417 9 +7252 14503 14504 \N 2418 7 +7253 14505 14506 \N 2418 8 +7254 14507 14508 \N 2418 9 +7255 14509 14510 \N 2419 7 +7256 14511 14512 \N 2419 8 +7257 14513 14514 \N 2419 9 +7258 14515 14516 \N 2420 7 +7259 14517 14518 \N 2420 8 +7260 14519 14520 \N 2420 9 +7261 14521 14522 \N 2421 7 +7262 14523 14524 \N 2421 8 +7263 14525 14526 \N 2421 9 +7264 14527 14528 \N 2422 7 +7265 14529 14530 \N 2422 8 +7266 14531 14532 \N 2422 9 +7267 14533 14534 \N 2423 7 +7268 14535 14536 \N 2423 8 +7269 14537 14538 \N 2423 9 +7270 14539 14540 \N 2424 7 +7271 14541 14542 \N 2424 8 +7272 14543 14544 \N 2424 9 +7273 14545 14546 \N 2425 7 +7274 14547 14548 \N 2425 8 +7275 14549 14550 \N 2425 9 +7276 14551 14552 \N 2426 7 +7277 14553 14554 \N 2426 8 +7278 14555 14556 \N 2426 9 +7279 14557 14558 \N 2427 7 +7280 14559 14560 \N 2427 8 +7281 14561 14562 \N 2427 9 +7282 14563 14564 \N 2428 7 +7283 14565 14566 \N 2428 8 +7284 14567 14568 \N 2428 9 +7285 14569 14570 \N 2429 7 +7286 14571 14572 \N 2429 8 +7287 14573 14574 \N 2429 9 +7288 14575 14576 \N 2430 7 +7289 14577 14578 \N 2430 8 +7290 14579 14580 \N 2430 9 +7291 14581 14582 \N 2431 7 +7292 14583 14584 \N 2431 8 +7293 14585 14586 \N 2431 9 +7294 14587 14588 \N 2432 7 +7295 14589 14590 \N 2432 8 +7296 14591 14592 \N 2432 9 +7297 14593 14594 \N 2433 7 +7298 14595 14596 \N 2433 8 +7299 14597 14598 \N 2433 9 +7300 14599 14600 \N 2434 7 +7301 14601 14602 \N 2434 8 +7302 14603 14604 \N 2434 9 +7303 14605 14606 \N 2435 7 +7304 14607 14608 \N 2435 8 +7305 14609 14610 \N 2435 9 +7306 14611 14612 \N 2436 7 +7307 14613 14614 \N 2436 8 +7308 14615 14616 \N 2436 9 +7309 14617 14618 \N 2437 7 +7310 14619 14620 \N 2437 8 +7311 14621 14622 \N 2437 9 +7312 14623 14624 \N 2438 7 +7313 14625 14626 \N 2438 8 +7314 14627 14628 \N 2438 9 +7315 14629 14630 \N 2439 7 +7316 14631 14632 \N 2439 8 +7317 14633 14634 \N 2439 9 +7318 14635 14636 \N 2440 7 +7319 14637 14638 \N 2440 8 +7320 14639 14640 \N 2440 9 +7321 14641 14642 \N 2441 7 +7322 14643 14644 \N 2441 8 +7323 14645 14646 \N 2441 9 +7324 14647 14648 \N 2442 7 +7325 14649 14650 \N 2442 8 +7326 14651 14652 \N 2442 9 +7327 14653 14654 \N 2443 7 +7328 14655 14656 \N 2443 8 +7329 14657 14658 \N 2443 9 +7330 14659 14660 \N 2444 7 +7331 14661 14662 \N 2444 8 +7332 14663 14664 \N 2444 9 +7333 14665 14666 \N 2445 7 +7334 14667 14668 \N 2445 8 +7335 14669 14670 \N 2445 9 +7336 14671 14672 \N 2446 7 +7337 14673 14674 \N 2446 8 +7338 14675 14676 \N 2446 9 +7339 14677 14678 \N 2447 7 +7340 14679 14680 \N 2447 8 +7341 14681 14682 \N 2447 9 +7342 14683 14684 \N 2448 7 +7343 14685 14686 \N 2448 8 +7344 14687 14688 \N 2448 9 +7345 14689 14690 \N 2449 7 +7346 14691 14692 \N 2449 8 +7347 14693 14694 \N 2449 9 +7348 14695 14696 \N 2450 7 +7349 14697 14698 \N 2450 8 +7350 14699 14700 \N 2450 9 +7351 14701 14702 \N 2451 7 +7352 14703 14704 \N 2451 8 +7353 14705 14706 \N 2451 9 +7354 14707 14708 \N 2452 7 +7355 14709 14710 \N 2452 8 +7356 14711 14712 \N 2452 9 +7357 14713 14714 \N 2453 7 +7358 14715 14716 \N 2453 8 +7359 14717 14718 \N 2453 9 +7360 14719 14720 \N 2454 7 +7361 14721 14722 \N 2454 8 +7362 14723 14724 \N 2454 9 +7363 14725 14726 \N 2455 7 +7364 14727 14728 \N 2455 8 +7365 14729 14730 \N 2455 9 +7366 14731 14732 \N 2456 7 +7367 14733 14734 \N 2456 8 +7368 14735 14736 \N 2456 9 +7369 14737 14738 \N 2457 7 +7370 14739 14740 \N 2457 8 +7371 14741 14742 \N 2457 9 +7372 14743 14744 \N 2458 7 +7373 14745 14746 \N 2458 8 +7374 14747 14748 \N 2458 9 +7375 14749 14750 \N 2459 7 +7376 14751 14752 \N 2459 8 +7377 14753 14754 \N 2459 9 +7378 14755 14756 \N 2460 7 +7379 14757 14758 \N 2460 8 +7380 14759 14760 \N 2460 9 +7381 14761 14762 \N 2461 7 +7382 14763 14764 \N 2461 8 +7383 14765 14766 \N 2461 9 +7384 14767 14768 \N 2462 7 +7385 14769 14770 \N 2462 8 +7386 14771 14772 \N 2462 9 +7387 14773 14774 \N 2463 7 +7388 14775 14776 \N 2463 8 +7389 14777 14778 \N 2463 9 +7390 14779 14780 \N 2464 7 +7391 14781 14782 \N 2464 8 +7392 14783 14784 \N 2464 9 +7393 14785 14786 \N 2465 7 +7394 14787 14788 \N 2465 8 +7395 14789 14790 \N 2465 9 +7396 14791 14792 \N 2466 7 +7397 14793 14794 \N 2466 8 +7398 14795 14796 \N 2466 9 +7399 14797 14798 \N 2467 7 +7400 14799 14800 \N 2467 8 +7401 14801 14802 \N 2467 9 +7402 14803 14804 \N 2468 7 +7403 14805 14806 \N 2468 8 +7404 14807 14808 \N 2468 9 +7405 14809 14810 \N 2469 7 +7406 14811 14812 \N 2469 8 +7407 14813 14814 \N 2469 9 +7408 14815 14816 \N 2470 7 +7409 14817 14818 \N 2470 8 +7410 14819 14820 \N 2470 9 +7411 14821 14822 \N 2471 7 +7412 14823 14824 \N 2471 8 +7413 14825 14826 \N 2471 9 +7414 14827 14828 \N 2472 7 +7415 14829 14830 \N 2472 8 +7416 14831 14832 \N 2472 9 +7417 14833 14834 \N 2473 7 +7418 14835 14836 \N 2473 8 +7419 14837 14838 \N 2473 9 +7420 14839 14840 \N 2474 7 +7421 14841 14842 \N 2474 8 +7422 14843 14844 \N 2474 9 +7423 14845 14846 \N 2475 7 +7424 14847 14848 \N 2475 8 +7425 14849 14850 \N 2475 9 +7426 14851 14852 \N 2476 7 +7427 14853 14854 \N 2476 8 +7428 14855 14856 \N 2476 9 +7429 14857 14858 \N 2477 7 +7430 14859 14860 \N 2477 8 +7431 14861 14862 \N 2477 9 +7432 14863 14864 \N 2478 7 +7433 14865 14866 \N 2478 8 +7434 14867 14868 \N 2478 9 +7435 14869 14870 \N 2479 7 +7436 14871 14872 \N 2479 8 +7437 14873 14874 \N 2479 9 +7438 14875 14876 \N 2480 7 +7439 14877 14878 \N 2480 8 +7440 14879 14880 \N 2480 9 +7441 14881 14882 \N 2481 7 +7442 14883 14884 \N 2481 8 +7443 14885 14886 \N 2481 9 +7444 14887 14888 \N 2482 7 +7445 14889 14890 \N 2482 8 +7446 14891 14892 \N 2482 9 +7447 14893 14894 \N 2483 7 +7448 14895 14896 \N 2483 8 +7449 14897 14898 \N 2483 9 +7450 14899 14900 \N 2484 7 +7451 14901 14902 \N 2484 8 +7452 14903 14904 \N 2484 9 +7453 14905 14906 \N 2485 7 +7454 14907 14908 \N 2485 8 +7455 14909 14910 \N 2485 9 +7456 14911 14912 \N 2486 7 +7457 14913 14914 \N 2486 8 +7458 14915 14916 \N 2486 9 +7459 14917 14918 \N 2487 7 +7460 14919 14920 \N 2487 8 +7461 14921 14922 \N 2487 9 +7462 14923 14924 \N 2488 7 +7463 14925 14926 \N 2488 8 +7464 14927 14928 \N 2488 9 +7465 14929 14930 \N 2489 7 +7466 14931 14932 \N 2489 8 +7467 14933 14934 \N 2489 9 +7468 14935 14936 \N 2490 7 +7469 14937 14938 \N 2490 8 +7470 14939 14940 \N 2490 9 +7471 14941 14942 \N 2491 7 +7472 14943 14944 \N 2491 8 +7473 14945 14946 \N 2491 9 +7474 14947 14948 \N 2492 7 +7475 14949 14950 \N 2492 8 +7476 14951 14952 \N 2492 9 +7477 14953 14954 \N 2493 7 +7478 14955 14956 \N 2493 8 +7479 14957 14958 \N 2493 9 +7480 14959 14960 \N 2494 7 +7481 14961 14962 \N 2494 8 +7482 14963 14964 \N 2494 9 +7483 14965 14966 \N 2495 7 +7484 14967 14968 \N 2495 8 +7485 14969 14970 \N 2495 9 +7486 14971 14972 \N 2496 7 +7487 14973 14974 \N 2496 8 +7488 14975 14976 \N 2496 9 +7489 14977 14978 \N 2497 7 +7490 14979 14980 \N 2497 8 +7491 14981 14982 \N 2497 9 +7492 14983 14984 \N 2498 7 +7493 14985 14986 \N 2498 8 +7494 14987 14988 \N 2498 9 +7495 14989 14990 \N 2499 7 +7496 14991 14992 \N 2499 8 +7497 14993 14994 \N 2499 9 +7498 14995 14996 \N 2500 7 +7499 14997 14998 \N 2500 8 +7500 14999 15000 \N 2500 9 +7501 15001 15002 \N 2501 7 +7502 15003 15004 \N 2501 8 +7503 15005 15006 \N 2501 9 +7504 15007 15008 \N 2502 7 +7505 15009 15010 \N 2502 8 +7506 15011 15012 \N 2502 9 +7507 15013 15014 \N 2503 7 +7508 15015 15016 \N 2503 8 +7509 15017 15018 \N 2503 9 +7510 15019 15020 \N 2504 7 +7511 15021 15022 \N 2504 8 +7512 15023 15024 \N 2504 9 +7513 15025 15026 \N 2505 7 +7514 15027 15028 \N 2505 8 +7515 15029 15030 \N 2505 9 +7516 15031 15032 \N 2506 7 +7517 15033 15034 \N 2506 8 +7518 15035 15036 \N 2506 9 +7519 15037 15038 \N 2507 7 +7520 15039 15040 \N 2507 8 +7521 15041 15042 \N 2507 9 +7522 15043 15044 \N 2508 7 +7523 15045 15046 \N 2508 8 +7524 15047 15048 \N 2508 9 +7525 15049 15050 \N 2509 7 +7526 15051 15052 \N 2509 8 +7527 15053 15054 \N 2509 9 +7528 15055 15056 \N 2510 7 +7529 15057 15058 \N 2510 8 +7530 15059 15060 \N 2510 9 +7531 15061 15062 \N 2511 7 +7532 15063 15064 \N 2511 8 +7533 15065 15066 \N 2511 9 +7534 15067 15068 \N 2512 7 +7535 15069 15070 \N 2512 8 +7536 15071 15072 \N 2512 9 +7537 15073 15074 \N 2513 7 +7538 15075 15076 \N 2513 8 +7539 15077 15078 \N 2513 9 +7540 15079 15080 \N 2514 7 +7541 15081 15082 \N 2514 8 +7542 15083 15084 \N 2514 9 +7543 15085 15086 \N 2515 7 +7544 15087 15088 \N 2515 8 +7545 15089 15090 \N 2515 9 +7546 15091 15092 \N 2516 7 +7547 15093 15094 \N 2516 8 +7548 15095 15096 \N 2516 9 +7549 15097 15098 \N 2517 7 +7550 15099 15100 \N 2517 8 +7551 15101 15102 \N 2517 9 +7552 15103 15104 \N 2518 7 +7553 15105 15106 \N 2518 8 +7554 15107 15108 \N 2518 9 +7555 15109 15110 \N 2519 7 +7556 15111 15112 \N 2519 8 +7557 15113 15114 \N 2519 9 +7558 15115 15116 \N 2520 7 +7559 15117 15118 \N 2520 8 +7560 15119 15120 \N 2520 9 +7561 15121 15122 \N 2521 7 +7562 15123 15124 \N 2521 8 +7563 15125 15126 \N 2521 9 +7564 15127 15128 \N 2522 7 +7565 15129 15130 \N 2522 8 +7566 15131 15132 \N 2522 9 +7567 15133 15134 \N 2523 7 +7568 15135 15136 \N 2523 8 +7569 15137 15138 \N 2523 9 +7570 15139 15140 \N 2524 7 +7571 15141 15142 \N 2524 8 +7572 15143 15144 \N 2524 9 +7573 15145 15146 \N 2525 7 +7574 15147 15148 \N 2525 8 +7575 15149 15150 \N 2525 9 +7576 15151 15152 \N 2526 7 +7577 15153 15154 \N 2526 8 +7578 15155 15156 \N 2526 9 +7579 15157 15158 \N 2527 7 +7580 15159 15160 \N 2527 8 +7581 15161 15162 \N 2527 9 +7582 15163 15164 \N 2528 7 +7583 15165 15166 \N 2528 8 +7584 15167 15168 \N 2528 9 +7585 15169 15170 \N 2529 7 +7586 15171 15172 \N 2529 8 +7587 15173 15174 \N 2529 9 +7588 15175 15176 \N 2530 7 +7589 15177 15178 \N 2530 8 +7590 15179 15180 \N 2530 9 +7591 15181 15182 \N 2531 7 +7592 15183 15184 \N 2531 8 +7593 15185 15186 \N 2531 9 +7594 15187 15188 \N 2532 7 +7595 15189 15190 \N 2532 8 +7596 15191 15192 \N 2532 9 +7597 15193 15194 \N 2533 7 +7598 15195 15196 \N 2533 8 +7599 15197 15198 \N 2533 9 +7600 15199 15200 \N 2534 7 +7601 15201 15202 \N 2534 8 +7602 15203 15204 \N 2534 9 +7603 15205 15206 \N 2535 7 +7604 15207 15208 \N 2535 8 +7605 15209 15210 \N 2535 9 +7606 15211 15212 \N 2536 7 +7607 15213 15214 \N 2536 8 +7608 15215 15216 \N 2536 9 +7609 15217 15218 \N 2537 7 +7610 15219 15220 \N 2537 8 +7611 15221 15222 \N 2537 9 +7612 15223 15224 \N 2538 7 +7613 15225 15226 \N 2538 8 +7614 15227 15228 \N 2538 9 +7615 15229 15230 \N 2539 7 +7616 15231 15232 \N 2539 8 +7617 15233 15234 \N 2539 9 +7618 15235 15236 \N 2540 7 +7619 15237 15238 \N 2540 8 +7620 15239 15240 \N 2540 9 +7621 15241 15242 \N 2541 7 +7622 15243 15244 \N 2541 8 +7623 15245 15246 \N 2541 9 +7624 15247 15248 \N 2542 7 +7625 15249 15250 \N 2542 8 +7626 15251 15252 \N 2542 9 +7627 15253 15254 \N 2543 7 +7628 15255 15256 \N 2543 8 +7629 15257 15258 \N 2543 9 +7630 15259 15260 \N 2544 7 +7631 15261 15262 \N 2544 8 +7632 15263 15264 \N 2544 9 +7633 15265 15266 \N 2545 7 +7634 15267 15268 \N 2545 8 +7635 15269 15270 \N 2545 9 +7636 15271 15272 \N 2546 7 +7637 15273 15274 \N 2546 8 +7638 15275 15276 \N 2546 9 +7639 15277 15278 \N 2547 7 +7640 15279 15280 \N 2547 8 +7641 15281 15282 \N 2547 9 +7642 15283 15284 \N 2548 7 +7643 15285 15286 \N 2548 8 +7644 15287 15288 \N 2548 9 +7645 15289 15290 \N 2549 7 +7646 15291 15292 \N 2549 8 +7647 15293 15294 \N 2549 9 +7648 15295 15296 \N 2550 7 +7649 15297 15298 \N 2550 8 +7650 15299 15300 \N 2550 9 +7651 15301 15302 \N 2551 7 +7652 15303 15304 \N 2551 8 +7653 15305 15306 \N 2551 9 +7654 15307 15308 \N 2552 7 +7655 15309 15310 \N 2552 8 +7656 15311 15312 \N 2552 9 +7657 15313 15314 \N 2553 7 +7658 15315 15316 \N 2553 8 +7659 15317 15318 \N 2553 9 +7660 15319 15320 \N 2554 7 +7661 15321 15322 \N 2554 8 +7662 15323 15324 \N 2554 9 +7663 15325 15326 \N 2555 7 +7664 15327 15328 \N 2555 8 +7665 15329 15330 \N 2555 9 +7666 15331 15332 \N 2556 7 +7667 15333 15334 \N 2556 8 +7668 15335 15336 \N 2556 9 +7669 15337 15338 \N 2557 7 +7670 15339 15340 \N 2557 8 +7671 15341 15342 \N 2557 9 +7672 15343 15344 \N 2558 7 +7673 15345 15346 \N 2558 8 +7674 15347 15348 \N 2558 9 +7675 15349 15350 \N 2559 7 +7676 15351 15352 \N 2559 8 +7677 15353 15354 \N 2559 9 +7678 15355 15356 \N 2560 7 +7679 15357 15358 \N 2560 8 +7680 15359 15360 \N 2560 9 +7681 15361 15362 \N 2561 7 +7682 15363 15364 \N 2561 8 +7683 15365 15366 \N 2561 9 +7684 15367 15368 \N 2562 7 +7685 15369 15370 \N 2562 8 +7686 15371 15372 \N 2562 9 +7687 15373 15374 \N 2563 7 +7688 15375 15376 \N 2563 8 +7689 15377 15378 \N 2563 9 +7690 15379 15380 \N 2564 7 +7691 15381 15382 \N 2564 8 +7692 15383 15384 \N 2564 9 +7693 15385 15386 \N 2565 7 +7694 15387 15388 \N 2565 8 +7695 15389 15390 \N 2565 9 +7696 15391 15392 \N 2566 7 +7697 15393 15394 \N 2566 8 +7698 15395 15396 \N 2566 9 +7699 15397 15398 \N 2567 7 +7700 15399 15400 \N 2567 8 +7701 15401 15402 \N 2567 9 +7702 15403 15404 \N 2568 7 +7703 15405 15406 \N 2568 8 +7704 15407 15408 \N 2568 9 +7705 15409 15410 \N 2569 7 +7706 15411 15412 \N 2569 8 +7707 15413 15414 \N 2569 9 +7708 15415 15416 \N 2570 7 +7709 15417 15418 \N 2570 8 +7710 15419 15420 \N 2570 9 +7711 15421 15422 \N 2571 7 +7712 15423 15424 \N 2571 8 +7713 15425 15426 \N 2571 9 +7714 15427 15428 \N 2572 7 +7715 15429 15430 \N 2572 8 +7716 15431 15432 \N 2572 9 +7717 15433 15434 \N 2573 7 +7718 15435 15436 \N 2573 8 +7719 15437 15438 \N 2573 9 +7720 15439 15440 \N 2574 7 +7721 15441 15442 \N 2574 8 +7722 15443 15444 \N 2574 9 +7723 15445 15446 \N 2575 7 +7724 15447 15448 \N 2575 8 +7725 15449 15450 \N 2575 9 +7726 15451 15452 \N 2576 7 +7727 15453 15454 \N 2576 8 +7728 15455 15456 \N 2576 9 +7729 15457 15458 \N 2577 7 +7730 15459 15460 \N 2577 8 +7731 15461 15462 \N 2577 9 +7732 15463 15464 \N 2578 7 +7733 15465 15466 \N 2578 8 +7734 15467 15468 \N 2578 9 +7735 15469 15470 \N 2579 7 +7736 15471 15472 \N 2579 8 +7737 15473 15474 \N 2579 9 +7738 15475 15476 \N 2580 7 +7739 15477 15478 \N 2580 8 +7740 15479 15480 \N 2580 9 +7741 15481 15482 \N 2581 7 +7742 15483 15484 \N 2581 8 +7743 15485 15486 \N 2581 9 +7744 15487 15488 \N 2582 7 +7745 15489 15490 \N 2582 8 +7746 15491 15492 \N 2582 9 +7747 15493 15494 \N 2583 7 +7748 15495 15496 \N 2583 8 +7749 15497 15498 \N 2583 9 +7750 15499 15500 \N 2584 7 +7751 15501 15502 \N 2584 8 +7752 15503 15504 \N 2584 9 +7753 15505 15506 \N 2585 7 +7754 15507 15508 \N 2585 8 +7755 15509 15510 \N 2585 9 +7756 15511 15512 \N 2586 7 +7757 15513 15514 \N 2586 8 +7758 15515 15516 \N 2586 9 +7759 15517 15518 \N 2587 7 +7760 15519 15520 \N 2587 8 +7761 15521 15522 \N 2587 9 +7762 15523 15524 \N 2588 7 +7763 15525 15526 \N 2588 8 +7764 15527 15528 \N 2588 9 +7765 15529 15530 \N 2589 7 +7766 15531 15532 \N 2589 8 +7767 15533 15534 \N 2589 9 +7768 15535 15536 \N 2590 7 +7769 15537 15538 \N 2590 8 +7770 15539 15540 \N 2590 9 +7771 15541 15542 \N 2591 7 +7772 15543 15544 \N 2591 8 +7773 15545 15546 \N 2591 9 +7774 15547 15548 \N 2592 7 +7775 15549 15550 \N 2592 8 +7776 15551 15552 \N 2592 9 +8641 16417 \N \N 3457 11 +8642 16418 \N \N 3458 11 +8643 16419 \N \N 3459 11 +8644 16420 \N \N 3460 11 +8645 16421 \N \N 3461 11 +8646 16422 \N \N 3462 11 +8647 16423 \N \N 3463 11 +8648 16424 \N \N 3464 11 +8649 16425 \N \N 3465 11 +8650 16426 \N \N 3466 11 +8651 16427 \N \N 3467 11 +8652 16428 \N \N 3468 11 +8653 16429 \N \N 3469 11 +8654 16430 \N \N 3470 11 +8655 16431 \N \N 3471 11 +8656 16432 \N \N 3472 11 +8657 16433 \N \N 3473 11 +8658 16434 \N \N 3474 11 +8659 16435 \N \N 3475 11 +8660 16436 \N \N 3476 11 +8661 16437 \N \N 3477 11 +8662 16438 \N \N 3478 11 +8663 16439 \N \N 3479 11 +8664 16440 \N \N 3480 11 +8665 16441 \N \N 3481 11 +8666 16442 \N \N 3482 11 +8667 16443 \N \N 3483 11 +8668 16444 \N \N 3484 11 +8669 16445 \N \N 3485 11 +8670 16446 \N \N 3486 11 +8671 16447 \N \N 3487 11 +8672 16448 \N \N 3488 11 +8673 16449 \N \N 3489 11 +8674 16450 \N \N 3490 11 +8675 16451 \N \N 3491 11 +8676 16452 \N \N 3492 11 +8677 16453 \N \N 3493 11 +8678 16454 \N \N 3494 11 +8679 16455 \N \N 3495 11 +8680 16456 \N \N 3496 11 +8681 16457 \N \N 3497 11 +8682 16458 \N \N 3498 11 +8683 16459 \N \N 3499 11 +8684 16460 \N \N 3500 11 +8685 16461 \N \N 3501 11 +8686 16462 \N \N 3502 11 +8687 16463 \N \N 3503 11 +8688 16464 \N \N 3504 11 +8689 16465 \N \N 3505 11 +8690 16466 \N \N 3506 11 +8691 16467 \N \N 3507 11 +8692 16468 \N \N 3508 11 +8693 16469 \N \N 3509 11 +8694 16470 \N \N 3510 11 +8695 16471 \N \N 3511 11 +8696 16472 \N \N 3512 11 +8697 16473 \N \N 3513 11 +8698 16474 \N \N 3514 11 +8699 16475 \N \N 3515 11 +8700 16476 \N \N 3516 11 +8701 16477 \N \N 3517 11 +8702 16478 \N \N 3518 11 +8703 16479 \N \N 3519 11 +8704 16480 \N \N 3520 11 +8705 16481 \N \N 3521 11 +8706 16482 \N \N 3522 11 +8707 16483 \N \N 3523 11 +8708 16484 \N \N 3524 11 +8709 16485 \N \N 3525 11 +8710 16486 \N \N 3526 11 +8711 16487 \N \N 3527 11 +8712 16488 \N \N 3528 11 +8713 16489 \N \N 3529 11 +8714 16490 \N \N 3530 11 +8715 16491 \N \N 3531 11 +8716 16492 \N \N 3532 11 +8717 16493 \N \N 3533 11 +8718 16494 \N \N 3534 11 +8719 16495 \N \N 3535 11 +8720 16496 \N \N 3536 11 +8721 16497 \N \N 3537 11 +8722 16498 \N \N 3538 11 +8723 16499 \N \N 3539 11 +8724 16500 \N \N 3540 11 +8725 16501 \N \N 3541 11 +8726 16502 \N \N 3542 11 +8727 16503 \N \N 3543 11 +8728 16504 \N \N 3544 11 +8729 16505 \N \N 3545 11 +8730 16506 \N \N 3546 11 +8731 16507 \N \N 3547 11 +8732 16508 \N \N 3548 11 +8733 16509 \N \N 3549 11 +8734 16510 \N \N 3550 11 +8735 16511 \N \N 3551 11 +8736 16512 \N \N 3552 11 +8737 16513 \N \N 3553 11 +8738 16514 \N \N 3554 11 +8739 16515 \N \N 3555 11 +8740 16516 \N \N 3556 11 +8741 16517 \N \N 3557 11 +8742 16518 \N \N 3558 11 +8743 16519 \N \N 3559 11 +8744 16520 \N \N 3560 11 +8745 16521 \N \N 3561 11 +8746 16522 \N \N 3562 11 +8747 16523 \N \N 3563 11 +8748 16524 \N \N 3564 11 +8749 16525 \N \N 3565 11 +8750 16526 \N \N 3566 11 +8751 16527 \N \N 3567 11 +8752 16528 \N \N 3568 11 +8753 16529 \N \N 3569 11 +8754 16530 \N \N 3570 11 +8755 16531 \N \N 3571 11 +8756 16532 \N \N 3572 11 +8757 16533 \N \N 3573 11 +8758 16534 \N \N 3574 11 +8759 16535 \N \N 3575 11 +8760 16536 \N \N 3576 11 +8761 16537 \N \N 3577 11 +8762 16538 \N \N 3578 11 +8763 16539 \N \N 3579 11 +8764 16540 \N \N 3580 11 +8765 16541 \N \N 3581 11 +8766 16542 \N \N 3582 11 +8767 16543 \N \N 3583 11 +8768 16544 \N \N 3584 11 +8769 16545 \N \N 3585 11 +8770 16546 \N \N 3586 11 +8771 16547 \N \N 3587 11 +8772 16548 \N \N 3588 11 +8773 16549 \N \N 3589 11 +8774 16550 \N \N 3590 11 +8775 16551 \N \N 3591 11 +8776 16552 \N \N 3592 11 +8777 16553 \N \N 3593 11 +8778 16554 \N \N 3594 11 +8779 16555 \N \N 3595 11 +8780 16556 \N \N 3596 11 +8781 16557 \N \N 3597 11 +8782 16558 \N \N 3598 11 +8783 16559 \N \N 3599 11 +8784 16560 \N \N 3600 11 +8785 16561 \N \N 3601 11 +8786 16562 \N \N 3602 11 +8787 16563 \N \N 3603 11 +8788 16564 \N \N 3604 11 +8789 16565 \N \N 3605 11 +8790 16566 \N \N 3606 11 +8791 16567 \N \N 3607 11 +8792 16568 \N \N 3608 11 +8793 16569 \N \N 3609 11 +8794 16570 \N \N 3610 11 +8795 16571 \N \N 3611 11 +8796 16572 \N \N 3612 11 +8797 16573 \N \N 3613 11 +8798 16574 \N \N 3614 11 +8799 16575 \N \N 3615 11 +8800 16576 \N \N 3616 11 +8801 16577 \N \N 3617 11 +8802 16578 \N \N 3618 11 +8803 16579 \N \N 3619 11 +8804 16580 \N \N 3620 11 +8805 16581 \N \N 3621 11 +8806 16582 \N \N 3622 11 +8807 16583 \N \N 3623 11 +8808 16584 \N \N 3624 11 +8809 16585 \N \N 3625 11 +8810 16586 \N \N 3626 11 +8811 16587 \N \N 3627 11 +8812 16588 \N \N 3628 11 +8813 16589 \N \N 3629 11 +8814 16590 \N \N 3630 11 +8815 16591 \N \N 3631 11 +8816 16592 \N \N 3632 11 +8817 16593 \N \N 3633 11 +8818 16594 \N \N 3634 11 +8819 16595 \N \N 3635 11 +8820 16596 \N \N 3636 11 +8821 16597 \N \N 3637 11 +8822 16598 \N \N 3638 11 +8823 16599 \N \N 3639 11 +8824 16600 \N \N 3640 11 +8825 16601 \N \N 3641 11 +8826 16602 \N \N 3642 11 +8827 16603 \N \N 3643 11 +8828 16604 \N \N 3644 11 +8829 16605 \N \N 3645 11 +8830 16606 \N \N 3646 11 +8831 16607 \N \N 3647 11 +8832 16608 \N \N 3648 11 +8833 16609 \N \N 3649 11 +8834 16610 \N \N 3650 11 +8835 16611 \N \N 3651 11 +8836 16612 \N \N 3652 11 +8837 16613 \N \N 3653 11 +8838 16614 \N \N 3654 11 +8839 16615 \N \N 3655 11 +8840 16616 \N \N 3656 11 +8841 16617 \N \N 3657 11 +8842 16618 \N \N 3658 11 +8843 16619 \N \N 3659 11 +8844 16620 \N \N 3660 11 +8845 16621 \N \N 3661 11 +8846 16622 \N \N 3662 11 +8847 16623 \N \N 3663 11 +8848 16624 \N \N 3664 11 +8849 16625 \N \N 3665 11 +8850 16626 \N \N 3666 11 +8851 16627 \N \N 3667 11 +8852 16628 \N \N 3668 11 +8853 16629 \N \N 3669 11 +8854 16630 \N \N 3670 11 +8855 16631 \N \N 3671 11 +8856 16632 \N \N 3672 11 +8857 16633 \N \N 3673 11 +8858 16634 \N \N 3674 11 +8859 16635 \N \N 3675 11 +8860 16636 \N \N 3676 11 +8861 16637 \N \N 3677 11 +8862 16638 \N \N 3678 11 +8863 16639 \N \N 3679 11 +8864 16640 \N \N 3680 11 +8865 16641 \N \N 3681 11 +8866 16642 \N \N 3682 11 +8867 16643 \N \N 3683 11 +8868 16644 \N \N 3684 11 +8869 16645 \N \N 3685 11 +8870 16646 \N \N 3686 11 +8871 16647 \N \N 3687 11 +8872 16648 \N \N 3688 11 +8873 16649 \N \N 3689 11 +8874 16650 \N \N 3690 11 +8875 16651 \N \N 3691 11 +8876 16652 \N \N 3692 11 +8877 16653 \N \N 3693 11 +8878 16654 \N \N 3694 11 +8879 16655 \N \N 3695 11 +8880 16656 \N \N 3696 11 +8881 16657 \N \N 3697 11 +8882 16658 \N \N 3698 11 +8883 16659 \N \N 3699 11 +8884 16660 \N \N 3700 11 +8885 16661 \N \N 3701 11 +8886 16662 \N \N 3702 11 +8887 16663 \N \N 3703 11 +8888 16664 \N \N 3704 11 +8889 16665 \N \N 3705 11 +8890 16666 \N \N 3706 11 +8891 16667 \N \N 3707 11 +8892 16668 \N \N 3708 11 +8893 16669 \N \N 3709 11 +8894 16670 \N \N 3710 11 +8895 16671 \N \N 3711 11 +8896 16672 \N \N 3712 11 +8897 16673 \N \N 3713 11 +8898 16674 \N \N 3714 11 +8899 16675 \N \N 3715 11 +8900 16676 \N \N 3716 11 +8901 16677 \N \N 3717 11 +8902 16678 \N \N 3718 11 +8903 16679 \N \N 3719 11 +8904 16680 \N \N 3720 11 +8905 16681 \N \N 3721 11 +8906 16682 \N \N 3722 11 +8907 16683 \N \N 3723 11 +8908 16684 \N \N 3724 11 +8909 16685 \N \N 3725 11 +8910 16686 \N \N 3726 11 +8911 16687 \N \N 3727 11 +8912 16688 \N \N 3728 11 +8913 16689 \N \N 3729 11 +8914 16690 \N \N 3730 11 +8915 16691 \N \N 3731 11 +8916 16692 \N \N 3732 11 +8917 16693 \N \N 3733 11 +8918 16694 \N \N 3734 11 +8919 16695 \N \N 3735 11 +8920 16696 \N \N 3736 11 +8921 16697 \N \N 3737 11 +8922 16698 \N \N 3738 11 +8923 16699 \N \N 3739 11 +8924 16700 \N \N 3740 11 +8925 16701 \N \N 3741 11 +8926 16702 \N \N 3742 11 +8927 16703 \N \N 3743 11 +8928 16704 \N \N 3744 11 +8929 16705 \N \N 3745 11 +8930 16706 \N \N 3746 11 +8931 16707 \N \N 3747 11 +8932 16708 \N \N 3748 11 +8933 16709 \N \N 3749 11 +8934 16710 \N \N 3750 11 +8935 16711 \N \N 3751 11 +8936 16712 \N \N 3752 11 +8937 16713 \N \N 3753 11 +8938 16714 \N \N 3754 11 +8939 16715 \N \N 3755 11 +8940 16716 \N \N 3756 11 +8941 16717 \N \N 3757 11 +8942 16718 \N \N 3758 11 +8943 16719 \N \N 3759 11 +8944 16720 \N \N 3760 11 +8945 16721 \N \N 3761 11 +8946 16722 \N \N 3762 11 +8947 16723 \N \N 3763 11 +8948 16724 \N \N 3764 11 +8949 16725 \N \N 3765 11 +8950 16726 \N \N 3766 11 +8951 16727 \N \N 3767 11 +8952 16728 \N \N 3768 11 +8953 16729 \N \N 3769 11 +8954 16730 \N \N 3770 11 +8955 16731 \N \N 3771 11 +8956 16732 \N \N 3772 11 +8957 16733 \N \N 3773 11 +8958 16734 \N \N 3774 11 +8959 16735 \N \N 3775 11 +8960 16736 \N \N 3776 11 +8961 16737 \N \N 3777 11 +8962 16738 \N \N 3778 11 +8963 16739 \N \N 3779 11 +8964 16740 \N \N 3780 11 +8965 16741 \N \N 3781 11 +8966 16742 \N \N 3782 11 +8967 16743 \N \N 3783 11 +8968 16744 \N \N 3784 11 +8969 16745 \N \N 3785 11 +8970 16746 \N \N 3786 11 +8971 16747 \N \N 3787 11 +8972 16748 \N \N 3788 11 +8973 16749 \N \N 3789 11 +8974 16750 \N \N 3790 11 +8975 16751 \N \N 3791 11 +8976 16752 \N \N 3792 11 +8977 16753 \N \N 3793 11 +8978 16754 \N \N 3794 11 +8979 16755 \N \N 3795 11 +8980 16756 \N \N 3796 11 +8981 16757 \N \N 3797 11 +8982 16758 \N \N 3798 11 +8983 16759 \N \N 3799 11 +8984 16760 \N \N 3800 11 +8985 16761 \N \N 3801 11 +8986 16762 \N \N 3802 11 +8987 16763 \N \N 3803 11 +8988 16764 \N \N 3804 11 +8989 16765 \N \N 3805 11 +8990 16766 \N \N 3806 11 +8991 16767 \N \N 3807 11 +8992 16768 \N \N 3808 11 +8993 16769 \N \N 3809 11 +8994 16770 \N \N 3810 11 +8995 16771 \N \N 3811 11 +8996 16772 \N \N 3812 11 +8997 16773 \N \N 3813 11 +8998 16774 \N \N 3814 11 +8999 16775 \N \N 3815 11 +9000 16776 \N \N 3816 11 +9001 16777 \N \N 3817 11 +9002 16778 \N \N 3818 11 +9003 16779 \N \N 3819 11 +9004 16780 \N \N 3820 11 +9005 16781 \N \N 3821 11 +9006 16782 \N \N 3822 11 +9007 16783 \N \N 3823 11 +9008 16784 \N \N 3824 11 +9009 16785 \N \N 3825 11 +9010 16786 \N \N 3826 11 +9011 16787 \N \N 3827 11 +9012 16788 \N \N 3828 11 +9013 16789 \N \N 3829 11 +9014 16790 \N \N 3830 11 +9015 16791 \N \N 3831 11 +9016 16792 \N \N 3832 11 +9017 16793 \N \N 3833 11 +9018 16794 \N \N 3834 11 +9019 16795 \N \N 3835 11 +9020 16796 \N \N 3836 11 +9021 16797 \N \N 3837 11 +9022 16798 \N \N 3838 11 +9023 16799 \N \N 3839 11 +9024 16800 \N \N 3840 11 +9025 16801 \N \N 3841 11 +9026 16802 \N \N 3842 11 +9027 16803 \N \N 3843 11 +9028 16804 \N \N 3844 11 +9029 16805 \N \N 3845 11 +9030 16806 \N \N 3846 11 +9031 16807 \N \N 3847 11 +9032 16808 \N \N 3848 11 +9033 16809 \N \N 3849 11 +9034 16810 \N \N 3850 11 +9035 16811 \N \N 3851 11 +9036 16812 \N \N 3852 11 +9037 16813 \N \N 3853 11 +9038 16814 \N \N 3854 11 +9039 16815 \N \N 3855 11 +9040 16816 \N \N 3856 11 +9041 16817 \N \N 3857 11 +9042 16818 \N \N 3858 11 +9043 16819 \N \N 3859 11 +9044 16820 \N \N 3860 11 +9045 16821 \N \N 3861 11 +9046 16822 \N \N 3862 11 +9047 16823 \N \N 3863 11 +9048 16824 \N \N 3864 11 +9049 16825 \N \N 3865 11 +9050 16826 \N \N 3866 11 +9051 16827 \N \N 3867 11 +9052 16828 \N \N 3868 11 +9053 16829 \N \N 3869 11 +9054 16830 \N \N 3870 11 +9055 16831 \N \N 3871 11 +9056 16832 \N \N 3872 11 +9057 16833 \N \N 3873 11 +9058 16834 \N \N 3874 11 +9059 16835 \N \N 3875 11 +9060 16836 \N \N 3876 11 +9061 16837 \N \N 3877 11 +9062 16838 \N \N 3878 11 +9063 16839 \N \N 3879 11 +9064 16840 \N \N 3880 11 +9065 16841 \N \N 3881 11 +9066 16842 \N \N 3882 11 +9067 16843 \N \N 3883 11 +9068 16844 \N \N 3884 11 +9069 16845 \N \N 3885 11 +9070 16846 \N \N 3886 11 +9071 16847 \N \N 3887 11 +9072 16848 \N \N 3888 11 +9073 16849 \N \N 3889 11 +9074 16850 \N \N 3890 11 +9075 16851 \N \N 3891 11 +9076 16852 \N \N 3892 11 +9077 16853 \N \N 3893 11 +9078 16854 \N \N 3894 11 +9079 16855 \N \N 3895 11 +9080 16856 \N \N 3896 11 +9081 16857 \N \N 3897 11 +9082 16858 \N \N 3898 11 +9083 16859 \N \N 3899 11 +9084 16860 \N \N 3900 11 +9085 16861 \N \N 3901 11 +9086 16862 \N \N 3902 11 +9087 16863 \N \N 3903 11 +9088 16864 \N \N 3904 11 +9089 16865 \N \N 3905 11 +9090 16866 \N \N 3906 11 +9091 16867 \N \N 3907 11 +9092 16868 \N \N 3908 11 +9093 16869 \N \N 3909 11 +9094 16870 \N \N 3910 11 +9095 16871 \N \N 3911 11 +9096 16872 \N \N 3912 11 +9097 16873 \N \N 3913 11 +9098 16874 \N \N 3914 11 +9099 16875 \N \N 3915 11 +9100 16876 \N \N 3916 11 +9101 16877 \N \N 3917 11 +9102 16878 \N \N 3918 11 +9103 16879 \N \N 3919 11 +9104 16880 \N \N 3920 11 +9105 16881 \N \N 3921 11 +9106 16882 \N \N 3922 11 +9107 16883 \N \N 3923 11 +9108 16884 \N \N 3924 11 +9109 16885 \N \N 3925 11 +9110 16886 \N \N 3926 11 +9111 16887 \N \N 3927 11 +9112 16888 \N \N 3928 11 +9113 16889 \N \N 3929 11 +9114 16890 \N \N 3930 11 +9115 16891 \N \N 3931 11 +9116 16892 \N \N 3932 11 +9117 16893 \N \N 3933 11 +9118 16894 \N \N 3934 11 +9119 16895 \N \N 3935 11 +9120 16896 \N \N 3936 11 +9121 16897 \N \N 3937 11 +9122 16898 \N \N 3938 11 +9123 16899 \N \N 3939 11 +9124 16900 \N \N 3940 11 +9125 16901 \N \N 3941 11 +9126 16902 \N \N 3942 11 +9127 16903 \N \N 3943 11 +9128 16904 \N \N 3944 11 +9129 16905 \N \N 3945 11 +9130 16906 \N \N 3946 11 +9131 16907 \N \N 3947 11 +9132 16908 \N \N 3948 11 +9133 16909 \N \N 3949 11 +9134 16910 \N \N 3950 11 +9135 16911 \N \N 3951 11 +9136 16912 \N \N 3952 11 +9137 16913 \N \N 3953 11 +9138 16914 \N \N 3954 11 +9139 16915 \N \N 3955 11 +9140 16916 \N \N 3956 11 +9141 16917 \N \N 3957 11 +9142 16918 \N \N 3958 11 +9143 16919 \N \N 3959 11 +9144 16920 \N \N 3960 11 +9145 16921 \N \N 3961 11 +9146 16922 \N \N 3962 11 +9147 16923 \N \N 3963 11 +9148 16924 \N \N 3964 11 +9149 16925 \N \N 3965 11 +9150 16926 \N \N 3966 11 +9151 16927 \N \N 3967 11 +9152 16928 \N \N 3968 11 +9153 16929 \N \N 3969 11 +9154 16930 \N \N 3970 11 +9155 16931 \N \N 3971 11 +9156 16932 \N \N 3972 11 +9157 16933 \N \N 3973 11 +9158 16934 \N \N 3974 11 +9159 16935 \N \N 3975 11 +9160 16936 \N \N 3976 11 +9161 16937 \N \N 3977 11 +9162 16938 \N \N 3978 11 +9163 16939 \N \N 3979 11 +9164 16940 \N \N 3980 11 +9165 16941 \N \N 3981 11 +9166 16942 \N \N 3982 11 +9167 16943 \N \N 3983 11 +9168 16944 \N \N 3984 11 +9169 16945 \N \N 3985 11 +9170 16946 \N \N 3986 11 +9171 16947 \N \N 3987 11 +9172 16948 \N \N 3988 11 +9173 16949 \N \N 3989 11 +9174 16950 \N \N 3990 11 +9175 16951 \N \N 3991 11 +9176 16952 \N \N 3992 11 +9177 16953 \N \N 3993 11 +9178 16954 \N \N 3994 11 +9179 16955 \N \N 3995 11 +9180 16956 \N \N 3996 11 +9181 16957 \N \N 3997 11 +9182 16958 \N \N 3998 11 +9183 16959 \N \N 3999 11 +9184 16960 \N \N 4000 11 +9185 16961 \N \N 4001 11 +9186 16962 \N \N 4002 11 +9187 16963 \N \N 4003 11 +9188 16964 \N \N 4004 11 +9189 16965 \N \N 4005 11 +9190 16966 \N \N 4006 11 +9191 16967 \N \N 4007 11 +9192 16968 \N \N 4008 11 +9193 16969 \N \N 4009 11 +9194 16970 \N \N 4010 11 +9195 16971 \N \N 4011 11 +9196 16972 \N \N 4012 11 +9197 16973 \N \N 4013 11 +9198 16974 \N \N 4014 11 +9199 16975 \N \N 4015 11 +9200 16976 \N \N 4016 11 +9201 16977 \N \N 4017 11 +9202 16978 \N \N 4018 11 +9203 16979 \N \N 4019 11 +9204 16980 \N \N 4020 11 +9205 16981 \N \N 4021 11 +9206 16982 \N \N 4022 11 +9207 16983 \N \N 4023 11 +9208 16984 \N \N 4024 11 +9209 16985 \N \N 4025 11 +9210 16986 \N \N 4026 11 +9211 16987 \N \N 4027 11 +9212 16988 \N \N 4028 11 +9213 16989 \N \N 4029 11 +9214 16990 \N \N 4030 11 +9215 16991 \N \N 4031 11 +9216 16992 \N \N 4032 11 +9217 16993 \N \N 4033 11 +9218 16994 \N \N 4034 11 +9219 16995 \N \N 4035 11 +9220 16996 \N \N 4036 11 +9221 16997 \N \N 4037 11 +9222 16998 \N \N 4038 11 +9223 16999 \N \N 4039 11 +9224 17000 \N \N 4040 11 +9225 17001 \N \N 4041 11 +9226 17002 \N \N 4042 11 +9227 17003 \N \N 4043 11 +9228 17004 \N \N 4044 11 +9229 17005 \N \N 4045 11 +9230 17006 \N \N 4046 11 +9231 17007 \N \N 4047 11 +9232 17008 \N \N 4048 11 +9233 17009 \N \N 4049 11 +9234 17010 \N \N 4050 11 +9235 17011 \N \N 4051 11 +9236 17012 \N \N 4052 11 +9237 17013 \N \N 4053 11 +9238 17014 \N \N 4054 11 +9239 17015 \N \N 4055 11 +9240 17016 \N \N 4056 11 +9241 17017 \N \N 4057 11 +9242 17018 \N \N 4058 11 +9243 17019 \N \N 4059 11 +9244 17020 \N \N 4060 11 +9245 17021 \N \N 4061 11 +9246 17022 \N \N 4062 11 +9247 17023 \N \N 4063 11 +9248 17024 \N \N 4064 11 +9249 17025 \N \N 4065 11 +9250 17026 \N \N 4066 11 +9251 17027 \N \N 4067 11 +9252 17028 \N \N 4068 11 +9253 17029 \N \N 4069 11 +9254 17030 \N \N 4070 11 +9255 17031 \N \N 4071 11 +9256 17032 \N \N 4072 11 +9257 17033 \N \N 4073 11 +9258 17034 \N \N 4074 11 +9259 17035 \N \N 4075 11 +9260 17036 \N \N 4076 11 +9261 17037 \N \N 4077 11 +9262 17038 \N \N 4078 11 +9263 17039 \N \N 4079 11 +9264 17040 \N \N 4080 11 +9265 17041 \N \N 4081 11 +9266 17042 \N \N 4082 11 +9267 17043 \N \N 4083 11 +9268 17044 \N \N 4084 11 +9269 17045 \N \N 4085 11 +9270 17046 \N \N 4086 11 +9271 17047 \N \N 4087 11 +9272 17048 \N \N 4088 11 +9273 17049 \N \N 4089 11 +9274 17050 \N \N 4090 11 +9275 17051 \N \N 4091 11 +9276 17052 \N \N 4092 11 +9277 17053 \N \N 4093 11 +9278 17054 \N \N 4094 11 +9279 17055 \N \N 4095 11 +9280 17056 \N \N 4096 11 +9281 17057 \N \N 4097 11 +9282 17058 \N \N 4098 11 +9283 17059 \N \N 4099 11 +9284 17060 \N \N 4100 11 +9285 17061 \N \N 4101 11 +9286 17062 \N \N 4102 11 +9287 17063 \N \N 4103 11 +9288 17064 \N \N 4104 11 +9289 17065 \N \N 4105 11 +9290 17066 \N \N 4106 11 +9291 17067 \N \N 4107 11 +9292 17068 \N \N 4108 11 +9293 17069 \N \N 4109 11 +9294 17070 \N \N 4110 11 +9295 17071 \N \N 4111 11 +9296 17072 \N \N 4112 11 +9297 17073 \N \N 4113 11 +9298 17074 \N \N 4114 11 +9299 17075 \N \N 4115 11 +9300 17076 \N \N 4116 11 +9301 17077 \N \N 4117 11 +9302 17078 \N \N 4118 11 +9303 17079 \N \N 4119 11 +9304 17080 \N \N 4120 11 +9305 17081 \N \N 4121 11 +9306 17082 \N \N 4122 11 +9307 17083 \N \N 4123 11 +9308 17084 \N \N 4124 11 +9309 17085 \N \N 4125 11 +9310 17086 \N \N 4126 11 +9311 17087 \N \N 4127 11 +9312 17088 \N \N 4128 11 +9313 17089 \N \N 4129 11 +9314 17090 \N \N 4130 11 +9315 17091 \N \N 4131 11 +9316 17092 \N \N 4132 11 +9317 17093 \N \N 4133 11 +9318 17094 \N \N 4134 11 +9319 17095 \N \N 4135 11 +9320 17096 \N \N 4136 11 +9321 17097 \N \N 4137 11 +9322 17098 \N \N 4138 11 +9323 17099 \N \N 4139 11 +9324 17100 \N \N 4140 11 +9325 17101 \N \N 4141 11 +9326 17102 \N \N 4142 11 +9327 17103 \N \N 4143 11 +9328 17104 \N \N 4144 11 +9329 17105 \N \N 4145 11 +9330 17106 \N \N 4146 11 +9331 17107 \N \N 4147 11 +9332 17108 \N \N 4148 11 +9333 17109 \N \N 4149 11 +9334 17110 \N \N 4150 11 +9335 17111 \N \N 4151 11 +9336 17112 \N \N 4152 11 +9337 17113 \N \N 4153 11 +9338 17114 \N \N 4154 11 +9339 17115 \N \N 4155 11 +9340 17116 \N \N 4156 11 +9341 17117 \N \N 4157 11 +9342 17118 \N \N 4158 11 +9343 17119 \N \N 4159 11 +9344 17120 \N \N 4160 11 +9345 17121 \N \N 4161 11 +9346 17122 \N \N 4162 11 +9347 17123 \N \N 4163 11 +9348 17124 \N \N 4164 11 +9349 17125 \N \N 4165 11 +9350 17126 \N \N 4166 11 +9351 17127 \N \N 4167 11 +9352 17128 \N \N 4168 11 +9353 17129 \N \N 4169 11 +9354 17130 \N \N 4170 11 +9355 17131 \N \N 4171 11 +9356 17132 \N \N 4172 11 +9357 17133 \N \N 4173 11 +9358 17134 \N \N 4174 11 +9359 17135 \N \N 4175 11 +9360 17136 \N \N 4176 11 +9361 17137 \N \N 4177 11 +9362 17138 \N \N 4178 11 +9363 17139 \N \N 4179 11 +9364 17140 \N \N 4180 11 +9365 17141 \N \N 4181 11 +9366 17142 \N \N 4182 11 +9367 17143 \N \N 4183 11 +9368 17144 \N \N 4184 11 +9369 17145 \N \N 4185 11 +9370 17146 \N \N 4186 11 +9371 17147 \N \N 4187 11 +9372 17148 \N \N 4188 11 +9373 17149 \N \N 4189 11 +9374 17150 \N \N 4190 11 +9375 17151 \N \N 4191 11 +9376 17152 \N \N 4192 11 +9377 17153 \N \N 4193 11 +9378 17154 \N \N 4194 11 +9379 17155 \N \N 4195 11 +9380 17156 \N \N 4196 11 +9381 17157 \N \N 4197 11 +9382 17158 \N \N 4198 11 +9383 17159 \N \N 4199 11 +9384 17160 \N \N 4200 11 +9385 17161 \N \N 4201 11 +9386 17162 \N \N 4202 11 +9387 17163 \N \N 4203 11 +9388 17164 \N \N 4204 11 +9389 17165 \N \N 4205 11 +9390 17166 \N \N 4206 11 +9391 17167 \N \N 4207 11 +9392 17168 \N \N 4208 11 +9393 17169 \N \N 4209 11 +9394 17170 \N \N 4210 11 +9395 17171 \N \N 4211 11 +9396 17172 \N \N 4212 11 +9397 17173 \N \N 4213 11 +9398 17174 \N \N 4214 11 +9399 17175 \N \N 4215 11 +9400 17176 \N \N 4216 11 +9401 17177 \N \N 4217 11 +9402 17178 \N \N 4218 11 +9403 17179 \N \N 4219 11 +9404 17180 \N \N 4220 11 +9405 17181 \N \N 4221 11 +9406 17182 \N \N 4222 11 +9407 17183 \N \N 4223 11 +9408 17184 \N \N 4224 11 +9409 17185 \N \N 4225 11 +9410 17186 \N \N 4226 11 +9411 17187 \N \N 4227 11 +9412 17188 \N \N 4228 11 +9413 17189 \N \N 4229 11 +9414 17190 \N \N 4230 11 +9415 17191 \N \N 4231 11 +9416 17192 \N \N 4232 11 +9417 17193 \N \N 4233 11 +9418 17194 \N \N 4234 11 +9419 17195 \N \N 4235 11 +9420 17196 \N \N 4236 11 +9421 17197 \N \N 4237 11 +9422 17198 \N \N 4238 11 +9423 17199 \N \N 4239 11 +9424 17200 \N \N 4240 11 +9425 17201 \N \N 4241 11 +9426 17202 \N \N 4242 11 +9427 17203 \N \N 4243 11 +9428 17204 \N \N 4244 11 +9429 17205 \N \N 4245 11 +9430 17206 \N \N 4246 11 +9431 17207 \N \N 4247 11 +9432 17208 \N \N 4248 11 +9433 17209 \N \N 4249 11 +9434 17210 \N \N 4250 11 +9435 17211 \N \N 4251 11 +9436 17212 \N \N 4252 11 +9437 17213 \N \N 4253 11 +9438 17214 \N \N 4254 11 +9439 17215 \N \N 4255 11 +9440 17216 \N \N 4256 11 +9441 17217 \N \N 4257 11 +9442 17218 \N \N 4258 11 +9443 17219 \N \N 4259 11 +9444 17220 \N \N 4260 11 +9445 17221 \N \N 4261 11 +9446 17222 \N \N 4262 11 +9447 17223 \N \N 4263 11 +9448 17224 \N \N 4264 11 +9449 17225 \N \N 4265 11 +9450 17226 \N \N 4266 11 +9451 17227 \N \N 4267 11 +9452 17228 \N \N 4268 11 +9453 17229 \N \N 4269 11 +9454 17230 \N \N 4270 11 +9455 17231 \N \N 4271 11 +9456 17232 \N \N 4272 11 +9457 17233 \N \N 4273 11 +9458 17234 \N \N 4274 11 +9459 17235 \N \N 4275 11 +9460 17236 \N \N 4276 11 +9461 17237 \N \N 4277 11 +9462 17238 \N \N 4278 11 +9463 17239 \N \N 4279 11 +9464 17240 \N \N 4280 11 +9465 17241 \N \N 4281 11 +9466 17242 \N \N 4282 11 +9467 17243 \N \N 4283 11 +9468 17244 \N \N 4284 11 +9469 17245 \N \N 4285 11 +9470 17246 \N \N 4286 11 +9471 17247 \N \N 4287 11 +9472 17248 \N \N 4288 11 +9473 17249 \N \N 4289 11 +9474 17250 \N \N 4290 11 +9475 17251 \N \N 4291 11 +9476 17252 \N \N 4292 11 +9477 17253 \N \N 4293 11 +9478 17254 \N \N 4294 11 +9479 17255 \N \N 4295 11 +9480 17256 \N \N 4296 11 +9481 17257 \N \N 4297 11 +9482 17258 \N \N 4298 11 +9483 17259 \N \N 4299 11 +9484 17260 \N \N 4300 11 +9485 17261 \N \N 4301 11 +9486 17262 \N \N 4302 11 +9487 17263 \N \N 4303 11 +9488 17264 \N \N 4304 11 +9489 17265 \N \N 4305 11 +9490 17266 \N \N 4306 11 +9491 17267 \N \N 4307 11 +9492 17268 \N \N 4308 11 +9493 17269 \N \N 4309 11 +9494 17270 \N \N 4310 11 +9495 17271 \N \N 4311 11 +9496 17272 \N \N 4312 11 +9497 17273 \N \N 4313 11 +9498 17274 \N \N 4314 11 +9499 17275 \N \N 4315 11 +9500 17276 \N \N 4316 11 +9501 17277 \N \N 4317 11 +9502 17278 \N \N 4318 11 +9503 17279 \N \N 4319 11 +9504 17280 \N \N 4320 11 +\. + + +-- +-- Data for Name: analysis_data_sets; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY analysis_data_sets (id, perm_id, cont_id) FROM stdin; +3 20130412153659945-390 1 +\. + + +-- +-- Data for Name: channel_stacks; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY channel_stacks (id, x, y, z_in_m, t_in_sec, series_number, is_representative, ds_id, spot_id) FROM stdin; +865 2 3 \N \N \N f 2 110 +866 2 2 \N \N \N f 2 141 +867 2 1 \N \N \N f 2 172 +868 2 3 \N \N \N f 2 108 +869 2 2 \N \N \N f 2 139 +870 2 1 \N \N \N f 2 170 +871 3 2 \N \N \N f 2 115 +872 2 1 \N \N \N f 2 114 +873 3 1 \N \N \N f 2 146 +874 2 3 \N \N \N f 2 106 +875 2 2 \N \N \N f 2 137 +876 2 1 \N \N \N f 2 168 +877 3 3 \N \N \N f 2 166 +878 3 2 \N \N \N f 2 126 +879 3 1 \N \N \N f 2 157 +880 3 2 \N \N \N f 2 191 +881 3 3 \N \N \N f 2 160 +882 1 1 \N \N \N t 2 107 +883 2 1 \N \N \N f 2 105 +884 2 3 \N \N \N f 2 181 +885 2 3 \N \N \N f 2 136 +886 2 2 \N \N \N f 2 167 +887 3 2 \N \N \N f 2 108 +888 3 1 \N \N \N f 2 139 +889 3 2 \N \N \N f 2 183 +890 3 3 \N \N \N f 2 152 +891 3 1 \N \N \N f 2 142 +892 3 2 \N \N \N f 2 111 +893 2 1 \N \N \N f 2 97 +894 3 3 \N \N \N f 2 187 +895 3 3 \N \N \N f 2 135 +896 3 2 \N \N \N f 2 166 +897 3 1 \N \N \N f 2 104 +898 1 1 \N \N \N t 2 111 +899 3 2 \N \N \N f 2 107 +900 3 1 \N \N \N f 2 138 +901 1 3 \N \N \N f 2 177 +902 1 3 \N \N \N f 2 144 +903 1 2 \N \N \N f 2 175 +904 2 1 \N \N \N f 2 182 +905 2 3 \N \N \N f 2 120 +906 2 2 \N \N \N f 2 151 +907 1 1 \N \N \N t 2 115 +908 1 3 \N \N \N f 2 140 +909 1 2 \N \N \N f 2 171 +910 1 1 \N \N \N t 2 127 +911 2 1 \N \N \N f 2 134 +912 2 2 \N \N \N f 2 103 +913 3 2 \N \N \N f 2 127 +914 3 1 \N \N \N f 2 158 +915 2 2 \N \N \N f 2 185 +916 2 3 \N \N \N f 2 154 +917 2 1 \N \N \N f 2 189 +918 1 3 \N \N \N f 2 136 +919 2 3 \N \N \N f 2 127 +920 1 2 \N \N \N f 2 167 +921 2 2 \N \N \N f 2 158 +922 2 3 \N \N \N f 2 185 +923 2 3 \N \N \N f 2 179 +924 1 3 \N \N \N f 2 180 +925 2 1 \N \N \N f 2 186 +926 2 3 \N \N \N f 2 124 +927 2 2 \N \N \N f 2 155 +928 1 2 \N \N \N f 2 187 +929 2 3 \N \N \N f 2 182 +930 1 3 \N \N \N f 2 156 +931 2 1 \N \N \N f 2 142 +932 2 2 \N \N \N f 2 111 +933 1 1 \N \N \N t 2 183 +934 1 3 \N \N \N f 2 121 +935 1 2 \N \N \N f 2 152 +936 3 2 \N \N \N f 2 135 +937 3 3 \N \N \N f 2 104 +938 3 1 \N \N \N f 2 166 +939 1 3 \N \N \N f 2 148 +940 1 2 \N \N \N f 2 179 +941 3 3 \N \N \N f 2 169 +942 3 3 \N \N \N f 2 116 +943 3 2 \N \N \N f 2 147 +944 3 1 \N \N \N f 2 178 +945 1 1 \N \N \N t 2 103 +946 1 1 \N \N \N t 2 130 +947 1 2 \N \N \N f 2 99 +948 2 1 \N \N \N f 2 117 +949 1 2 \N \N \N f 2 124 +950 1 1 \N \N \N t 2 155 +951 3 3 \N \N \N f 2 175 +952 1 3 \N \N \N f 2 106 +953 1 2 \N \N \N f 2 137 +954 1 1 \N \N \N t 2 168 +955 1 1 \N \N \N t 2 186 +956 1 3 \N \N \N f 2 124 +957 3 1 \N \N \N f 2 119 +958 1 2 \N \N \N f 2 155 +959 2 3 \N \N \N f 2 162 +960 3 2 \N \N \N f 2 143 +961 3 3 \N \N \N f 2 112 +962 3 1 \N \N \N f 2 174 +963 2 1 \N \N \N f 2 113 +964 3 3 \N \N \N f 2 173 +965 3 2 \N \N \N f 2 185 +966 3 3 \N \N \N f 2 154 +967 1 3 \N \N \N f 2 128 +968 1 2 \N \N \N f 2 159 +969 1 1 \N \N \N t 2 190 +970 2 1 \N \N \N f 2 133 +971 2 2 \N \N \N f 2 102 +972 3 1 \N \N \N f 2 182 +973 3 3 \N \N \N f 2 120 +974 3 2 \N \N \N f 2 151 +975 3 3 \N \N \N f 2 167 +976 1 1 \N \N \N t 2 192 +977 1 3 \N \N \N f 2 130 +978 1 2 \N \N \N f 2 161 +979 2 3 \N \N \N f 2 133 +980 2 2 \N \N \N f 2 164 +981 1 3 \N \N \N f 2 116 +982 1 2 \N \N \N f 2 147 +983 1 1 \N \N \N t 2 178 +984 2 2 \N \N \N f 2 143 +985 2 3 \N \N \N f 2 112 +986 2 1 \N \N \N f 2 174 +987 1 3 \N \N \N f 2 174 +988 3 1 \N \N \N f 2 181 +989 3 3 \N \N \N f 2 119 +990 3 2 \N \N \N f 2 150 +991 3 3 \N \N \N f 2 184 +992 3 1 \N \N \N f 2 125 +993 3 2 \N \N \N f 2 134 +994 3 3 \N \N \N f 2 103 +995 3 1 \N \N \N f 2 165 +996 2 3 \N \N \N f 2 129 +997 2 2 \N \N \N f 2 160 +998 2 1 \N \N \N f 2 191 +999 2 2 \N \N \N f 2 184 +1000 2 3 \N \N \N f 2 153 +1001 2 3 \N \N \N f 2 115 +1002 2 2 \N \N \N f 2 146 +1003 2 1 \N \N \N f 2 177 +1004 2 1 \N \N \N f 2 122 +1005 3 3 \N \N \N f 2 139 +1006 3 2 \N \N \N f 2 170 +1007 3 3 \N \N \N f 2 133 +1008 3 2 \N \N \N f 2 164 +1009 1 3 \N \N \N f 2 165 +1010 3 1 \N \N \N f 2 102 +1011 2 3 \N \N \N f 2 145 +1012 2 2 \N \N \N f 2 176 +1013 1 2 \N \N \N f 2 128 +1014 1 3 \N \N \N f 2 97 +1015 1 1 \N \N \N t 2 159 +1016 2 3 \N \N \N f 2 138 +1017 2 2 \N \N \N f 2 169 +1018 2 1 \N \N \N f 2 183 +1019 2 3 \N \N \N f 2 121 +1020 2 2 \N \N \N f 2 152 +1021 2 1 \N \N \N f 2 101 +1022 1 3 \N \N \N f 2 191 +1023 2 3 \N \N \N f 2 147 +1024 2 2 \N \N \N f 2 178 +1025 2 1 \N \N \N f 2 130 +1026 2 2 \N \N \N f 2 99 +1027 1 3 \N \N \N f 2 168 +1028 1 1 \N \N \N t 2 106 +1029 1 3 \N \N \N f 2 109 +1030 1 2 \N \N \N f 2 140 +1031 1 1 \N \N \N t 2 171 +1032 1 2 \N \N \N f 2 122 +1033 1 1 \N \N \N t 2 153 +1034 1 3 \N \N \N f 2 172 +1035 1 2 \N \N \N f 2 114 +1036 1 1 \N \N \N t 2 145 +1037 3 2 \N \N \N f 2 187 +1038 3 3 \N \N \N f 2 156 +1039 1 3 \N \N \N f 2 189 +1040 3 1 \N \N \N f 2 118 +1041 2 2 \N \N \N f 2 107 +1042 2 1 \N \N \N f 2 138 +1043 3 3 \N \N \N f 2 148 +1044 3 2 \N \N \N f 2 179 +1045 2 1 \N \N \N f 2 99 +1046 3 1 \N \N \N f 2 98 +1047 2 3 \N \N \N f 2 141 +1048 2 2 \N \N \N f 2 172 +1049 3 2 \N \N \N f 2 117 +1050 3 1 \N \N \N f 2 148 +1051 2 2 \N \N \N f 2 123 +1052 2 1 \N \N \N f 2 154 +1053 1 1 \N \N \N t 2 136 +1054 1 2 \N \N \N f 2 116 +1055 1 2 \N \N \N f 2 105 +1056 1 1 \N \N \N t 2 147 +1057 3 1 \N \N \N f 2 123 +1058 3 3 \N \N \N f 2 110 +1059 3 2 \N \N \N f 2 141 +1060 3 1 \N \N \N f 2 172 +1061 1 3 \N \N \N f 2 160 +1062 1 2 \N \N \N f 2 191 +1063 3 3 \N \N \N f 2 171 +1064 1 3 \N \N \N f 2 142 +1065 1 2 \N \N \N f 2 173 +1066 2 3 \N \N \N f 2 189 +1067 1 1 \N \N \N t 2 98 +1068 3 1 \N \N \N f 2 110 +1069 2 2 \N \N \N f 2 192 +1070 2 3 \N \N \N f 2 161 +1071 1 1 \N \N \N t 2 143 +1072 1 2 \N \N \N f 2 112 +1073 1 1 \N \N \N t 2 124 +1074 1 2 \N \N \N f 2 119 +1075 1 1 \N \N \N t 2 150 +1076 2 2 \N \N \N f 2 116 +1077 2 1 \N \N \N f 2 147 +1078 2 3 \N \N \N f 2 166 +1079 3 3 \N \N \N f 2 140 +1080 3 2 \N \N \N f 2 171 +1081 2 2 \N \N \N f 2 120 +1082 2 1 \N \N \N f 2 151 +1083 1 1 \N \N \N t 2 100 +1084 3 3 \N \N \N f 2 163 +1085 3 3 \N \N \N f 2 136 +1086 3 2 \N \N \N f 2 167 +1087 1 2 \N \N \N f 2 120 +1088 1 1 \N \N \N t 2 151 +1089 2 3 \N \N \N f 2 190 +1090 1 3 \N \N \N f 2 159 +1091 1 2 \N \N \N f 2 190 +1092 1 3 \N \N \N f 2 184 +1093 1 1 \N \N \N t 2 119 +1094 3 2 \N \N \N f 2 136 +1095 3 3 \N \N \N f 2 105 +1096 3 1 \N \N \N f 2 167 +1097 3 3 \N \N \N f 2 190 +1098 2 3 \N \N \N f 2 131 +1099 2 2 \N \N \N f 2 162 +1100 1 1 \N \N \N t 2 120 +1101 1 2 \N \N \N f 2 107 +1102 1 1 \N \N \N t 2 138 +1103 3 3 \N \N \N f 2 107 +1104 3 2 \N \N \N f 2 138 +1105 3 1 \N \N \N f 2 169 +1106 2 1 \N \N \N f 2 181 +1107 2 3 \N \N \N f 2 119 +1108 2 2 \N \N \N f 2 150 +1109 1 3 \N \N \N f 2 139 +1110 1 2 \N \N \N f 2 170 +1111 3 3 \N \N \N f 2 170 +1112 1 1 \N \N \N t 2 112 +1113 3 1 \N \N \N f 2 121 +1114 1 1 \N \N \N t 2 101 +1115 1 3 \N \N \N f 2 163 +1116 1 3 \N \N \N f 2 166 +1117 3 2 \N \N \N f 2 120 +1118 3 1 \N \N \N f 2 151 +1119 2 2 \N \N \N f 2 114 +1120 2 1 \N \N \N f 2 145 +1121 2 3 \N \N \N f 2 143 +1122 2 2 \N \N \N f 2 174 +1123 2 1 \N \N \N f 2 185 +1124 2 3 \N \N \N f 2 123 +1125 2 2 \N \N \N f 2 154 +1126 2 3 \N \N \N f 2 174 +1127 3 3 \N \N \N f 2 186 +1128 3 3 \N \N \N f 2 149 +1129 3 2 \N \N \N f 2 180 +1130 2 2 \N \N \N f 2 182 +1131 2 3 \N \N \N f 2 151 +1132 2 1 \N \N \N f 2 187 +1133 2 3 \N \N \N f 2 125 +1134 2 2 \N \N \N f 2 156 +1135 3 2 \N \N \N f 2 132 +1136 3 3 \N \N \N f 2 101 +1137 3 1 \N \N \N f 2 163 +1138 1 2 \N \N \N f 2 144 +1139 1 3 \N \N \N f 2 113 +1140 1 1 \N \N \N t 2 175 +1141 2 2 \N \N \N f 2 144 +1142 2 3 \N \N \N f 2 113 +1143 2 1 \N \N \N f 2 175 +1144 3 2 \N \N \N f 2 122 +1145 3 1 \N \N \N f 2 153 +1146 1 3 \N \N \N f 2 175 +1147 3 1 \N \N \N f 2 130 +1148 3 2 \N \N \N f 2 99 +1149 3 1 \N \N \N f 2 128 +1150 3 2 \N \N \N f 2 97 +1151 2 1 \N \N \N f 2 131 +1152 2 2 \N \N \N f 2 100 +1153 3 3 \N \N \N f 2 162 +1154 2 1 \N \N \N f 2 124 +1155 2 1 \N \N \N f 2 128 +1156 2 2 \N \N \N f 2 97 +1157 2 3 \N \N \N f 2 116 +1158 3 3 \N \N \N f 2 109 +1159 3 2 \N \N \N f 2 140 +1160 2 2 \N \N \N f 2 147 +1161 2 1 \N \N \N f 2 178 +1162 3 1 \N \N \N f 2 171 +1163 3 3 \N \N \N f 2 141 +1164 3 3 \N \N \N f 2 178 +1165 3 2 \N \N \N f 2 172 +1166 2 2 \N \N \N f 2 106 +1167 2 1 \N \N \N f 2 137 +1168 1 1 \N \N \N t 2 181 +1169 1 3 \N \N \N f 2 119 +1170 1 2 \N \N \N f 2 150 +1171 3 3 \N \N \N f 2 176 +1172 3 1 \N \N \N f 2 114 +1173 1 1 \N \N \N t 2 126 +1174 3 2 \N \N \N f 2 124 +1175 3 1 \N \N \N f 2 155 +1176 2 1 \N \N \N f 2 103 +1177 1 1 \N \N \N t 2 132 +1178 1 2 \N \N \N f 2 101 +1179 1 3 \N \N \N f 2 183 +1180 2 3 \N \N \N f 2 191 +1181 2 1 \N \N \N f 2 143 +1182 1 2 \N \N \N f 2 125 +1183 2 2 \N \N \N f 2 112 +1184 1 1 \N \N \N t 2 156 +1185 3 3 \N \N \N f 2 145 +1186 3 2 \N \N \N f 2 176 +1187 3 2 \N \N \N f 2 184 +1188 3 3 \N \N \N f 2 153 +1189 3 1 \N \N \N f 2 192 +1190 3 3 \N \N \N f 2 130 +1191 3 2 \N \N \N f 2 161 +1192 2 2 \N \N \N f 2 135 +1193 2 3 \N \N \N f 2 104 +1194 2 1 \N \N \N f 2 166 +1195 2 1 \N \N \N f 2 126 +1196 2 2 \N \N \N f 2 110 +1197 2 1 \N \N \N f 2 141 +1198 1 1 \N \N \N t 2 117 +1199 3 2 \N \N \N f 2 182 +1200 2 1 \N \N \N f 2 129 +1201 2 2 \N \N \N f 2 98 +1202 3 1 \N \N \N f 2 113 +1203 3 3 \N \N \N f 2 151 +1204 3 2 \N \N \N f 2 123 +1205 3 1 \N \N \N f 2 154 +1206 2 3 \N \N \N f 2 149 +1207 2 2 \N \N \N f 2 180 +1208 3 3 \N \N \N f 2 128 +1209 3 2 \N \N \N f 2 159 +1210 3 1 \N \N \N f 2 190 +1211 1 2 \N \N \N f 2 130 +1212 1 3 \N \N \N f 2 99 +1213 3 3 \N \N \N f 2 147 +1214 1 1 \N \N \N t 2 161 +1215 3 2 \N \N \N f 2 178 +1216 1 2 \N \N \N f 2 109 +1217 1 1 \N \N \N t 2 140 +1218 1 2 \N \N \N f 2 182 +1219 1 3 \N \N \N f 2 151 +1220 3 3 \N \N \N f 2 144 +1221 2 3 \N \N \N f 2 142 +1222 2 2 \N \N \N f 2 173 +1223 3 2 \N \N \N f 2 175 +1224 1 3 \N \N \N f 2 192 +1225 3 3 \N \N \N f 2 137 +1226 3 2 \N \N \N f 2 168 +1227 1 2 \N \N \N f 2 185 +1228 1 3 \N \N \N f 2 154 +1229 2 3 \N \N \N f 2 175 +1230 1 3 \N \N \N f 2 145 +1231 1 2 \N \N \N f 2 176 +1232 3 1 \N \N \N f 2 109 +1233 3 3 \N \N \N f 2 182 +1234 1 3 \N \N \N f 2 108 +1235 1 2 \N \N \N f 2 139 +1236 1 1 \N \N \N t 2 170 +1237 2 3 \N \N \N f 2 132 +1238 2 2 \N \N \N f 2 163 +1239 2 1 \N \N \N f 2 98 +1240 3 1 \N \N \N f 2 105 +1241 1 1 \N \N \N t 2 144 +1242 1 2 \N \N \N f 2 113 +1243 1 2 \N \N \N f 2 132 +1244 1 3 \N \N \N f 2 101 +1245 1 1 \N \N \N t 2 163 +1246 3 1 \N \N \N f 2 122 +1247 3 1 \N \N \N f 2 111 +1248 1 3 \N \N \N f 2 131 +1249 1 2 \N \N \N f 2 162 +1250 1 3 \N \N \N f 2 186 +1251 1 1 \N \N \N t 2 99 +1252 1 2 \N \N \N f 2 188 +1253 1 3 \N \N \N f 2 157 +1254 1 1 \N \N \N t 2 135 +1255 1 2 \N \N \N f 2 133 +1256 1 2 \N \N \N f 2 104 +1257 1 3 \N \N \N f 2 102 +1258 1 1 \N \N \N t 2 164 +1259 2 3 \N \N \N f 2 170 +1260 2 3 \N \N \N f 2 172 +1261 2 2 \N \N \N f 2 118 +1262 2 1 \N \N \N f 2 149 +1263 2 2 \N \N \N f 2 186 +1264 2 3 \N \N \N f 2 155 +1265 3 1 \N \N \N f 2 183 +1266 3 3 \N \N \N f 2 121 +1267 3 2 \N \N \N f 2 152 +1268 2 3 \N \N \N f 2 146 +1269 2 2 \N \N \N f 2 177 +1270 2 3 \N \N \N f 2 187 +1271 1 3 \N \N \N f 2 149 +1272 1 2 \N \N \N f 2 180 +1273 2 2 \N \N \N f 2 131 +1274 2 3 \N \N \N f 2 100 +1275 2 1 \N \N \N f 2 162 +1276 3 3 \N \N \N f 2 174 +1277 2 2 \N \N \N f 2 126 +1278 2 1 \N \N \N f 2 157 +1279 3 2 \N \N \N f 2 131 +1280 3 3 \N \N \N f 2 100 +1281 3 1 \N \N \N f 2 162 +1282 1 3 \N \N \N f 2 147 +1283 1 2 \N \N \N f 2 178 +1284 2 2 \N \N \N f 2 127 +1285 2 1 \N \N \N f 2 158 +1286 3 1 \N \N \N f 2 107 +1287 3 1 \N \N \N f 2 186 +1288 3 3 \N \N \N f 2 124 +1289 3 2 \N \N \N f 2 155 +1290 2 2 \N \N \N f 2 130 +1291 2 3 \N \N \N f 2 99 +1292 2 1 \N \N \N f 2 161 +1293 1 3 \N \N \N f 2 115 +1294 1 2 \N \N \N f 2 146 +1295 1 1 \N \N \N t 2 177 +1296 2 1 \N \N \N f 2 110 +1297 3 2 \N \N \N f 2 106 +1298 3 1 \N \N \N f 2 137 +1299 2 3 \N \N \N f 2 178 +1300 3 1 \N \N \N f 2 134 +1301 3 2 \N \N \N f 2 103 +1302 2 2 \N \N \N f 2 189 +1303 2 3 \N \N \N f 2 158 +1304 2 3 \N \N \N f 2 188 +1305 1 3 \N \N \N f 2 164 +1306 2 3 \N \N \N f 2 107 +1307 1 1 \N \N \N t 2 105 +1308 2 2 \N \N \N f 2 138 +1309 2 1 \N \N \N f 2 169 +1310 2 2 \N \N \N f 2 133 +1311 2 3 \N \N \N f 2 102 +1312 2 1 \N \N \N f 2 164 +1313 2 3 \N \N \N f 2 140 +1314 2 2 \N \N \N f 2 171 +1315 1 1 \N \N \N t 2 109 +1316 2 1 \N \N \N f 2 107 +1317 3 2 \N \N \N f 2 109 +1318 3 1 \N \N \N f 2 140 +1319 2 3 \N \N \N f 2 167 +1320 1 1 \N \N \N t 2 128 +1321 1 2 \N \N \N f 2 97 +1322 3 3 \N \N \N f 2 114 +1323 3 2 \N \N \N f 2 145 +1324 3 1 \N \N \N f 2 176 +1325 2 3 \N \N \N f 2 134 +1326 2 2 \N \N \N f 2 165 +1327 3 2 \N \N \N f 2 128 +1328 3 3 \N \N \N f 2 97 +1329 3 1 \N \N \N f 2 159 +1330 3 1 \N \N \N f 2 132 +1331 3 2 \N \N \N f 2 101 +1332 1 1 \N \N \N t 2 108 +1333 1 3 \N \N \N f 2 146 +1334 1 2 \N \N \N f 2 177 +1335 1 2 \N \N \N f 2 189 +1336 1 3 \N \N \N f 2 158 +1337 1 2 \N \N \N f 2 115 +1338 1 1 \N \N \N t 2 146 +1339 3 3 \N \N \N f 2 132 +1340 3 2 \N \N \N f 2 163 +1341 3 1 \N \N \N f 2 101 +1342 3 2 \N \N \N f 2 129 +1343 3 3 \N \N \N f 2 98 +1344 3 1 \N \N \N f 2 160 +1345 3 3 \N \N \N f 2 189 +1346 1 1 \N \N \N t 2 121 +1347 2 3 \N \N \N f 2 114 +1348 2 2 \N \N \N f 2 145 +1349 2 1 \N \N \N f 2 176 +1350 1 3 \N \N \N f 2 138 +1351 1 2 \N \N \N f 2 169 +1352 3 3 \N \N \N f 2 188 +1353 3 3 \N \N \N f 2 118 +1354 3 2 \N \N \N f 2 149 +1355 3 1 \N \N \N f 2 180 +1356 2 3 \N \N \N f 2 128 +1357 2 2 \N \N \N f 2 159 +1358 2 1 \N \N \N f 2 190 +1359 2 2 \N \N \N f 2 142 +1360 2 3 \N \N \N f 2 111 +1361 2 1 \N \N \N f 2 173 +1362 3 2 \N \N \N f 2 125 +1363 3 1 \N \N \N f 2 156 +1364 2 2 \N \N \N f 2 136 +1365 2 3 \N \N \N f 2 105 +1366 2 1 \N \N \N f 2 167 +1367 1 3 \N \N \N f 2 178 +1368 3 3 \N \N \N f 2 191 +1369 1 2 \N \N \N f 2 106 +1370 1 3 \N \N \N f 2 118 +1371 1 1 \N \N \N t 2 137 +1372 1 2 \N \N \N f 2 149 +1373 1 1 \N \N \N t 2 180 +1374 3 3 \N \N \N f 2 117 +1375 3 2 \N \N \N f 2 148 +1376 3 1 \N \N \N f 2 179 +1377 1 2 \N \N \N f 2 186 +1378 1 3 \N \N \N f 2 155 +1379 2 2 \N \N \N f 2 124 +1380 2 1 \N \N \N f 2 155 +1381 3 3 \N \N \N f 2 181 +1382 2 1 \N \N \N f 2 121 +1383 1 1 \N \N \N t 2 123 +1384 2 1 \N \N \N f 2 192 +1385 2 3 \N \N \N f 2 130 +1386 2 2 \N \N \N f 2 161 +1387 3 1 \N \N \N f 2 120 +1388 3 3 \N \N \N f 2 172 +1389 1 3 \N \N \N f 2 143 +1390 1 1 \N \N \N t 2 131 +1391 1 2 \N \N \N f 2 100 +1392 1 2 \N \N \N f 2 174 +1393 1 1 \N \N \N t 2 133 +1394 1 2 \N \N \N f 2 102 +1395 3 3 \N \N \N f 2 179 +1396 3 1 \N \N \N f 2 124 +1397 3 1 \N \N \N f 2 188 +1398 1 1 \N \N \N t 2 184 +1399 3 3 \N \N \N f 2 126 +1400 1 3 \N \N \N f 2 122 +1401 1 2 \N \N \N f 2 153 +1402 3 2 \N \N \N f 2 157 +1403 2 1 \N \N \N f 2 119 +1404 1 1 \N \N \N t 2 129 +1405 1 2 \N \N \N f 2 98 +1406 1 3 \N \N \N f 2 170 +1407 2 1 \N \N \N f 2 127 +1408 1 3 \N \N \N f 2 114 +1409 1 2 \N \N \N f 2 145 +1410 1 1 \N \N \N t 2 176 +1411 2 3 \N \N \N f 2 184 +1412 3 3 \N \N \N f 2 185 +1413 3 2 \N \N \N f 2 189 +1414 3 3 \N \N \N f 2 158 +1415 2 2 \N \N \N f 2 129 +1416 2 3 \N \N \N f 2 98 +1417 2 1 \N \N \N f 2 160 +1418 3 1 \N \N \N f 2 100 +1419 1 1 \N \N \N t 2 182 +1420 1 3 \N \N \N f 2 120 +1421 1 2 \N \N \N f 2 151 +1422 2 2 \N \N \N f 2 188 +1423 2 3 \N \N \N f 2 157 +1424 2 3 \N \N \N f 2 176 +1425 2 3 \N \N \N f 2 139 +1426 2 2 \N \N \N f 2 170 +1427 3 1 \N \N \N f 2 117 +1428 2 3 \N \N \N f 2 186 +1429 2 3 \N \N \N f 2 144 +1430 2 2 \N \N \N f 2 175 +1431 1 3 \N \N \N f 2 110 +1432 1 2 \N \N \N f 2 141 +1433 1 1 \N \N \N t 2 172 +1434 1 3 \N \N \N f 2 162 +1435 1 1 \N \N \N t 2 114 +1436 2 2 \N \N \N f 2 121 +1437 2 1 \N \N \N f 2 152 +1438 1 3 \N \N \N f 2 117 +1439 1 2 \N \N \N f 2 148 +1440 1 1 \N \N \N t 2 179 +1441 1 3 \N \N \N f 2 185 +1442 3 3 \N \N \N f 2 134 +1443 3 2 \N \N \N f 2 165 +1444 2 2 \N \N \N f 2 191 +1445 2 3 \N \N \N f 2 160 +1446 3 2 \N \N \N f 2 142 +1447 2 2 \N \N \N f 2 115 +1448 3 3 \N \N \N f 2 111 +1449 2 1 \N \N \N f 2 146 +1450 3 1 \N \N \N f 2 173 +1451 2 1 \N \N \N f 2 132 +1452 2 2 \N \N \N f 2 101 +1453 1 2 \N \N \N f 2 134 +1454 1 3 \N \N \N f 2 103 +1455 1 1 \N \N \N t 2 165 +1456 3 1 \N \N \N f 2 126 +1457 3 3 \N \N \N f 2 165 +1458 3 2 \N \N \N f 2 192 +1459 3 3 \N \N \N f 2 161 +1460 1 2 \N \N \N f 2 142 +1461 1 3 \N \N \N f 2 111 +1462 1 1 \N \N \N t 2 173 +1463 3 3 \N \N \N f 2 142 +1464 1 2 \N \N \N f 2 121 +1465 1 1 \N \N \N t 2 152 +1466 3 2 \N \N \N f 2 173 +1467 3 1 \N \N \N f 2 116 +1468 2 1 \N \N \N f 2 115 +1469 1 3 \N \N \N f 2 134 +1470 1 3 \N \N \N f 2 107 +1471 1 2 \N \N \N f 2 138 +1472 1 2 \N \N \N f 2 165 +1473 1 1 \N \N \N t 2 169 +1474 3 3 \N \N \N f 2 138 +1475 3 2 \N \N \N f 2 169 +1476 3 1 \N \N \N f 2 103 +1477 3 2 \N \N \N f 2 116 +1478 2 2 \N \N \N f 2 119 +1479 3 1 \N \N \N f 2 147 +1480 2 1 \N \N \N f 2 150 +1481 2 1 \N \N \N f 2 123 +1482 2 2 \N \N \N f 2 117 +1483 2 1 \N \N \N f 2 148 +1484 2 3 \N \N \N f 2 169 +1485 2 3 \N \N \N f 2 137 +1486 2 2 \N \N \N f 2 168 +1487 3 2 \N \N \N f 2 110 +1488 3 1 \N \N \N f 2 141 +1489 2 1 \N \N \N f 2 100 +1490 1 2 \N \N \N f 2 136 +1491 2 1 \N \N \N f 2 102 +1492 1 3 \N \N \N f 2 105 +1493 1 1 \N \N \N t 2 167 +1494 3 2 \N \N \N f 2 186 +1495 3 2 \N \N \N f 2 118 +1496 3 3 \N \N \N f 2 155 +1497 3 1 \N \N \N f 2 149 +1498 1 2 \N \N \N f 2 183 +1499 1 3 \N \N \N f 2 152 +1500 1 2 \N \N \N f 2 181 +1501 1 1 \N \N \N t 2 97 +1502 3 2 \N \N \N f 2 114 +1503 3 1 \N \N \N f 2 145 +1504 1 3 \N \N \N f 2 150 +1505 1 2 \N \N \N f 2 118 +1506 1 1 \N \N \N t 2 149 +1507 2 3 \N \N \N f 2 183 +1508 2 3 \N \N \N f 2 163 +1509 2 1 \N \N \N f 2 109 +1510 3 2 \N \N \N f 2 144 +1511 3 3 \N \N \N f 2 113 +1512 3 1 \N \N \N f 2 175 +1513 1 1 \N \N \N t 2 188 +1514 1 3 \N \N \N f 2 126 +1515 1 2 \N \N \N f 2 157 +1516 3 1 \N \N \N f 2 133 +1517 3 2 \N \N \N f 2 102 +1518 1 1 \N \N \N t 2 104 +1519 3 1 \N \N \N f 2 97 +1520 2 3 \N \N \N f 2 159 +1521 2 2 \N \N \N f 2 190 +1522 1 3 \N \N \N f 2 188 +1523 1 3 \N \N \N f 2 132 +1524 1 2 \N \N \N f 2 163 +1525 1 1 \N \N \N t 2 118 +1526 2 2 \N \N \N f 2 134 +1527 2 3 \N \N \N f 2 103 +1528 2 1 \N \N \N f 2 165 +1529 1 3 \N \N \N f 2 133 +1530 1 2 \N \N \N f 2 164 +1531 1 3 \N \N \N f 2 187 +1532 1 3 \N \N \N f 2 135 +1533 1 2 \N \N \N f 2 166 +1534 1 1 \N \N \N t 2 110 +1535 1 3 \N \N \N f 2 167 +1536 1 3 \N \N \N f 2 141 +1537 1 2 \N \N \N f 2 172 +1538 1 2 \N \N \N f 2 143 +1539 1 3 \N \N \N f 2 112 +1540 1 1 \N \N \N t 2 174 +1541 3 1 \N \N \N f 2 187 +1542 3 3 \N \N \N f 2 125 +1543 3 2 \N \N \N f 2 156 +1544 3 3 \N \N \N f 2 177 +1545 2 3 \N \N \N f 2 118 +1546 2 2 \N \N \N f 2 149 +1547 2 1 \N \N \N f 2 180 +1548 3 3 \N \N \N f 2 183 +1549 1 2 \N \N \N f 2 184 +1550 1 3 \N \N \N f 2 153 +1551 1 1 \N \N \N t 2 102 +1552 1 2 \N \N \N f 2 135 +1553 1 3 \N \N \N f 2 104 +1554 3 2 \N \N \N f 2 119 +1555 3 1 \N \N \N f 2 150 +1556 1 1 \N \N \N t 2 166 +1557 3 3 \N \N \N f 2 115 +1558 3 2 \N \N \N f 2 146 +1559 3 1 \N \N \N f 2 177 +1560 2 2 \N \N \N f 2 122 +1561 2 1 \N \N \N f 2 153 +1562 2 3 \N \N \N f 2 180 +1563 2 3 \N \N \N f 2 177 +1564 3 3 \N \N \N f 2 143 +1565 3 2 \N \N \N f 2 174 +1566 2 1 \N \N \N f 2 108 +1567 1 2 \N \N \N f 2 108 +1568 3 1 \N \N \N f 2 112 +1569 1 1 \N \N \N t 2 139 +1570 3 1 \N \N \N f 2 115 +1571 2 1 \N \N \N f 2 144 +1572 1 2 \N \N \N f 2 126 +1573 3 3 \N \N \N f 2 106 +1574 2 2 \N \N \N f 2 113 +1575 3 2 \N \N \N f 2 137 +1576 3 1 \N \N \N f 2 168 +1577 1 1 \N \N \N t 2 157 +1578 2 2 \N \N \N f 2 187 +1579 2 3 \N \N \N f 2 156 +1580 3 3 \N \N \N f 2 108 +1581 3 2 \N \N \N f 2 139 +1582 3 1 \N \N \N f 2 170 +1583 3 1 \N \N \N f 2 135 +1584 3 2 \N \N \N f 2 104 +1585 1 3 \N \N \N f 2 181 +1586 1 3 \N \N \N f 2 169 +1587 1 1 \N \N \N t 2 116 +1588 1 1 \N \N \N t 2 187 +1589 1 3 \N \N \N f 2 125 +1590 1 2 \N \N \N f 2 156 +1591 2 1 \N \N \N f 2 184 +1592 2 3 \N \N \N f 2 122 +1593 2 2 \N \N \N f 2 153 +1594 3 1 \N \N \N f 2 127 +1595 3 3 \N \N \N f 2 164 +1596 2 1 \N \N \N f 2 125 +1597 3 1 \N \N \N f 2 185 +1598 3 3 \N \N \N f 2 123 +1599 3 2 \N \N \N f 2 154 +1600 2 3 \N \N \N f 2 117 +1601 2 2 \N \N \N f 2 148 +1602 2 1 \N \N \N f 2 179 +1603 3 3 \N \N \N f 2 168 +1604 1 1 \N \N \N t 2 189 +1605 1 3 \N \N \N f 2 127 +1606 1 2 \N \N \N f 2 158 +1607 2 3 \N \N \N f 2 192 +1608 1 3 \N \N \N f 2 182 +1609 3 3 \N \N \N f 2 146 +1610 3 2 \N \N \N f 2 177 +1611 3 1 \N \N \N f 2 129 +1612 3 2 \N \N \N f 2 98 +1613 2 3 \N \N \N f 2 165 +1614 2 1 \N \N \N f 2 106 +1615 2 1 \N \N \N f 2 118 +1616 2 3 \N \N \N f 2 109 +1617 2 2 \N \N \N f 2 140 +1618 2 1 \N \N \N f 2 171 +1619 2 1 \N \N \N f 2 116 +1620 3 1 \N \N \N f 2 184 +1621 3 3 \N \N \N f 2 122 +1622 3 2 \N \N \N f 2 153 +1623 1 1 \N \N \N t 2 134 +1624 1 2 \N \N \N f 2 103 +1625 1 3 \N \N \N f 2 129 +1626 1 1 \N \N \N t 2 122 +1627 1 2 \N \N \N f 2 160 +1628 3 3 \N \N \N f 2 180 +1629 1 1 \N \N \N t 2 191 +1630 3 1 \N \N \N f 2 143 +1631 3 2 \N \N \N f 2 112 +1632 2 3 \N \N \N f 2 135 +1633 2 2 \N \N \N f 2 166 +1634 3 1 \N \N \N f 2 131 +1635 3 2 \N \N \N f 2 100 +1636 1 2 \N \N \N f 2 110 +1637 1 1 \N \N \N t 2 141 +1638 3 3 \N \N \N f 2 192 +1639 3 1 \N \N \N f 2 144 +1640 2 1 \N \N \N f 2 120 +1641 3 2 \N \N \N f 2 113 +1642 2 3 \N \N \N f 2 148 +1643 2 2 \N \N \N f 2 179 +1644 2 2 \N \N \N f 2 181 +1645 2 3 \N \N \N f 2 150 +1646 1 3 \N \N \N f 2 179 +1647 1 3 \N \N \N f 2 190 +1648 2 3 \N \N \N f 2 171 +1649 3 3 \N \N \N f 2 131 +1650 3 2 \N \N \N f 2 162 +1651 3 2 \N \N \N f 2 133 +1652 3 3 \N \N \N f 2 102 +1653 3 1 \N \N \N f 2 164 +1654 1 2 \N \N \N f 2 131 +1655 1 3 \N \N \N f 2 100 +1656 1 1 \N \N \N t 2 162 +1657 2 2 \N \N \N f 2 183 +1658 2 3 \N \N \N f 2 152 +1659 2 2 \N \N \N f 2 108 +1660 2 1 \N \N \N f 2 139 +1661 1 3 \N \N \N f 2 137 +1662 1 2 \N \N \N f 2 168 +1663 1 3 \N \N \N f 2 171 +1664 2 2 \N \N \N f 2 109 +1665 2 1 \N \N \N f 2 140 +1666 1 2 \N \N \N f 2 127 +1667 1 1 \N \N \N t 2 158 +1668 3 2 \N \N \N f 2 188 +1669 3 3 \N \N \N f 2 157 +1670 1 2 \N \N \N f 2 129 +1671 1 3 \N \N \N f 2 98 +1672 1 1 \N \N \N t 2 160 +1673 3 1 \N \N \N f 2 189 +1674 3 3 \N \N \N f 2 127 +1675 3 2 \N \N \N f 2 158 +1676 3 1 \N \N \N f 2 108 +1677 3 1 \N \N \N f 2 106 +1678 2 2 \N \N \N f 2 125 +1679 2 1 \N \N \N f 2 156 +1680 1 1 \N \N \N t 2 142 +1681 1 2 \N \N \N f 2 111 +1682 2 1 \N \N \N f 2 136 +1683 2 2 \N \N \N f 2 105 +1684 2 3 \N \N \N f 2 173 +1685 2 3 \N \N \N f 2 168 +1686 2 1 \N \N \N f 2 135 +1687 1 2 \N \N \N f 2 117 +1688 2 2 \N \N \N f 2 104 +1689 1 1 \N \N \N t 2 148 +1690 2 2 \N \N \N f 2 132 +1691 2 3 \N \N \N f 2 101 +1692 2 1 \N \N \N f 2 163 +1693 1 2 \N \N \N f 2 192 +1694 1 3 \N \N \N f 2 161 +1695 3 3 \N \N \N f 2 129 +1696 3 2 \N \N \N f 2 160 +1697 3 1 \N \N \N f 2 191 +1698 3 1 \N \N \N f 2 99 +1699 3 3 \N \N \N f 2 159 +1700 3 2 \N \N \N f 2 190 +1701 3 2 \N \N \N f 2 130 +1702 3 3 \N \N \N f 2 99 +1703 1 1 \N \N \N t 2 113 +1704 3 1 \N \N \N f 2 161 +1705 1 2 \N \N \N f 2 123 +1706 2 1 \N \N \N f 2 111 +1707 1 1 \N \N \N t 2 154 +1708 2 3 \N \N \N f 2 164 +1709 3 1 \N \N \N f 2 136 +1710 3 2 \N \N \N f 2 105 +1711 2 1 \N \N \N f 2 112 +1712 1 1 \N \N \N t 2 185 +1713 1 3 \N \N \N f 2 123 +1714 1 2 \N \N \N f 2 154 +1715 1 1 \N \N \N t 2 125 +1716 3 2 \N \N \N f 2 181 +1717 3 3 \N \N \N f 2 150 +1718 2 1 \N \N \N f 2 104 +1719 2 1 \N \N \N f 2 188 +1720 2 3 \N \N \N f 2 126 +1721 2 2 \N \N \N f 2 157 +1722 1 3 \N \N \N f 2 173 +1723 1 3 \N \N \N f 2 176 +1724 2 2 \N \N \N f 2 128 +1725 2 3 \N \N \N f 2 97 +1726 2 1 \N \N \N f 2 159 +1727 3 2 \N \N \N f 2 121 +1728 3 1 \N \N \N f 2 152 +1729 1 1 \N \N \N t 3 231 +1730 1 2 \N \N \N f 3 200 +1731 3 2 \N \N \N f 3 229 +1732 3 3 \N \N \N f 3 198 +1733 3 1 \N \N \N f 3 260 +1734 1 1 \N \N \N t 3 227 +1735 1 2 \N \N \N f 3 196 +1736 2 1 \N \N \N f 3 221 +1737 3 1 \N \N \N f 3 285 +1738 3 3 \N \N \N f 3 223 +1739 3 2 \N \N \N f 3 254 +1740 3 1 \N \N \N f 3 201 +1741 1 2 \N \N \N f 3 223 +1742 1 1 \N \N \N t 3 254 +1743 3 3 \N \N \N f 3 204 +1744 3 2 \N \N \N f 3 235 +1745 3 1 \N \N \N f 3 266 +1746 2 3 \N \N \N f 3 228 +1747 2 2 \N \N \N f 3 259 +1748 2 3 \N \N \N f 3 260 +1749 2 3 \N \N \N f 3 211 +1750 2 2 \N \N \N f 3 242 +1751 2 1 \N \N \N f 3 273 +1752 1 3 \N \N \N f 3 204 +1753 1 2 \N \N \N f 3 235 +1754 1 1 \N \N \N t 3 266 +1755 2 1 \N \N \N f 3 194 +1756 2 3 \N \N \N f 3 255 +1757 2 2 \N \N \N f 3 286 +1758 3 3 \N \N \N f 3 210 +1759 2 3 \N \N \N f 3 234 +1760 2 3 \N \N \N f 3 236 +1761 3 2 \N \N \N f 3 241 +1762 2 2 \N \N \N f 3 265 +1763 2 2 \N \N \N f 3 267 +1764 3 1 \N \N \N f 3 272 +1765 1 3 \N \N \N f 3 230 +1766 1 2 \N \N \N f 3 261 +1767 2 1 \N \N \N f 3 200 +1768 1 2 \N \N \N f 3 217 +1769 2 3 \N \N \N f 3 232 +1770 1 1 \N \N \N t 3 248 +1771 2 2 \N \N \N f 3 263 +1772 1 2 \N \N \N f 3 203 +1773 1 1 \N \N \N t 3 234 +1774 2 1 \N \N \N f 3 196 +1775 1 3 \N \N \N f 3 284 +1776 2 2 \N \N \N f 3 282 +1777 1 2 \N \N \N f 3 215 +1778 2 3 \N \N \N f 3 251 +1779 1 1 \N \N \N t 3 246 +1780 1 3 \N \N \N f 3 275 +1781 1 1 \N \N \N t 3 224 +1782 1 2 \N \N \N f 3 193 +1783 2 2 \N \N \N f 3 224 +1784 2 3 \N \N \N f 3 193 +1785 2 1 \N \N \N f 3 255 +1786 3 3 \N \N \N f 3 261 +1787 3 1 \N \N \N f 3 230 +1788 3 2 \N \N \N f 3 199 +1789 1 1 \N \N \N t 3 199 +1790 1 1 \N \N \N t 3 238 +1791 1 2 \N \N \N f 3 207 +1792 2 1 \N \N \N f 3 213 +1793 3 3 \N \N \N f 3 278 +1794 1 3 \N \N \N f 3 224 +1795 1 2 \N \N \N f 3 255 +1796 1 1 \N \N \N t 3 286 +1797 1 3 \N \N \N f 3 232 +1798 1 2 \N \N \N f 3 263 +1799 3 1 \N \N \N f 3 194 +1800 2 1 \N \N \N f 3 197 +1801 2 2 \N \N \N f 3 279 +1802 2 3 \N \N \N f 3 248 +1803 3 2 \N \N \N f 3 223 +1804 3 3 \N \N \N f 3 243 +1805 3 1 \N \N \N f 3 254 +1806 3 2 \N \N \N f 3 274 +1807 1 2 \N \N \N f 3 232 +1808 1 3 \N \N \N f 3 201 +1809 1 1 \N \N \N t 3 263 +1810 3 1 \N \N \N f 3 198 +1811 3 1 \N \N \N f 3 195 +1812 2 1 \N \N \N f 3 281 +1813 2 3 \N \N \N f 3 219 +1814 2 2 \N \N \N f 3 250 +1815 3 2 \N \N \N f 3 215 +1816 3 1 \N \N \N f 3 246 +1817 2 2 \N \N \N f 3 288 +1818 2 3 \N \N \N f 3 257 +1819 1 1 \N \N \N t 3 218 +1820 2 3 \N \N \N f 3 280 +1821 1 2 \N \N \N f 3 285 +1822 1 3 \N \N \N f 3 254 +1823 1 3 \N \N \N f 3 256 +1824 1 2 \N \N \N f 3 287 +1825 3 2 \N \N \N f 3 222 +1826 3 1 \N \N \N f 3 253 +1827 3 2 \N \N \N f 3 283 +1828 3 3 \N \N \N f 3 252 +1829 2 1 \N \N \N f 3 223 +1830 3 1 \N \N \N f 3 207 +1831 3 2 \N \N \N f 3 282 +1832 3 3 \N \N \N f 3 251 +1833 2 1 \N \N \N f 3 206 +1834 2 1 \N \N \N f 3 204 +1835 1 3 \N \N \N f 3 240 +1836 1 2 \N \N \N f 3 271 +1837 3 2 \N \N \N f 3 280 +1838 3 3 \N \N \N f 3 249 +1839 1 2 \N \N \N f 3 278 +1840 1 3 \N \N \N f 3 247 +1841 2 3 \N \N \N f 3 264 +1842 3 2 \N \N \N f 3 238 +1843 3 3 \N \N \N f 3 207 +1844 3 1 \N \N \N f 3 269 +1845 1 1 \N \N \N t 3 195 +1846 3 1 \N \N \N f 3 218 +1847 3 1 \N \N \N f 3 216 +1848 3 1 \N \N \N f 3 226 +1849 3 2 \N \N \N f 3 195 +1850 3 3 \N \N \N f 3 255 +1851 3 2 \N \N \N f 3 286 +1852 1 3 \N \N \N f 3 260 +1853 1 3 \N \N \N f 3 236 +1854 1 2 \N \N \N f 3 267 +1855 1 3 \N \N \N f 3 263 +1856 2 3 \N \N \N f 3 288 +1857 3 1 \N \N \N f 3 222 +1858 2 3 \N \N \N f 3 204 +1859 1 2 \N \N \N f 3 211 +1860 2 2 \N \N \N f 3 235 +1861 1 1 \N \N \N t 3 242 +1862 2 1 \N \N \N f 3 266 +1863 2 2 \N \N \N f 3 238 +1864 2 3 \N \N \N f 3 207 +1865 2 1 \N \N \N f 3 269 +1866 2 3 \N \N \N f 3 284 +1867 2 1 \N \N \N f 3 278 +1868 2 3 \N \N \N f 3 216 +1869 2 2 \N \N \N f 3 247 +1870 2 2 \N \N \N f 3 205 +1871 2 1 \N \N \N f 3 236 +1872 1 3 \N \N \N f 3 243 +1873 1 2 \N \N \N f 3 274 +1874 1 1 \N \N \N t 3 282 +1875 1 3 \N \N \N f 3 220 +1876 1 2 \N \N \N f 3 251 +1877 3 2 \N \N \N f 3 288 +1878 3 3 \N \N \N f 3 257 +1879 3 2 \N \N \N f 3 203 +1880 3 1 \N \N \N f 3 234 +1881 3 3 \N \N \N f 3 259 +1882 2 3 \N \N \N f 3 268 +1883 2 3 \N \N \N f 3 213 +1884 2 2 \N \N \N f 3 244 +1885 2 1 \N \N \N f 3 275 +1886 2 3 \N \N \N f 3 285 +1887 1 1 \N \N \N t 3 278 +1888 1 3 \N \N \N f 3 216 +1889 1 2 \N \N \N f 3 247 +1890 3 1 \N \N \N f 3 228 +1891 3 2 \N \N \N f 3 197 +1892 3 3 \N \N \N f 3 287 +1893 1 2 \N \N \N f 3 219 +1894 1 1 \N \N \N t 3 250 +1895 3 1 \N \N \N f 3 225 +1896 3 2 \N \N \N f 3 194 +1897 3 3 \N \N \N f 3 231 +1898 3 2 \N \N \N f 3 262 +1899 1 3 \N \N \N f 3 279 +1900 1 2 \N \N \N f 3 238 +1901 2 1 \N \N \N f 3 238 +1902 2 2 \N \N \N f 3 207 +1903 1 3 \N \N \N f 3 207 +1904 1 1 \N \N \N t 3 269 +1905 1 1 \N \N \N t 3 215 +1906 2 3 \N \N \N f 3 263 +1907 3 2 \N \N \N f 3 231 +1908 3 3 \N \N \N f 3 200 +1909 3 1 \N \N \N f 3 262 +1910 1 3 \N \N \N f 3 277 +1911 2 1 \N \N \N f 3 220 +1912 2 3 \N \N \N f 3 265 +1913 2 2 \N \N \N f 3 217 +1914 2 1 \N \N \N f 3 248 +1915 3 3 \N \N \N f 3 212 +1916 3 2 \N \N \N f 3 243 +1917 3 1 \N \N \N f 3 274 +1918 1 1 \N \N \N t 3 201 +1919 2 2 \N \N \N f 3 213 +1920 2 1 \N \N \N f 3 244 +1921 2 1 \N \N \N f 3 240 +1922 2 2 \N \N \N f 3 209 +1923 1 3 \N \N \N f 3 228 +1924 1 2 \N \N \N f 3 259 +1925 3 2 \N \N \N f 3 278 +1926 3 3 \N \N \N f 3 247 +1927 2 3 \N \N \N f 3 271 +1928 1 3 \N \N \N f 3 283 +1929 2 1 \N \N \N f 3 282 +1930 2 3 \N \N \N f 3 220 +1931 2 2 \N \N \N f 3 251 +1932 3 1 \N \N \N f 3 210 +1933 3 1 \N \N \N f 3 278 +1934 3 3 \N \N \N f 3 216 +1935 3 2 \N \N \N f 3 247 +1936 3 3 \N \N \N f 3 275 +1937 2 2 \N \N \N f 3 210 +1938 2 1 \N \N \N f 3 241 +1939 1 2 \N \N \N f 3 218 +1940 1 1 \N \N \N t 3 249 +1941 2 2 \N \N \N f 3 216 +1942 2 1 \N \N \N f 3 247 +1943 2 1 \N \N \N f 3 209 +1944 3 2 \N \N \N f 3 240 +1945 3 3 \N \N \N f 3 209 +1946 3 1 \N \N \N f 3 271 +1947 1 3 \N \N \N f 3 268 +1948 2 3 \N \N \N f 3 259 +1949 1 1 \N \N \N t 3 200 +1950 3 1 \N \N \N f 3 209 +1951 1 1 \N \N \N t 3 228 +1952 1 2 \N \N \N f 3 197 +1953 1 1 \N \N \N t 3 220 +1954 1 3 \N \N \N f 3 272 +1955 1 1 \N \N \N t 3 207 +1956 3 3 \N \N \N f 3 258 +1957 2 2 \N \N \N f 3 231 +1958 2 3 \N \N \N f 3 200 +1959 2 1 \N \N \N f 3 262 +1960 2 1 \N \N \N f 3 232 +1961 2 2 \N \N \N f 3 201 +1962 2 1 \N \N \N f 3 195 +1963 1 2 \N \N \N f 3 227 +1964 1 3 \N \N \N f 3 196 +1965 1 1 \N \N \N t 3 258 +1966 1 1 \N \N \N t 3 216 +1967 1 2 \N \N \N f 3 279 +1968 2 2 \N \N \N f 3 229 +1969 2 3 \N \N \N f 3 198 +1970 1 3 \N \N \N f 3 248 +1971 2 1 \N \N \N f 3 260 +1972 1 3 \N \N \N f 3 244 +1973 1 2 \N \N \N f 3 275 +1974 3 3 \N \N \N f 3 232 +1975 2 3 \N \N \N f 3 245 +1976 3 2 \N \N \N f 3 263 +1977 2 2 \N \N \N f 3 276 +1978 1 3 \N \N \N f 3 203 +1979 1 2 \N \N \N f 3 234 +1980 1 1 \N \N \N t 3 265 +1981 3 3 \N \N \N f 3 241 +1982 1 3 \N \N \N f 3 264 +1983 3 2 \N \N \N f 3 272 +1984 3 3 \N \N \N f 3 234 +1985 3 2 \N \N \N f 3 265 +1986 2 1 \N \N \N f 3 279 +1987 2 3 \N \N \N f 3 217 +1988 2 2 \N \N \N f 3 248 +1989 2 3 \N \N \N f 3 240 +1990 2 2 \N \N \N f 3 271 +1991 1 3 \N \N \N f 3 265 +1992 2 1 \N \N \N f 3 203 +1993 1 2 \N \N \N f 3 224 +1994 1 3 \N \N \N f 3 193 +1995 1 1 \N \N \N t 3 255 +1996 1 2 \N \N \N f 3 206 +1997 1 1 \N \N \N t 3 237 +1998 2 2 \N \N \N f 3 239 +1999 2 3 \N \N \N f 3 208 +2000 2 1 \N \N \N f 3 270 +2001 1 3 \N \N \N f 3 245 +2002 1 2 \N \N \N f 3 276 +2003 1 2 \N \N \N f 3 282 +2004 2 1 \N \N \N f 3 215 +2005 1 3 \N \N \N f 3 251 +2006 1 1 \N \N \N t 3 281 +2007 1 3 \N \N \N f 3 219 +2008 1 2 \N \N \N f 3 250 +2009 3 1 \N \N \N f 3 280 +2010 3 3 \N \N \N f 3 218 +2011 3 2 \N \N \N f 3 249 +2012 3 3 \N \N \N f 3 238 +2013 3 2 \N \N \N f 3 269 +2014 1 3 \N \N \N f 3 281 +2015 3 3 \N \N \N f 3 267 +2016 2 2 \N \N \N f 3 232 +2017 2 3 \N \N \N f 3 201 +2018 2 1 \N \N \N f 3 263 +2019 2 3 \N \N \N f 3 269 +2020 3 1 \N \N \N f 3 219 +2021 2 1 \N \N \N f 3 207 +2022 2 1 \N \N \N f 3 211 +2023 3 2 \N \N \N f 3 277 +2024 3 3 \N \N \N f 3 246 +2025 1 2 \N \N \N f 3 226 +2026 1 3 \N \N \N f 3 195 +2027 1 1 \N \N \N t 3 257 +2028 2 2 \N \N \N f 3 284 +2029 2 3 \N \N \N f 3 253 +2030 1 3 \N \N \N f 3 235 +2031 1 2 \N \N \N f 3 266 +2032 3 3 \N \N \N f 3 264 +2033 3 1 \N \N \N f 3 284 +2034 3 3 \N \N \N f 3 222 +2035 3 2 \N \N \N f 3 253 +2036 3 2 \N \N \N f 3 224 +2037 3 2 \N \N \N f 3 226 +2038 3 3 \N \N \N f 3 195 +2039 3 3 \N \N \N f 3 193 +2040 3 1 \N \N \N f 3 255 +2041 3 1 \N \N \N f 3 257 +2042 2 3 \N \N \N f 3 261 +2043 2 2 \N \N \N f 3 222 +2044 2 1 \N \N \N f 3 253 +2045 1 1 \N \N \N t 3 240 +2046 1 2 \N \N \N f 3 209 +2047 3 3 \N \N \N f 3 262 +2048 3 1 \N \N \N f 3 239 +2049 3 2 \N \N \N f 3 208 +2050 1 3 \N \N \N f 3 205 +2051 1 2 \N \N \N f 3 236 +2052 1 1 \N \N \N t 3 267 +2053 3 2 \N \N \N f 3 214 +2054 3 1 \N \N \N f 3 245 +2055 3 3 \N \N \N f 3 283 +2056 3 2 \N \N \N f 3 212 +2057 3 1 \N \N \N f 3 243 +2058 2 1 \N \N \N f 3 212 +2059 3 3 \N \N \N f 3 270 +2060 1 3 \N \N \N f 3 280 +2061 3 3 \N \N \N f 3 282 +2062 3 3 \N \N \N f 3 229 +2063 3 2 \N \N \N f 3 260 +2064 3 1 \N \N \N f 3 215 +2065 3 1 \N \N \N f 3 227 +2066 3 2 \N \N \N f 3 196 +2067 2 3 \N \N \N f 3 227 +2068 2 2 \N \N \N f 3 258 +2069 2 1 \N \N \N f 3 230 +2070 2 2 \N \N \N f 3 199 +2071 1 1 \N \N \N t 3 203 +2072 2 2 \N \N \N f 3 220 +2073 2 2 \N \N \N f 3 227 +2074 2 3 \N \N \N f 3 196 +2075 2 1 \N \N \N f 3 251 +2076 2 1 \N \N \N f 3 258 +2077 3 1 \N \N \N f 3 211 +2078 2 1 \N \N \N f 3 224 +2079 2 2 \N \N \N f 3 193 +2080 3 2 \N \N \N f 3 211 +2081 3 1 \N \N \N f 3 242 +2082 1 3 \N \N \N f 3 274 +2083 3 3 \N \N \N f 3 266 +2084 2 3 \N \N \N f 3 244 +2085 2 2 \N \N \N f 3 275 +2086 2 3 \N \N \N f 3 272 +2087 1 3 \N \N \N f 3 212 +2088 1 2 \N \N \N f 3 243 +2089 1 1 \N \N \N t 3 274 +2090 2 1 \N \N \N f 3 283 +2091 2 3 \N \N \N f 3 221 +2092 2 2 \N \N \N f 3 252 +2093 3 3 \N \N \N f 3 285 +2094 2 3 \N \N \N f 3 278 +2095 1 3 \N \N \N f 3 231 +2096 1 2 \N \N \N f 3 262 +2097 2 3 \N \N \N f 3 274 +2098 3 1 \N \N \N f 3 199 +2099 2 3 \N \N \N f 3 225 +2100 2 2 \N \N \N f 3 256 +2101 2 1 \N \N \N f 3 287 +2102 2 3 \N \N \N f 3 276 +2103 1 2 \N \N \N f 3 280 +2104 1 3 \N \N \N f 3 249 +2105 3 2 \N \N \N f 3 232 +2106 3 3 \N \N \N f 3 201 +2107 3 1 \N \N \N f 3 263 +2108 1 3 \N \N \N f 3 239 +2109 1 2 \N \N \N f 3 270 +2110 3 1 \N \N \N f 3 288 +2111 3 3 \N \N \N f 3 226 +2112 3 2 \N \N \N f 3 257 +2113 1 1 \N \N \N t 3 212 +2114 3 2 \N \N \N f 3 281 +2115 3 3 \N \N \N f 3 250 +2116 3 2 \N \N \N f 3 205 +2117 3 1 \N \N \N f 3 236 +2118 1 2 \N \N \N f 3 230 +2119 1 3 \N \N \N f 3 199 +2120 1 1 \N \N \N t 3 261 +2121 1 2 \N \N \N f 3 222 +2122 1 1 \N \N \N t 3 253 +2123 3 1 \N \N \N f 3 282 +2124 3 3 \N \N \N f 3 220 +2125 3 2 \N \N \N f 3 251 +2126 2 1 \N \N \N f 3 277 +2127 2 3 \N \N \N f 3 215 +2128 2 2 \N \N \N f 3 246 +2129 3 3 \N \N \N f 3 276 +2130 1 3 \N \N \N f 3 288 +2131 2 2 \N \N \N f 3 283 +2132 2 3 \N \N \N f 3 252 +2133 3 2 \N \N \N f 3 220 +2134 3 1 \N \N \N f 3 251 +2135 3 2 \N \N \N f 3 217 +2136 3 1 \N \N \N f 3 248 +2137 3 1 \N \N \N f 3 213 +2138 1 3 \N \N \N f 3 233 +2139 1 2 \N \N \N f 3 264 +2140 3 1 \N \N \N f 3 202 +2141 2 3 \N \N \N f 3 224 +2142 2 2 \N \N \N f 3 255 +2143 2 1 \N \N \N f 3 286 +2144 1 1 \N \N \N t 3 226 +2145 1 2 \N \N \N f 3 195 +2146 2 1 \N \N \N f 3 227 +2147 2 2 \N \N \N f 3 196 +2148 1 3 \N \N \N f 3 237 +2149 1 2 \N \N \N f 3 268 +2150 1 1 \N \N \N t 3 193 +2151 1 3 \N \N \N f 3 210 +2152 1 2 \N \N \N f 3 241 +2153 1 1 \N \N \N t 3 272 +2154 1 2 \N \N \N f 3 216 +2155 1 1 \N \N \N t 3 247 +2156 1 3 \N \N \N f 3 285 +2157 2 2 \N \N \N f 3 214 +2158 2 1 \N \N \N f 3 245 +2159 3 1 \N \N \N f 3 283 +2160 3 1 \N \N \N f 3 240 +2161 3 3 \N \N \N f 3 221 +2162 3 2 \N \N \N f 3 209 +2163 3 2 \N \N \N f 3 252 +2164 2 1 \N \N \N f 3 216 +2165 2 3 \N \N \N f 3 235 +2166 1 3 \N \N \N f 3 261 +2167 2 2 \N \N \N f 3 266 +2168 1 1 \N \N \N t 3 217 +2169 1 3 \N \N \N f 3 255 +2170 1 2 \N \N \N f 3 286 +2171 2 2 \N \N \N f 3 285 +2172 3 2 \N \N \N f 3 216 +2173 3 1 \N \N \N f 3 247 +2174 2 3 \N \N \N f 3 254 +2175 3 3 \N \N \N f 3 269 +2176 3 3 \N \N \N f 3 206 +2177 3 2 \N \N \N f 3 237 +2178 3 1 \N \N \N f 3 268 +2179 2 2 \N \N \N f 3 240 +2180 2 3 \N \N \N f 3 209 +2181 2 3 \N \N \N f 3 242 +2182 2 1 \N \N \N f 3 271 +2183 2 2 \N \N \N f 3 273 +2184 3 3 \N \N \N f 3 227 +2185 3 3 \N \N \N f 3 214 +2186 3 2 \N \N \N f 3 245 +2187 3 2 \N \N \N f 3 258 +2188 3 1 \N \N \N f 3 276 +2189 2 1 \N \N \N f 3 239 +2190 2 2 \N \N \N f 3 208 +2191 2 2 \N \N \N f 3 212 +2192 2 1 \N \N \N f 3 243 +2193 1 2 \N \N \N f 3 210 +2194 1 1 \N \N \N t 3 241 +2195 1 3 \N \N \N f 3 227 +2196 1 2 \N \N \N f 3 258 +2197 1 3 \N \N \N f 3 262 +2198 3 3 \N \N \N f 3 235 +2199 3 2 \N \N \N f 3 266 +2200 1 2 \N \N \N f 3 284 +2201 1 3 \N \N \N f 3 253 +2202 3 1 \N \N \N f 3 193 +2203 1 1 \N \N \N t 3 209 +2204 1 3 \N \N \N f 3 282 +2205 2 2 \N \N \N f 3 281 +2206 1 2 \N \N \N f 3 288 +2207 2 3 \N \N \N f 3 250 +2208 1 3 \N \N \N f 3 257 +2209 1 1 \N \N \N t 3 221 +2210 3 2 \N \N \N f 3 219 +2211 3 1 \N \N \N f 3 250 +2212 1 2 \N \N \N f 3 225 +2213 1 3 \N \N \N f 3 194 +2214 1 1 \N \N \N t 3 256 +2215 2 1 \N \N \N f 3 218 +2216 1 2 \N \N \N f 3 213 +2217 1 1 \N \N \N t 3 244 +2218 1 2 \N \N \N f 3 229 +2219 1 3 \N \N \N f 3 198 +2220 2 3 \N \N \N f 3 206 +2221 2 2 \N \N \N f 3 237 +2222 1 1 \N \N \N t 3 260 +2223 2 1 \N \N \N f 3 268 +2224 3 3 \N \N \N f 3 233 +2225 3 2 \N \N \N f 3 264 +2226 3 3 \N \N \N f 3 230 +2227 3 2 \N \N \N f 3 261 +2228 2 1 \N \N \N f 3 214 +2229 2 1 \N \N \N f 3 198 +2230 1 1 \N \N \N t 3 205 +2231 3 3 \N \N \N f 3 245 +2232 3 2 \N \N \N f 3 276 +2233 1 3 \N \N \N f 3 269 +2234 2 2 \N \N \N f 3 228 +2235 2 3 \N \N \N f 3 197 +2236 2 1 \N \N \N f 3 259 +2237 1 1 \N \N \N t 3 202 +2238 2 2 \N \N \N f 3 211 +2239 2 1 \N \N \N f 3 242 +2240 2 2 \N \N \N f 3 287 +2241 2 3 \N \N \N f 3 256 +2242 1 3 \N \N \N f 3 259 +2243 1 1 \N \N \N t 3 197 +2244 2 3 \N \N \N f 3 238 +2245 2 2 \N \N \N f 3 269 +2246 2 1 \N \N \N f 3 219 +2247 3 1 \N \N \N f 3 205 +2248 3 2 \N \N \N f 3 287 +2249 3 3 \N \N \N f 3 256 +2250 1 1 \N \N \N t 3 196 +2251 3 3 \N \N \N f 3 237 +2252 3 2 \N \N \N f 3 268 +2253 2 3 \N \N \N f 3 267 +2254 3 3 \N \N \N f 3 265 +2255 3 3 \N \N \N f 3 279 +2256 1 3 \N \N \N f 3 229 +2257 3 2 \N \N \N f 3 221 +2258 2 3 \N \N \N f 3 210 +2259 3 1 \N \N \N f 3 252 +2260 2 2 \N \N \N f 3 241 +2261 1 2 \N \N \N f 3 260 +2262 2 1 \N \N \N f 3 272 +2263 1 3 \N \N \N f 3 206 +2264 1 2 \N \N \N f 3 237 +2265 1 1 \N \N \N t 3 268 +2266 1 2 \N \N \N f 3 239 +2267 1 3 \N \N \N f 3 208 +2268 1 1 \N \N \N t 3 270 +2269 2 3 \N \N \N f 3 241 +2270 2 2 \N \N \N f 3 272 +2271 3 1 \N \N \N f 3 197 +2272 3 3 \N \N \N f 3 225 +2273 3 2 \N \N \N f 3 256 +2274 3 1 \N \N \N f 3 287 +2275 2 3 \N \N \N f 3 233 +2276 2 2 \N \N \N f 3 264 +2277 2 1 \N \N \N f 3 199 +2278 1 1 \N \N \N t 3 285 +2279 1 3 \N \N \N f 3 223 +2280 1 2 \N \N \N f 3 254 +2281 2 2 \N \N \N f 3 278 +2282 2 3 \N \N \N f 3 247 +2283 2 2 \N \N \N f 3 204 +2284 2 1 \N \N \N f 3 235 +2285 1 1 \N \N \N t 3 284 +2286 1 3 \N \N \N f 3 222 +2287 1 2 \N \N \N f 3 253 +2288 1 1 \N \N \N t 3 232 +2289 1 2 \N \N \N f 3 201 +2290 2 3 \N \N \N f 3 287 +2291 3 1 \N \N \N f 3 231 +2292 3 2 \N \N \N f 3 200 +2293 2 3 \N \N \N f 3 275 +2294 3 2 \N \N \N f 3 213 +2295 3 1 \N \N \N f 3 244 +2296 2 1 \N \N \N f 3 222 +2297 3 1 \N \N \N f 3 232 +2298 3 2 \N \N \N f 3 201 +2299 2 1 \N \N \N f 3 228 +2300 2 2 \N \N \N f 3 197 +2301 2 2 \N \N \N f 3 225 +2302 2 3 \N \N \N f 3 194 +2303 2 1 \N \N \N f 3 256 +2304 2 1 \N \N \N f 3 226 +2305 2 2 \N \N \N f 3 195 +2306 3 2 \N \N \N f 3 284 +2307 3 3 \N \N \N f 3 253 +2308 3 2 \N \N \N f 3 225 +2309 3 3 \N \N \N f 3 194 +2310 3 1 \N \N \N f 3 256 +2311 3 3 \N \N \N f 3 274 +2312 1 2 \N \N \N f 3 220 +2313 1 1 \N \N \N t 3 251 +2314 2 3 \N \N \N f 3 281 +2315 1 1 \N \N \N t 3 288 +2316 1 3 \N \N \N f 3 226 +2317 1 2 \N \N \N f 3 257 +2318 3 1 \N \N \N f 3 238 +2319 3 2 \N \N \N f 3 207 +2320 3 1 \N \N \N f 3 212 +2321 1 1 \N \N \N t 3 211 +2322 1 3 \N \N \N f 3 202 +2323 1 2 \N \N \N f 3 233 +2324 1 1 \N \N \N t 3 264 +2325 3 3 \N \N \N f 3 239 +2326 3 2 \N \N \N f 3 270 +2327 3 2 \N \N \N f 3 228 +2328 3 3 \N \N \N f 3 197 +2329 3 1 \N \N \N f 3 259 +2330 1 1 \N \N \N t 3 230 +2331 1 2 \N \N \N f 3 199 +2332 3 1 \N \N \N f 3 224 +2333 3 2 \N \N \N f 3 193 +2334 3 3 \N \N \N f 3 271 +2335 2 3 \N \N \N f 3 214 +2336 2 2 \N \N \N f 3 245 +2337 2 1 \N \N \N f 3 276 +2338 2 3 \N \N \N f 3 212 +2339 2 2 \N \N \N f 3 243 +2340 2 1 \N \N \N f 3 274 +2341 1 1 \N \N \N t 3 214 +2342 3 3 \N \N \N f 3 277 +2343 2 3 \N \N \N f 3 266 +2344 3 3 \N \N \N f 3 273 +2345 2 1 \N \N \N f 3 288 +2346 2 3 \N \N \N f 3 226 +2347 2 2 \N \N \N f 3 257 +2348 1 3 \N \N \N f 3 278 +2349 1 3 \N \N \N f 3 241 +2350 1 2 \N \N \N f 3 272 +2351 1 1 \N \N \N t 3 223 +2352 1 2 \N \N \N f 3 204 +2353 1 1 \N \N \N t 3 235 +2354 3 3 \N \N \N f 3 281 +2355 2 3 \N \N \N f 3 283 +2356 1 3 \N \N \N f 3 276 +2357 2 3 \N \N \N f 3 229 +2358 2 2 \N \N \N f 3 260 +2359 1 3 \N \N \N f 3 214 +2360 1 2 \N \N \N f 3 245 +2361 1 1 \N \N \N t 3 276 +2362 2 1 \N \N \N f 3 231 +2363 2 2 \N \N \N f 3 200 +2364 2 3 \N \N \N f 3 237 +2365 2 2 \N \N \N f 3 268 +2366 1 3 \N \N \N f 3 213 +2367 1 2 \N \N \N f 3 244 +2368 1 1 \N \N \N t 3 275 +2369 1 2 \N \N \N f 3 214 +2370 1 1 \N \N \N t 3 245 +2371 1 3 \N \N \N f 3 238 +2372 1 2 \N \N \N f 3 269 +2373 3 3 \N \N \N f 3 202 +2374 3 2 \N \N \N f 3 233 +2375 3 1 \N \N \N f 3 264 +2376 1 3 \N \N \N f 3 267 +2377 3 3 \N \N \N f 3 203 +2378 3 2 \N \N \N f 3 234 +2379 3 1 \N \N \N f 3 265 +2380 1 1 \N \N \N t 3 283 +2381 1 3 \N \N \N f 3 221 +2382 1 2 \N \N \N f 3 252 +2383 3 1 \N \N \N f 3 277 +2384 3 3 \N \N \N f 3 215 +2385 3 2 \N \N \N f 3 246 +2386 3 2 \N \N \N f 3 210 +2387 3 1 \N \N \N f 3 241 +2388 3 3 \N \N \N f 3 224 +2389 2 2 \N \N \N f 3 223 +2390 2 1 \N \N \N f 3 254 +2391 3 2 \N \N \N f 3 255 +2392 3 1 \N \N \N f 3 286 +2393 3 1 \N \N \N f 3 203 +2394 1 1 \N \N \N t 3 210 +2395 2 2 \N \N \N f 3 219 +2396 2 1 \N \N \N f 3 250 +2397 2 3 \N \N \N f 3 262 +2398 2 3 \N \N \N f 3 231 +2399 2 2 \N \N \N f 3 262 +2400 2 1 \N \N \N f 3 193 +2401 2 2 \N \N \N f 3 280 +2402 2 3 \N \N \N f 3 249 +2403 2 1 \N \N \N f 3 201 +2404 1 2 \N \N \N f 3 205 +2405 1 1 \N \N \N t 3 236 +2406 3 2 \N \N \N f 3 218 +2407 3 1 \N \N \N f 3 249 +2408 3 2 \N \N \N f 3 227 +2409 3 3 \N \N \N f 3 196 +2410 3 1 \N \N \N f 3 258 +2411 2 3 \N \N \N f 3 239 +2412 2 2 \N \N \N f 3 270 +2413 2 2 \N \N \N f 3 277 +2414 2 3 \N \N \N f 3 246 +2415 1 1 \N \N \N t 3 206 +2416 1 2 \N \N \N f 3 202 +2417 1 1 \N \N \N t 3 208 +2418 1 1 \N \N \N t 3 233 +2419 3 1 \N \N \N f 3 279 +2420 3 3 \N \N \N f 3 217 +2421 3 2 \N \N \N f 3 248 +2422 3 3 \N \N \N f 3 240 +2423 3 2 \N \N \N f 3 271 +2424 3 3 \N \N \N f 3 244 +2425 3 2 \N \N \N f 3 275 +2426 2 1 \N \N \N f 3 208 +2427 1 3 \N \N \N f 3 258 +2428 2 1 \N \N \N f 3 205 +2429 2 3 \N \N \N f 3 282 +2430 2 1 \N \N \N f 3 217 +2431 2 2 \N \N \N f 3 203 +2432 2 1 \N \N \N f 3 234 +2433 3 1 \N \N \N f 3 200 +2434 1 1 \N \N \N t 3 198 +2435 1 3 \N \N \N f 3 270 +2436 3 2 \N \N \N f 3 279 +2437 3 3 \N \N \N f 3 248 +2438 2 3 \N \N \N f 3 243 +2439 2 2 \N \N \N f 3 274 +2440 3 1 \N \N \N f 3 196 +2441 1 1 \N \N \N t 3 213 +2442 1 1 \N \N \N t 3 229 +2443 1 2 \N \N \N f 3 198 +2444 3 3 \N \N \N f 3 280 +2445 3 1 \N \N \N f 3 206 +2446 1 2 \N \N \N f 3 281 +2447 3 2 \N \N \N f 3 230 +2448 3 3 \N \N \N f 3 199 +2449 1 3 \N \N \N f 3 250 +2450 3 1 \N \N \N f 3 261 +2451 1 3 \N \N \N f 3 242 +2452 1 2 \N \N \N f 3 273 +2453 1 3 \N \N \N f 3 266 +2454 1 2 \N \N \N f 3 277 +2455 1 3 \N \N \N f 3 246 +2456 2 2 \N \N \N f 3 226 +2457 2 3 \N \N \N f 3 195 +2458 2 1 \N \N \N f 3 257 +2459 3 3 \N \N \N f 3 272 +2460 2 1 \N \N \N f 3 202 +2461 3 1 \N \N \N f 3 281 +2462 3 3 \N \N \N f 3 219 +2463 3 1 \N \N \N f 3 204 +2464 3 2 \N \N \N f 3 250 +2465 2 1 \N \N \N f 3 284 +2466 2 3 \N \N \N f 3 222 +2467 1 2 \N \N \N f 3 221 +2468 1 1 \N \N \N t 3 252 +2469 2 2 \N \N \N f 3 253 +2470 1 2 \N \N \N f 3 228 +2471 1 3 \N \N \N f 3 197 +2472 1 1 \N \N \N t 3 259 +2473 1 1 \N \N \N t 3 194 +2474 1 2 \N \N \N f 3 240 +2475 1 3 \N \N \N f 3 209 +2476 1 1 \N \N \N t 3 271 +2477 3 3 \N \N \N f 3 260 +2478 2 3 \N \N \N f 3 279 +2479 3 3 \N \N \N f 3 242 +2480 3 2 \N \N \N f 3 273 +2481 1 3 \N \N \N f 3 211 +2482 1 2 \N \N \N f 3 242 +2483 1 1 \N \N \N t 3 273 +2484 1 2 \N \N \N f 3 212 +2485 1 1 \N \N \N t 3 243 +2486 2 3 \N \N \N f 3 230 +2487 2 2 \N \N \N f 3 261 +2488 2 2 \N \N \N f 3 202 +2489 2 1 \N \N \N f 3 233 +2490 3 3 \N \N \N f 3 268 +2491 2 2 \N \N \N f 3 230 +2492 2 3 \N \N \N f 3 199 +2493 2 1 \N \N \N f 3 261 +2494 1 1 \N \N \N t 3 279 +2495 1 3 \N \N \N f 3 217 +2496 1 2 \N \N \N f 3 248 +2497 2 3 \N \N \N f 3 205 +2498 2 2 \N \N \N f 3 236 +2499 2 1 \N \N \N f 3 267 +2500 3 3 \N \N \N f 3 228 +2501 3 2 \N \N \N f 3 259 +2502 2 3 \N \N \N f 3 258 +2503 2 2 \N \N \N f 3 206 +2504 2 1 \N \N \N f 3 237 +2505 3 2 \N \N \N f 3 239 +2506 3 3 \N \N \N f 3 208 +2507 3 1 \N \N \N f 3 270 +2508 2 2 \N \N \N f 3 218 +2509 2 1 \N \N \N f 3 249 +2510 3 2 \N \N \N f 3 285 +2511 3 3 \N \N \N f 3 254 +2512 1 3 \N \N \N f 3 225 +2513 1 2 \N \N \N f 3 256 +2514 1 1 \N \N \N t 3 287 +2515 1 1 \N \N \N t 3 222 +2516 3 3 \N \N \N f 3 211 +2517 3 2 \N \N \N f 3 242 +2518 3 1 \N \N \N f 3 273 +2519 3 1 \N \N \N f 3 208 +2520 2 1 \N \N \N f 3 225 +2521 2 2 \N \N \N f 3 194 +2522 1 1 \N \N \N t 3 277 +2523 1 3 \N \N \N f 3 215 +2524 1 2 \N \N \N f 3 246 +2525 3 3 \N \N \N f 3 236 +2526 3 2 \N \N \N f 3 267 +2527 2 3 \N \N \N f 3 203 +2528 2 2 \N \N \N f 3 234 +2529 2 1 \N \N \N f 3 265 +2530 2 1 \N \N \N f 3 229 +2531 2 2 \N \N \N f 3 198 +2532 3 2 \N \N \N f 3 204 +2533 3 1 \N \N \N f 3 235 +2534 1 3 \N \N \N f 3 271 +2535 2 3 \N \N \N f 3 286 +2536 1 3 \N \N \N f 3 234 +2537 1 2 \N \N \N f 3 265 +2538 3 3 \N \N \N f 3 263 +2539 3 3 \N \N \N f 3 213 +2540 3 2 \N \N \N f 3 244 +2541 3 1 \N \N \N f 3 275 +2542 3 1 \N \N \N f 3 220 +2543 2 1 \N \N \N f 3 210 +2544 3 2 \N \N \N f 3 206 +2545 3 1 \N \N \N f 3 237 +2546 3 3 \N \N \N f 3 286 +2547 3 1 \N \N \N f 3 223 +2548 3 3 \N \N \N f 3 288 +2549 3 1 \N \N \N f 3 229 +2550 3 2 \N \N \N f 3 198 +2551 3 1 \N \N \N f 3 221 +2552 2 1 \N \N \N f 3 285 +2553 2 3 \N \N \N f 3 223 +2554 2 2 \N \N \N f 3 254 +2555 3 3 \N \N \N f 3 284 +2556 2 3 \N \N \N f 3 277 +2557 2 1 \N \N \N f 3 280 +2558 2 3 \N \N \N f 3 218 +2559 2 2 \N \N \N f 3 249 +2560 3 3 \N \N \N f 3 205 +2561 3 2 \N \N \N f 3 236 +2562 3 1 \N \N \N f 3 267 +2563 2 2 \N \N \N f 3 221 +2564 2 1 \N \N \N f 3 252 +2565 3 2 \N \N \N f 3 202 +2566 3 1 \N \N \N f 3 233 +2567 1 2 \N \N \N f 3 231 +2568 1 3 \N \N \N f 3 200 +2569 1 1 \N \N \N t 3 262 +2570 1 1 \N \N \N t 3 280 +2571 1 3 \N \N \N f 3 218 +2572 1 2 \N \N \N f 3 249 +2573 1 3 \N \N \N f 3 286 +2574 1 3 \N \N \N f 3 273 +2575 1 1 \N \N \N t 3 239 +2576 1 2 \N \N \N f 3 208 +2577 1 2 \N \N \N f 3 283 +2578 1 3 \N \N \N f 3 252 +2579 1 3 \N \N \N f 3 287 +2580 2 3 \N \N \N f 3 202 +2581 2 2 \N \N \N f 3 233 +2582 2 1 \N \N \N f 3 264 +2583 1 1 \N \N \N t 3 204 +2584 2 2 \N \N \N f 3 215 +2585 2 1 \N \N \N f 3 246 +2586 3 1 \N \N \N f 3 217 +2587 3 1 \N \N \N f 3 214 +2588 2 3 \N \N \N f 3 270 +2589 1 1 \N \N \N t 3 225 +2590 1 2 \N \N \N f 3 194 +2591 1 1 \N \N \N t 3 219 +2592 2 3 \N \N \N f 3 273 +3457 2 1 \N \N \N f 5 124 +3458 2 2 \N \N \N f 5 189 +3459 2 3 \N \N \N f 5 158 +3460 3 2 \N \N \N f 5 185 +3461 2 2 \N \N \N f 5 182 +3462 3 3 \N \N \N f 5 154 +3463 2 3 \N \N \N f 5 151 +3464 2 3 \N \N \N f 5 170 +3465 3 2 \N \N \N f 5 106 +3466 3 1 \N \N \N f 5 137 +3467 2 2 \N \N \N f 5 120 +3468 2 1 \N \N \N f 5 151 +3469 3 1 \N \N \N f 5 109 +3470 1 1 \N \N \N t 5 104 +3471 3 3 \N \N \N f 5 129 +3472 1 3 \N \N \N f 5 139 +3473 3 2 \N \N \N f 5 160 +3474 1 2 \N \N \N f 5 170 +3475 3 1 \N \N \N f 5 191 +3476 1 3 \N \N \N f 5 114 +3477 1 2 \N \N \N f 5 145 +3478 1 1 \N \N \N t 5 176 +3479 3 1 \N \N \N f 5 184 +3480 3 3 \N \N \N f 5 122 +3481 3 2 \N \N \N f 5 153 +3482 1 3 \N \N \N f 5 132 +3483 1 2 \N \N \N f 5 163 +3484 3 1 \N \N \N f 5 102 +3485 1 1 \N \N \N t 5 121 +3486 3 2 \N \N \N f 5 126 +3487 3 1 \N \N \N f 5 157 +3488 2 3 \N \N \N f 5 128 +3489 2 2 \N \N \N f 5 159 +3490 2 1 \N \N \N f 5 190 +3491 3 1 \N \N \N f 5 119 +3492 3 3 \N \N \N f 5 171 +3493 2 3 \N \N \N f 5 138 +3494 2 2 \N \N \N f 5 169 +3495 3 1 \N \N \N f 5 101 +3496 1 2 \N \N \N f 5 142 +3497 1 1 \N \N \N t 5 105 +3498 1 3 \N \N \N f 5 111 +3499 1 1 \N \N \N t 5 173 +3500 2 1 \N \N \N f 5 136 +3501 2 2 \N \N \N f 5 105 +3502 1 2 \N \N \N f 5 119 +3503 1 1 \N \N \N t 5 150 +3504 2 3 \N \N \N f 5 184 +3505 2 2 \N \N \N f 5 185 +3506 2 3 \N \N \N f 5 154 +3507 1 1 \N \N \N t 5 101 +3508 2 2 \N \N \N f 5 117 +3509 2 1 \N \N \N f 5 148 +3510 2 1 \N \N \N f 5 122 +3511 3 2 \N \N \N f 5 181 +3512 2 2 \N \N \N f 5 136 +3513 2 3 \N \N \N f 5 105 +3514 3 3 \N \N \N f 5 150 +3515 2 1 \N \N \N f 5 167 +3516 1 1 \N \N \N t 5 125 +3517 1 3 \N \N \N f 5 149 +3518 1 2 \N \N \N f 5 180 +3519 1 1 \N \N \N t 5 118 +3520 3 1 \N \N \N f 5 142 +3521 3 2 \N \N \N f 5 111 +3522 3 2 \N \N \N f 5 129 +3523 3 3 \N \N \N f 5 98 +3524 3 1 \N \N \N f 5 160 +3525 2 1 \N \N \N f 5 99 +3526 3 3 \N \N \N f 5 142 +3527 3 2 \N \N \N f 5 173 +3528 2 1 \N \N \N f 5 181 +3529 2 3 \N \N \N f 5 119 +3530 2 2 \N \N \N f 5 150 +3531 2 1 \N \N \N f 5 183 +3532 2 3 \N \N \N f 5 121 +3533 2 2 \N \N \N f 5 152 +3534 3 3 \N \N \N f 5 178 +3535 2 3 \N \N \N f 5 109 +3536 2 2 \N \N \N f 5 140 +3537 2 1 \N \N \N f 5 171 +3538 3 3 \N \N \N f 5 166 +3539 1 1 \N \N \N t 5 182 +3540 1 3 \N \N \N f 5 120 +3541 1 2 \N \N \N f 5 151 +3542 2 1 \N \N \N f 5 120 +3543 3 3 \N \N \N f 5 163 +3544 1 1 \N \N \N t 5 124 +3545 2 2 \N \N \N f 5 144 +3546 2 3 \N \N \N f 5 113 +3547 2 1 \N \N \N f 5 175 +3548 1 3 \N \N \N f 5 187 +3549 1 2 \N \N \N f 5 184 +3550 3 3 \N \N \N f 5 114 +3551 3 2 \N \N \N f 5 145 +3552 1 3 \N \N \N f 5 153 +3553 3 1 \N \N \N f 5 176 +3554 1 3 \N \N \N f 5 162 +3555 3 2 \N \N \N f 5 125 +3556 3 1 \N \N \N f 5 156 +3557 3 3 \N \N \N f 5 190 +3558 3 2 \N \N \N f 5 183 +3559 3 3 \N \N \N f 5 152 +3560 3 3 \N \N \N f 5 148 +3561 3 2 \N \N \N f 5 179 +3562 1 2 \N \N \N f 5 143 +3563 1 3 \N \N \N f 5 112 +3564 1 1 \N \N \N t 5 174 +3565 2 2 \N \N \N f 5 188 +3566 2 3 \N \N \N f 5 157 +3567 1 1 \N \N \N t 5 133 +3568 1 2 \N \N \N f 5 102 +3569 1 2 \N \N \N f 5 133 +3570 1 3 \N \N \N f 5 102 +3571 1 1 \N \N \N t 5 164 +3572 2 3 \N \N \N f 5 137 +3573 2 2 \N \N \N f 5 168 +3574 2 3 \N \N \N f 5 134 +3575 2 2 \N \N \N f 5 165 +3576 3 1 \N \N \N f 5 187 +3577 3 3 \N \N \N f 5 125 +3578 3 2 \N \N \N f 5 156 +3579 2 1 \N \N \N f 5 143 +3580 2 2 \N \N \N f 5 112 +3581 2 1 \N \N \N f 5 134 +3582 2 2 \N \N \N f 5 103 +3583 2 2 \N \N \N f 5 110 +3584 2 1 \N \N \N f 5 141 +3585 3 1 \N \N \N f 5 136 +3586 3 2 \N \N \N f 5 105 +3587 2 3 \N \N \N f 5 168 +3588 1 2 \N \N \N f 5 107 +3589 1 1 \N \N \N t 5 138 +3590 3 1 \N \N \N f 5 144 +3591 3 2 \N \N \N f 5 113 +3592 1 2 \N \N \N f 5 126 +3593 1 1 \N \N \N t 5 157 +3594 3 2 \N \N \N f 5 132 +3595 3 3 \N \N \N f 5 101 +3596 3 1 \N \N \N f 5 163 +3597 1 1 \N \N \N t 5 134 +3598 1 2 \N \N \N f 5 103 +3599 3 1 \N \N \N f 5 189 +3600 3 3 \N \N \N f 5 127 +3601 3 2 \N \N \N f 5 158 +3602 1 3 \N \N \N f 5 181 +3603 2 1 \N \N \N f 5 107 +3604 3 1 \N \N \N f 5 132 +3605 3 2 \N \N \N f 5 101 +3606 2 1 \N \N \N f 5 104 +3607 3 2 \N \N \N f 5 130 +3608 3 3 \N \N \N f 5 99 +3609 3 1 \N \N \N f 5 161 +3610 3 2 \N \N \N f 5 120 +3611 3 1 \N \N \N f 5 151 +3612 2 3 \N \N \N f 5 189 +3613 2 3 \N \N \N f 5 191 +3614 2 2 \N \N \N f 5 126 +3615 2 1 \N \N \N f 5 157 +3616 1 3 \N \N \N f 5 169 +3617 2 3 \N \N \N f 5 187 +3618 1 3 \N \N \N f 5 129 +3619 1 2 \N \N \N f 5 160 +3620 1 1 \N \N \N t 5 191 +3621 3 1 \N \N \N f 5 104 +3622 2 3 \N \N \N f 5 133 +3623 2 2 \N \N \N f 5 164 +3624 1 3 \N \N \N f 5 143 +3625 1 2 \N \N \N f 5 174 +3626 3 3 \N \N \N f 5 186 +3627 1 1 \N \N \N t 5 97 +3628 1 3 \N \N \N f 5 166 +3629 1 1 \N \N \N t 5 136 +3630 1 2 \N \N \N f 5 105 +3631 1 2 \N \N \N f 5 135 +3632 1 3 \N \N \N f 5 104 +3633 1 1 \N \N \N t 5 166 +3634 1 3 \N \N \N f 5 185 +3635 2 3 \N \N \N f 5 163 +3636 1 3 \N \N \N f 5 183 +3637 3 2 \N \N \N f 5 188 +3638 3 3 \N \N \N f 5 157 +3639 2 2 \N \N \N f 5 184 +3640 2 3 \N \N \N f 5 153 +3641 1 3 \N \N \N f 5 178 +3642 2 1 \N \N \N f 5 128 +3643 2 2 \N \N \N f 5 97 +3644 2 3 \N \N \N f 5 107 +3645 1 1 \N \N \N t 5 120 +3646 2 2 \N \N \N f 5 138 +3647 2 1 \N \N \N f 5 169 +3648 2 1 \N \N \N f 5 116 +3649 3 3 \N \N \N f 5 173 +3650 3 1 \N \N \N f 5 116 +3651 3 3 \N \N \N f 5 115 +3652 3 2 \N \N \N f 5 146 +3653 3 1 \N \N \N f 5 177 +3654 3 1 \N \N \N f 5 181 +3655 3 3 \N \N \N f 5 119 +3656 3 2 \N \N \N f 5 150 +3657 3 1 \N \N \N f 5 113 +3658 3 3 \N \N \N f 5 134 +3659 3 2 \N \N \N f 5 165 +3660 1 3 \N \N \N f 5 116 +3661 1 2 \N \N \N f 5 147 +3662 1 1 \N \N \N t 5 178 +3663 2 3 \N \N \N f 5 181 +3664 2 1 \N \N \N f 5 108 +3665 3 3 \N \N \N f 5 118 +3666 3 2 \N \N \N f 5 149 +3667 3 1 \N \N \N f 5 180 +3668 1 3 \N \N \N f 5 108 +3669 2 3 \N \N \N f 5 114 +3670 1 2 \N \N \N f 5 139 +3671 2 2 \N \N \N f 5 145 +3672 1 1 \N \N \N t 5 170 +3673 2 1 \N \N \N f 5 176 +3674 1 2 \N \N \N f 5 188 +3675 1 3 \N \N \N f 5 157 +3676 3 3 \N \N \N f 5 180 +3677 3 1 \N \N \N f 5 128 +3678 2 1 \N \N \N f 5 125 +3679 3 2 \N \N \N f 5 97 +3680 3 1 \N \N \N f 5 110 +3681 2 3 \N \N \N f 5 110 +3682 2 2 \N \N \N f 5 141 +3683 2 1 \N \N \N f 5 172 +3684 1 1 \N \N \N t 5 132 +3685 1 2 \N \N \N f 5 101 +3686 3 3 \N \N \N f 5 139 +3687 2 3 \N \N \N f 5 146 +3688 3 2 \N \N \N f 5 170 +3689 2 2 \N \N \N f 5 177 +3690 2 1 \N \N \N f 5 111 +3691 2 2 \N \N \N f 5 131 +3692 2 3 \N \N \N f 5 100 +3693 2 1 \N \N \N f 5 162 +3694 2 3 \N \N \N f 5 165 +3695 1 2 \N \N \N f 5 108 +3696 1 1 \N \N \N t 5 139 +3697 2 3 \N \N \N f 5 173 +3698 2 3 \N \N \N f 5 175 +3699 1 3 \N \N \N f 5 131 +3700 1 2 \N \N \N f 5 162 +3701 3 1 \N \N \N f 5 106 +3702 1 2 \N \N \N f 5 182 +3703 1 3 \N \N \N f 5 151 +3704 1 1 \N \N \N t 5 130 +3705 1 2 \N \N \N f 5 99 +3706 3 3 \N \N \N f 5 177 +3707 2 1 \N \N \N f 5 135 +3708 2 2 \N \N \N f 5 104 +3709 3 3 \N \N \N f 5 131 +3710 3 2 \N \N \N f 5 162 +3711 3 3 \N \N \N f 5 143 +3712 3 2 \N \N \N f 5 174 +3713 3 3 \N \N \N f 5 133 +3714 3 2 \N \N \N f 5 164 +3715 1 1 \N \N \N t 5 115 +3716 2 3 \N \N \N f 5 185 +3717 1 1 \N \N \N t 5 113 +3718 1 3 \N \N \N f 5 174 +3719 1 3 \N \N \N f 5 115 +3720 1 2 \N \N \N f 5 146 +3721 1 1 \N \N \N t 5 177 +3722 1 3 \N \N \N f 5 135 +3723 1 2 \N \N \N f 5 166 +3724 3 2 \N \N \N f 5 109 +3725 3 1 \N \N \N f 5 140 +3726 2 3 \N \N \N f 5 116 +3727 2 2 \N \N \N f 5 147 +3728 2 1 \N \N \N f 5 178 +3729 1 1 \N \N \N t 5 183 +3730 1 3 \N \N \N f 5 121 +3731 1 2 \N \N \N f 5 152 +3732 1 1 \N \N \N t 5 185 +3733 1 3 \N \N \N f 5 123 +3734 1 2 \N \N \N f 5 154 +3735 1 2 \N \N \N f 5 114 +3736 1 1 \N \N \N t 5 145 +3737 3 2 \N \N \N f 5 116 +3738 3 1 \N \N \N f 5 147 +3739 3 3 \N \N \N f 5 147 +3740 3 2 \N \N \N f 5 178 +3741 1 2 \N \N \N f 5 106 +3742 1 1 \N \N \N t 5 137 +3743 1 1 \N \N \N t 5 122 +3744 2 2 \N \N \N f 5 135 +3745 2 3 \N \N \N f 5 104 +3746 2 1 \N \N \N f 5 166 +3747 1 3 \N \N \N f 5 107 +3748 1 2 \N \N \N f 5 138 +3749 1 1 \N \N \N t 5 169 +3750 3 1 \N \N \N f 5 126 +3751 3 3 \N \N \N f 5 189 +3752 3 1 \N \N \N f 5 186 +3753 3 3 \N \N \N f 5 124 +3754 3 2 \N \N \N f 5 155 +3755 1 3 \N \N \N f 5 145 +3756 1 2 \N \N \N f 5 176 +3757 2 1 \N \N \N f 5 185 +3758 2 3 \N \N \N f 5 123 +3759 2 2 \N \N \N f 5 154 +3760 1 3 \N \N \N f 5 170 +3761 2 1 \N \N \N f 5 192 +3762 2 3 \N \N \N f 5 130 +3763 2 2 \N \N \N f 5 161 +3764 3 3 \N \N \N f 5 106 +3765 3 2 \N \N \N f 5 137 +3766 3 1 \N \N \N f 5 168 +3767 2 2 \N \N \N f 5 106 +3768 2 1 \N \N \N f 5 137 +3769 1 1 \N \N \N t 5 129 +3770 1 2 \N \N \N f 5 98 +3771 2 2 \N \N \N f 5 129 +3772 2 3 \N \N \N f 5 98 +3773 2 1 \N \N \N f 5 160 +3774 2 2 \N \N \N f 5 133 +3775 2 3 \N \N \N f 5 102 +3776 3 2 \N \N \N f 5 118 +3777 3 1 \N \N \N f 5 149 +3778 2 1 \N \N \N f 5 164 +3779 3 1 \N \N \N f 5 131 +3780 3 2 \N \N \N f 5 100 +3781 3 3 \N \N \N f 5 182 +3782 1 1 \N \N \N t 5 109 +3783 1 2 \N \N \N f 5 185 +3784 1 3 \N \N \N f 5 154 +3785 1 2 \N \N \N f 5 134 +3786 1 3 \N \N \N f 5 103 +3787 1 1 \N \N \N t 5 165 +3788 2 3 \N \N \N f 5 192 +3789 1 3 \N \N \N f 5 140 +3790 1 2 \N \N \N f 5 171 +3791 2 3 \N \N \N f 5 179 +3792 1 3 \N \N \N f 5 168 +3793 2 3 \N \N \N f 5 144 +3794 2 2 \N \N \N f 5 175 +3795 2 1 \N \N \N f 5 97 +3796 3 2 \N \N \N f 5 114 +3797 3 1 \N \N \N f 5 145 +3798 2 2 \N \N \N f 5 115 +3799 2 1 \N \N \N f 5 146 +3800 1 1 \N \N \N t 5 189 +3801 1 3 \N \N \N f 5 127 +3802 1 2 \N \N \N f 5 158 +3803 3 3 \N \N \N f 5 183 +3804 2 2 \N \N \N f 5 121 +3805 2 1 \N \N \N f 5 152 +3806 2 2 \N \N \N f 5 124 +3807 2 1 \N \N \N f 5 155 +3808 2 3 \N \N \N f 5 148 +3809 2 2 \N \N \N f 5 179 +3810 3 3 \N \N \N f 5 187 +3811 1 1 \N \N \N t 5 106 +3812 2 3 \N \N \N f 5 118 +3813 2 2 \N \N \N f 5 149 +3814 2 1 \N \N \N f 5 180 +3815 2 1 \N \N \N f 5 123 +3816 1 1 \N \N \N t 5 126 +3817 2 1 \N \N \N f 5 118 +3818 1 3 \N \N \N f 5 106 +3819 1 2 \N \N \N f 5 137 +3820 1 1 \N \N \N t 5 168 +3821 3 1 \N \N \N f 5 124 +3822 1 3 \N \N \N f 5 180 +3823 3 3 \N \N \N f 5 138 +3824 3 2 \N \N \N f 5 169 +3825 1 3 \N \N \N f 5 142 +3826 1 2 \N \N \N f 5 173 +3827 3 2 \N \N \N f 5 121 +3828 3 1 \N \N \N f 5 152 +3829 2 3 \N \N \N f 5 142 +3830 3 3 \N \N \N f 5 145 +3831 2 2 \N \N \N f 5 173 +3832 3 2 \N \N \N f 5 176 +3833 1 2 \N \N \N f 5 122 +3834 1 1 \N \N \N t 5 153 +3835 3 1 \N \N \N f 5 117 +3836 1 2 \N \N \N f 5 118 +3837 1 1 \N \N \N t 5 149 +3838 3 3 \N \N \N f 5 191 +3839 1 3 \N \N \N f 5 186 +3840 1 1 \N \N \N t 5 181 +3841 3 1 \N \N \N f 5 143 +3842 1 3 \N \N \N f 5 119 +3843 3 2 \N \N \N f 5 112 +3844 1 2 \N \N \N f 5 150 +3845 3 3 \N \N \N f 5 110 +3846 3 2 \N \N \N f 5 141 +3847 3 1 \N \N \N f 5 172 +3848 2 1 \N \N \N f 5 127 +3849 1 2 \N \N \N f 5 131 +3850 1 3 \N \N \N f 5 100 +3851 1 1 \N \N \N t 5 162 +3852 2 3 \N \N \N f 5 162 +3853 1 2 \N \N \N f 5 110 +3854 1 1 \N \N \N t 5 141 +3855 2 1 \N \N \N f 5 187 +3856 2 3 \N \N \N f 5 125 +3857 2 2 \N \N \N f 5 156 +3858 1 3 \N \N \N f 5 182 +3859 3 2 \N \N \N f 5 135 +3860 3 3 \N \N \N f 5 104 +3861 3 1 \N \N \N f 5 166 +3862 3 1 \N \N \N f 5 97 +3863 3 2 \N \N \N f 5 144 +3864 3 3 \N \N \N f 5 113 +3865 3 1 \N \N \N f 5 175 +3866 1 3 \N \N \N f 5 177 +3867 3 3 \N \N \N f 5 168 +3868 3 3 \N \N \N f 5 108 +3869 3 2 \N \N \N f 5 139 +3870 3 1 \N \N \N f 5 170 +3871 3 3 \N \N \N f 5 175 +3872 2 1 \N \N \N f 5 132 +3873 2 2 \N \N \N f 5 101 +3874 2 3 \N \N \N f 5 180 +3875 2 1 \N \N \N f 5 189 +3876 2 3 \N \N \N f 5 127 +3877 2 2 \N \N \N f 5 158 +3878 3 3 \N \N \N f 5 159 +3879 3 2 \N \N \N f 5 190 +3880 2 1 \N \N \N f 5 131 +3881 2 2 \N \N \N f 5 100 +3882 2 2 \N \N \N f 5 108 +3883 2 1 \N \N \N f 5 139 +3884 3 3 \N \N \N f 5 162 +3885 1 3 \N \N \N f 5 189 +3886 2 3 \N \N \N f 5 176 +3887 2 3 \N \N \N f 5 139 +3888 2 2 \N \N \N f 5 170 +3889 3 3 \N \N \N f 5 185 +3890 3 1 \N \N \N f 5 111 +3891 1 3 \N \N \N f 5 163 +3892 3 1 \N \N \N f 5 188 +3893 3 3 \N \N \N f 5 126 +3894 3 2 \N \N \N f 5 157 +3895 1 2 \N \N \N f 5 192 +3896 2 1 \N \N \N f 5 112 +3897 1 3 \N \N \N f 5 161 +3898 3 1 \N \N \N f 5 99 +3899 2 3 \N \N \N f 5 174 +3900 2 3 \N \N \N f 5 167 +3901 3 2 \N \N \N f 5 182 +3902 3 3 \N \N \N f 5 151 +3903 3 1 \N \N \N f 5 103 +3904 1 1 \N \N \N t 5 102 +3905 2 2 \N \N \N f 5 127 +3906 2 1 \N \N \N f 5 158 +3907 1 3 \N \N \N f 5 133 +3908 1 2 \N \N \N f 5 164 +3909 2 3 \N \N \N f 5 136 +3910 2 2 \N \N \N f 5 167 +3911 1 1 \N \N \N t 5 103 +3912 2 2 \N \N \N f 5 142 +3913 2 1 \N \N \N f 5 98 +3914 2 3 \N \N \N f 5 111 +3915 1 3 \N \N \N f 5 171 +3916 2 1 \N \N \N f 5 173 +3917 3 3 \N \N \N f 5 188 +3918 2 1 \N \N \N f 5 106 +3919 2 1 \N \N \N f 5 119 +3920 3 1 \N \N \N f 5 120 +3921 3 1 \N \N \N f 5 192 +3922 1 2 \N \N \N f 5 125 +3923 3 3 \N \N \N f 5 130 +3924 1 1 \N \N \N t 5 156 +3925 3 2 \N \N \N f 5 161 +3926 3 2 \N \N \N f 5 123 +3927 3 1 \N \N \N f 5 154 +3928 1 3 \N \N \N f 5 175 +3929 2 1 \N \N \N f 5 121 +3930 2 3 \N \N \N f 5 188 +3931 2 2 \N \N \N f 5 130 +3932 2 3 \N \N \N f 5 99 +3933 2 1 \N \N \N f 5 161 +3934 2 3 \N \N \N f 5 183 +3935 1 3 \N \N \N f 5 159 +3936 1 2 \N \N \N f 5 190 +3937 2 2 \N \N \N f 5 191 +3938 2 3 \N \N \N f 5 160 +3939 3 3 \N \N \N f 5 132 +3940 3 2 \N \N \N f 5 163 +3941 2 3 \N \N \N f 5 115 +3942 2 2 \N \N \N f 5 146 +3943 2 1 \N \N \N f 5 177 +3944 1 2 \N \N \N f 5 187 +3945 1 3 \N \N \N f 5 156 +3946 2 2 \N \N \N f 5 143 +3947 2 3 \N \N \N f 5 112 +3948 2 1 \N \N \N f 5 174 +3949 2 1 \N \N \N f 5 126 +3950 1 1 \N \N \N t 5 123 +3951 3 2 \N \N \N f 5 110 +3952 3 1 \N \N \N f 5 141 +3953 1 3 \N \N \N f 5 179 +3954 3 2 \N \N \N f 5 108 +3955 1 1 \N \N \N t 5 99 +3956 3 1 \N \N \N f 5 139 +3957 3 3 \N \N \N f 5 117 +3958 3 2 \N \N \N f 5 148 +3959 3 1 \N \N \N f 5 179 +3960 3 3 \N \N \N f 5 128 +3961 3 2 \N \N \N f 5 159 +3962 3 1 \N \N \N f 5 190 +3963 2 3 \N \N \N f 5 186 +3964 3 3 \N \N \N f 5 135 +3965 3 2 \N \N \N f 5 166 +3966 3 3 \N \N \N f 5 144 +3967 3 2 \N \N \N f 5 175 +3968 1 1 \N \N \N t 5 98 +3969 1 1 \N \N \N t 5 111 +3970 2 3 \N \N \N f 5 131 +3971 3 3 \N \N \N f 5 116 +3972 3 2 \N \N \N f 5 147 +3973 2 2 \N \N \N f 5 162 +3974 3 1 \N \N \N f 5 178 +3975 3 1 \N \N \N f 5 115 +3976 1 3 \N \N \N f 5 110 +3977 1 2 \N \N \N f 5 141 +3978 1 1 \N \N \N t 5 172 +3979 3 1 \N \N \N f 5 129 +3980 3 2 \N \N \N f 5 98 +3981 1 1 \N \N \N t 5 186 +3982 1 3 \N \N \N f 5 124 +3983 1 2 \N \N \N f 5 155 +3984 2 1 \N \N \N f 5 129 +3985 2 2 \N \N \N f 5 98 +3986 2 3 \N \N \N f 5 106 +3987 1 1 \N \N \N t 5 119 +3988 2 2 \N \N \N f 5 137 +3989 2 1 \N \N \N f 5 168 +3990 1 3 \N \N \N f 5 136 +3991 1 2 \N \N \N f 5 167 +3992 1 3 \N \N \N f 5 117 +3993 1 2 \N \N \N f 5 148 +3994 1 1 \N \N \N t 5 179 +3995 3 2 \N \N \N f 5 187 +3996 3 3 \N \N \N f 5 156 +3997 3 1 \N \N \N f 5 105 +3998 1 2 \N \N \N f 5 117 +3999 1 1 \N \N \N t 5 148 +4000 1 1 \N \N \N t 5 127 +4001 3 3 \N \N \N f 5 179 +4002 1 2 \N \N \N f 5 120 +4003 1 1 \N \N \N t 5 151 +4004 3 3 \N \N \N f 5 176 +4005 3 3 \N \N \N f 5 192 +4006 2 1 \N \N \N f 5 100 +4007 1 2 \N \N \N f 5 129 +4008 1 3 \N \N \N f 5 98 +4009 1 1 \N \N \N t 5 160 +4010 1 3 \N \N \N f 5 165 +4011 2 3 \N \N \N f 5 171 +4012 3 2 \N \N \N f 5 127 +4013 3 1 \N \N \N f 5 158 +4014 1 1 \N \N \N t 5 188 +4015 1 3 \N \N \N f 5 126 +4016 1 2 \N \N \N f 5 157 +4017 2 1 \N \N \N f 5 102 +4018 1 3 \N \N \N f 5 191 +4019 3 2 \N \N \N f 5 107 +4020 3 1 \N \N \N f 5 138 +4021 3 2 \N \N \N f 5 189 +4022 3 3 \N \N \N f 5 158 +4023 1 2 \N \N \N f 5 181 +4024 1 3 \N \N \N f 5 150 +4025 3 1 \N \N \N f 5 134 +4026 3 2 \N \N \N f 5 103 +4027 1 2 \N \N \N f 5 121 +4028 1 1 \N \N \N t 5 152 +4029 3 2 \N \N \N f 5 128 +4030 3 3 \N \N \N f 5 97 +4031 3 1 \N \N \N f 5 159 +4032 2 1 \N \N \N f 5 142 +4033 2 2 \N \N \N f 5 111 +4034 1 1 \N \N \N t 5 135 +4035 1 2 \N \N \N f 5 104 +4036 1 1 \N \N \N t 5 144 +4037 1 2 \N \N \N f 5 113 +4038 2 3 \N \N \N f 5 129 +4039 2 2 \N \N \N f 5 160 +4040 2 1 \N \N \N f 5 191 +4041 1 3 \N \N \N f 5 138 +4042 1 2 \N \N \N f 5 169 +4043 3 2 \N \N \N f 5 133 +4044 3 3 \N \N \N f 5 102 +4045 3 1 \N \N \N f 5 164 +4046 3 2 \N \N \N f 5 124 +4047 3 1 \N \N \N f 5 155 +4048 1 2 \N \N \N f 5 123 +4049 1 1 \N \N \N t 5 154 +4050 2 3 \N \N \N f 5 143 +4051 2 3 \N \N \N f 5 141 +4052 2 2 \N \N \N f 5 172 +4053 2 2 \N \N \N f 5 174 +4054 3 3 \N \N \N f 5 164 +4055 1 3 \N \N \N f 5 144 +4056 1 2 \N \N \N f 5 175 +4057 2 1 \N \N \N f 5 144 +4058 2 2 \N \N \N f 5 113 +4059 1 2 \N \N \N f 5 127 +4060 1 1 \N \N \N t 5 158 +4061 3 3 \N \N \N f 5 170 +4062 3 1 \N \N \N f 5 135 +4063 3 2 \N \N \N f 5 104 +4064 2 3 \N \N \N f 5 135 +4065 2 2 \N \N \N f 5 166 +4066 1 3 \N \N \N f 5 147 +4067 1 2 \N \N \N f 5 178 +4068 1 3 \N \N \N f 5 184 +4069 1 1 \N \N \N t 5 192 +4070 1 3 \N \N \N f 5 130 +4071 1 2 \N \N \N f 5 161 +4072 3 1 \N \N \N f 5 114 +4073 3 1 \N \N \N f 5 108 +4074 2 2 \N \N \N f 5 119 +4075 2 1 \N \N \N f 5 150 +4076 2 3 \N \N \N f 5 159 +4077 2 2 \N \N \N f 5 190 +4078 3 3 \N \N \N f 5 149 +4079 3 2 \N \N \N f 5 180 +4080 2 3 \N \N \N f 5 169 +4081 3 1 \N \N \N f 5 122 +4082 2 2 \N \N \N f 5 181 +4083 2 3 \N \N \N f 5 150 +4084 3 3 \N \N \N f 5 172 +4085 1 1 \N \N \N t 5 117 +4086 2 3 \N \N \N f 5 190 +4087 3 2 \N \N \N f 5 142 +4088 3 3 \N \N \N f 5 111 +4089 3 1 \N \N \N f 5 173 +4090 2 1 \N \N \N f 5 114 +4091 2 2 \N \N \N f 5 186 +4092 2 3 \N \N \N f 5 155 +4093 2 2 \N \N \N f 5 125 +4094 2 1 \N \N \N f 5 156 +4095 2 2 \N \N \N f 5 107 +4096 2 1 \N \N \N f 5 138 +4097 2 2 \N \N \N f 5 128 +4098 2 3 \N \N \N f 5 97 +4099 2 1 \N \N \N f 5 159 +4100 2 2 \N \N \N f 5 187 +4101 2 3 \N \N \N f 5 156 +4102 1 1 \N \N \N t 5 142 +4103 1 2 \N \N \N f 5 111 +4104 3 1 \N \N \N f 5 112 +4105 1 3 \N \N \N f 5 160 +4106 1 2 \N \N \N f 5 191 +4107 1 2 \N \N \N f 5 136 +4108 1 3 \N \N \N f 5 105 +4109 1 1 \N \N \N t 5 167 +4110 3 2 \N \N \N f 5 134 +4111 3 3 \N \N \N f 5 103 +4112 1 3 \N \N \N f 5 164 +4113 3 1 \N \N \N f 5 165 +4114 1 1 \N \N \N t 5 108 +4115 3 1 \N \N \N f 5 183 +4116 3 3 \N \N \N f 5 121 +4117 3 2 \N \N \N f 5 152 +4118 1 3 \N \N \N f 5 172 +4119 2 3 \N \N \N f 5 147 +4120 2 2 \N \N \N f 5 178 +4121 1 1 \N \N \N t 5 112 +4122 3 3 \N \N \N f 5 146 +4123 3 2 \N \N \N f 5 177 +4124 2 1 \N \N \N f 5 186 +4125 2 3 \N \N \N f 5 124 +4126 2 2 \N \N \N f 5 155 +4127 1 3 \N \N \N f 5 128 +4128 1 2 \N \N \N f 5 159 +4129 1 1 \N \N \N t 5 190 +4130 3 3 \N \N \N f 5 137 +4131 3 2 \N \N \N f 5 168 +4132 2 3 \N \N \N f 5 178 +4133 2 3 \N \N \N f 5 172 +4134 1 3 \N \N \N f 5 148 +4135 1 2 \N \N \N f 5 179 +4136 1 3 \N \N \N f 5 167 +4137 1 2 \N \N \N f 5 128 +4138 1 3 \N \N \N f 5 97 +4139 1 1 \N \N \N t 5 159 +4140 3 2 \N \N \N f 5 191 +4141 3 3 \N \N \N f 5 160 +4142 2 1 \N \N \N f 5 117 +4143 3 3 \N \N \N f 5 109 +4144 3 2 \N \N \N f 5 140 +4145 3 1 \N \N \N f 5 171 +4146 3 3 \N \N \N f 5 174 +4147 2 3 \N \N \N f 5 117 +4148 2 2 \N \N \N f 5 148 +4149 2 1 \N \N \N f 5 179 +4150 2 1 \N \N \N f 5 182 +4151 2 3 \N \N \N f 5 120 +4152 2 1 \N \N \N f 5 110 +4153 2 2 \N \N \N f 5 151 +4154 3 2 \N \N \N f 5 136 +4155 3 3 \N \N \N f 5 105 +4156 3 1 \N \N \N f 5 167 +4157 3 2 \N \N \N f 5 143 +4158 3 3 \N \N \N f 5 112 +4159 3 1 \N \N \N f 5 174 +4160 3 1 \N \N \N f 5 100 +4161 3 1 \N \N \N f 5 98 +4162 2 2 \N \N \N f 5 123 +4163 2 1 \N \N \N f 5 154 +4164 3 3 \N \N \N f 5 140 +4165 3 2 \N \N \N f 5 171 +4166 2 3 \N \N \N f 5 140 +4167 2 2 \N \N \N f 5 171 +4168 2 3 \N \N \N f 5 177 +4169 1 3 \N \N \N f 5 190 +4170 2 1 \N \N \N f 5 109 +4171 3 3 \N \N \N f 5 141 +4172 3 2 \N \N \N f 5 172 +4173 3 2 \N \N \N f 5 184 +4174 3 3 \N \N \N f 5 153 +4175 2 2 \N \N \N f 5 116 +4176 2 1 \N \N \N f 5 147 +4177 2 2 \N \N \N f 5 109 +4178 2 1 \N \N \N f 5 140 +4179 1 1 \N \N \N t 5 116 +4180 1 3 \N \N \N f 5 173 +4181 2 3 \N \N \N f 5 149 +4182 2 2 \N \N \N f 5 180 +4183 1 1 \N \N \N t 5 187 +4184 1 3 \N \N \N f 5 125 +4185 1 2 \N \N \N f 5 156 +4186 2 1 \N \N \N f 5 184 +4187 2 3 \N \N \N f 5 122 +4188 2 2 \N \N \N f 5 153 +4189 3 1 \N \N \N f 5 118 +4190 3 3 \N \N \N f 5 167 +4191 1 2 \N \N \N f 5 183 +4192 1 3 \N \N \N f 5 152 +4193 1 3 \N \N \N f 5 109 +4194 1 2 \N \N \N f 5 140 +4195 1 1 \N \N \N t 5 171 +4196 1 1 \N \N \N t 5 184 +4197 1 3 \N \N \N f 5 122 +4198 1 2 \N \N \N f 5 153 +4199 2 2 \N \N \N f 5 132 +4200 2 3 \N \N \N f 5 101 +4201 2 1 \N \N \N f 5 163 +4202 3 1 \N \N \N f 5 130 +4203 3 2 \N \N \N f 5 99 +4204 1 1 \N \N \N t 5 110 +4205 1 1 \N \N \N t 5 114 +4206 2 1 \N \N \N f 5 188 +4207 2 3 \N \N \N f 5 126 +4208 2 2 \N \N \N f 5 157 +4209 1 2 \N \N \N f 5 144 +4210 1 3 \N \N \N f 5 113 +4211 1 1 \N \N \N t 5 175 +4212 2 1 \N \N \N f 5 101 +4213 1 1 \N \N \N t 5 100 +4214 3 2 \N \N \N f 5 186 +4215 3 3 \N \N \N f 5 155 +4216 1 2 \N \N \N f 5 130 +4217 1 3 \N \N \N f 5 99 +4218 1 1 \N \N \N t 5 161 +4219 1 2 \N \N \N f 5 132 +4220 1 3 \N \N \N f 5 101 +4221 1 1 \N \N \N t 5 163 +4222 2 2 \N \N \N f 5 118 +4223 2 1 \N \N \N f 5 149 +4224 3 2 \N \N \N f 5 131 +4225 3 3 \N \N \N f 5 100 +4226 3 1 \N \N \N f 5 162 +4227 3 2 \N \N \N f 5 122 +4228 3 1 \N \N \N f 5 153 +4229 1 2 \N \N \N f 5 109 +4230 1 1 \N \N \N t 5 140 +4231 2 1 \N \N \N f 5 105 +4232 2 2 \N \N \N f 5 122 +4233 1 2 \N \N \N f 5 115 +4234 1 1 \N \N \N t 5 146 +4235 2 1 \N \N \N f 5 153 +4236 2 1 \N \N \N f 5 103 +4237 2 3 \N \N \N f 5 132 +4238 2 2 \N \N \N f 5 163 +4239 3 1 \N \N \N f 5 107 +4240 2 3 \N \N \N f 5 145 +4241 2 2 \N \N \N f 5 176 +4242 1 3 \N \N \N f 5 176 +4243 1 2 \N \N \N f 5 186 +4244 1 3 \N \N \N f 5 155 +4245 3 2 \N \N \N f 5 119 +4246 3 1 \N \N \N f 5 150 +4247 2 1 \N \N \N f 5 115 +4248 3 3 \N \N \N f 5 184 +4249 1 3 \N \N \N f 5 137 +4250 1 2 \N \N \N f 5 168 +4251 3 3 \N \N \N f 5 181 +4252 1 3 \N \N \N f 5 146 +4253 1 2 \N \N \N f 5 177 +4254 3 1 \N \N \N f 5 133 +4255 3 2 \N \N \N f 5 102 +4256 2 3 \N \N \N f 5 182 +4257 3 3 \N \N \N f 5 169 +4258 3 3 \N \N \N f 5 136 +4259 3 2 \N \N \N f 5 167 +4260 2 2 \N \N \N f 5 134 +4261 2 3 \N \N \N f 5 103 +4262 2 1 \N \N \N f 5 165 +4263 2 3 \N \N \N f 5 164 +4264 1 1 \N \N \N t 5 143 +4265 1 2 \N \N \N f 5 112 +4266 3 2 \N \N \N f 5 117 +4267 3 1 \N \N \N f 5 148 +4268 1 3 \N \N \N f 5 118 +4269 1 2 \N \N \N f 5 149 +4270 1 1 \N \N \N t 5 180 +4271 3 1 \N \N \N f 5 121 +4272 1 2 \N \N \N f 5 116 +4273 1 1 \N \N \N t 5 147 +4274 2 1 \N \N \N f 5 113 +4275 2 3 \N \N \N f 5 166 +4276 1 3 \N \N \N f 5 188 +4277 3 1 \N \N \N f 5 185 +4278 3 3 \N \N \N f 5 123 +4279 3 2 \N \N \N f 5 154 +4280 2 3 \N \N \N f 5 108 +4281 2 2 \N \N \N f 5 139 +4282 2 1 \N \N \N f 5 170 +4283 1 3 \N \N \N f 5 192 +4284 3 3 \N \N \N f 5 165 +4285 2 1 \N \N \N f 5 130 +4286 2 2 \N \N \N f 5 99 +4287 2 2 \N \N \N f 5 183 +4288 2 3 \N \N \N f 5 152 +4289 2 2 \N \N \N f 5 192 +4290 2 3 \N \N \N f 5 161 +4291 2 2 \N \N \N f 5 114 +4292 2 1 \N \N \N f 5 145 +4293 2 1 \N \N \N f 5 133 +4294 2 2 \N \N \N f 5 102 +4295 1 1 \N \N \N t 5 107 +4296 1 3 \N \N \N f 5 141 +4297 1 2 \N \N \N f 5 172 +4298 3 3 \N \N \N f 5 107 +4299 3 2 \N \N \N f 5 138 +4300 3 1 \N \N \N f 5 169 +4301 3 1 \N \N \N f 5 127 +4302 3 2 \N \N \N f 5 192 +4303 3 1 \N \N \N f 5 123 +4304 3 3 \N \N \N f 5 161 +4305 3 1 \N \N \N f 5 182 +4306 1 3 \N \N \N f 5 134 +4307 3 3 \N \N \N f 5 120 +4308 3 2 \N \N \N f 5 151 +4309 1 2 \N \N \N f 5 165 +4310 1 2 \N \N \N f 5 124 +4311 1 1 \N \N \N t 5 155 +4312 3 2 \N \N \N f 5 115 +4313 3 1 \N \N \N f 5 146 +4314 1 1 \N \N \N t 5 128 +4315 1 2 \N \N \N f 5 97 +4316 1 2 \N \N \N f 5 189 +4317 3 1 \N \N \N f 5 125 +4318 1 3 \N \N \N f 5 158 +4319 1 1 \N \N \N t 5 131 +4320 1 2 \N \N \N f 5 100 +\. + + +-- +-- Data for Name: channels; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY channels (id, code, label, description, wavelength, red_cc, green_cc, blue_cc, ds_id, exp_id) FROM stdin; +4 DAPI DAPI \N \N 0 0 255 2 \N +5 GFP GFP \N \N 0 255 0 2 \N +6 CY5 Cy5 \N \N 255 0 0 2 \N +7 DAPI DAPI \N \N 0 0 255 3 \N +8 GFP GFP \N \N 0 255 0 3 \N +9 CY5 Cy5 \N \N 255 0 0 3 \N +11 OVERLAY-1 OVERLAY-1 \N \N 0 0 255 5 \N +\. + + +-- +-- Data for Name: containers; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY containers (id, perm_id, spots_width, spots_height, expe_id) FROM stdin; +1 20130412140147735-20 12 8 1 +2 20130412150557128-205 12 8 2 +\. + + +-- +-- Data for Name: database_version_logs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY database_version_logs (db_version, module_name, run_status, run_status_timestamp, module_code, run_exception) FROM stdin; +023 sql/imaging/postgresql/023/schema-023.sql SUCCESS 2013-04-11 15:40:16.64 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\N +\. + + +-- +-- Data for Name: events; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY events (last_seen_deletion_event_id) FROM stdin; +175 +\. + + +-- +-- Data for Name: experiments; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiments (id, perm_id, image_transformer_factory) FROM stdin; +1 20130412105232616-2 \N +2 20130412150049446-204 \N +\. + + +-- +-- Data for Name: feature_defs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY feature_defs (id, code, label, description, ds_id) FROM stdin; +9 ROW_NUMBER row number row number 3 +10 COLUMN_NUMBER column number column number 3 +11 TPU TPU TPU 3 +12 STATE STATE STATE 3 +\. + + +-- +-- Data for Name: feature_values; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY feature_values (id, z_in_m, t_in_sec, "values", fd_id) FROM stdin; +9 0 0 \\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 9 +10 0 0 \\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 10 +11 0 0 \\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 11 +12 0 0 \\x464c04020c0000000800000000000000000000000000803f0000803f0000803f0000803f0000803f0000803f0000803f0000000000000000000000000000803f0000803f0000803f0000803f0000803f000000000000803f0000803f000000000000803f00000000000000000000803f0000803f000000000000803f0000803f000000000000803f00000000000000000000803f000000000000803f0000803f00000000000000000000803f000000000000803f0000803f0000803f000000000000803f000000000000803f0000803f0000803f0000803f0000803f0000803f0000803f0000803f000000000000803f00000000000000000000803f000000000000803f0000803f0000803f000000000000000000000000000000000000000000000000000000000000803f00000000000000000000803f000000000000803f000000000000803f0000803f00000000000000000000803f00000000000000000000803f000000000000803f000000000000803f00000000000000000000803f000000000000803f0000803f 12 +\. + + +-- +-- Data for Name: feature_vocabulary_terms; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY feature_vocabulary_terms (id, code, sequence_number, fd_id) FROM stdin; +5 UNSTABLE 0 12 +6 STABLE 1 12 +\. + + +-- +-- Data for Name: image_data_sets; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_data_sets (id, perm_id, fields_width, fields_height, image_transformer_factory, is_multidimensional, image_library_name, image_library_reader_name, cont_id) FROM stdin; +2 20130412143121081-200 3 3 \N f \N \N 1 +3 20130412152038345-381 3 3 \N f \N \N 2 +5 20130412153119864-385 3 3 \N f \N \N 1 +\. + + +-- +-- Data for Name: image_transformations; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_transformations (id, code, label, description, image_transformer_factory, is_editable, is_default, channel_id) FROM stdin; +25 _CONVERT_1 Edge detection Transforms images with ImageMagic tool by calling: 'convert -edge 1 ...' \\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 f f 4 +26 _CONVERT_2 Radial Blur Transforms images with ImageMagic tool by calling: 'convert -radial-blur 30 ...' \\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 f f 4 +27 _CONVERT_3 Fuzzy Transforms images with ImageMagic tool by calling: 'convert -blur 3x.7 -solarize 50% -level 50%,0 ...' \\xaced00057372005b63682e73797374656d73782e636973642e6f70656e6269732e6473732e65746c2e64746f2e6170692e7472616e73666f726d6174696f6e732e436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727900000000000000010200024c000663686f6963657400684c63682f73797374656d73782f636973642f6f70656e6269732f6473732f65746c2f64746f2f6170692f7472616e73666f726d6174696f6e732f436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727924546f6f6c43686f6963653b4c0013636f6e76657274436c69417267756d656e74737400124c6a6176612f6c616e672f537472696e673b78707e72006663682e73797374656d73782e636973642e6f70656e6269732e6473732e65746c2e64746f2e6170692e7472616e73666f726d6174696f6e732e436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727924546f6f6c43686f69636500000000000000001200007872000e6a6176612e6c616e672e456e756d00000000000000001200007870740013454e464f5243455f494d4147454d414749434b7400252d626c75722033782e37202d736f6c6172697a6520353025202d6c6576656c203530252c30 f f 4 +28 _CONVERT_4 3D 1 Transforms images with ImageMagic tool by calling: 'convert -shade 0x45 ...' \\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 f f 4 +29 _CONVERT_5 3D 2 Transforms images with ImageMagic tool by calling: 'convert -shade 90x60 ...' \\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 f f 4 +30 _CONVERT_6 3D 3 Transforms images with ImageMagic tool by calling: 'convert -blur 0x3 -shade 120x45 -normalize ...' \\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 f f 4 +31 _CONVERT_7 Motion Blur Transforms images with ImageMagic tool by calling: 'convert -motion-blur 0x12+45 ...' \\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 f f 4 +32 _CONVERT_8 FFT Transforms images with ImageMagic tool by calling: 'convert -fft -delete 1 -auto-level -evaluate log 100000 ...' \\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 f f 4 +33 _CONVERT_1 Edge detection Transforms images with ImageMagic tool by calling: 'convert -edge 1 ...' \\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 f f 5 +34 _CONVERT_2 Radial Blur Transforms images with ImageMagic tool by calling: 'convert -radial-blur 30 ...' \\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 f f 5 +35 _CONVERT_3 Fuzzy Transforms images with ImageMagic tool by calling: 'convert -blur 3x.7 -solarize 50% -level 50%,0 ...' \\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 f f 5 +36 _CONVERT_4 3D 1 Transforms images with ImageMagic tool by calling: 'convert -shade 0x45 ...' \\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 f f 5 +37 _CONVERT_5 3D 2 Transforms images with ImageMagic tool by calling: 'convert -shade 90x60 ...' \\xaced00057372005b63682e73797374656d73782e636973642e6f70656e6269732e6473732e65746c2e64746f2e6170692e7472616e73666f726d6174696f6e732e436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727900000000000000010200024c000663686f6963657400684c63682f73797374656d73782f636973642f6f70656e6269732f6473732f65746c2f64746f2f6170692f7472616e73666f726d6174696f6e732f436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727924546f6f6c43686f6963653b4c0013636f6e76657274436c69417267756d656e74737400124c6a6176612f6c616e672f537472696e673b78707e72006663682e73797374656d73782e636973642e6f70656e6269732e6473732e65746c2e64746f2e6170692e7472616e73666f726d6174696f6e732e436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727924546f6f6c43686f69636500000000000000001200007872000e6a6176612e6c616e672e456e756d00000000000000001200007870740013454e464f5243455f494d4147454d414749434b74000c2d7368616465203930783630 f f 5 +38 _CONVERT_6 3D 3 Transforms images with ImageMagic tool by calling: 'convert -blur 0x3 -shade 120x45 -normalize ...' \\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 f f 5 +39 _CONVERT_7 Motion Blur Transforms images with ImageMagic tool by calling: 'convert -motion-blur 0x12+45 ...' \\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 f f 5 +40 _CONVERT_8 FFT Transforms images with ImageMagic tool by calling: 'convert -fft -delete 1 -auto-level -evaluate log 100000 ...' \\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 f f 5 +41 _CONVERT_1 Edge detection Transforms images with ImageMagic tool by calling: 'convert -edge 1 ...' \\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 f f 6 +42 _CONVERT_2 Radial Blur Transforms images with ImageMagic tool by calling: 'convert -radial-blur 30 ...' \\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 f f 6 +43 _CONVERT_3 Fuzzy Transforms images with ImageMagic tool by calling: 'convert -blur 3x.7 -solarize 50% -level 50%,0 ...' \\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 f f 6 +44 _CONVERT_4 3D 1 Transforms images with ImageMagic tool by calling: 'convert -shade 0x45 ...' \\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 f f 6 +45 _CONVERT_5 3D 2 Transforms images with ImageMagic tool by calling: 'convert -shade 90x60 ...' \\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 f f 6 +46 _CONVERT_6 3D 3 Transforms images with ImageMagic tool by calling: 'convert -blur 0x3 -shade 120x45 -normalize ...' \\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 f f 6 +47 _CONVERT_7 Motion Blur Transforms images with ImageMagic tool by calling: 'convert -motion-blur 0x12+45 ...' \\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 f f 6 +48 _CONVERT_8 FFT Transforms images with ImageMagic tool by calling: 'convert -fft -delete 1 -auto-level -evaluate log 100000 ...' \\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 f f 6 +49 _CONVERT_1 Edge detection Transforms images with ImageMagic tool by calling: 'convert -edge 1 ...' \\xaced00057372005b63682e73797374656d73782e636973642e6f70656e6269732e6473732e65746c2e64746f2e6170692e7472616e73666f726d6174696f6e732e436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727900000000000000010200024c000663686f6963657400684c63682f73797374656d73782f636973642f6f70656e6269732f6473732f65746c2f64746f2f6170692f7472616e73666f726d6174696f6e732f436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727924546f6f6c43686f6963653b4c0013636f6e76657274436c69417267756d656e74737400124c6a6176612f6c616e672f537472696e673b78707e72006663682e73797374656d73782e636973642e6f70656e6269732e6473732e65746c2e64746f2e6170692e7472616e73666f726d6174696f6e732e436f6e76657274546f6f6c496d6167655472616e73666f726d6572466163746f727924546f6f6c43686f69636500000000000000001200007872000e6a6176612e6c616e672e456e756d00000000000000001200007870740013454e464f5243455f494d4147454d414749434b7400072d656467652031 f f 7 +50 _CONVERT_2 Radial Blur Transforms images with ImageMagic tool by calling: 'convert -radial-blur 30 ...' \\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 f f 7 +51 _CONVERT_3 Fuzzy Transforms images with ImageMagic tool by calling: 'convert -blur 3x.7 -solarize 50% -level 50%,0 ...' \\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 f f 7 +52 _CONVERT_4 3D 1 Transforms images with ImageMagic tool by calling: 'convert -shade 0x45 ...' \\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 f f 7 +53 _CONVERT_5 3D 2 Transforms images with ImageMagic tool by calling: 'convert -shade 90x60 ...' \\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 f f 7 +54 _CONVERT_6 3D 3 Transforms images with ImageMagic tool by calling: 'convert -blur 0x3 -shade 120x45 -normalize ...' \\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 f f 7 +55 _CONVERT_7 Motion Blur Transforms images with ImageMagic tool by calling: 'convert -motion-blur 0x12+45 ...' \\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 f f 7 +56 _CONVERT_8 FFT Transforms images with ImageMagic tool by calling: 'convert -fft -delete 1 -auto-level -evaluate log 100000 ...' \\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 f f 7 +57 _CONVERT_1 Edge detection Transforms images with ImageMagic tool by calling: 'convert -edge 1 ...' \\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 f f 8 +58 _CONVERT_2 Radial Blur Transforms images with ImageMagic tool by calling: 'convert -radial-blur 30 ...' \\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 f f 8 +59 _CONVERT_3 Fuzzy Transforms images with ImageMagic tool by calling: 'convert -blur 3x.7 -solarize 50% -level 50%,0 ...' \\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 f f 8 +60 _CONVERT_4 3D 1 Transforms images with ImageMagic tool by calling: 'convert -shade 0x45 ...' \\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 f f 8 +61 _CONVERT_5 3D 2 Transforms images with ImageMagic tool by calling: 'convert -shade 90x60 ...' \\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 f f 8 +62 _CONVERT_6 3D 3 Transforms images with ImageMagic tool by calling: 'convert -blur 0x3 -shade 120x45 -normalize ...' \\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 f f 8 +63 _CONVERT_7 Motion Blur Transforms images with ImageMagic tool by calling: 'convert -motion-blur 0x12+45 ...' \\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 f f 8 +64 _CONVERT_8 FFT Transforms images with ImageMagic tool by calling: 'convert -fft -delete 1 -auto-level -evaluate log 100000 ...' \\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 f f 8 +65 _CONVERT_1 Edge detection Transforms images with ImageMagic tool by calling: 'convert -edge 1 ...' \\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 f f 9 +66 _CONVERT_2 Radial Blur Transforms images with ImageMagic tool by calling: 'convert -radial-blur 30 ...' \\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 f f 9 +67 _CONVERT_3 Fuzzy Transforms images with ImageMagic tool by calling: 'convert -blur 3x.7 -solarize 50% -level 50%,0 ...' \\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 f f 9 +68 _CONVERT_4 3D 1 Transforms images with ImageMagic tool by calling: 'convert -shade 0x45 ...' \\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 f f 9 +69 _CONVERT_5 3D 2 Transforms images with ImageMagic tool by calling: 'convert -shade 90x60 ...' \\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 f f 9 +70 _CONVERT_6 3D 3 Transforms images with ImageMagic tool by calling: 'convert -blur 0x3 -shade 120x45 -normalize ...' \\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 f f 9 +71 _CONVERT_7 Motion Blur Transforms images with ImageMagic tool by calling: 'convert -motion-blur 0x12+45 ...' \\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 f f 9 +72 _CONVERT_8 FFT Transforms images with ImageMagic tool by calling: 'convert -fft -delete 1 -auto-level -evaluate log 100000 ...' \\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 f f 9 +\. + + +-- +-- Data for Name: image_zoom_level_transformations; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_zoom_level_transformations (id, zoom_level_id, channel_id, image_transformation_id) FROM stdin; +7 7 5 34 +8 7 6 42 +9 7 4 26 +10 8 5 34 +11 8 6 42 +12 8 4 26 +13 10 8 58 +14 10 9 66 +15 10 7 50 +\. + + +-- +-- Data for Name: image_zoom_levels; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_zoom_levels (id, is_original, container_dataset_id, physical_dataset_perm_id, path, width, height, color_depth, file_type) FROM stdin; +5 t 2 20130412143119901-199 512 512 32 \N +6 f 2 20130412142942295-198 thumbnails_256x256.h5ar 256 256 32 png +7 f 2 20130412142543232-197 thumbnails_128x128__CONVERT_2.h5ar 128 128 32 jpg +8 f 2 20130412142205843-196 thumbnails_64x64__CONVERT_2.h5ar 64 64 32 jpg +9 t 3 20130412152036861-380 512 512 32 \N +10 f 3 20130412151710024-379 thumbnails_64x64__CONVERT_2.h5ar 64 64 32 jpg +12 t 5 20130412153118625-384 512 512 32 \N +\. + + +-- +-- Data for Name: images; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY images (id, path, image_id, color) FROM stdin; +5185 original/PLATE-1/bPLATE_wB2_s8_cRGB.png \N BLUE +5186 wB2_d2-3_cDAPI \N \N +5187 original/PLATE-1/bPLATE_wB2_s8_cRGB.png \N GREEN +5188 wB2_d2-3_cGFP \N \N +5189 original/PLATE-1/bPLATE_wB2_s8_cRGB.png \N RED +5190 wB2_d2-3_cCy5 \N \N +5191 original/PLATE-1/bPLATE_wD9_s5_cRGB.png \N BLUE +5192 wD9_d2-2_cDAPI \N \N +5193 original/PLATE-1/bPLATE_wD9_s5_cRGB.png \N GREEN +5194 wD9_d2-2_cGFP \N \N +5195 original/PLATE-1/bPLATE_wD9_s5_cRGB.png \N RED +5196 wD9_d2-2_cCy5 \N \N +5197 original/PLATE-1/bPLATE_wG4_s2_cRGB.png \N BLUE +5198 wG4_d2-1_cDAPI \N \N +5199 original/PLATE-1/bPLATE_wG4_s2_cRGB.png \N GREEN +5200 wG4_d2-1_cGFP \N \N +5201 original/PLATE-1/bPLATE_wG4_s2_cRGB.png \N RED +5202 wG4_d2-1_cCy5 \N \N +5203 original/PLATE-1/bPLATE_wA12_s8_cRGB.png \N BLUE +5204 wA12_d2-3_cDAPI \N \N +5205 original/PLATE-1/bPLATE_wA12_s8_cRGB.png \N GREEN +5206 wA12_d2-3_cGFP \N \N +5207 original/PLATE-1/bPLATE_wA12_s8_cRGB.png \N RED +5208 wA12_d2-3_cCy5 \N \N +5209 original/PLATE-1/bPLATE_wD7_s5_cRGB.png \N BLUE +5210 wD7_d2-2_cDAPI \N \N +5211 original/PLATE-1/bPLATE_wD7_s5_cRGB.png \N GREEN +5212 wD7_d2-2_cGFP \N \N +5213 original/PLATE-1/bPLATE_wD7_s5_cRGB.png \N RED +5214 wD7_d2-2_cCy5 \N \N +5215 original/PLATE-1/bPLATE_wG2_s2_cRGB.png \N BLUE +5216 wG2_d2-1_cDAPI \N \N +5217 original/PLATE-1/bPLATE_wG2_s2_cRGB.png \N GREEN +5218 wG2_d2-1_cGFP \N \N +5219 original/PLATE-1/bPLATE_wG2_s2_cRGB.png \N RED +5220 wG2_d2-1_cCy5 \N \N +5221 original/PLATE-1/bPLATE_wB7_s6_cRGB.png \N BLUE +5222 wB7_d3-2_cDAPI \N \N +5223 original/PLATE-1/bPLATE_wB7_s6_cRGB.png \N GREEN +5224 wB7_d3-2_cGFP \N \N +5225 original/PLATE-1/bPLATE_wB7_s6_cRGB.png \N RED +5226 wB7_d3-2_cCy5 \N \N +5227 original/PLATE-1/bPLATE_wB6_s2_cRGB.png \N BLUE +5228 wB6_d2-1_cDAPI \N \N +5229 original/PLATE-1/bPLATE_wB6_s2_cRGB.png \N GREEN +5230 wB6_d2-1_cGFP \N \N +5231 original/PLATE-1/bPLATE_wB6_s2_cRGB.png \N RED +5232 wB6_d2-1_cCy5 \N \N +5233 original/PLATE-1/bPLATE_wE2_s3_cRGB.png \N BLUE +5234 wE2_d3-1_cDAPI \N \N +5235 original/PLATE-1/bPLATE_wE2_s3_cRGB.png \N GREEN +5236 wE2_d3-1_cGFP \N \N +5237 original/PLATE-1/bPLATE_wE2_s3_cRGB.png \N RED +5238 wE2_d3-1_cCy5 \N \N +5239 original/PLATE-1/bPLATE_wA10_s8_cRGB.png \N BLUE +5240 wA10_d2-3_cDAPI \N \N +5241 original/PLATE-1/bPLATE_wA10_s8_cRGB.png \N GREEN +5242 wA10_d2-3_cGFP \N \N +5243 original/PLATE-1/bPLATE_wA10_s8_cRGB.png \N RED +5244 wA10_d2-3_cCy5 \N \N +5245 original/PLATE-1/bPLATE_wD5_s5_cRGB.png \N BLUE +5246 wD5_d2-2_cDAPI \N \N +5247 original/PLATE-1/bPLATE_wD5_s5_cRGB.png \N GREEN +5248 wD5_d2-2_cGFP \N \N +5249 original/PLATE-1/bPLATE_wD5_s5_cRGB.png \N RED +5250 wD5_d2-2_cCy5 \N \N +5251 original/PLATE-1/bPLATE_wF12_s2_cRGB.png \N BLUE +5252 wF12_d2-1_cDAPI \N \N +5253 original/PLATE-1/bPLATE_wF12_s2_cRGB.png \N GREEN +5254 wF12_d2-1_cGFP \N \N +5255 original/PLATE-1/bPLATE_wF12_s2_cRGB.png \N RED +5256 wF12_d2-1_cCy5 \N \N +5257 original/PLATE-1/bPLATE_wF10_s9_cRGB.png \N BLUE +5258 wF10_d3-3_cDAPI \N \N +5259 original/PLATE-1/bPLATE_wF10_s9_cRGB.png \N GREEN +5260 wF10_d3-3_cGFP \N \N +5261 original/PLATE-1/bPLATE_wF10_s9_cRGB.png \N RED +5262 wF10_d3-3_cCy5 \N \N +5263 original/PLATE-1/bPLATE_wC6_s6_cRGB.png \N BLUE +5264 wC6_d3-2_cDAPI \N \N +5265 original/PLATE-1/bPLATE_wC6_s6_cRGB.png \N GREEN +5266 wC6_d3-2_cGFP \N \N +5267 original/PLATE-1/bPLATE_wC6_s6_cRGB.png \N RED +5268 wC6_d3-2_cCy5 \N \N +5269 original/PLATE-1/bPLATE_wF1_s3_cRGB.png \N BLUE +5270 wF1_d3-1_cDAPI \N \N +5271 original/PLATE-1/bPLATE_wF1_s3_cRGB.png \N GREEN +5272 wF1_d3-1_cGFP \N \N +5273 original/PLATE-1/bPLATE_wF1_s3_cRGB.png \N RED +5274 wF1_d3-1_cCy5 \N \N +5275 original/PLATE-1/bPLATE_wH11_s6_cRGB.png \N BLUE +5276 wH11_d3-2_cDAPI \N \N +5277 original/PLATE-1/bPLATE_wH11_s6_cRGB.png \N GREEN +5278 wH11_d3-2_cGFP \N \N +5279 original/PLATE-1/bPLATE_wH11_s6_cRGB.png \N RED +5280 wH11_d3-2_cCy5 \N \N +5281 original/PLATE-1/bPLATE_wF4_s9_cRGB.png \N BLUE +5282 wF4_d3-3_cDAPI \N \N +5283 original/PLATE-1/bPLATE_wF4_s9_cRGB.png \N GREEN +5284 wF4_d3-3_cGFP \N \N +5285 original/PLATE-1/bPLATE_wF4_s9_cRGB.png \N RED +5286 wF4_d3-3_cCy5 \N \N +5287 original/PLATE-1/bPLATE_wA11_s1_cRGB.png \N BLUE +5288 wA11_d1-1_cDAPI \N \N +5289 original/PLATE-1/bPLATE_wA11_s1_cRGB.png \N GREEN +5290 wA11_d1-1_cGFP \N \N +5291 original/PLATE-1/bPLATE_wA11_s1_cRGB.png \N RED +5292 wA11_d1-1_cCy5 \N \N +5293 original/PLATE-1/bPLATE_wA9_s2_cRGB.png \N BLUE +5294 wA9_d2-1_cDAPI \N \N +5295 original/PLATE-1/bPLATE_wA9_s2_cRGB.png \N GREEN +5296 wA9_d2-1_cGFP \N \N +5297 original/PLATE-1/bPLATE_wA9_s2_cRGB.png \N RED +5298 wA9_d2-1_cCy5 \N \N +5299 original/PLATE-1/bPLATE_wH1_s8_cRGB.png \N BLUE +5300 wH1_d2-3_cDAPI \N \N +5301 original/PLATE-1/bPLATE_wH1_s8_cRGB.png \N GREEN +5302 wH1_d2-3_cGFP \N \N +5303 original/PLATE-1/bPLATE_wH1_s8_cRGB.png \N RED +5304 wH1_d2-3_cCy5 \N \N +5305 original/PLATE-1/bPLATE_wD4_s8_cRGB.png \N BLUE +5306 wD4_d2-3_cDAPI \N \N +5307 original/PLATE-1/bPLATE_wD4_s8_cRGB.png \N GREEN +5308 wD4_d2-3_cGFP \N \N +5309 original/PLATE-1/bPLATE_wD4_s8_cRGB.png \N RED +5310 wD4_d2-3_cCy5 \N \N +5311 original/PLATE-1/bPLATE_wF11_s5_cRGB.png \N BLUE +5312 wF11_d2-2_cDAPI \N \N +5313 original/PLATE-1/bPLATE_wF11_s5_cRGB.png \N GREEN +5314 wF11_d2-2_cGFP \N \N +5315 original/PLATE-1/bPLATE_wF11_s5_cRGB.png \N RED +5316 wF11_d2-2_cCy5 \N \N +5317 original/PLATE-1/bPLATE_wA12_s6_cRGB.png \N BLUE +5318 wA12_d3-2_cDAPI \N \N +5319 original/PLATE-1/bPLATE_wA12_s6_cRGB.png \N GREEN +5320 wA12_d3-2_cGFP \N \N +5321 original/PLATE-1/bPLATE_wA12_s6_cRGB.png \N RED +5322 wA12_d3-2_cCy5 \N \N +5323 original/PLATE-1/bPLATE_wD7_s3_cRGB.png \N BLUE +5324 wD7_d3-1_cDAPI \N \N +5325 original/PLATE-1/bPLATE_wD7_s3_cRGB.png \N GREEN +5326 wD7_d3-1_cGFP \N \N +5327 original/PLATE-1/bPLATE_wD7_s3_cRGB.png \N RED +5328 wD7_d3-1_cCy5 \N \N +5329 original/PLATE-1/bPLATE_wH3_s6_cRGB.png \N BLUE +5330 wH3_d3-2_cDAPI \N \N +5331 original/PLATE-1/bPLATE_wH3_s6_cRGB.png \N GREEN +5332 wH3_d3-2_cGFP \N \N +5333 original/PLATE-1/bPLATE_wH3_s6_cRGB.png \N RED +5334 wH3_d3-2_cCy5 \N \N +5335 original/PLATE-1/bPLATE_wE8_s9_cRGB.png \N BLUE +5336 wE8_d3-3_cDAPI \N \N +5337 original/PLATE-1/bPLATE_wE8_s9_cRGB.png \N GREEN +5338 wE8_d3-3_cGFP \N \N +5339 original/PLATE-1/bPLATE_wE8_s9_cRGB.png \N RED +5340 wE8_d3-3_cCy5 \N \N +5341 original/PLATE-1/bPLATE_wD10_s3_cRGB.png \N BLUE +5342 wD10_d3-1_cDAPI \N \N +5343 original/PLATE-1/bPLATE_wD10_s3_cRGB.png \N GREEN +5344 wD10_d3-1_cGFP \N \N +5345 original/PLATE-1/bPLATE_wD10_s3_cRGB.png \N RED +5346 wD10_d3-1_cCy5 \N \N +5347 original/PLATE-1/bPLATE_wB3_s6_cRGB.png \N BLUE +5348 wB3_d3-2_cDAPI \N \N +5349 original/PLATE-1/bPLATE_wB3_s6_cRGB.png \N GREEN +5350 wB3_d3-2_cGFP \N \N +5351 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original/PLATE-1.OVERLAY-1/cOVERLAY-1_wA4_s4.png \N \N +\. + + +-- +-- Data for Name: spots; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY spots (id, x, y, cont_id) FROM stdin; +97 1 1 1 +98 2 1 1 +99 3 1 1 +100 4 1 1 +101 5 1 1 +102 6 1 1 +103 7 1 1 +104 8 1 1 +105 9 1 1 +106 10 1 1 +107 11 1 1 +108 12 1 1 +109 1 2 1 +110 2 2 1 +111 3 2 1 +112 4 2 1 +113 5 2 1 +114 6 2 1 +115 7 2 1 +116 8 2 1 +117 9 2 1 +118 10 2 1 +119 11 2 1 +120 12 2 1 +121 1 3 1 +122 2 3 1 +123 3 3 1 +124 4 3 1 +125 5 3 1 +126 6 3 1 +127 7 3 1 +128 8 3 1 +129 9 3 1 +130 10 3 1 +131 11 3 1 +132 12 3 1 +133 1 4 1 +134 2 4 1 +135 3 4 1 +136 4 4 1 +137 5 4 1 +138 6 4 1 +139 7 4 1 +140 8 4 1 +141 9 4 1 +142 10 4 1 +143 11 4 1 +144 12 4 1 +145 1 5 1 +146 2 5 1 +147 3 5 1 +148 4 5 1 +149 5 5 1 +150 6 5 1 +151 7 5 1 +152 8 5 1 +153 9 5 1 +154 10 5 1 +155 11 5 1 +156 12 5 1 +157 1 6 1 +158 2 6 1 +159 3 6 1 +160 4 6 1 +161 5 6 1 +162 6 6 1 +163 7 6 1 +164 8 6 1 +165 9 6 1 +166 10 6 1 +167 11 6 1 +168 12 6 1 +169 1 7 1 +170 2 7 1 +171 3 7 1 +172 4 7 1 +173 5 7 1 +174 6 7 1 +175 7 7 1 +176 8 7 1 +177 9 7 1 +178 10 7 1 +179 11 7 1 +180 12 7 1 +181 1 8 1 +182 2 8 1 +183 3 8 1 +184 4 8 1 +185 5 8 1 +186 6 8 1 +187 7 8 1 +188 8 8 1 +189 9 8 1 +190 10 8 1 +191 11 8 1 +192 12 8 1 +193 1 1 2 +194 2 1 2 +195 3 1 2 +196 4 1 2 +197 5 1 2 +198 6 1 2 +199 7 1 2 +200 8 1 2 +201 9 1 2 +202 10 1 2 +203 11 1 2 +204 12 1 2 +205 1 2 2 +206 2 2 2 +207 3 2 2 +208 4 2 2 +209 5 2 2 +210 6 2 2 +211 7 2 2 +212 8 2 2 +213 9 2 2 +214 10 2 2 +215 11 2 2 +216 12 2 2 +217 1 3 2 +218 2 3 2 +219 3 3 2 +220 4 3 2 +221 5 3 2 +222 6 3 2 +223 7 3 2 +224 8 3 2 +225 9 3 2 +226 10 3 2 +227 11 3 2 +228 12 3 2 +229 1 4 2 +230 2 4 2 +231 3 4 2 +232 4 4 2 +233 5 4 2 +234 6 4 2 +235 7 4 2 +236 8 4 2 +237 9 4 2 +238 10 4 2 +239 11 4 2 +240 12 4 2 +241 1 5 2 +242 2 5 2 +243 3 5 2 +244 4 5 2 +245 5 5 2 +246 6 5 2 +247 7 5 2 +248 8 5 2 +249 9 5 2 +250 10 5 2 +251 11 5 2 +252 12 5 2 +253 1 6 2 +254 2 6 2 +255 3 6 2 +256 4 6 2 +257 5 6 2 +258 6 6 2 +259 7 6 2 +260 8 6 2 +261 9 6 2 +262 10 6 2 +263 11 6 2 +264 12 6 2 +265 1 7 2 +266 2 7 2 +267 3 7 2 +268 4 7 2 +269 5 7 2 +270 6 7 2 +271 7 7 2 +272 8 7 2 +273 9 7 2 +274 10 7 2 +275 11 7 2 +276 12 7 2 +277 1 8 2 +278 2 8 2 +279 3 8 2 +280 4 8 2 +281 5 8 2 +282 6 8 2 +283 7 8 2 +284 8 8 2 +285 9 8 2 +286 10 8 2 +287 11 8 2 +288 12 8 2 +\. + + +-- +-- Name: acquired_images_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT acquired_images_pkey PRIMARY KEY (id); + + +-- +-- Name: analysis_data_sets_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY analysis_data_sets + ADD CONSTRAINT analysis_data_sets_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: analysis_data_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY analysis_data_sets + ADD CONSTRAINT analysis_data_sets_pkey PRIMARY KEY (id); + + +-- +-- Name: channel_stacks_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channel_stacks + ADD CONSTRAINT channel_stacks_pkey PRIMARY KEY (id); + + +-- +-- Name: channels_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT channels_pkey PRIMARY KEY (id); + + +-- +-- Name: channels_uk_1; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT channels_uk_1 UNIQUE (code, ds_id); + + +-- +-- Name: channels_uk_2; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT channels_uk_2 UNIQUE (code, exp_id); + + +-- +-- Name: containers_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY containers + ADD CONSTRAINT containers_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: containers_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY containers + ADD CONSTRAINT containers_pkey PRIMARY KEY (id); + + +-- +-- Name: experiments_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments + ADD CONSTRAINT experiments_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: experiments_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments + ADD CONSTRAINT experiments_pkey PRIMARY KEY (id); + + +-- +-- Name: feature_defs_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_defs + ADD CONSTRAINT feature_defs_pkey PRIMARY KEY (id); + + +-- +-- Name: feature_defs_uk_1; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_defs + ADD CONSTRAINT feature_defs_uk_1 UNIQUE (code, ds_id); + + +-- +-- Name: feature_values_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_values + ADD CONSTRAINT feature_values_pkey PRIMARY KEY (id); + + +-- +-- Name: feature_vocabulary_terms_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_vocabulary_terms + ADD CONSTRAINT feature_vocabulary_terms_pkey PRIMARY KEY (id); + + +-- +-- Name: image_data_sets_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_data_sets + ADD CONSTRAINT image_data_sets_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: image_data_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_data_sets + ADD CONSTRAINT image_data_sets_pkey PRIMARY KEY (id); + + +-- +-- Name: image_transformations_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_transformations + ADD CONSTRAINT image_transformations_pkey PRIMARY KEY (id); + + +-- +-- Name: image_transformations_uk_1; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_transformations + ADD CONSTRAINT image_transformations_uk_1 UNIQUE (code, channel_id); + + +-- +-- Name: image_zoom_level_transformations_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_zoom_level_transformations + ADD CONSTRAINT image_zoom_level_transformations_pkey PRIMARY KEY (id); + + +-- +-- Name: image_zoom_levels_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_zoom_levels + ADD CONSTRAINT image_zoom_levels_pkey PRIMARY KEY (id); + + +-- +-- Name: images_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY images + ADD CONSTRAINT images_pkey PRIMARY KEY (id); + + +-- +-- Name: spots_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY spots + ADD CONSTRAINT spots_pkey PRIMARY KEY (id); + + +-- +-- Name: analysis_data_sets_cont_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX analysis_data_sets_cont_idx ON analysis_data_sets USING btree (cont_id); + + +-- +-- Name: channel_stacks_dim_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channel_stacks_dim_idx ON channel_stacks USING btree (x, y, z_in_m, t_in_sec); + + +-- +-- Name: channel_stacks_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channel_stacks_ds_idx ON channel_stacks USING btree (ds_id); + + +-- +-- Name: channel_stacks_spot_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channel_stacks_spot_idx ON channel_stacks USING btree (spot_id); + + +-- +-- Name: channels_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channels_ds_idx ON channels USING btree (ds_id); + + +-- +-- Name: containers_expe_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX containers_expe_idx ON containers USING btree (expe_id); + + +-- +-- Name: feature_defs_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_defs_ds_idx ON feature_defs USING btree (ds_id); + + +-- +-- Name: feature_values_fd_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_values_fd_idx ON feature_values USING btree (fd_id); + + +-- +-- Name: feature_values_z_and_t_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_values_z_and_t_idx ON feature_values USING btree (z_in_m, t_in_sec); + + +-- +-- Name: feature_vocabulary_terms_fd_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_vocabulary_terms_fd_idx ON feature_vocabulary_terms USING btree (fd_id); + + +-- +-- Name: image_data_sets_cont_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_data_sets_cont_idx ON image_data_sets USING btree (cont_id); + + +-- +-- Name: image_transformations_channels_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_transformations_channels_idx ON image_transformations USING btree (channel_id); + + +-- +-- Name: image_zoom_level_transformations_zlid_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_zoom_level_transformations_zlid_idx ON image_zoom_level_transformations USING btree (zoom_level_id); + + +-- +-- Name: image_zoom_levels_cont_fk_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_zoom_levels_cont_fk_idx ON image_zoom_levels USING btree (container_dataset_id); + + +-- +-- Name: image_zoom_levels_phys_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_zoom_levels_phys_ds_idx ON image_zoom_levels USING btree (physical_dataset_perm_id); + + +-- +-- Name: images_channel_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_channel_idx ON acquired_images USING btree (channel_id); + + +-- +-- Name: images_channel_stack_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_channel_stack_idx ON acquired_images USING btree (channel_stack_id); + + +-- +-- Name: images_img_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_img_idx ON acquired_images USING btree (img_id); + + +-- +-- Name: images_thumbnail_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_thumbnail_idx ON acquired_images USING btree (thumbnail_id); + + +-- +-- Name: spots_cont_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX spots_cont_idx ON spots USING btree (cont_id); + + +-- +-- Name: spots_coords_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX spots_coords_idx ON spots USING btree (cont_id, x, y); + + +-- +-- Name: channel_stacks_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER channel_stacks_check BEFORE INSERT OR UPDATE ON channel_stacks FOR EACH ROW EXECUTE PROCEDURE channel_stacks_check(); + + +-- +-- Name: empty_acquired_images; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER empty_acquired_images BEFORE UPDATE ON acquired_images FOR EACH ROW WHEN (((new.img_id IS NULL) AND (new.thumbnail_id IS NULL))) EXECUTE PROCEDURE delete_empty_acquired_images(); + + +-- +-- Name: image_transformations_default_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER image_transformations_default_check BEFORE INSERT OR UPDATE ON image_transformations FOR EACH ROW EXECUTE PROCEDURE image_transformations_default_check(); + + +-- +-- Name: unused_images; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER unused_images AFTER DELETE ON acquired_images FOR EACH ROW EXECUTE PROCEDURE delete_unused_images(); + + +-- +-- Name: unused_nulled_images; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER unused_nulled_images AFTER UPDATE ON acquired_images FOR EACH ROW EXECUTE PROCEDURE delete_unused_nulled_images(); + + +-- +-- Name: fk_analysis_data_set_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY analysis_data_sets + ADD CONSTRAINT fk_analysis_data_set_1 FOREIGN KEY (cont_id) REFERENCES containers(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channel_stacks_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channel_stacks + ADD CONSTRAINT fk_channel_stacks_1 FOREIGN KEY (spot_id) REFERENCES spots(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channel_stacks_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channel_stacks + ADD CONSTRAINT fk_channel_stacks_2 FOREIGN KEY (ds_id) REFERENCES image_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channels_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT fk_channels_1 FOREIGN KEY (ds_id) REFERENCES image_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channels_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT fk_channels_2 FOREIGN KEY (exp_id) REFERENCES experiments(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_feature_defs_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY feature_defs + ADD CONSTRAINT fk_feature_defs_1 FOREIGN KEY (ds_id) REFERENCES analysis_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_feature_values_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY feature_values + ADD CONSTRAINT fk_feature_values_1 FOREIGN KEY (fd_id) REFERENCES feature_defs(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_feature_vocabulary_terms_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY feature_vocabulary_terms + ADD CONSTRAINT fk_feature_vocabulary_terms_1 FOREIGN KEY (fd_id) REFERENCES feature_defs(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_data_set_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_data_sets + ADD CONSTRAINT fk_image_data_set_1 FOREIGN KEY (cont_id) REFERENCES containers(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_transformations_channel; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_transformations + ADD CONSTRAINT fk_image_transformations_channel FOREIGN KEY (channel_id) REFERENCES channels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_zoom_level_transformations_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_zoom_level_transformations + ADD CONSTRAINT fk_image_zoom_level_transformations_1 FOREIGN KEY (zoom_level_id) REFERENCES image_zoom_levels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_zoom_level_transformations_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_zoom_level_transformations + ADD CONSTRAINT fk_image_zoom_level_transformations_2 FOREIGN KEY (channel_id) REFERENCES channels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_zoom_levels_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_zoom_levels + ADD CONSTRAINT fk_image_zoom_levels_1 FOREIGN KEY (container_dataset_id) REFERENCES image_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_images_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_1 FOREIGN KEY (channel_stack_id) REFERENCES channel_stacks(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_images_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_2 FOREIGN KEY (channel_id) REFERENCES channels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_images_3; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_3 FOREIGN KEY (img_id) REFERENCES images(id) ON UPDATE CASCADE ON DELETE SET NULL; + + +-- +-- Name: fk_images_4; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_4 FOREIGN KEY (thumbnail_id) REFERENCES images(id) ON UPDATE CASCADE ON DELETE SET NULL; + + +-- +-- Name: fk_sample_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY containers + ADD CONSTRAINT fk_sample_1 FOREIGN KEY (expe_id) REFERENCES experiments(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_spot_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY spots + ADD CONSTRAINT fk_spot_1 FOREIGN KEY (cont_id) REFERENCES containers(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: public; Type: ACL; Schema: -; Owner: - +-- + +REVOKE ALL ON SCHEMA public FROM PUBLIC; +REVOKE ALL ON SCHEMA public FROM postgres; +GRANT ALL ON SCHEMA public TO postgres; +GRANT ALL ON SCHEMA public TO PUBLIC; + + +-- +-- PostgreSQL database dump complete +-- + diff --git a/js-test/servers/common/datastore_server/db/pathinfo_test_js_common.sql b/js-test/servers/common/datastore_server/db/pathinfo_test_js_common.sql new file mode 100644 index 0000000000000000000000000000000000000000..b9887ebc1e22be8145091aa5c52634329c371be9 --- /dev/null +++ b/js-test/servers/common/datastore_server/db/pathinfo_test_js_common.sql @@ -0,0 +1,13318 @@ +-- +-- PostgreSQL database dump +-- + +SET statement_timeout = 0; +SET client_encoding = 'UTF8'; +SET standard_conforming_strings = on; +SET check_function_bodies = false; +SET client_min_messages = warning; + +-- +-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: - +-- + +CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog; + + +-- +-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: - +-- + +COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language'; + + +SET search_path = public, pg_catalog; + +-- +-- Name: boolean_char; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN boolean_char AS boolean DEFAULT false; + + +-- +-- Name: code; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN code AS character varying(40); + + +-- +-- Name: file_path; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN file_path AS character varying(1000); + + +-- +-- Name: tech_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN tech_id AS bigint; + + +-- +-- Name: time_stamp; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN time_stamp AS timestamp with time zone; + + +SET default_tablespace = ''; + +SET default_with_oids = false; + +-- +-- Name: data_set_files; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_files ( + id bigint NOT NULL, + dase_id tech_id NOT NULL, + parent_id tech_id, + relative_path file_path NOT NULL, + file_name file_path NOT NULL, + size_in_bytes bigint NOT NULL, + checksum_crc32 integer, + is_directory boolean_char NOT NULL, + last_modified time_stamp DEFAULT now() NOT NULL +); + + +-- +-- Name: data_set_files_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_set_files_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_set_files_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE data_set_files_id_seq OWNED BY data_set_files.id; + + +-- +-- Name: data_set_files_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_set_files_id_seq', 13022, true); + + +-- +-- Name: data_sets; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_sets ( + id bigint NOT NULL, + code code NOT NULL, + location file_path NOT NULL +); + + +-- +-- Name: data_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_sets_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE data_sets_id_seq OWNED BY data_sets.id; + + +-- +-- Name: data_sets_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_sets_id_seq', 12, true); + + +-- +-- Name: database_version_logs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE database_version_logs ( + db_version character varying(4) NOT NULL, + module_name character varying(250), + run_status character varying(10), + run_status_timestamp timestamp without time zone, + module_code bytea, + run_exception bytea +); + + +-- +-- Name: events; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE events ( + last_seen_deletion_event_id tech_id NOT NULL +); + + +-- +-- Name: last_feeding_event; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE last_feeding_event ( + registration_timestamp time_stamp NOT NULL +); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE data_set_files ALTER COLUMN id SET DEFAULT nextval('data_set_files_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE data_sets ALTER COLUMN id SET DEFAULT nextval('data_sets_id_seq'::regclass); + + +-- +-- Data for Name: data_set_files; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_files (id, dase_id, parent_id, relative_path, file_name, size_in_bytes, checksum_crc32, is_directory, last_modified) FROM stdin; +1 1 \N 20130412142942295-198 6638510 \N t 2013-04-12 14:31:33+02 +2 1 1 thumbnails_256x256.h5ar thumbnails_256x256.h5ar 6638510 \N t 2013-04-12 14:31:19+02 +3 1 2 thumbnails_256x256.h5ar/wA10_d1-1_cCy5.png wA10_d1-1_cCy5.png 1505 -1396446681 f 2013-04-12 14:29:42+02 +4 1 2 thumbnails_256x256.h5ar/wA10_d1-1_cDAPI.png wA10_d1-1_cDAPI.png 3356 -162622396 f 2013-04-12 14:29:42+02 +5 1 2 thumbnails_256x256.h5ar/wA10_d1-1_cGFP.png wA10_d1-1_cGFP.png 2918 -1231838987 f 2013-04-12 14:29:42+02 +6 1 2 thumbnails_256x256.h5ar/wA10_d1-2_cCy5.png wA10_d1-2_cCy5.png 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cOVERLAY-1_wH6_s7.png 13386 684973730 f 2013-04-12 10:55:56+02 +12952 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH6_s8.png cOVERLAY-1_wH6_s8.png 13386 684973730 f 2013-04-12 10:55:57+02 +12953 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH6_s9.png cOVERLAY-1_wH6_s9.png 13386 684973730 f 2013-04-12 10:55:57+02 +12954 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s1.png cOVERLAY-1_wH7_s1.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12955 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s2.png cOVERLAY-1_wH7_s2.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12956 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s3.png cOVERLAY-1_wH7_s3.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12957 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s4.png cOVERLAY-1_wH7_s4.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12958 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s5.png cOVERLAY-1_wH7_s5.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12959 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s6.png cOVERLAY-1_wH7_s6.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12960 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s7.png cOVERLAY-1_wH7_s7.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12961 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s8.png cOVERLAY-1_wH7_s8.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12962 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH7_s9.png cOVERLAY-1_wH7_s9.png 12705 -460578159 f 2013-04-12 10:55:57+02 +12963 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s1.png cOVERLAY-1_wH8_s1.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12964 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s2.png cOVERLAY-1_wH8_s2.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12965 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s3.png cOVERLAY-1_wH8_s3.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12966 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s4.png cOVERLAY-1_wH8_s4.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12967 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s5.png cOVERLAY-1_wH8_s5.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12968 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s6.png cOVERLAY-1_wH8_s6.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12969 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s7.png cOVERLAY-1_wH8_s7.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12970 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s8.png cOVERLAY-1_wH8_s8.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12971 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH8_s9.png cOVERLAY-1_wH8_s9.png 13439 1194360252 f 2013-04-12 10:55:57+02 +12972 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s1.png cOVERLAY-1_wH9_s1.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12973 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s2.png cOVERLAY-1_wH9_s2.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12974 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s3.png cOVERLAY-1_wH9_s3.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12975 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s4.png cOVERLAY-1_wH9_s4.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12976 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s5.png cOVERLAY-1_wH9_s5.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12977 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s6.png cOVERLAY-1_wH9_s6.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12978 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s7.png cOVERLAY-1_wH9_s7.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12979 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s8.png cOVERLAY-1_wH9_s8.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12980 8 12116 original/PLATE-1.OVERLAY-1/cOVERLAY-1_wH9_s9.png cOVERLAY-1_wH9_s9.png 13366 1932439931 f 2013-04-12 10:55:57+02 +12981 9 \N 20130412153659945-390 3747 \N t 2013-04-12 15:37:03+02 +12982 9 12981 original original 3747 \N t 2013-04-12 15:37:02+02 +12983 9 12982 original/PLATE-1.analysis1.csv PLATE-1.analysis1.csv 3747 634055909 f 2013-04-12 10:56:16+02 +13017 11 \N 20130424111751432-431 14 \N t 2013-04-24 11:17:54+02 +13018 11 13017 feature_lists feature_lists 14 \N t 2013-04-24 11:17:51+02 +13019 11 13018 feature_lists/BARCODE_AND_STATE_FEATURE_LIST BARCODE_AND_STATE_FEATURE_LIST 14 293427254 f 2013-04-24 11:17:51+02 +13020 12 \N 20130424111751209-430 25 \N t 2013-04-24 11:17:54+02 +13021 12 13020 feature_lists feature_lists 25 \N t 2013-04-24 11:17:51+02 +13022 12 13021 feature_lists/NUMBER_FEATURE_LIST NUMBER_FEATURE_LIST 25 1253723016 f 2013-04-24 11:17:51+02 +\. + + +-- +-- Data for Name: data_sets; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_sets (id, code, location) FROM stdin; +1 20130412142942295-198 1FD3FF61-1576-4908-AE3D-296E60B4CE06/4f/6d/30/20130412142942295-198 +2 20130412142205843-196 1FD3FF61-1576-4908-AE3D-296E60B4CE06/0d/71/e9/20130412142205843-196 +3 20130412143119901-199 1FD3FF61-1576-4908-AE3D-296E60B4CE06/44/10/06/20130412143119901-199 +4 20130412142543232-197 1FD3FF61-1576-4908-AE3D-296E60B4CE06/40/26/e3/20130412142543232-197 +6 20130412151710024-379 1FD3FF61-1576-4908-AE3D-296E60B4CE06/c0/e2/31/20130412151710024-379 +7 20130412152036861-380 1FD3FF61-1576-4908-AE3D-296E60B4CE06/7e/71/80/20130412152036861-380 +8 20130412153118625-384 1FD3FF61-1576-4908-AE3D-296E60B4CE06/2e/ac/5a/20130412153118625-384 +9 20130412153659945-390 1FD3FF61-1576-4908-AE3D-296E60B4CE06/29/f1/0c/20130412153659945-390 +11 20130424111751432-431 1FD3FF61-1576-4908-AE3D-296E60B4CE06/fe/c5/45/20130424111751432-431 +12 20130424111751209-430 1FD3FF61-1576-4908-AE3D-296E60B4CE06/4f/5a/52/20130424111751209-430 +\. + + +-- +-- Data for Name: database_version_logs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY database_version_logs (db_version, module_name, run_status, run_status_timestamp, module_code, run_exception) FROM stdin; +006 datastore_server/sql/postgresql/006/schema-006.sql SUCCESS 2013-04-12 10:06:04.38 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\N +\. + + +-- +-- Data for Name: events; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY events (last_seen_deletion_event_id) FROM stdin; +175 +\. + + +-- +-- Data for Name: last_feeding_event; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY last_feeding_event (registration_timestamp) FROM stdin; +\. + + +-- +-- Name: data_set_files_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_files + ADD CONSTRAINT data_set_files_pkey PRIMARY KEY (id); + + +-- +-- Name: data_sets_code_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_sets + ADD CONSTRAINT data_sets_code_key UNIQUE (code); + + +-- +-- Name: data_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_sets + ADD CONSTRAINT data_sets_pkey PRIMARY KEY (id); + + +-- +-- Name: data_set_files_dase_id_file_name_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_file_name_idx ON data_set_files USING btree (dase_id, file_name); + + +-- +-- Name: data_set_files_dase_id_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_idx ON data_set_files USING btree (dase_id); + + +-- +-- Name: data_set_files_dase_id_parent_id_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_parent_id_idx ON data_set_files USING btree (dase_id, parent_id); + + +-- +-- Name: data_set_files_dase_id_relative_path_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_relative_path_idx ON data_set_files USING btree (dase_id, relative_path); + + +-- +-- Name: data_sets_code_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_sets_code_idx ON data_sets USING btree (code); + + +-- +-- Name: fk_data_set_files_data_set_files; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_files + ADD CONSTRAINT fk_data_set_files_data_set_files FOREIGN KEY (parent_id) REFERENCES data_set_files(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_data_set_files_data_sets; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_files + ADD CONSTRAINT fk_data_set_files_data_sets FOREIGN KEY (dase_id) REFERENCES data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: public; Type: ACL; Schema: -; Owner: - +-- + +REVOKE ALL ON SCHEMA public FROM PUBLIC; +REVOKE ALL ON SCHEMA public FROM postgres; +GRANT ALL ON SCHEMA public TO postgres; +GRANT ALL ON SCHEMA public TO PUBLIC; + + +-- +-- PostgreSQL database dump complete +-- + diff --git a/js-test/servers/common/datastore_server/dss-tmp/.gitignore b/js-test/servers/common/datastore_server/dss-tmp/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/etc/log.xml b/js-test/servers/common/datastore_server/etc/log.xml new file mode 100644 index 0000000000000000000000000000000000000000..5cee0a68436a19a6c4ec4b14b580e6d9f75bf84f --- /dev/null +++ b/js-test/servers/common/datastore_server/etc/log.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8" ?> +<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd"> + +<log4j:configuration xmlns:log4j='http://jakarta.apache.org/log4j/'> + + <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender"> + <layout class="org.apache.log4j.PatternLayout"> + <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/> + </layout> + </appender> + + <appender name="NULL" class="org.apache.log4j.varia.NullAppender" /> + + <root> + <priority value ="info" /> + <appender-ref ref="STDOUT" /> + </root> + +</log4j:configuration> diff --git a/js-test/servers/common/datastore_server/etc/openBIS.keystore b/js-test/servers/common/datastore_server/etc/openBIS.keystore new file mode 100644 index 0000000000000000000000000000000000000000..776d15ff5354656cb250ea54cd9134af48feaa93 Binary files /dev/null and b/js-test/servers/common/datastore_server/etc/openBIS.keystore differ diff --git a/js-test/servers/common/datastore_server/etc/service.properties b/js-test/servers/common/datastore_server/etc/service.properties new file mode 100644 index 0000000000000000000000000000000000000000..fa98ee87bc8d1e3258d258a6d86c58e49816236e --- /dev/null +++ b/js-test/servers/common/datastore_server/etc/service.properties @@ -0,0 +1,169 @@ +# Unique code of this Data Store Server. Not more than 40 characters. +data-store-server-code = DSS1 + +# host name of the machine on which the datastore server is running +host-address = http://localhost + +# parent directory of the store directory and all the dropboxes +root-dir = data + +# The root directory of the data store +storeroot-dir = ${root-dir}/store + +incoming-root-dir = ${root-dir} + +# Cache for data set files from other Data Store Servers +cache-workspace-folder ${root-dir}/dss-cache + +# The directory where the command queue file is located; defaults to storeroot-dir +commandqueue-dir = + +# Port +port = 20001 +use-ssl = false + +# Session timeout in minutes +session-timeout = 720 + +# Path to the keystore +keystore.path = etc/openBIS.keystore +# Password of the keystore +keystore.password = changeit +# Key password of the keystore +keystore.key-password = changeit + +# The check interval (in seconds) +check-interval = 5 + +quiet-period = 10 + + +# The time-out for clean up work in the shutdown sequence (in seconds). +# Note that that the maximal time for the shutdown sequence to complete can be as large +# as twice this time. +# Remark: On a network file system, it is not recommended to turn this value to something +# lower than 180. +shutdown-timeout = 180 + +# The minimum time (in seconds) of availability of the data stream since moment when user requested +# for the data stream url. If not specified default value (20 seconds) will be used. +# minimum-time-to-keep-streams-in-sec = 20 + +#�If free disk space goes below value defined here, a notification email will be sent. +# Value must be specified in kilobytes (1048576 = 1024 * 1024 = 1GB). If no high water mark is +# specified or if value is negative, the system will not be watching. There are 2 different kinds +# of highwater mark supported: the one that is checking the space on the store, and one that is +# checking the amount of free space for recovery state (on the local filesystem). +highwater-mark = -1 +recovery-highwater-mark = -1 + +# If a data set is successfully registered it sends out an email to the registrator. +# If this property is not specified, no email is sent to the registrator. This property +# does not affect the mails which are sent, when the data set could not be registered. +notify-successful-registration = false + +# The URL of the openBIS server +server-url = ${host-address}:20000 + +# The username to use when contacting the openBIS server +username = etlserver + +# The password for the etlserver user who contacts the openBIS server +password=e1AWO4f0ro + +# The base URL for Web client access to the data store server. +download-url = ${host-address}:${port} + +# SMTP properties (must start with 'mail' to be considered). +# The current configuration saves the emails in the file system in the root directory +mail.smtp.host = file://${root-dir} +# mail.smtp.host = localhost +# mail.from = openbis-dss@localhost +# mail.smtp.user = +# mail.smtp.password = + + +# Data sources +data-sources = path-info-db + +# Data source for pathinfo database +path-info-db.version-holder-class = ch.systemsx.cisd.openbis.dss.generic.shared.PathInfoDatabaseVersionHolder +path-info-db.databaseEngineCode = postgresql +path-info-db.basicDatabaseName = pathinfo +# The host and optionally port. Default is 'localhost'. +# path-info-db.urlHostPart = +path-info-db.databaseKind = test_js_common +path-info-db.scriptFolder = datastore_server/sql + +# --------------------------------------------------------------------------- +# maintenance plugins configuration +# --------------------------------------------------------------------------- + +# Comma separated names of maintenance plugins. Each plugin should have configuration properties prefixed with its name. +maintenance-plugins = post-registration, path-info-deletion + +# Maintenance task for post registration of all paths of a freshly registered data set to be fed into pathinfo database +post-registration.class = ch.systemsx.cisd.etlserver.postregistration.PostRegistrationMaintenanceTask +post-registration.interval = 30 +post-registration.cleanup-tasks-folder = ${root-dir}/post-registration/cleanup-tasks +post-registration.last-seen-data-set-file = ${root-dir}/post-registration/last-seen-data-set.txt +post-registration.post-registration-tasks = pathinfo-feeding +post-registration.pathinfo-feeding.class = ch.systemsx.cisd.etlserver.path.PathInfoDatabaseFeedingTask +post-registration.pathinfo-feeding.compute-checksum = true + +# Maintenance task for deleting entries from pathinfo database after deletion of a data set +path-info-deletion.class = ch.systemsx.cisd.etlserver.plugins.DeleteFromExternalDBMaintenanceTask +path-info-deletion.interval = 120 +path-info-deletion.data-source = path-info-db +path-info-deletion.data-set-table-name = data_sets +path-info-deletion.data-set-perm-id = CODE + +# --------------------------------------------------------------------------- +# processing plugins configuration +# --------------------------------------------------------------------------- + +# Comma separated names of processing plugins. Each plugin should have configuration properties prefixed with its name. +processing-plugins = path-info-db-consistency-check + +# Processing task that checks the consistency between the data store and the meta information stored in the PathInfoDB. +# It sends out an email which contains all differences found. +path-info-db-consistency-check.label = Path Info DB consistency check +path-info-db-consistency-check.dataset-types = .* +path-info-db-consistency-check.class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.DataSetAndPathInfoDBConsistencyCheckProcessingPlugin + +# --------------------------------------------------------------------------- +# dropbox configurations +# --------------------------------------------------------------------------- +inputs = default-dropbox +dss-rpc.put-default = default-dropbox + +default-dropbox.incoming-dir = ${incoming-root-dir}/incoming-default +default-dropbox.incoming-data-completeness-condition = auto-detection +default-dropbox.top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2 +default-dropbox.program-class = ch.systemsx.cisd.etlserver.registrator.DefaultDropbox +default-dropbox.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +default-dropbox.validation-script-path = ../core-plugins/default/default-validation-script.py + +# --------------------------------------------------------------------------- +# Archiver configuration (optional) +# --------------------------------------------------------------------------- + +# Configuration of an archiver task. All properties are prefixed with 'archiver.'. + +# Archiver class specification (together with the list of packages this class belongs to). +#archiver.class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.demo.DemoArchiver + +# --------------------------------------------------------------------------- +# Imaging database for screening (optional, only used if screening technology switched on) +# --------------------------------------------------------------------------- +# Format: <host>[:<port>]. Default: localhost +# imaging-database.url-host-part = +# Default: prod. +imaging-database.kind = test_js_common + + +# --------------------------------------------------------------------------- +# INTERNAL CONFIGURATION, +# Do not change this part unless you are developing openBIS extensions. +# --------------------------------------------------------------------------- + diff --git a/js-test/servers/common/datastore_server/log-registrations/failed/.gitignore b/js-test/servers/common/datastore_server/log-registrations/failed/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/js-test/servers/common/datastore_server/log-registrations/in-process/.gitignore b/js-test/servers/common/datastore_server/log-registrations/in-process/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git 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0000000000000000000000000000000000000000..ee1cb2255596d4f605dafd572ec4b6921dc51b13 --- /dev/null +++ b/js-test/servers/common/datastore_server2/data/dropboxes/simple-dropbox.py @@ -0,0 +1,15 @@ +#! /usr/bin/env python +transaction = service.transaction() + +expid = "/TEST/TEST-PROJECT/DEMO-EXP-SIMPLE" +exp = transaction.getExperiment(expid) + +if None == exp: + exp = transaction.createNewExperiment(expid, "SIRNA_HCS") + exp.setPropertyValue("DESCRIPTION", "Description of the demo experiment") + +dataSet = transaction.createNewDataSet() + +dataSet.setDataSetType("UNKNOWN") +dataSet.setExperiment(exp) +transaction.moveFile(incoming.getAbsolutePath(), dataSet) diff --git a/js-test/servers/common/datastore_server2/data/incoming-default/.gitignore b/js-test/servers/common/datastore_server2/data/incoming-default/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git 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a/js-test/servers/common/datastore_server2/db/imaging_test_js_common2.sql b/js-test/servers/common/datastore_server2/db/imaging_test_js_common2.sql new file mode 100644 index 0000000000000000000000000000000000000000..1794abda12e01e0c7900cba29cc64a8b917f7f57 --- /dev/null +++ b/js-test/servers/common/datastore_server2/db/imaging_test_js_common2.sql @@ -0,0 +1,1713 @@ +-- +-- PostgreSQL database dump +-- + +SET statement_timeout = 0; +SET client_encoding = 'UTF8'; +SET standard_conforming_strings = on; +SET check_function_bodies = false; +SET client_min_messages = warning; + +-- +-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: - +-- + +CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog; + + +-- +-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: - +-- + +COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language'; + + +SET search_path = public, pg_catalog; + +-- +-- Name: boolean_char; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN boolean_char AS boolean DEFAULT false; + + +-- +-- Name: channel_color; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN channel_color AS character varying(20) + CONSTRAINT channel_color_check CHECK (((VALUE)::text = ANY (ARRAY[('BLUE'::character varying)::text, ('GREEN'::character varying)::text, ('RED'::character varying)::text, ('RED_GREEN'::character varying)::text, ('RED_BLUE'::character varying)::text, ('GREEN_BLUE'::character varying)::text]))); + + +-- +-- Name: code; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN code AS character varying(40); + + +-- +-- Name: color_component; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN color_component AS character varying(40) + CONSTRAINT color_component_check CHECK (((VALUE)::text = ANY (ARRAY[('RED'::character varying)::text, ('GREEN'::character varying)::text, ('BLUE'::character varying)::text]))); + + +-- +-- Name: description; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN description AS character varying(200); + + +-- +-- Name: file_path; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN file_path AS character varying(1000); + + +-- +-- Name: long_name; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN long_name AS text; + + +-- +-- Name: tech_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN tech_id AS bigint; + + +-- +-- Name: channel_stacks_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION channel_stacks_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_cont_id CODE; +BEGIN + + select cont_id into v_cont_id from image_data_sets where id = NEW.ds_id; + + -- Check that if there is no spot than there is no dataset container as well + if v_cont_id IS NULL then + if NEW.spot_id IS NOT NULL then + RAISE EXCEPTION 'Insert/Update of CHANNEL_STACKS failed, as the dataset container is not set, but spot is (spot id = %).',NEW.spot_id; + end if; + else + if NEW.spot_id IS NULL then + RAISE EXCEPTION 'Insert/Update of CHANNEL_STACKS failed, as the dataset container is set (id = %), but spot is not set.',v_cont_id; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: delete_empty_acquired_images(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION delete_empty_acquired_images() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + delete from acquired_images where id = OLD.id; + RETURN NEW; +END; +$$; + + +-- +-- Name: delete_unused_images(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION delete_unused_images() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + delete from images where id = OLD.img_id or id = OLD.thumbnail_id; + RETURN NEW; +END; +$$; + + +-- +-- Name: delete_unused_nulled_images(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION delete_unused_nulled_images() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + if NEW.img_id IS NULL then + if OLD.img_id IS NOT NULL then + delete from images where id = OLD.img_id; + end if; + end if; + if NEW.thumbnail_id IS NULL then + if OLD.thumbnail_id IS NOT NULL then + delete from images where id = OLD.thumbnail_id; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: image_transformations_default_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION image_transformations_default_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_is_default boolean; +BEGIN + if NEW.is_default = 'T' then + select is_default into v_is_default from IMAGE_TRANSFORMATIONS + where is_default = 'T' + and channel_id = NEW.channel_id + and id != NEW.id; + if v_is_default is NOT NULL then + RAISE EXCEPTION 'Insert/Update of image transformation (Code: %) failed, as the new record has is_default set to true and there is already a default record defined.', NEW.code; + end if; + end if; + + RETURN NEW; +END; +$$; + + +SET default_tablespace = ''; + +SET default_with_oids = false; + +-- +-- Name: acquired_images; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE acquired_images ( + id bigint NOT NULL, + img_id tech_id, + thumbnail_id tech_id, + image_transformer_factory bytea, + channel_stack_id tech_id NOT NULL, + channel_id tech_id NOT NULL +); + + +-- +-- Name: acquired_images_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE acquired_images_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: acquired_images_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE acquired_images_id_seq OWNED BY acquired_images.id; + + +-- +-- Name: acquired_images_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('acquired_images_id_seq', 30, true); + + +-- +-- Name: analysis_data_sets; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE analysis_data_sets ( + id bigint NOT NULL, + perm_id code NOT NULL, + cont_id tech_id +); + + +-- +-- Name: analysis_data_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE analysis_data_sets_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: analysis_data_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE analysis_data_sets_id_seq OWNED BY analysis_data_sets.id; + + +-- +-- Name: analysis_data_sets_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('analysis_data_sets_id_seq', 1, false); + + +-- +-- Name: channel_stacks; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE channel_stacks ( + id bigint NOT NULL, + x integer, + y integer, + z_in_m real, + t_in_sec real, + series_number integer, + is_representative boolean_char DEFAULT false NOT NULL, + ds_id tech_id NOT NULL, + spot_id tech_id +); + + +-- +-- Name: channel_stacks_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE channel_stacks_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: channel_stacks_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE channel_stacks_id_seq OWNED BY channel_stacks.id; + + +-- +-- Name: channel_stacks_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('channel_stacks_id_seq', 30, true); + + +-- +-- Name: channels; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE channels ( + id bigint NOT NULL, + code long_name NOT NULL, + label long_name NOT NULL, + description description, + wavelength integer, + red_cc integer NOT NULL, + green_cc integer NOT NULL, + blue_cc integer NOT NULL, + ds_id tech_id, + exp_id tech_id, + CONSTRAINT channels_ds_exp_arc_ck CHECK ((((ds_id IS NOT NULL) AND (exp_id IS NULL)) OR ((ds_id IS NULL) AND (exp_id IS NOT NULL)))) +); + + +-- +-- Name: channels_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE channels_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: channels_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE channels_id_seq OWNED BY channels.id; + + +-- +-- Name: channels_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('channels_id_seq', 1, true); + + +-- +-- Name: containers; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE containers ( + id bigint NOT NULL, + perm_id code NOT NULL, + spots_width integer, + spots_height integer, + expe_id tech_id NOT NULL +); + + +-- +-- Name: containers_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE containers_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: containers_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE containers_id_seq OWNED BY containers.id; + + +-- +-- Name: containers_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('containers_id_seq', 1, false); + + +-- +-- Name: database_version_logs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE database_version_logs ( + db_version character varying(4) NOT NULL, + module_name character varying(250), + run_status character varying(10), + run_status_timestamp timestamp without time zone, + module_code bytea, + run_exception bytea +); + + +-- +-- Name: events; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE events ( + last_seen_deletion_event_id tech_id NOT NULL +); + + +-- +-- Name: experiments; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiments ( + id bigint NOT NULL, + perm_id code NOT NULL, + image_transformer_factory bytea +); + + +-- +-- Name: experiments_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiments_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiments_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE experiments_id_seq OWNED BY experiments.id; + + +-- +-- Name: experiments_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiments_id_seq', 1, false); + + +-- +-- Name: feature_defs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE feature_defs ( + id bigint NOT NULL, + code long_name NOT NULL, + label long_name NOT NULL, + description description, + ds_id tech_id NOT NULL +); + + +-- +-- Name: feature_defs_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE feature_defs_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: feature_defs_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE feature_defs_id_seq OWNED BY feature_defs.id; + + +-- +-- Name: feature_defs_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('feature_defs_id_seq', 1, false); + + +-- +-- Name: feature_values; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE feature_values ( + id bigint NOT NULL, + z_in_m real, + t_in_sec real, + "values" bytea NOT NULL, + fd_id tech_id NOT NULL +); + + +-- +-- Name: feature_values_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE feature_values_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: feature_values_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE feature_values_id_seq OWNED BY feature_values.id; + + +-- +-- Name: feature_values_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('feature_values_id_seq', 1, false); + + +-- +-- Name: feature_vocabulary_terms; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE feature_vocabulary_terms ( + id bigint NOT NULL, + code long_name NOT NULL, + sequence_number integer NOT NULL, + fd_id tech_id NOT NULL +); + + +-- +-- Name: feature_vocabulary_terms_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE feature_vocabulary_terms_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: feature_vocabulary_terms_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE feature_vocabulary_terms_id_seq OWNED BY feature_vocabulary_terms.id; + + +-- +-- Name: feature_vocabulary_terms_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('feature_vocabulary_terms_id_seq', 1, false); + + +-- +-- Name: image_data_sets; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_data_sets ( + id bigint NOT NULL, + perm_id code NOT NULL, + fields_width integer, + fields_height integer, + image_transformer_factory bytea, + is_multidimensional boolean_char NOT NULL, + image_library_name long_name, + image_library_reader_name long_name, + cont_id tech_id +); + + +-- +-- Name: image_data_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_data_sets_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_data_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_data_sets_id_seq OWNED BY image_data_sets.id; + + +-- +-- Name: image_data_sets_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_data_sets_id_seq', 1, true); + + +-- +-- Name: image_transformations; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_transformations ( + id bigint NOT NULL, + code long_name NOT NULL, + label long_name NOT NULL, + description character varying(1000), + image_transformer_factory bytea NOT NULL, + is_editable boolean_char NOT NULL, + is_default boolean_char DEFAULT false NOT NULL, + channel_id tech_id NOT NULL +); + + +-- +-- Name: image_transformations_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_transformations_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_transformations_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_transformations_id_seq OWNED BY image_transformations.id; + + +-- +-- Name: image_transformations_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_transformations_id_seq', 1, false); + + +-- +-- Name: image_zoom_level_transformations; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_zoom_level_transformations ( + id bigint NOT NULL, + zoom_level_id tech_id NOT NULL, + channel_id tech_id NOT NULL, + image_transformation_id tech_id NOT NULL +); + + +-- +-- Name: image_zoom_level_transformations_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_zoom_level_transformations_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_zoom_level_transformations_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_zoom_level_transformations_id_seq OWNED BY image_zoom_level_transformations.id; + + +-- +-- Name: image_zoom_level_transformations_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_zoom_level_transformations_id_seq', 1, false); + + +-- +-- Name: image_zoom_levels; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE image_zoom_levels ( + id bigint NOT NULL, + is_original boolean_char NOT NULL, + container_dataset_id tech_id NOT NULL, + physical_dataset_perm_id text NOT NULL, + path file_path, + width integer, + height integer, + color_depth integer, + file_type character varying(20) +); + + +-- +-- Name: image_zoom_levels_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE image_zoom_levels_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: image_zoom_levels_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE image_zoom_levels_id_seq OWNED BY image_zoom_levels.id; + + +-- +-- Name: image_zoom_levels_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('image_zoom_levels_id_seq', 2, true); + + +-- +-- Name: images; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE images ( + id bigint NOT NULL, + path file_path NOT NULL, + image_id code, + color color_component +); + + +-- +-- Name: images_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE images_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: images_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE images_id_seq OWNED BY images.id; + + +-- +-- Name: images_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('images_id_seq', 60, true); + + +-- +-- Name: spots; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE spots ( + id bigint NOT NULL, + x integer, + y integer, + cont_id tech_id NOT NULL +); + + +-- +-- Name: spots_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE spots_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: spots_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE spots_id_seq OWNED BY spots.id; + + +-- +-- Name: spots_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('spots_id_seq', 1, false); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE acquired_images ALTER COLUMN id SET DEFAULT nextval('acquired_images_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE analysis_data_sets ALTER COLUMN id SET DEFAULT nextval('analysis_data_sets_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE channel_stacks ALTER COLUMN id SET DEFAULT nextval('channel_stacks_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE channels ALTER COLUMN id SET DEFAULT nextval('channels_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE containers ALTER COLUMN id SET DEFAULT nextval('containers_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE experiments ALTER COLUMN id SET DEFAULT nextval('experiments_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE feature_defs ALTER COLUMN id SET DEFAULT nextval('feature_defs_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE feature_values ALTER COLUMN id SET DEFAULT nextval('feature_values_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE feature_vocabulary_terms ALTER COLUMN id SET DEFAULT nextval('feature_vocabulary_terms_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_data_sets ALTER COLUMN id SET DEFAULT nextval('image_data_sets_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_transformations ALTER COLUMN id SET DEFAULT nextval('image_transformations_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_zoom_level_transformations ALTER COLUMN id SET DEFAULT nextval('image_zoom_level_transformations_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE image_zoom_levels ALTER COLUMN id SET DEFAULT nextval('image_zoom_levels_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE images ALTER COLUMN id SET DEFAULT nextval('images_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE spots ALTER COLUMN id SET DEFAULT nextval('spots_id_seq'::regclass); + + +-- +-- Data for Name: acquired_images; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY acquired_images (id, img_id, thumbnail_id, image_transformer_factory, channel_stack_id, channel_id) FROM stdin; +1 1 2 \N 1 1 +2 3 4 \N 2 1 +3 5 6 \N 3 1 +4 7 8 \N 4 1 +5 9 10 \N 5 1 +6 11 12 \N 6 1 +7 13 14 \N 7 1 +8 15 16 \N 8 1 +9 17 18 \N 9 1 +10 19 20 \N 10 1 +11 21 22 \N 11 1 +12 23 24 \N 12 1 +13 25 26 \N 13 1 +14 27 28 \N 14 1 +15 29 30 \N 15 1 +16 31 32 \N 16 1 +17 33 34 \N 17 1 +18 35 36 \N 18 1 +19 37 38 \N 19 1 +20 39 40 \N 20 1 +21 41 42 \N 21 1 +22 43 44 \N 22 1 +23 45 46 \N 23 1 +24 47 48 \N 24 1 +25 49 50 \N 25 1 +26 51 52 \N 26 1 +27 53 54 \N 27 1 +28 55 56 \N 28 1 +29 57 58 \N 29 1 +30 59 60 \N 30 1 +\. + + +-- +-- Data for Name: analysis_data_sets; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY analysis_data_sets (id, perm_id, cont_id) FROM stdin; +\. + + +-- +-- Data for Name: channel_stacks; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY channel_stacks (id, x, y, z_in_m, t_in_sec, series_number, is_representative, ds_id, spot_id) FROM stdin; +1 1 1 0 9 \N f 1 \N +2 1 1 0 7 \N f 1 \N +3 1 1 3 2 \N f 1 \N +4 1 1 6 0 \N f 1 \N +5 1 1 6 3 \N f 1 \N +6 1 1 6 8 \N f 1 \N +7 1 1 6 9 \N f 1 \N +8 1 1 0 1 \N f 1 \N +9 1 1 3 0 \N f 1 \N +10 1 1 0 5 \N f 1 \N +11 1 1 6 2 \N f 1 \N +12 1 1 0 8 \N f 1 \N +13 1 1 3 7 \N f 1 \N +14 1 1 6 5 \N f 1 \N +15 1 1 0 4 \N f 1 \N +16 1 1 3 9 \N f 1 \N +17 1 1 3 1 \N f 1 \N +18 1 1 6 7 \N f 1 \N +19 1 1 3 3 \N f 1 \N +20 1 1 0 2 \N f 1 \N +21 1 1 3 5 \N f 1 \N +22 1 1 6 1 \N f 1 \N +23 1 1 3 8 \N f 1 \N +24 1 1 0 0 \N t 1 \N +25 1 1 6 4 \N f 1 \N +26 1 1 3 6 \N f 1 \N +27 1 1 6 6 \N f 1 \N +28 1 1 3 4 \N f 1 \N +29 1 1 0 3 \N f 1 \N +30 1 1 0 6 \N f 1 \N +\. + + +-- +-- Data for Name: channels; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY channels (id, code, label, description, wavelength, red_cc, green_cc, blue_cc, ds_id, exp_id) FROM stdin; +1 RGB RGB \N \N 0 0 255 1 \N +\. + + +-- +-- Data for Name: containers; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY containers (id, perm_id, spots_width, spots_height, expe_id) FROM stdin; +\. + + +-- +-- Data for Name: database_version_logs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY database_version_logs (db_version, module_name, run_status, run_status_timestamp, module_code, run_exception) FROM stdin; +023 sql/imaging/postgresql/023/schema-023.sql SUCCESS 2013-04-16 17:30:26.145 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\N +\. + + +-- +-- Data for Name: events; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY events (last_seen_deletion_event_id) FROM stdin; +175 +\. + + +-- +-- Data for Name: experiments; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiments (id, perm_id, image_transformer_factory) FROM stdin; +\. + + +-- +-- Data for Name: feature_defs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY feature_defs (id, code, label, description, ds_id) FROM stdin; +\. + + +-- +-- Data for Name: feature_values; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY feature_values (id, z_in_m, t_in_sec, "values", fd_id) FROM stdin; +\. + + +-- +-- Data for Name: feature_vocabulary_terms; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY feature_vocabulary_terms (id, code, sequence_number, fd_id) FROM stdin; +\. + + +-- +-- Data for Name: image_data_sets; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_data_sets (id, perm_id, fields_width, fields_height, image_transformer_factory, is_multidimensional, image_library_name, image_library_reader_name, cont_id) FROM stdin; +1 20130417094937144-429 1 1 \N t \N \N \N +\. + + +-- +-- Data for Name: image_transformations; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_transformations (id, code, label, description, image_transformer_factory, is_editable, is_default, channel_id) FROM stdin; +\. + + +-- +-- Data for Name: image_zoom_level_transformations; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_zoom_level_transformations (id, zoom_level_id, channel_id, image_transformation_id) FROM stdin; +\. + + +-- +-- Data for Name: image_zoom_levels; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY image_zoom_levels (id, is_original, container_dataset_id, physical_dataset_perm_id, path, width, height, color_depth, file_type) FROM stdin; +1 t 1 20130417094936021-428 512 512 32 \N +2 f 1 20130417094934693-427 thumbnails_128x128.h5ar 128 128 32 png +\. + + +-- +-- Data for Name: images; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY images (id, path, image_id, color) FROM stdin; +1 original/SERIES-1/bPLATE_w_s1_z0_t9_cRGB.png \N \N +2 d1-1_t9.0_h0.0_cRGB \N \N +3 original/SERIES-1/bPLATE_w_s1_z0_t7_cRGB.png \N \N +4 d1-1_t7.0_h0.0_cRGB \N \N +5 original/SERIES-1/bPLATE_w_s1_z3_t2_cRGB.png \N \N +6 d1-1_t2.0_h3.0_cRGB \N \N +7 original/SERIES-1/bPLATE_w_s1_z6_t0_cRGB.png \N \N +8 d1-1_t0.0_h6.0_cRGB \N \N +9 original/SERIES-1/bPLATE_w_s1_z6_t3_cRGB.png \N \N +10 d1-1_t3.0_h6.0_cRGB \N \N +11 original/SERIES-1/bPLATE_w_s1_z6_t8_cRGB.png \N \N +12 d1-1_t8.0_h6.0_cRGB \N \N +13 original/SERIES-1/bPLATE_w_s1_z6_t9_cRGB.png \N \N +14 d1-1_t9.0_h6.0_cRGB \N \N +15 original/SERIES-1/bPLATE_w_s1_z0_t1_cRGB.png \N \N +16 d1-1_t1.0_h0.0_cRGB \N \N +17 original/SERIES-1/bPLATE_w_s1_z3_t0_cRGB.png \N \N +18 d1-1_t0.0_h3.0_cRGB \N \N +19 original/SERIES-1/bPLATE_w_s1_z0_t5_cRGB.png \N \N +20 d1-1_t5.0_h0.0_cRGB \N \N +21 original/SERIES-1/bPLATE_w_s1_z6_t2_cRGB.png \N \N +22 d1-1_t2.0_h6.0_cRGB \N \N +23 original/SERIES-1/bPLATE_w_s1_z0_t8_cRGB.png \N \N +24 d1-1_t8.0_h0.0_cRGB \N \N +25 original/SERIES-1/bPLATE_w_s1_z3_t7_cRGB.png \N \N +26 d1-1_t7.0_h3.0_cRGB \N \N +27 original/SERIES-1/bPLATE_w_s1_z6_t5_cRGB.png \N \N +28 d1-1_t5.0_h6.0_cRGB \N \N +29 original/SERIES-1/bPLATE_w_s1_z0_t4_cRGB.png \N \N +30 d1-1_t4.0_h0.0_cRGB \N \N +31 original/SERIES-1/bPLATE_w_s1_z3_t9_cRGB.png \N \N +32 d1-1_t9.0_h3.0_cRGB \N \N +33 original/SERIES-1/bPLATE_w_s1_z3_t1_cRGB.png \N \N +34 d1-1_t1.0_h3.0_cRGB \N \N +35 original/SERIES-1/bPLATE_w_s1_z6_t7_cRGB.png \N \N +36 d1-1_t7.0_h6.0_cRGB \N \N +37 original/SERIES-1/bPLATE_w_s1_z3_t3_cRGB.png \N \N +38 d1-1_t3.0_h3.0_cRGB \N \N +39 original/SERIES-1/bPLATE_w_s1_z0_t2_cRGB.png \N \N +40 d1-1_t2.0_h0.0_cRGB \N \N +41 original/SERIES-1/bPLATE_w_s1_z3_t5_cRGB.png \N \N +42 d1-1_t5.0_h3.0_cRGB \N \N +43 original/SERIES-1/bPLATE_w_s1_z6_t1_cRGB.png \N \N +44 d1-1_t1.0_h6.0_cRGB \N \N +45 original/SERIES-1/bPLATE_w_s1_z3_t8_cRGB.png \N \N +46 d1-1_t8.0_h3.0_cRGB \N \N +47 original/SERIES-1/bPLATE_w_s1_z0_t0_cRGB.png \N \N +48 d1-1_t0.0_h0.0_cRGB \N \N +49 original/SERIES-1/bPLATE_w_s1_z6_t4_cRGB.png \N \N +50 d1-1_t4.0_h6.0_cRGB \N \N +51 original/SERIES-1/bPLATE_w_s1_z3_t6_cRGB.png \N \N +52 d1-1_t6.0_h3.0_cRGB \N \N +53 original/SERIES-1/bPLATE_w_s1_z6_t6_cRGB.png \N \N +54 d1-1_t6.0_h6.0_cRGB \N \N +55 original/SERIES-1/bPLATE_w_s1_z3_t4_cRGB.png \N \N +56 d1-1_t4.0_h3.0_cRGB \N \N +57 original/SERIES-1/bPLATE_w_s1_z0_t3_cRGB.png \N \N +58 d1-1_t3.0_h0.0_cRGB \N \N +59 original/SERIES-1/bPLATE_w_s1_z0_t6_cRGB.png \N \N +60 d1-1_t6.0_h0.0_cRGB \N \N +\. + + +-- +-- Data for Name: spots; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY spots (id, x, y, cont_id) FROM stdin; +\. + + +-- +-- Name: acquired_images_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT acquired_images_pkey PRIMARY KEY (id); + + +-- +-- Name: analysis_data_sets_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY analysis_data_sets + ADD CONSTRAINT analysis_data_sets_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: analysis_data_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY analysis_data_sets + ADD CONSTRAINT analysis_data_sets_pkey PRIMARY KEY (id); + + +-- +-- Name: channel_stacks_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channel_stacks + ADD CONSTRAINT channel_stacks_pkey PRIMARY KEY (id); + + +-- +-- Name: channels_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT channels_pkey PRIMARY KEY (id); + + +-- +-- Name: channels_uk_1; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT channels_uk_1 UNIQUE (code, ds_id); + + +-- +-- Name: channels_uk_2; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT channels_uk_2 UNIQUE (code, exp_id); + + +-- +-- Name: containers_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY containers + ADD CONSTRAINT containers_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: containers_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY containers + ADD CONSTRAINT containers_pkey PRIMARY KEY (id); + + +-- +-- Name: experiments_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments + ADD CONSTRAINT experiments_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: experiments_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments + ADD CONSTRAINT experiments_pkey PRIMARY KEY (id); + + +-- +-- Name: feature_defs_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_defs + ADD CONSTRAINT feature_defs_pkey PRIMARY KEY (id); + + +-- +-- Name: feature_defs_uk_1; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_defs + ADD CONSTRAINT feature_defs_uk_1 UNIQUE (code, ds_id); + + +-- +-- Name: feature_values_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_values + ADD CONSTRAINT feature_values_pkey PRIMARY KEY (id); + + +-- +-- Name: feature_vocabulary_terms_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY feature_vocabulary_terms + ADD CONSTRAINT feature_vocabulary_terms_pkey PRIMARY KEY (id); + + +-- +-- Name: image_data_sets_perm_id_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_data_sets + ADD CONSTRAINT image_data_sets_perm_id_key UNIQUE (perm_id); + + +-- +-- Name: image_data_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_data_sets + ADD CONSTRAINT image_data_sets_pkey PRIMARY KEY (id); + + +-- +-- Name: image_transformations_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_transformations + ADD CONSTRAINT image_transformations_pkey PRIMARY KEY (id); + + +-- +-- Name: image_transformations_uk_1; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_transformations + ADD CONSTRAINT image_transformations_uk_1 UNIQUE (code, channel_id); + + +-- +-- Name: image_zoom_level_transformations_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_zoom_level_transformations + ADD CONSTRAINT image_zoom_level_transformations_pkey PRIMARY KEY (id); + + +-- +-- Name: image_zoom_levels_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY image_zoom_levels + ADD CONSTRAINT image_zoom_levels_pkey PRIMARY KEY (id); + + +-- +-- Name: images_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY images + ADD CONSTRAINT images_pkey PRIMARY KEY (id); + + +-- +-- Name: spots_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY spots + ADD CONSTRAINT spots_pkey PRIMARY KEY (id); + + +-- +-- Name: analysis_data_sets_cont_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX analysis_data_sets_cont_idx ON analysis_data_sets USING btree (cont_id); + + +-- +-- Name: channel_stacks_dim_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channel_stacks_dim_idx ON channel_stacks USING btree (x, y, z_in_m, t_in_sec); + + +-- +-- Name: channel_stacks_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channel_stacks_ds_idx ON channel_stacks USING btree (ds_id); + + +-- +-- Name: channel_stacks_spot_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channel_stacks_spot_idx ON channel_stacks USING btree (spot_id); + + +-- +-- Name: channels_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX channels_ds_idx ON channels USING btree (ds_id); + + +-- +-- Name: containers_expe_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX containers_expe_idx ON containers USING btree (expe_id); + + +-- +-- Name: feature_defs_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_defs_ds_idx ON feature_defs USING btree (ds_id); + + +-- +-- Name: feature_values_fd_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_values_fd_idx ON feature_values USING btree (fd_id); + + +-- +-- Name: feature_values_z_and_t_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_values_z_and_t_idx ON feature_values USING btree (z_in_m, t_in_sec); + + +-- +-- Name: feature_vocabulary_terms_fd_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX feature_vocabulary_terms_fd_idx ON feature_vocabulary_terms USING btree (fd_id); + + +-- +-- Name: image_data_sets_cont_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_data_sets_cont_idx ON image_data_sets USING btree (cont_id); + + +-- +-- Name: image_transformations_channels_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_transformations_channels_idx ON image_transformations USING btree (channel_id); + + +-- +-- Name: image_zoom_level_transformations_zlid_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_zoom_level_transformations_zlid_idx ON image_zoom_level_transformations USING btree (zoom_level_id); + + +-- +-- Name: image_zoom_levels_cont_fk_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_zoom_levels_cont_fk_idx ON image_zoom_levels USING btree (container_dataset_id); + + +-- +-- Name: image_zoom_levels_phys_ds_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX image_zoom_levels_phys_ds_idx ON image_zoom_levels USING btree (physical_dataset_perm_id); + + +-- +-- Name: images_channel_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_channel_idx ON acquired_images USING btree (channel_id); + + +-- +-- Name: images_channel_stack_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_channel_stack_idx ON acquired_images USING btree (channel_stack_id); + + +-- +-- Name: images_img_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_img_idx ON acquired_images USING btree (img_id); + + +-- +-- Name: images_thumbnail_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX images_thumbnail_idx ON acquired_images USING btree (thumbnail_id); + + +-- +-- Name: spots_cont_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX spots_cont_idx ON spots USING btree (cont_id); + + +-- +-- Name: spots_coords_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX spots_coords_idx ON spots USING btree (cont_id, x, y); + + +-- +-- Name: channel_stacks_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER channel_stacks_check BEFORE INSERT OR UPDATE ON channel_stacks FOR EACH ROW EXECUTE PROCEDURE channel_stacks_check(); + + +-- +-- Name: empty_acquired_images; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER empty_acquired_images BEFORE UPDATE ON acquired_images FOR EACH ROW WHEN (((new.img_id IS NULL) AND (new.thumbnail_id IS NULL))) EXECUTE PROCEDURE delete_empty_acquired_images(); + + +-- +-- Name: image_transformations_default_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER image_transformations_default_check BEFORE INSERT OR UPDATE ON image_transformations FOR EACH ROW EXECUTE PROCEDURE image_transformations_default_check(); + + +-- +-- Name: unused_images; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER unused_images AFTER DELETE ON acquired_images FOR EACH ROW EXECUTE PROCEDURE delete_unused_images(); + + +-- +-- Name: unused_nulled_images; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER unused_nulled_images AFTER UPDATE ON acquired_images FOR EACH ROW EXECUTE PROCEDURE delete_unused_nulled_images(); + + +-- +-- Name: fk_analysis_data_set_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY analysis_data_sets + ADD CONSTRAINT fk_analysis_data_set_1 FOREIGN KEY (cont_id) REFERENCES containers(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channel_stacks_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channel_stacks + ADD CONSTRAINT fk_channel_stacks_1 FOREIGN KEY (spot_id) REFERENCES spots(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channel_stacks_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channel_stacks + ADD CONSTRAINT fk_channel_stacks_2 FOREIGN KEY (ds_id) REFERENCES image_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channels_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT fk_channels_1 FOREIGN KEY (ds_id) REFERENCES image_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_channels_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY channels + ADD CONSTRAINT fk_channels_2 FOREIGN KEY (exp_id) REFERENCES experiments(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_feature_defs_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY feature_defs + ADD CONSTRAINT fk_feature_defs_1 FOREIGN KEY (ds_id) REFERENCES analysis_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_feature_values_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY feature_values + ADD CONSTRAINT fk_feature_values_1 FOREIGN KEY (fd_id) REFERENCES feature_defs(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_feature_vocabulary_terms_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY feature_vocabulary_terms + ADD CONSTRAINT fk_feature_vocabulary_terms_1 FOREIGN KEY (fd_id) REFERENCES feature_defs(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_data_set_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_data_sets + ADD CONSTRAINT fk_image_data_set_1 FOREIGN KEY (cont_id) REFERENCES containers(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_transformations_channel; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_transformations + ADD CONSTRAINT fk_image_transformations_channel FOREIGN KEY (channel_id) REFERENCES channels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_zoom_level_transformations_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_zoom_level_transformations + ADD CONSTRAINT fk_image_zoom_level_transformations_1 FOREIGN KEY (zoom_level_id) REFERENCES image_zoom_levels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_zoom_level_transformations_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_zoom_level_transformations + ADD CONSTRAINT fk_image_zoom_level_transformations_2 FOREIGN KEY (channel_id) REFERENCES channels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_image_zoom_levels_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY image_zoom_levels + ADD CONSTRAINT fk_image_zoom_levels_1 FOREIGN KEY (container_dataset_id) REFERENCES image_data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_images_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_1 FOREIGN KEY (channel_stack_id) REFERENCES channel_stacks(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_images_2; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_2 FOREIGN KEY (channel_id) REFERENCES channels(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_images_3; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_3 FOREIGN KEY (img_id) REFERENCES images(id) ON UPDATE CASCADE ON DELETE SET NULL; + + +-- +-- Name: fk_images_4; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY acquired_images + ADD CONSTRAINT fk_images_4 FOREIGN KEY (thumbnail_id) REFERENCES images(id) ON UPDATE CASCADE ON DELETE SET NULL; + + +-- +-- Name: fk_sample_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY containers + ADD CONSTRAINT fk_sample_1 FOREIGN KEY (expe_id) REFERENCES experiments(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_spot_1; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY spots + ADD CONSTRAINT fk_spot_1 FOREIGN KEY (cont_id) REFERENCES containers(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: public; Type: ACL; Schema: -; Owner: - +-- + +REVOKE ALL ON SCHEMA public FROM PUBLIC; +REVOKE ALL ON SCHEMA public FROM postgres; +GRANT ALL ON SCHEMA public TO postgres; +GRANT ALL ON SCHEMA public TO PUBLIC; + + +-- +-- PostgreSQL database dump complete +-- + diff --git a/js-test/servers/common/datastore_server2/db/pathinfo_test_js_common2.sql b/js-test/servers/common/datastore_server2/db/pathinfo_test_js_common2.sql new file mode 100644 index 0000000000000000000000000000000000000000..b695da3d6bbf16b02a4ca6f92f2eb4e762cf7afe --- /dev/null +++ b/js-test/servers/common/datastore_server2/db/pathinfo_test_js_common2.sql @@ -0,0 +1,405 @@ +-- +-- PostgreSQL database dump +-- + +SET statement_timeout = 0; +SET client_encoding = 'UTF8'; +SET standard_conforming_strings = on; +SET check_function_bodies = false; +SET client_min_messages = warning; + +-- +-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: - +-- + +CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog; + + +-- +-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: - +-- + +COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language'; + + +SET search_path = public, pg_catalog; + +-- +-- Name: boolean_char; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN boolean_char AS boolean DEFAULT false; + + +-- +-- Name: code; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN code AS character varying(40); + + +-- +-- Name: file_path; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN file_path AS character varying(1000); + + +-- +-- Name: tech_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN tech_id AS bigint; + + +-- +-- Name: time_stamp; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN time_stamp AS timestamp with time zone; + + +SET default_tablespace = ''; + +SET default_with_oids = false; + +-- +-- Name: data_set_files; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_files ( + id bigint NOT NULL, + dase_id tech_id NOT NULL, + parent_id tech_id, + relative_path file_path NOT NULL, + file_name file_path NOT NULL, + size_in_bytes bigint NOT NULL, + checksum_crc32 integer, + is_directory boolean_char NOT NULL, + last_modified time_stamp DEFAULT now() NOT NULL +); + + +-- +-- Name: data_set_files_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_set_files_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_set_files_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE data_set_files_id_seq OWNED BY data_set_files.id; + + +-- +-- Name: data_set_files_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_set_files_id_seq', 142, true); + + +-- +-- Name: data_sets; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_sets ( + id bigint NOT NULL, + code code NOT NULL, + location file_path NOT NULL +); + + +-- +-- Name: data_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_sets_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: - +-- + +ALTER SEQUENCE data_sets_id_seq OWNED BY data_sets.id; + + +-- +-- Name: data_sets_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_sets_id_seq', 8, true); + + +-- +-- Name: database_version_logs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE database_version_logs ( + db_version character varying(4) NOT NULL, + module_name character varying(250), + run_status character varying(10), + run_status_timestamp timestamp without time zone, + module_code bytea, + run_exception bytea +); + + +-- +-- Name: events; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE events ( + last_seen_deletion_event_id tech_id NOT NULL +); + + +-- +-- Name: last_feeding_event; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE last_feeding_event ( + registration_timestamp time_stamp NOT NULL +); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE data_set_files ALTER COLUMN id SET DEFAULT nextval('data_set_files_id_seq'::regclass); + + +-- +-- Name: id; Type: DEFAULT; Schema: public; Owner: - +-- + +ALTER TABLE data_sets ALTER COLUMN id SET DEFAULT nextval('data_sets_id_seq'::regclass); + + +-- +-- Data for Name: data_set_files; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_files (id, dase_id, parent_id, relative_path, file_name, size_in_bytes, checksum_crc32, is_directory, last_modified) FROM stdin; +1 1 \N 20130415093804724-403 0 \N t 2013-04-15 09:38:06+02 +2 1 1 original original 0 \N t 2013-04-15 09:38:05+02 +3 1 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bPLATE_w_s1_z0_t1_cRGB.png 15745 -350472329 f 2013-04-12 15:43:21+02 +83 7 80 original/SERIES-1/bPLATE_w_s1_z0_t2_cRGB.png bPLATE_w_s1_z0_t2_cRGB.png 16572 -1535301365 f 2013-04-12 15:43:21+02 +84 7 80 original/SERIES-1/bPLATE_w_s1_z0_t3_cRGB.png bPLATE_w_s1_z0_t3_cRGB.png 16895 284878461 f 2013-04-12 15:43:22+02 +85 7 80 original/SERIES-1/bPLATE_w_s1_z0_t4_cRGB.png bPLATE_w_s1_z0_t4_cRGB.png 16130 531362498 f 2013-04-12 15:43:22+02 +86 7 80 original/SERIES-1/bPLATE_w_s1_z0_t5_cRGB.png bPLATE_w_s1_z0_t5_cRGB.png 16696 1092208703 f 2013-04-12 15:43:22+02 +87 7 80 original/SERIES-1/bPLATE_w_s1_z0_t6_cRGB.png bPLATE_w_s1_z0_t6_cRGB.png 17103 749130407 f 2013-04-12 15:43:22+02 +88 7 80 original/SERIES-1/bPLATE_w_s1_z0_t7_cRGB.png bPLATE_w_s1_z0_t7_cRGB.png 16253 1701746373 f 2013-04-12 15:43:22+02 +89 7 80 original/SERIES-1/bPLATE_w_s1_z0_t8_cRGB.png bPLATE_w_s1_z0_t8_cRGB.png 16940 -578269368 f 2013-04-12 15:43:22+02 +90 7 80 original/SERIES-1/bPLATE_w_s1_z0_t9_cRGB.png bPLATE_w_s1_z0_t9_cRGB.png 16912 90736323 f 2013-04-12 15:43:22+02 +91 7 80 original/SERIES-1/bPLATE_w_s1_z3_t0_cRGB.png bPLATE_w_s1_z3_t0_cRGB.png 16832 1035037583 f 2013-04-12 15:43:21+02 +92 7 80 original/SERIES-1/bPLATE_w_s1_z3_t1_cRGB.png bPLATE_w_s1_z3_t1_cRGB.png 15700 599152194 f 2013-04-12 15:43:21+02 +93 7 80 original/SERIES-1/bPLATE_w_s1_z3_t2_cRGB.png bPLATE_w_s1_z3_t2_cRGB.png 16657 -357270045 f 2013-04-12 15:43:21+02 +94 7 80 original/SERIES-1/bPLATE_w_s1_z3_t3_cRGB.png bPLATE_w_s1_z3_t3_cRGB.png 16962 1019908662 f 2013-04-12 15:43:22+02 +95 7 80 original/SERIES-1/bPLATE_w_s1_z3_t4_cRGB.png bPLATE_w_s1_z3_t4_cRGB.png 16107 1412385612 f 2013-04-12 15:43:22+02 +96 7 80 original/SERIES-1/bPLATE_w_s1_z3_t5_cRGB.png bPLATE_w_s1_z3_t5_cRGB.png 16807 1239258284 f 2013-04-12 15:43:22+02 +97 7 80 original/SERIES-1/bPLATE_w_s1_z3_t6_cRGB.png bPLATE_w_s1_z3_t6_cRGB.png 17200 -60900712 f 2013-04-12 15:43:22+02 +98 7 80 original/SERIES-1/bPLATE_w_s1_z3_t7_cRGB.png bPLATE_w_s1_z3_t7_cRGB.png 16280 213799880 f 2013-04-12 15:43:22+02 +99 7 80 original/SERIES-1/bPLATE_w_s1_z3_t8_cRGB.png bPLATE_w_s1_z3_t8_cRGB.png 17147 -1555737311 f 2013-04-12 15:43:22+02 +100 7 80 original/SERIES-1/bPLATE_w_s1_z3_t9_cRGB.png bPLATE_w_s1_z3_t9_cRGB.png 17051 1300193223 f 2013-04-12 15:43:22+02 +101 7 80 original/SERIES-1/bPLATE_w_s1_z6_t0_cRGB.png bPLATE_w_s1_z6_t0_cRGB.png 16976 -112188799 f 2013-04-12 15:43:21+02 +102 7 80 original/SERIES-1/bPLATE_w_s1_z6_t1_cRGB.png bPLATE_w_s1_z6_t1_cRGB.png 15970 1678263345 f 2013-04-12 15:43:21+02 +103 7 80 original/SERIES-1/bPLATE_w_s1_z6_t2_cRGB.png bPLATE_w_s1_z6_t2_cRGB.png 16825 -160511318 f 2013-04-12 15:43:22+02 +104 7 80 original/SERIES-1/bPLATE_w_s1_z6_t3_cRGB.png bPLATE_w_s1_z6_t3_cRGB.png 17279 1989273511 f 2013-04-12 15:43:22+02 +105 7 80 original/SERIES-1/bPLATE_w_s1_z6_t4_cRGB.png bPLATE_w_s1_z6_t4_cRGB.png 16332 -1689381472 f 2013-04-12 15:43:22+02 +106 7 80 original/SERIES-1/bPLATE_w_s1_z6_t5_cRGB.png bPLATE_w_s1_z6_t5_cRGB.png 17010 125352385 f 2013-04-12 15:43:22+02 +107 7 80 original/SERIES-1/bPLATE_w_s1_z6_t6_cRGB.png bPLATE_w_s1_z6_t6_cRGB.png 16068 -1823748446 f 2013-04-12 15:43:22+02 +108 7 80 original/SERIES-1/bPLATE_w_s1_z6_t7_cRGB.png bPLATE_w_s1_z6_t7_cRGB.png 16472 664186482 f 2013-04-12 15:43:22+02 +109 7 80 original/SERIES-1/bPLATE_w_s1_z6_t8_cRGB.png bPLATE_w_s1_z6_t8_cRGB.png 17424 441007330 f 2013-04-12 15:43:22+02 +110 7 80 original/SERIES-1/bPLATE_w_s1_z6_t9_cRGB.png bPLATE_w_s1_z6_t9_cRGB.png 17379 259679938 f 2013-04-12 15:43:22+02 +111 8 \N 20130417094934693-427 94433 \N t 2013-04-17 09:49:43+02 +112 8 111 thumbnails_128x128.h5ar thumbnails_128x128.h5ar 94433 \N t 2013-04-17 09:49:36+02 +113 8 112 thumbnails_128x128.h5ar/d1-1_t0.0_h0.0_cRGB.png d1-1_t0.0_h0.0_cRGB.png 3071 545079273 f 2013-04-17 09:49:35+02 +114 8 112 thumbnails_128x128.h5ar/d1-1_t0.0_h3.0_cRGB.png d1-1_t0.0_h3.0_cRGB.png 3170 -767496005 f 2013-04-17 09:49:35+02 +115 8 112 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thumbnails_128x128.h5ar/d1-1_t3.0_h3.0_cRGB.png d1-1_t3.0_h3.0_cRGB.png 3210 -881202459 f 2013-04-17 09:49:35+02 +124 8 112 thumbnails_128x128.h5ar/d1-1_t3.0_h6.0_cRGB.png d1-1_t3.0_h6.0_cRGB.png 3180 972454695 f 2013-04-17 09:49:35+02 +125 8 112 thumbnails_128x128.h5ar/d1-1_t4.0_h0.0_cRGB.png d1-1_t4.0_h0.0_cRGB.png 3016 51400674 f 2013-04-17 09:49:35+02 +126 8 112 thumbnails_128x128.h5ar/d1-1_t4.0_h3.0_cRGB.png d1-1_t4.0_h3.0_cRGB.png 3121 1348166183 f 2013-04-17 09:49:35+02 +127 8 112 thumbnails_128x128.h5ar/d1-1_t4.0_h6.0_cRGB.png d1-1_t4.0_h6.0_cRGB.png 3044 2075959991 f 2013-04-17 09:49:35+02 +128 8 112 thumbnails_128x128.h5ar/d1-1_t5.0_h0.0_cRGB.png d1-1_t5.0_h0.0_cRGB.png 3252 1924897907 f 2013-04-17 09:49:35+02 +129 8 112 thumbnails_128x128.h5ar/d1-1_t5.0_h3.0_cRGB.png d1-1_t5.0_h3.0_cRGB.png 3255 -1200609858 f 2013-04-17 09:49:35+02 +130 8 112 thumbnails_128x128.h5ar/d1-1_t5.0_h6.0_cRGB.png d1-1_t5.0_h6.0_cRGB.png 3241 -1341970646 f 2013-04-17 09:49:35+02 +131 8 112 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thumbnails_128x128.h5ar/d1-1_t8.0_h6.0_cRGB.png d1-1_t8.0_h6.0_cRGB.png 3256 -435332103 f 2013-04-17 09:49:35+02 +140 8 112 thumbnails_128x128.h5ar/d1-1_t9.0_h0.0_cRGB.png d1-1_t9.0_h0.0_cRGB.png 3184 1390666588 f 2013-04-17 09:49:35+02 +141 8 112 thumbnails_128x128.h5ar/d1-1_t9.0_h3.0_cRGB.png d1-1_t9.0_h3.0_cRGB.png 3126 1672782918 f 2013-04-17 09:49:35+02 +142 8 112 thumbnails_128x128.h5ar/d1-1_t9.0_h6.0_cRGB.png d1-1_t9.0_h6.0_cRGB.png 3278 -372050420 f 2013-04-17 09:49:36+02 +\. + + +-- +-- Data for Name: data_sets; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_sets (id, code, location) FROM stdin; +1 20130415093804724-403 1FD3FF61-1576-4908-AE3D-296E60B4CE06/06/e5/ad/20130415093804724-403 +2 20130415100158230-407 1FD3FF61-1576-4908-AE3D-296E60B4CE06/1c/84/72/20130415100158230-407 +3 20130415100238098-408 1FD3FF61-1576-4908-AE3D-296E60B4CE06/91/0a/10/20130415100238098-408 +4 20130415100308111-409 1FD3FF61-1576-4908-AE3D-296E60B4CE06/2f/7a/b9/20130415100308111-409 +7 20130417094936021-428 1FD3FF61-1576-4908-AE3D-296E60B4CE06/67/85/36/20130417094936021-428 +8 20130417094934693-427 1FD3FF61-1576-4908-AE3D-296E60B4CE06/cd/53/dc/20130417094934693-427 +\. + + +-- +-- Data for Name: database_version_logs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY database_version_logs (db_version, module_name, run_status, run_status_timestamp, module_code, run_exception) FROM stdin; +006 datastore_server/sql/postgresql/006/schema-006.sql SUCCESS 2013-04-12 16:44:00.278 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\N +\. + + +-- +-- Data for Name: events; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY events (last_seen_deletion_event_id) FROM stdin; +175 +\. + + +-- +-- Data for Name: last_feeding_event; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY last_feeding_event (registration_timestamp) FROM stdin; +\. + + +-- +-- Name: data_set_files_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_files + ADD CONSTRAINT data_set_files_pkey PRIMARY KEY (id); + + +-- +-- Name: data_sets_code_key; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_sets + ADD CONSTRAINT data_sets_code_key UNIQUE (code); + + +-- +-- Name: data_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_sets + ADD CONSTRAINT data_sets_pkey PRIMARY KEY (id); + + +-- +-- Name: data_set_files_dase_id_file_name_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_file_name_idx ON data_set_files USING btree (dase_id, file_name); + + +-- +-- Name: data_set_files_dase_id_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_idx ON data_set_files USING btree (dase_id); + + +-- +-- Name: data_set_files_dase_id_parent_id_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_parent_id_idx ON data_set_files USING btree (dase_id, parent_id); + + +-- +-- Name: data_set_files_dase_id_relative_path_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_set_files_dase_id_relative_path_idx ON data_set_files USING btree (dase_id, relative_path); + + +-- +-- Name: data_sets_code_idx; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_sets_code_idx ON data_sets USING btree (code); + + +-- +-- Name: fk_data_set_files_data_set_files; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_files + ADD CONSTRAINT fk_data_set_files_data_set_files FOREIGN KEY (parent_id) REFERENCES data_set_files(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: fk_data_set_files_data_sets; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_files + ADD CONSTRAINT fk_data_set_files_data_sets FOREIGN KEY (dase_id) REFERENCES data_sets(id) ON UPDATE CASCADE ON DELETE CASCADE; + + +-- +-- Name: public; Type: ACL; Schema: -; Owner: - +-- + +REVOKE ALL ON SCHEMA public FROM PUBLIC; +REVOKE ALL ON SCHEMA public FROM postgres; +GRANT ALL ON SCHEMA public TO postgres; +GRANT ALL ON SCHEMA public TO PUBLIC; + + +-- +-- PostgreSQL database dump complete +-- + diff --git a/js-test/servers/common/datastore_server2/etc/log.xml b/js-test/servers/common/datastore_server2/etc/log.xml new file mode 100644 index 0000000000000000000000000000000000000000..5cee0a68436a19a6c4ec4b14b580e6d9f75bf84f --- /dev/null +++ b/js-test/servers/common/datastore_server2/etc/log.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8" ?> +<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd"> + +<log4j:configuration xmlns:log4j='http://jakarta.apache.org/log4j/'> + + <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender"> + <layout class="org.apache.log4j.PatternLayout"> + <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/> + </layout> + </appender> + + <appender name="NULL" class="org.apache.log4j.varia.NullAppender" /> + + <root> + <priority value ="info" /> + <appender-ref ref="STDOUT" /> + </root> + +</log4j:configuration> diff --git a/js-test/servers/common/datastore_server2/etc/openBIS.keystore b/js-test/servers/common/datastore_server2/etc/openBIS.keystore new file mode 100644 index 0000000000000000000000000000000000000000..776d15ff5354656cb250ea54cd9134af48feaa93 Binary files /dev/null and b/js-test/servers/common/datastore_server2/etc/openBIS.keystore differ diff --git a/js-test/servers/common/datastore_server2/etc/service.properties b/js-test/servers/common/datastore_server2/etc/service.properties new file mode 100644 index 0000000000000000000000000000000000000000..5597ad13ff9ad4c20dcb3a4204f19158c0844528 --- /dev/null +++ b/js-test/servers/common/datastore_server2/etc/service.properties @@ -0,0 +1,170 @@ +# Unique code of this Data Store Server. Not more than 40 characters. +data-store-server-code = DSS2 + +# host name of the machine on which the datastore server is running +host-address = http://localhost + +# parent directory of the store directory and all the dropboxes +root-dir = data + +# The root directory of the data store +storeroot-dir = ${root-dir}/store + +incoming-root-dir = ${root-dir} + +# Cache for data set files from other Data Store Servers +cache-workspace-folder = ${root-dir}/dss-cache + +# The directory where the command queue file is located; defaults to storeroot-dir +commandqueue-dir = + +# Port +port = 20002 +use-ssl = false + +# Session timeout in minutes +session-timeout = 720 + +# Path to the keystore +keystore.path = etc/openBIS.keystore +# Password of the keystore +keystore.password = changeit +# Key password of the keystore +keystore.key-password = changeit + +# The check interval (in seconds) +check-interval = 5 + +quiet-period = 10 + + +# The time-out for clean up work in the shutdown sequence (in seconds). +# Note that that the maximal time for the shutdown sequence to complete can be as large +# as twice this time. +# Remark: On a network file system, it is not recommended to turn this value to something +# lower than 180. +shutdown-timeout = 180 + +# The minimum time (in seconds) of availability of the data stream since moment when user requested +# for the data stream url. If not specified default value (20 seconds) will be used. +# minimum-time-to-keep-streams-in-sec = 20 + +#�If free disk space goes below value defined here, a notification email will be sent. +# Value must be specified in kilobytes (1048576 = 1024 * 1024 = 1GB). If no high water mark is +# specified or if value is negative, the system will not be watching. There are 2 different kinds +# of highwater mark supported: the one that is checking the space on the store, and one that is +# checking the amount of free space for recovery state (on the local filesystem). +highwater-mark = -1 +recovery-highwater-mark = -1 + +# If a data set is successfully registered it sends out an email to the registrator. +# If this property is not specified, no email is sent to the registrator. This property +# does not affect the mails which are sent, when the data set could not be registered. +notify-successful-registration = false + +# The URL of the openBIS server +server-url = ${host-address}:20000 + +# The username to use when contacting the openBIS server +username = etlserver + +# The password for the etlserver user who contacts the openBIS server +password=e1AWO4f0ro + +# The base URL for Web client access to the data store server. +download-url = ${host-address}:${port} + +# SMTP properties (must start with 'mail' to be considered). +# The current configuration saves the emails in the file system in the root directory +mail.smtp.host = file://${root-dir} +# mail.smtp.host = localhost +# mail.from = openbis-dss@localhost +# mail.smtp.user = +# mail.smtp.password = + + +# Data sources +data-sources = path-info-db + +# Data source for pathinfo database +path-info-db.version-holder-class = ch.systemsx.cisd.openbis.dss.generic.shared.PathInfoDatabaseVersionHolder +path-info-db.databaseEngineCode = postgresql +path-info-db.basicDatabaseName = pathinfo +# The host and optionally port. Default is 'localhost'. +# path-info-db.urlHostPart = +path-info-db.databaseKind = test_js_common2 +path-info-db.scriptFolder = datastore_server/sql + +# --------------------------------------------------------------------------- +# maintenance plugins configuration +# --------------------------------------------------------------------------- + +# Comma separated names of maintenance plugins. Each plugin should have configuration properties prefixed with its name. +maintenance-plugins = post-registration, path-info-deletion + +# Maintenance task for post registration of all paths of a freshly registered data set to be fed into pathinfo database +post-registration.class = ch.systemsx.cisd.etlserver.postregistration.PostRegistrationMaintenanceTask +post-registration.interval = 30 +post-registration.cleanup-tasks-folder = ${root-dir}/post-registration/cleanup-tasks +post-registration.last-seen-data-set-file = ${root-dir}/post-registration/last-seen-data-set.txt +post-registration.post-registration-tasks = pathinfo-feeding +post-registration.pathinfo-feeding.class = ch.systemsx.cisd.etlserver.path.PathInfoDatabaseFeedingTask +post-registration.pathinfo-feeding.compute-checksum = true + +# Maintenance task for deleting entries from pathinfo database after deletion of a data set +path-info-deletion.class = ch.systemsx.cisd.etlserver.plugins.DeleteFromExternalDBMaintenanceTask +path-info-deletion.interval = 120 +path-info-deletion.data-source = path-info-db +path-info-deletion.data-set-table-name = data_sets +path-info-deletion.data-set-perm-id = CODE + +# --------------------------------------------------------------------------- +# processing plugins configuration +# --------------------------------------------------------------------------- + +# Comma separated names of processing plugins. Each plugin should have configuration properties prefixed with its name. +processing-plugins = path-info-db-consistency-check + +# Processing task that checks the consistency between the data store and the meta information stored in the PathInfoDB. +# It sends out an email which contains all differences found. +path-info-db-consistency-check.label = Path Info DB consistency check +path-info-db-consistency-check.dataset-types = .* +path-info-db-consistency-check.class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.DataSetAndPathInfoDBConsistencyCheckProcessingPlugin + +# --------------------------------------------------------------------------- +# dropbox configurations +# --------------------------------------------------------------------------- +inputs = default-dropbox +dss-rpc.put-default = default-dropbox +imaging + +default-dropbox.incoming-dir = ${incoming-root-dir}/incoming-default +default-dropbox.incoming-data-completeness-condition = auto-detection +default-dropbox.top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2 +default-dropbox.program-class = ch.systemsx.cisd.etlserver.registrator.DefaultDropbox +default-dropbox.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor +default-dropbox.validation-script-path = ../core-plugins/default/default-validation-script.py + +# --------------------------------------------------------------------------- +# Archiver configuration (optional) +# --------------------------------------------------------------------------- + +# Configuration of an archiver task. All properties are prefixed with 'archiver.'. + +# Archiver class specification (together with the list of packages this class belongs to). +#archiver.class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.demo.DemoArchiver + +# --------------------------------------------------------------------------- +# Imaging database for screening (optional, only used if screening technology switched on) +# --------------------------------------------------------------------------- +# Format: <host>[:<port>]. Default: localhost +# imaging-database.url-host-part = +# Default: prod. +imaging-database.kind = test_js_common2 + + +# --------------------------------------------------------------------------- +# INTERNAL CONFIGURATION, +# Do not change this part unless you are developing openBIS extensions. +# --------------------------------------------------------------------------- + diff --git a/js-test/servers/common/openBIS-server/.dynamic_property_evaluator_queue b/js-test/servers/common/openBIS-server/.dynamic_property_evaluator_queue new file mode 100644 index 0000000000000000000000000000000000000000..1cfcacbd0f48514ab45f71cbce5f8039a443f13a Binary files /dev/null and b/js-test/servers/common/openBIS-server/.dynamic_property_evaluator_queue differ diff --git a/js-test/servers/common/openBIS-server/db/openbis_test_js_common.sql b/js-test/servers/common/openBIS-server/db/openbis_test_js_common.sql new file mode 100644 index 0000000000000000000000000000000000000000..32b1df3e3c6c0d14c36bf72c6fcef08e80d91be4 --- /dev/null +++ b/js-test/servers/common/openBIS-server/db/openbis_test_js_common.sql @@ -0,0 +1,11909 @@ +-- +-- PostgreSQL database dump +-- + +SET statement_timeout = 0; +SET client_encoding = 'UTF8'; +SET standard_conforming_strings = on; +SET check_function_bodies = false; +SET client_min_messages = warning; + +-- +-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: - +-- + +CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog; + + +-- +-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: - +-- + +COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language'; + + +SET search_path = public, pg_catalog; + +-- +-- Name: archiving_status; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN archiving_status AS character varying(100) + CONSTRAINT archiving_status_check CHECK (((VALUE)::text = ANY (ARRAY[('LOCKED'::character varying)::text, ('AVAILABLE'::character varying)::text, ('ARCHIVED'::character varying)::text, ('ARCHIVE_PENDING'::character varying)::text, ('UNARCHIVE_PENDING'::character varying)::text, ('BACKUP_PENDING'::character varying)::text]))); + + +-- +-- Name: authorization_role; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN authorization_role AS character varying(40) + CONSTRAINT authorization_role_check CHECK (((VALUE)::text = ANY (ARRAY[('ADMIN'::character varying)::text, ('POWER_USER'::character varying)::text, ('USER'::character varying)::text, ('OBSERVER'::character varying)::text, ('ETL_SERVER'::character varying)::text]))); + + +-- +-- Name: boolean_char; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN boolean_char AS boolean DEFAULT false; + + +-- +-- Name: boolean_char_or_unknown; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN boolean_char_or_unknown AS character(1) DEFAULT 'U'::bpchar + CONSTRAINT boolean_char_or_unknown_check CHECK ((VALUE = ANY (ARRAY['F'::bpchar, 'T'::bpchar, 'U'::bpchar]))); + + +-- +-- Name: code; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN code AS character varying(60); + + +-- +-- Name: column_label; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN column_label AS character varying(128); + + +-- +-- Name: data_set_kind; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN data_set_kind AS character varying(40) + CONSTRAINT data_set_kind_check CHECK (((VALUE)::text = ANY (ARRAY[('PHYSICAL'::character varying)::text, ('LINK'::character varying)::text, ('CONTAINER'::character varying)::text]))); + + +-- +-- Name: data_store_service_kind; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN data_store_service_kind AS character varying(40) + CONSTRAINT data_store_service_kind_check CHECK (((VALUE)::text = ANY (ARRAY[('PROCESSING'::character varying)::text, ('QUERIES'::character varying)::text]))); + + +-- +-- Name: data_store_service_reporting_plugin_type; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN data_store_service_reporting_plugin_type AS character varying(40) + CONSTRAINT data_store_service_reporting_plugin_type_check CHECK (((VALUE)::text = ANY (ARRAY[('TABLE_MODEL'::character varying)::text, ('DSS_LINK'::character varying)::text, ('AGGREGATION_TABLE_MODEL'::character varying)::text]))); + + +-- +-- Name: description_2000; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN description_2000 AS character varying(2000); + + +-- +-- Name: entity_kind; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN entity_kind AS character varying(40) + CONSTRAINT entity_kind_check CHECK (((VALUE)::text = ANY (ARRAY[('SAMPLE'::character varying)::text, ('EXPERIMENT'::character varying)::text, ('DATA_SET'::character varying)::text, ('MATERIAL'::character varying)::text]))); + + +-- +-- Name: event_type; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN event_type AS character varying(40) + CONSTRAINT event_type_check CHECK (((VALUE)::text = ANY (ARRAY[('DELETION'::character varying)::text, ('MOVEMENT'::character varying)::text]))); + + +-- +-- Name: file; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN file AS bytea; + + +-- +-- Name: file_name; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN file_name AS character varying(100); + + +-- +-- Name: grid_expression; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN grid_expression AS character varying(2000); + + +-- +-- Name: grid_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN grid_id AS character varying(200); + + +-- +-- Name: identifier; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN identifier AS character varying(200); + + +-- +-- Name: object_name; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN object_name AS character varying(50); + + +-- +-- Name: ordinal_int; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN ordinal_int AS bigint + CONSTRAINT ordinal_int_check CHECK ((VALUE > 0)); + + +-- +-- Name: plugin_type; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN plugin_type AS character varying(40) + CONSTRAINT plugin_type_check CHECK (((VALUE)::text = ANY (ARRAY[('JYTHON'::character varying)::text, ('PREDEPLOYED'::character varying)::text]))); + + +-- +-- Name: query_type; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN query_type AS character varying(40) + CONSTRAINT query_type_check CHECK (((VALUE)::text = ANY (ARRAY[('GENERIC'::character varying)::text, ('EXPERIMENT'::character varying)::text, ('SAMPLE'::character varying)::text, ('DATA_SET'::character varying)::text, ('MATERIAL'::character varying)::text]))); + + +-- +-- Name: real_value; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN real_value AS real; + + +-- +-- Name: script_type; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN script_type AS character varying(40) + CONSTRAINT script_type_check CHECK (((VALUE)::text = ANY (ARRAY[('DYNAMIC_PROPERTY'::character varying)::text, ('MANAGED_PROPERTY'::character varying)::text, ('ENTITY_VALIDATION'::character varying)::text]))); + + +-- +-- Name: tech_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN tech_id AS bigint; + + +-- +-- Name: text_value; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN text_value AS text; + + +-- +-- Name: time_stamp; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN time_stamp AS timestamp with time zone; + + +-- +-- Name: time_stamp_dfl; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN time_stamp_dfl AS timestamp with time zone NOT NULL DEFAULT now(); + + +-- +-- Name: title_100; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN title_100 AS character varying(100); + + +-- +-- Name: user_id; Type: DOMAIN; Schema: public; Owner: - +-- + +CREATE DOMAIN user_id AS character varying(50); + + +-- +-- Name: check_created_or_modified_data_set_owner_is_alive(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION check_created_or_modified_data_set_owner_is_alive() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + owner_code CODE; + owner_del_id TECH_ID; +BEGIN + IF (NEW.del_id IS NOT NULL) THEN + RETURN NEW; + END IF; + + -- check sample + IF (NEW.samp_id IS NOT NULL) THEN + SELECT del_id, code INTO owner_del_id, owner_code + FROM samples + WHERE id = NEW.samp_id; + IF (owner_del_id IS NOT NULL) THEN + RAISE EXCEPTION 'Data Set (Code: %) cannot be connected to a Sample (Code: %) %.', + NEW.code, owner_code, deletion_description(owner_del_id); + END IF; + END IF; + -- check experiment + SELECT del_id, code INTO owner_del_id, owner_code + FROM experiments + WHERE id = NEW.expe_id; + IF (owner_del_id IS NOT NULL) THEN + RAISE EXCEPTION 'Data Set (Code: %) cannot be connected to an Experiment (Code: %) %.', + NEW.code, owner_code, deletion_description(owner_del_id); + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: check_created_or_modified_sample_owner_is_alive(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION check_created_or_modified_sample_owner_is_alive() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + owner_code CODE; + owner_del_id TECH_ID; +BEGIN + IF (NEW.del_id IS NOT NULL) THEN + RETURN NEW; + END IF; + + -- check experiment (can't be deleted) + IF (NEW.expe_id IS NOT NULL) THEN + SELECT del_id, code INTO owner_del_id, owner_code + FROM experiments + WHERE id = NEW.expe_id; + IF (owner_del_id IS NOT NULL) THEN + RAISE EXCEPTION 'Sample (Code: %) cannot be connected to an Experiment (Code: %) %.', + NEW.code, owner_code, deletion_description(owner_del_id); + END IF; + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: check_deletion_consistency_on_experiment_deletion(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION check_deletion_consistency_on_experiment_deletion() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + counter INTEGER; +BEGIN + IF (OLD.del_id IS NOT NULL OR NEW.del_id IS NULL) THEN + RETURN NEW; + END IF; + + -- check datasets + SELECT count(*) INTO counter + FROM data + WHERE data.expe_id = NEW.id AND data.del_id IS NULL; + IF (counter > 0) THEN + RAISE EXCEPTION 'Experiment (Code: %) deletion failed because at least one of its data sets was not deleted.', NEW.code; + END IF; + -- check samples + SELECT count(*) INTO counter + FROM samples + WHERE samples.expe_id = NEW.id AND samples.del_id IS NULL; + IF (counter > 0) THEN + RAISE EXCEPTION 'Experiment (Code: %) deletion failed because at least one of its samples was not deleted.', NEW.code; + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: check_deletion_consistency_on_sample_deletion(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION check_deletion_consistency_on_sample_deletion() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + counter INTEGER; +BEGIN + IF (OLD.del_id IS NOT NULL OR NEW.del_id IS NULL) THEN + RETURN NEW; + END IF; + + -- all directly connected data sets need to be deleted + -- check datasets + SELECT count(*) INTO counter + FROM data + WHERE data.samp_id = NEW.id AND data.del_id IS NULL; + IF (counter > 0) THEN + RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its data sets was not deleted.', NEW.code; + END IF; + -- all components need to be deleted + SELECT count(*) INTO counter + FROM samples + WHERE samples.samp_id_part_of = NEW.id AND samples.del_id IS NULL; + IF (counter > 0) THEN + RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its component samples was not deleted.', NEW.code; + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: controlled_vocabulary_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION controlled_vocabulary_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_code CODE; +BEGIN + + select code into v_code from data_types where id = NEW.daty_id; + + -- Check if the data is of type "CONTROLLEDVOCABULARY" + if v_code = 'CONTROLLEDVOCABULARY' then + if NEW.covo_id IS NULL then + RAISE EXCEPTION 'Insert/Update of Property Type (Code: %) failed, as its Data Type is CONTROLLEDVOCABULARY, but it is not linked to a Controlled Vocabulary.', NEW.code; + end if; + end if; + + RETURN NEW; + +END; +$$; + + +-- +-- Name: data_set_property_with_material_data_type_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION data_set_property_with_material_data_type_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from data_set_type_property_types dstpt, property_types pt + where NEW.dstpt_id = dstpt.id AND dstpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: deletion_description(tech_id); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION deletion_description(del_id tech_id) RETURNS character varying + LANGUAGE plpgsql + AS $$ +DECLARE + del_person VARCHAR; + del_date VARCHAR; + del_reason VARCHAR; +BEGIN + SELECT p.last_name || ' ' || p.first_name || ' (' || p.email || ')', + to_char(d.registration_timestamp, 'YYYY-MM-DD HH:MM:SS'), d.reason + INTO del_person, del_date, del_reason FROM deletions d, persons p + WHERE d.pers_id_registerer = p.id AND d.id = del_id; + RETURN 'deleted by ' || del_person || ' on ' || del_date || ' with reason: "' || del_reason || '"'; +END; +$$; + + +-- +-- Name: experiment_property_with_material_data_type_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION experiment_property_with_material_data_type_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from experiment_type_property_types etpt, property_types pt + where NEW.etpt_id = etpt.id AND etpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: external_data_storage_format_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION external_data_storage_format_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_covo_code CODE; + data_code CODE; +BEGIN + + select code into v_covo_code from controlled_vocabularies + where is_internal_namespace = true and + id = (select covo_id from controlled_vocabulary_terms where id = NEW.cvte_id_stor_fmt); + -- Check if the data storage format is a term of the controlled vocabulary "STORAGE_FORMAT" + if v_covo_code != 'STORAGE_FORMAT' then + select code into data_code from data_all where id = NEW.data_id; + RAISE EXCEPTION 'Insert/Update of Data (Code: %) failed, as its Storage Format is %, but is required to be STORAGE_FORMAT.', data_code, v_covo_code; + end if; + + RETURN NEW; + +END; +$$; + + +-- +-- Name: material_property_with_material_data_type_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION material_property_with_material_data_type_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from material_type_property_types etpt, property_types pt + where NEW.mtpt_id = etpt.id AND etpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: preserve_deletion_consistency_on_data_set_relationships(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION preserve_deletion_consistency_on_data_set_relationships() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + delid TECH_ID; +BEGIN + IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN + RETURN NEW; + END IF; + SELECT del_id INTO delid + FROM DATA_ALL where id = NEW.data_id_parent; + IF (delid IS NOT NULL) THEN + NEW.del_id = delid; + END IF; + SELECT del_id INTO delid + FROM DATA_ALL where id = NEW.data_id_child; + IF (delid IS NOT NULL) THEN + NEW.del_id = delid; + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: preserve_deletion_consistency_on_sample_relationships(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION preserve_deletion_consistency_on_sample_relationships() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + delid TECH_ID; +BEGIN + IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN + RETURN NEW; + END IF; + SELECT del_id INTO delid + FROM SAMPLES_ALL where id = NEW.sample_id_parent; + IF (delid IS NOT NULL) THEN + NEW.del_id = delid; + END IF; + SELECT del_id INTO delid + FROM SAMPLES_ALL where id = NEW.sample_id_child; + IF (delid IS NOT NULL) THEN + NEW.del_id = delid; + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: rename_sequence(character varying, character varying); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION rename_sequence(old_name character varying, new_name character varying) RETURNS integer + LANGUAGE plpgsql + AS $$ +DECLARE + CURR_SEQ_VAL INTEGER; +BEGIN + SELECT INTO CURR_SEQ_VAL NEXTVAL(OLD_NAME); + EXECUTE 'CREATE SEQUENCE ' || NEW_NAME || ' START WITH ' || CURR_SEQ_VAL; + EXECUTE 'DROP SEQUENCE ' || OLD_NAME; + RETURN CURR_SEQ_VAL; +END; +$$; + + +-- +-- Name: sample_fill_code_unique_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION sample_fill_code_unique_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + NEW.code_unique_check = NEW.code || ',' || coalesce(NEW.samp_id_part_of, -1) || ',' || coalesce(NEW.space_id, -1) || ',' || coalesce(NEW.dbin_id, -1); + RETURN NEW; +END; +$$; + + +-- +-- Name: sample_fill_subcode_unique_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION sample_fill_subcode_unique_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + unique_subcode BOOLEAN_CHAR; +BEGIN + SELECT is_subcode_unique into unique_subcode FROM sample_types WHERE id = NEW.saty_id; + + IF (unique_subcode) THEN + NEW.subcode_unique_check = NEW.code || ',' || coalesce(NEW.saty_id, -1) || ',' || coalesce(NEW.space_id, -1) || ',' || coalesce(NEW.dbin_id, -1); + ELSE + NEW.subcode_unique_check = NULL; + END IF; + + RETURN NEW; +END; +$$; + + +-- +-- Name: sample_property_with_material_data_type_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION sample_property_with_material_data_type_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from sample_type_property_types etpt, property_types pt + where NEW.stpt_id = etpt.id AND etpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$; + + +-- +-- Name: sample_type_fill_subcode_unique_check(); Type: FUNCTION; Schema: public; Owner: - +-- + +CREATE FUNCTION sample_type_fill_subcode_unique_check() RETURNS trigger + LANGUAGE plpgsql + AS $$ +BEGIN + IF (NEW.is_subcode_unique::boolean <> OLD.is_subcode_unique::boolean) THEN + UPDATE samples_all SET subcode_unique_check = subcode_unique_check WHERE saty_id = NEW.id; + END IF; + RETURN NEW; +END; +$$; + + +-- +-- Name: attachment_content_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE attachment_content_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: attachment_content_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('attachment_content_id_seq', 4, true); + + +SET default_tablespace = ''; + +SET default_with_oids = false; + +-- +-- Name: attachment_contents; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE attachment_contents ( + id tech_id NOT NULL, + value file NOT NULL +); + + +-- +-- Name: attachment_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE attachment_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: attachment_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('attachment_id_seq', 4, true); + + +-- +-- Name: attachments; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE attachments ( + id tech_id NOT NULL, + expe_id tech_id, + samp_id tech_id, + proj_id tech_id, + exac_id tech_id NOT NULL, + file_name file_name NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + version integer NOT NULL, + pers_id_registerer tech_id NOT NULL, + title title_100, + description description_2000, + CONSTRAINT atta_arc_ck CHECK ((((((expe_id IS NOT NULL) AND (proj_id IS NULL)) AND (samp_id IS NULL)) OR (((expe_id IS NULL) AND (proj_id IS NOT NULL)) AND (samp_id IS NULL))) OR (((expe_id IS NULL) AND (proj_id IS NULL)) AND (samp_id IS NOT NULL)))) +); + + +-- +-- Name: authorization_group_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE authorization_group_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: authorization_group_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('authorization_group_id_seq', 1, false); + + +-- +-- Name: authorization_group_persons; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE authorization_group_persons ( + ag_id tech_id NOT NULL, + pers_id tech_id NOT NULL +); + + +-- +-- Name: authorization_groups; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE authorization_groups ( + id tech_id NOT NULL, + dbin_id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now() +); + + +-- +-- Name: code_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE code_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: code_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('code_seq', 21, true); + + +-- +-- Name: controlled_vocabularies; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE controlled_vocabularies ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + is_managed_internally boolean_char DEFAULT false NOT NULL, + is_internal_namespace boolean_char DEFAULT false NOT NULL, + dbin_id tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + is_chosen_from_list boolean_char DEFAULT true NOT NULL, + source_uri character varying(250) +); + + +-- +-- Name: controlled_vocabulary_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE controlled_vocabulary_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: controlled_vocabulary_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('controlled_vocabulary_id_seq', 25, true); + + +-- +-- Name: controlled_vocabulary_terms; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE controlled_vocabulary_terms ( + id tech_id NOT NULL, + code object_name NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + covo_id tech_id NOT NULL, + pers_id_registerer tech_id NOT NULL, + label column_label, + description description_2000, + ordinal ordinal_int NOT NULL, + is_official boolean_char DEFAULT true NOT NULL, + CONSTRAINT cvte_ck CHECK (((ordinal)::bigint > 0)) +); + + +-- +-- Name: core_plugin_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE core_plugin_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: core_plugin_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('core_plugin_id_seq', 3, true); + + +-- +-- Name: core_plugins; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE core_plugins ( + id tech_id NOT NULL, + name character varying(200) NOT NULL, + version integer NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + master_reg_script text_value +); + + +-- +-- Name: cvte_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE cvte_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: cvte_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('cvte_id_seq', 264, true); + + +-- +-- Name: data_all; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_all ( + id tech_id NOT NULL, + code code, + dsty_id tech_id NOT NULL, + dast_id tech_id NOT NULL, + expe_id tech_id NOT NULL, + data_producer_code code, + production_timestamp time_stamp, + samp_id tech_id, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id, + is_placeholder boolean_char DEFAULT false, + is_valid boolean_char DEFAULT true, + modification_timestamp time_stamp DEFAULT now(), + is_derived boolean_char NOT NULL, + ctnr_order integer, + ctnr_id tech_id DEFAULT NULL::bigint, + del_id tech_id, + orig_del tech_id, + pers_id_modifier tech_id, + version integer DEFAULT 0 +); + + +-- +-- Name: data; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW data AS + SELECT data_all.id, data_all.code, data_all.dsty_id, data_all.dast_id, data_all.expe_id, data_all.data_producer_code, data_all.production_timestamp, data_all.samp_id, data_all.registration_timestamp, data_all.pers_id_registerer, data_all.pers_id_modifier, data_all.is_placeholder, data_all.is_valid, data_all.modification_timestamp, data_all.is_derived, data_all.ctnr_order, data_all.ctnr_id, data_all.del_id, data_all.orig_del, data_all.version FROM data_all WHERE (data_all.del_id IS NULL); + + +-- +-- Name: data_deleted; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW data_deleted AS + SELECT data_all.id, data_all.code, data_all.dsty_id, data_all.dast_id, data_all.expe_id, data_all.data_producer_code, data_all.production_timestamp, data_all.samp_id, data_all.registration_timestamp, data_all.pers_id_registerer, data_all.pers_id_modifier, data_all.is_placeholder, data_all.is_valid, data_all.modification_timestamp, data_all.is_derived, data_all.ctnr_order, data_all.ctnr_id, data_all.del_id, data_all.orig_del, data_all.version FROM data_all WHERE (data_all.del_id IS NOT NULL); + + +-- +-- Name: data_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_id_seq', 32, true); + + +-- +-- Name: data_set_properties_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_properties_history ( + id tech_id NOT NULL, + ds_id tech_id NOT NULL, + dstpt_id tech_id NOT NULL, + value text_value, + vocabulary_term identifier, + material identifier, + pers_id_author tech_id NOT NULL, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp DEFAULT now(), + CONSTRAINT dsprh_ck CHECK ((((((value IS NOT NULL) AND (vocabulary_term IS NULL)) AND (material IS NULL)) OR (((value IS NULL) AND (vocabulary_term IS NOT NULL)) AND (material IS NULL))) OR (((value IS NULL) AND (vocabulary_term IS NULL)) AND (material IS NOT NULL)))) +); + + +-- +-- Name: data_set_relationships_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_relationships_history ( + id tech_id NOT NULL, + main_data_id tech_id NOT NULL, + relation_type text_value, + expe_id tech_id, + samp_id tech_id, + data_id tech_id, + entity_perm_id text_value, + pers_id_author tech_id, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp +); + + +-- +-- Name: data_set_history_view; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW data_set_history_view AS + SELECT (2 * (data_set_relationships_history.id)::bigint) AS id, data_set_relationships_history.main_data_id, data_set_relationships_history.relation_type, data_set_relationships_history.expe_id, data_set_relationships_history.samp_id, data_set_relationships_history.data_id, data_set_relationships_history.entity_perm_id, NULL::bigint AS dstpt_id, NULL::text AS value, NULL::character varying AS vocabulary_term, NULL::character varying AS material, data_set_relationships_history.pers_id_author, data_set_relationships_history.valid_from_timestamp, data_set_relationships_history.valid_until_timestamp FROM data_set_relationships_history WHERE (data_set_relationships_history.valid_until_timestamp IS NOT NULL) UNION SELECT ((2 * (data_set_properties_history.id)::bigint) + 1) AS id, data_set_properties_history.ds_id AS main_data_id, NULL::text AS relation_type, NULL::bigint AS expe_id, NULL::bigint AS samp_id, NULL::bigint AS data_id, NULL::text AS entity_perm_id, data_set_properties_history.dstpt_id, data_set_properties_history.value, data_set_properties_history.vocabulary_term, data_set_properties_history.material, data_set_properties_history.pers_id_author, data_set_properties_history.valid_until_timestamp AS valid_from_timestamp, data_set_properties_history.valid_until_timestamp FROM data_set_properties_history; + + +-- +-- Name: data_set_properties; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_properties ( + id tech_id NOT NULL, + ds_id tech_id NOT NULL, + dstpt_id tech_id NOT NULL, + value text_value, + cvte_id tech_id, + mate_prop_id tech_id, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_author tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + CONSTRAINT dspr_ck CHECK ((((((value IS NOT NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NULL)) OR (((value IS NULL) AND (cvte_id IS NOT NULL)) AND (mate_prop_id IS NULL))) OR (((value IS NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NOT NULL)))) +); + + +-- +-- Name: data_set_property_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_set_property_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_set_property_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_set_property_id_seq', 11, true); + + +-- +-- Name: data_set_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_set_relationship_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_set_relationship_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_set_relationship_id_seq', 1, false); + + +-- +-- Name: data_set_relationships_all; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_relationships_all ( + data_id_parent tech_id NOT NULL, + data_id_child tech_id NOT NULL, + del_id tech_id, + pers_id_author tech_id, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now() +); + + +-- +-- Name: data_set_relationships; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW data_set_relationships AS + SELECT data_set_relationships_all.data_id_parent, data_set_relationships_all.data_id_child, data_set_relationships_all.del_id, data_set_relationships_all.pers_id_author, data_set_relationships_all.registration_timestamp, data_set_relationships_all.modification_timestamp FROM data_set_relationships_all WHERE (data_set_relationships_all.del_id IS NULL); + + +-- +-- Name: data_set_relationships_history_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_set_relationships_history_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_set_relationships_history_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_set_relationships_history_id_seq', 73, true); + + +-- +-- Name: data_set_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_set_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_set_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_set_type_id_seq', 27, true); + + +-- +-- Name: data_set_type_property_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_type_property_types ( + id tech_id NOT NULL, + dsty_id tech_id NOT NULL, + prty_id tech_id NOT NULL, + is_mandatory boolean_char DEFAULT false NOT NULL, + is_managed_internally boolean_char DEFAULT false NOT NULL, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + ordinal ordinal_int NOT NULL, + section description_2000, + script_id tech_id, + is_shown_edit boolean_char DEFAULT true NOT NULL, + show_raw_value boolean_char DEFAULT false NOT NULL +); + + +-- +-- Name: data_set_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_set_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + dbin_id tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + main_ds_pattern character varying(300), + main_ds_path character varying(1000), + deletion_disallow boolean_char DEFAULT false, + data_set_kind data_set_kind DEFAULT 'PHYSICAL'::character varying NOT NULL, + validation_script_id tech_id +); + + +-- +-- Name: data_store_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_store_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_store_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_store_id_seq', 2, true); + + +-- +-- Name: data_store_service_data_set_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_store_service_data_set_types ( + data_store_service_id tech_id NOT NULL, + data_set_type_id tech_id NOT NULL +); + + +-- +-- Name: data_store_services; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_store_services ( + id tech_id NOT NULL, + key character varying(256) NOT NULL, + label character varying(256) NOT NULL, + kind data_store_service_kind NOT NULL, + data_store_id tech_id NOT NULL, + reporting_plugin_type data_store_service_reporting_plugin_type +); + + +-- +-- Name: data_store_services_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_store_services_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_store_services_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_store_services_id_seq', 211, true); + + +-- +-- Name: data_stores; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_stores ( + id tech_id NOT NULL, + dbin_id tech_id NOT NULL, + code code NOT NULL, + download_url character varying(1024) NOT NULL, + remote_url character varying(250) NOT NULL, + session_token character varying(50) NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + is_archiver_configured boolean_char DEFAULT false NOT NULL, + data_source_definitions text_value +); + + +-- +-- Name: data_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE data_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: data_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('data_type_id_seq', 10, true); + + +-- +-- Name: data_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE data_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000 NOT NULL +); + + +-- +-- Name: database_instance_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE database_instance_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: database_instance_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('database_instance_id_seq', 1, true); + + +-- +-- Name: database_instances; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE database_instances ( + id tech_id NOT NULL, + code code NOT NULL, + uuid code NOT NULL, + is_original_source boolean_char DEFAULT false NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL +); + + +-- +-- Name: database_version_logs; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE database_version_logs ( + db_version character varying(4) NOT NULL, + module_name character varying(250), + run_status character varying(10), + run_status_timestamp timestamp without time zone, + module_code bytea, + run_exception bytea +); + + +-- +-- Name: deletion_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE deletion_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: deletion_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('deletion_id_seq', 5, true); + + +-- +-- Name: deletions; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE deletions ( + id tech_id NOT NULL, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + reason description_2000 NOT NULL +); + + +-- +-- Name: dstpt_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE dstpt_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: dstpt_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('dstpt_id_seq', 36, true); + + +-- +-- Name: entity_operations_log; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE entity_operations_log ( + id tech_id NOT NULL, + registration_id tech_id NOT NULL +); + + +-- +-- Name: entity_operations_log_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE entity_operations_log_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: entity_operations_log_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('entity_operations_log_id_seq', 13, true); + + +-- +-- Name: etpt_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE etpt_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: etpt_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('etpt_id_seq', 1, true); + + +-- +-- Name: event_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE event_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: event_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('event_id_seq', 194, true); + + +-- +-- Name: events; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE events ( + id tech_id NOT NULL, + event_type event_type NOT NULL, + description text_value, + reason description_2000, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + entity_type character varying(80) NOT NULL, + identifiers text_value NOT NULL, + CONSTRAINT evnt_et_enum_ck CHECK (((entity_type)::text = ANY (ARRAY[('ATTACHMENT'::character varying)::text, ('DATASET'::character varying)::text, ('EXPERIMENT'::character varying)::text, ('SPACE'::character varying)::text, ('MATERIAL'::character varying)::text, ('PROJECT'::character varying)::text, ('PROPERTY_TYPE'::character varying)::text, ('SAMPLE'::character varying)::text, ('VOCABULARY'::character varying)::text, ('AUTHORIZATION_GROUP'::character varying)::text, ('METAPROJECT'::character varying)::text]))) +); + + +-- +-- Name: experiment_code_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiment_code_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiment_code_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiment_code_seq', 1, false); + + +-- +-- Name: experiment_properties_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiment_properties_history ( + id tech_id NOT NULL, + expe_id tech_id NOT NULL, + etpt_id tech_id NOT NULL, + value text_value, + vocabulary_term identifier, + material identifier, + pers_id_author tech_id NOT NULL, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp DEFAULT now(), + CONSTRAINT exprh_ck CHECK ((((((value IS NOT NULL) AND (vocabulary_term IS NULL)) AND (material IS NULL)) OR (((value IS NULL) AND (vocabulary_term IS NOT NULL)) AND (material IS NULL))) OR (((value IS NULL) AND (vocabulary_term IS NULL)) AND (material IS NOT NULL)))) +); + + +-- +-- Name: experiment_relationships_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiment_relationships_history ( + id tech_id NOT NULL, + main_expe_id tech_id NOT NULL, + relation_type text_value, + samp_id tech_id, + data_id tech_id, + entity_perm_id text_value, + pers_id_author tech_id, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp, + proj_id tech_id +); + + +-- +-- Name: experiment_history_view; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW experiment_history_view AS + SELECT (2 * (experiment_relationships_history.id)::bigint) AS id, experiment_relationships_history.main_expe_id, experiment_relationships_history.relation_type, experiment_relationships_history.proj_id, experiment_relationships_history.samp_id, experiment_relationships_history.data_id, experiment_relationships_history.entity_perm_id, NULL::bigint AS etpt_id, NULL::text AS value, NULL::character varying AS vocabulary_term, NULL::character varying AS material, experiment_relationships_history.pers_id_author, experiment_relationships_history.valid_from_timestamp, experiment_relationships_history.valid_until_timestamp FROM experiment_relationships_history WHERE (experiment_relationships_history.valid_until_timestamp IS NOT NULL) UNION SELECT ((2 * (experiment_properties_history.id)::bigint) + 1) AS id, experiment_properties_history.expe_id AS main_expe_id, NULL::text AS relation_type, NULL::bigint AS proj_id, NULL::bigint AS samp_id, NULL::bigint AS data_id, NULL::text AS entity_perm_id, experiment_properties_history.etpt_id, experiment_properties_history.value, experiment_properties_history.vocabulary_term, experiment_properties_history.material, experiment_properties_history.pers_id_author, experiment_properties_history.valid_until_timestamp AS valid_from_timestamp, experiment_properties_history.valid_until_timestamp FROM experiment_properties_history; + + +-- +-- Name: experiment_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiment_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiment_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiment_id_seq', 6, true); + + +-- +-- Name: experiment_properties; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiment_properties ( + id tech_id NOT NULL, + expe_id tech_id NOT NULL, + etpt_id tech_id NOT NULL, + value text_value, + cvte_id tech_id, + mate_prop_id tech_id, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_author tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + CONSTRAINT expr_ck CHECK ((((((value IS NOT NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NULL)) OR (((value IS NULL) AND (cvte_id IS NOT NULL)) AND (mate_prop_id IS NULL))) OR (((value IS NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NOT NULL)))) +); + + +-- +-- Name: experiment_property_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiment_property_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiment_property_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiment_property_id_seq', 1, false); + + +-- +-- Name: experiment_relationships_history_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiment_relationships_history_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiment_relationships_history_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiment_relationships_history_id_seq', 365, true); + + +-- +-- Name: experiment_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE experiment_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: experiment_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('experiment_type_id_seq', 5, true); + + +-- +-- Name: experiment_type_property_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiment_type_property_types ( + id tech_id NOT NULL, + exty_id tech_id NOT NULL, + prty_id tech_id NOT NULL, + is_mandatory boolean_char DEFAULT false NOT NULL, + is_managed_internally boolean_char DEFAULT false NOT NULL, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + ordinal ordinal_int NOT NULL, + section description_2000, + script_id tech_id, + is_shown_edit boolean_char DEFAULT true NOT NULL, + show_raw_value boolean_char DEFAULT false NOT NULL +); + + +-- +-- Name: experiment_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiment_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + dbin_id tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + validation_script_id tech_id +); + + +-- +-- Name: experiments_all; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE experiments_all ( + id tech_id NOT NULL, + perm_id code NOT NULL, + code code NOT NULL, + exty_id tech_id NOT NULL, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + proj_id tech_id NOT NULL, + del_id tech_id, + orig_del tech_id, + is_public boolean_char DEFAULT false NOT NULL, + pers_id_modifier tech_id, + version integer DEFAULT 0 +); + + +-- +-- Name: experiments; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW experiments AS + SELECT experiments_all.id, experiments_all.perm_id, experiments_all.code, experiments_all.exty_id, experiments_all.pers_id_registerer, experiments_all.pers_id_modifier, experiments_all.registration_timestamp, experiments_all.modification_timestamp, experiments_all.proj_id, experiments_all.del_id, experiments_all.orig_del, experiments_all.is_public, experiments_all.version FROM experiments_all WHERE (experiments_all.del_id IS NULL); + + +-- +-- Name: experiments_deleted; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW experiments_deleted AS + SELECT experiments_all.id, experiments_all.perm_id, experiments_all.code, experiments_all.exty_id, experiments_all.pers_id_registerer, experiments_all.pers_id_modifier, experiments_all.registration_timestamp, experiments_all.modification_timestamp, experiments_all.proj_id, experiments_all.del_id, experiments_all.orig_del, experiments_all.is_public, experiments_all.version FROM experiments_all WHERE (experiments_all.del_id IS NOT NULL); + + +-- +-- Name: external_data; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE external_data ( + data_id tech_id NOT NULL, + share_id code, + size ordinal_int, + location character varying(1024) NOT NULL, + ffty_id tech_id NOT NULL, + loty_id tech_id NOT NULL, + cvte_id_stor_fmt tech_id NOT NULL, + is_complete boolean_char_or_unknown DEFAULT 'U'::bpchar NOT NULL, + cvte_id_store tech_id, + status archiving_status DEFAULT 'AVAILABLE'::character varying NOT NULL, + present_in_archive boolean_char DEFAULT false, + speed_hint integer DEFAULT (-50) NOT NULL, + storage_confirmation boolean_char DEFAULT false NOT NULL +); + + +-- +-- Name: external_data_management_system_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE external_data_management_system_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: external_data_management_system_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('external_data_management_system_id_seq', 1, false); + + +-- +-- Name: external_data_management_systems; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE external_data_management_systems ( + id tech_id NOT NULL, + dbin_id tech_id, + code code, + label text_value, + url_template text_value, + is_openbis boolean DEFAULT false NOT NULL +); + + +-- +-- Name: file_format_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE file_format_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: file_format_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('file_format_type_id_seq', 10, true); + + +-- +-- Name: file_format_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE file_format_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + dbin_id tech_id NOT NULL +); + + +-- +-- Name: filter_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE filter_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: filter_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('filter_id_seq', 1, false); + + +-- +-- Name: filters; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE filters ( + id tech_id NOT NULL, + dbin_id tech_id NOT NULL, + name character varying(200) NOT NULL, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + expression text NOT NULL, + is_public boolean NOT NULL, + grid_id character varying(200) NOT NULL +); + + +-- +-- Name: grid_custom_columns; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE grid_custom_columns ( + id tech_id NOT NULL, + dbin_id tech_id NOT NULL, + code character varying(200) NOT NULL, + label column_label NOT NULL, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + expression grid_expression NOT NULL, + is_public boolean NOT NULL, + grid_id grid_id NOT NULL +); + + +-- +-- Name: grid_custom_columns_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE grid_custom_columns_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: grid_custom_columns_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('grid_custom_columns_id_seq', 1, false); + + +-- +-- Name: link_data; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE link_data ( + data_id tech_id NOT NULL, + edms_id tech_id NOT NULL, + external_code text_value NOT NULL +); + + +-- +-- Name: locator_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE locator_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: locator_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('locator_type_id_seq', 1, true); + + +-- +-- Name: locator_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE locator_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000 +); + + +-- +-- Name: material_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE material_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: material_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('material_id_seq', 14, true); + + +-- +-- Name: material_properties; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE material_properties ( + id tech_id NOT NULL, + mate_id tech_id NOT NULL, + mtpt_id tech_id NOT NULL, + value text_value, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_author tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + pers_id_registerer tech_id NOT NULL, + cvte_id tech_id, + mate_prop_id tech_id, + CONSTRAINT mapr_ck CHECK ((((((value IS NOT NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NULL)) OR (((value IS NULL) AND (cvte_id IS NOT NULL)) AND (mate_prop_id IS NULL))) OR (((value IS NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NOT NULL)))) +); + + +-- +-- Name: material_properties_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE material_properties_history ( + id tech_id NOT NULL, + mate_id tech_id NOT NULL, + mtpt_id tech_id NOT NULL, + value text_value, + vocabulary_term identifier, + material identifier, + pers_id_author tech_id NOT NULL, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp DEFAULT now(), + CONSTRAINT maprh_ck CHECK ((((((value IS NOT NULL) AND (vocabulary_term IS NULL)) AND (material IS NULL)) OR (((value IS NULL) AND (vocabulary_term IS NOT NULL)) AND (material IS NULL))) OR (((value IS NULL) AND (vocabulary_term IS NULL)) AND (material IS NOT NULL)))) +); + + +-- +-- Name: material_property_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE material_property_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: material_property_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('material_property_id_seq', 21, true); + + +-- +-- Name: material_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE material_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: material_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('material_type_id_seq', 4, true); + + +-- +-- Name: material_type_property_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE material_type_property_types ( + id tech_id NOT NULL, + maty_id tech_id NOT NULL, + prty_id tech_id NOT NULL, + is_mandatory boolean_char DEFAULT false NOT NULL, + is_managed_internally boolean_char DEFAULT false NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + ordinal ordinal_int NOT NULL, + section description_2000, + script_id tech_id, + is_shown_edit boolean_char DEFAULT true NOT NULL, + show_raw_value boolean_char DEFAULT false NOT NULL +); + + +-- +-- Name: material_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE material_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + dbin_id tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + validation_script_id tech_id +); + + +-- +-- Name: materials; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE materials ( + id tech_id NOT NULL, + code code NOT NULL, + maty_id tech_id NOT NULL, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + dbin_id tech_id NOT NULL +); + + +-- +-- Name: metaproject_assignment_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE metaproject_assignment_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: metaproject_assignment_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('metaproject_assignment_id_seq', 21, true); + + +-- +-- Name: metaproject_assignments_all; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE metaproject_assignments_all ( + id tech_id NOT NULL, + mepr_id tech_id NOT NULL, + expe_id tech_id, + samp_id tech_id, + data_id tech_id, + mate_id tech_id, + del_id tech_id, + creation_date time_stamp_dfl DEFAULT now() NOT NULL, + CONSTRAINT metaproject_assignments_all_check_nn CHECK ((((((((expe_id IS NOT NULL) AND (samp_id IS NULL)) AND (data_id IS NULL)) AND (mate_id IS NULL)) OR ((((expe_id IS NULL) AND (samp_id IS NOT NULL)) AND (data_id IS NULL)) AND (mate_id IS NULL))) OR ((((expe_id IS NULL) AND (samp_id IS NULL)) AND (data_id IS NOT NULL)) AND (mate_id IS NULL))) OR ((((expe_id IS NULL) AND (samp_id IS NULL)) AND (data_id IS NULL)) AND (mate_id IS NOT NULL)))) +); + + +-- +-- Name: metaproject_assignments; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW metaproject_assignments AS + SELECT metaproject_assignments_all.id, metaproject_assignments_all.mepr_id, metaproject_assignments_all.expe_id, metaproject_assignments_all.samp_id, metaproject_assignments_all.data_id, metaproject_assignments_all.mate_id, metaproject_assignments_all.del_id, metaproject_assignments_all.creation_date FROM metaproject_assignments_all WHERE (metaproject_assignments_all.del_id IS NULL); + + +-- +-- Name: metaproject_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE metaproject_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: metaproject_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('metaproject_id_seq', 183, true); + + +-- +-- Name: metaprojects; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE metaprojects ( + id tech_id NOT NULL, + name code NOT NULL, + description description_2000, + owner tech_id NOT NULL, + private boolean_char DEFAULT true NOT NULL, + creation_date time_stamp_dfl DEFAULT now() NOT NULL +); + + +-- +-- Name: mtpt_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE mtpt_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: mtpt_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('mtpt_id_seq', 8, true); + + +-- +-- Name: perm_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE perm_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: perm_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('perm_id_seq', 435, true); + + +-- +-- Name: person_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE person_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: person_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('person_id_seq', 9, true); + + +-- +-- Name: persons; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE persons ( + id tech_id NOT NULL, + first_name character varying(30), + last_name character varying(30), + user_id user_id NOT NULL, + email object_name, + dbin_id tech_id NOT NULL, + space_id tech_id, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id, + display_settings file, + is_active boolean DEFAULT true +); + + +-- +-- Name: post_registration_dataset_queue; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE post_registration_dataset_queue ( + id tech_id NOT NULL, + ds_id tech_id NOT NULL +); + + +-- +-- Name: post_registration_dataset_queue_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE post_registration_dataset_queue_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: post_registration_dataset_queue_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('post_registration_dataset_queue_id_seq', 20, true); + + +-- +-- Name: project_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE project_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: project_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('project_id_seq', 4, true); + + +-- +-- Name: project_relationships_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE project_relationships_history ( + id tech_id NOT NULL, + main_proj_id tech_id NOT NULL, + relation_type text_value, + expe_id tech_id, + space_id tech_id, + entity_perm_id text_value, + pers_id_author tech_id, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp +); + + +-- +-- Name: project_relationships_history_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE project_relationships_history_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: project_relationships_history_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('project_relationships_history_id_seq', 10, true); + + +-- +-- Name: projects; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE projects ( + id tech_id NOT NULL, + perm_id code NOT NULL, + code code NOT NULL, + space_id tech_id NOT NULL, + pers_id_leader tech_id, + description description_2000, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + pers_id_modifier tech_id, + version integer DEFAULT 0 +); + + +-- +-- Name: property_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE property_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: property_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('property_type_id_seq', 103, true); + + +-- +-- Name: property_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE property_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000 NOT NULL, + label column_label NOT NULL, + daty_id tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + covo_id tech_id, + is_managed_internally boolean_char DEFAULT false NOT NULL, + is_internal_namespace boolean_char DEFAULT false NOT NULL, + dbin_id tech_id NOT NULL, + maty_prop_id tech_id, + schema text_value, + transformation text_value +); + + +-- +-- Name: queries; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE queries ( + id tech_id NOT NULL, + dbin_id tech_id NOT NULL, + name character varying(200) NOT NULL, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + expression text NOT NULL, + is_public boolean NOT NULL, + query_type query_type NOT NULL, + entity_type_code code, + db_key code DEFAULT '1'::character varying NOT NULL +); + + +-- +-- Name: query_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE query_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: query_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('query_id_seq', 1, true); + + +-- +-- Name: relationship_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE relationship_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: relationship_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('relationship_type_id_seq', 2, true); + + +-- +-- Name: relationship_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE relationship_types ( + id tech_id NOT NULL, + code code NOT NULL, + label column_label, + parent_label column_label, + child_label column_label, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + is_managed_internally boolean_char DEFAULT false NOT NULL, + is_internal_namespace boolean_char DEFAULT false NOT NULL, + dbin_id tech_id NOT NULL +); + + +-- +-- Name: role_assignment_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE role_assignment_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: role_assignment_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('role_assignment_id_seq', 7, true); + + +-- +-- Name: role_assignments; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE role_assignments ( + id tech_id NOT NULL, + role_code authorization_role NOT NULL, + space_id tech_id, + dbin_id tech_id, + pers_id_grantee tech_id, + ag_id_grantee tech_id, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + CONSTRAINT roas_ag_pers_arc_ck CHECK ((((ag_id_grantee IS NOT NULL) AND (pers_id_grantee IS NULL)) OR ((ag_id_grantee IS NULL) AND (pers_id_grantee IS NOT NULL)))), + CONSTRAINT roas_dbin_space_arc_ck CHECK ((((dbin_id IS NOT NULL) AND (space_id IS NULL)) OR ((dbin_id IS NULL) AND (space_id IS NOT NULL)))) +); + + +-- +-- Name: sample_code_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE sample_code_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: sample_code_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('sample_code_seq', 1, false); + + +-- +-- Name: sample_properties_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE sample_properties_history ( + id tech_id NOT NULL, + samp_id tech_id NOT NULL, + stpt_id tech_id NOT NULL, + value text_value, + vocabulary_term identifier, + material identifier, + pers_id_author tech_id NOT NULL, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp DEFAULT now(), + CONSTRAINT saprh_ck CHECK ((((((value IS NOT NULL) AND (vocabulary_term IS NULL)) AND (material IS NULL)) OR (((value IS NULL) AND (vocabulary_term IS NOT NULL)) AND (material IS NULL))) OR (((value IS NULL) AND (vocabulary_term IS NULL)) AND (material IS NOT NULL)))) +); + + +-- +-- Name: sample_relationships_history; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE sample_relationships_history ( + id tech_id NOT NULL, + main_samp_id tech_id NOT NULL, + relation_type text_value, + expe_id tech_id, + samp_id tech_id, + data_id tech_id, + entity_perm_id text_value, + pers_id_author tech_id, + valid_from_timestamp time_stamp NOT NULL, + valid_until_timestamp time_stamp, + space_id tech_id +); + + +-- +-- Name: sample_history_view; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW sample_history_view AS + SELECT (2 * (sample_relationships_history.id)::bigint) AS id, sample_relationships_history.main_samp_id, sample_relationships_history.relation_type, sample_relationships_history.space_id, sample_relationships_history.expe_id, sample_relationships_history.samp_id, sample_relationships_history.data_id, sample_relationships_history.entity_perm_id, NULL::bigint AS stpt_id, NULL::text AS value, NULL::character varying AS vocabulary_term, NULL::character varying AS material, sample_relationships_history.pers_id_author, sample_relationships_history.valid_from_timestamp, sample_relationships_history.valid_until_timestamp FROM sample_relationships_history WHERE (sample_relationships_history.valid_until_timestamp IS NOT NULL) UNION SELECT ((2 * (sample_properties_history.id)::bigint) + 1) AS id, sample_properties_history.samp_id AS main_samp_id, NULL::text AS relation_type, NULL::bigint AS space_id, NULL::bigint AS expe_id, NULL::bigint AS samp_id, NULL::bigint AS data_id, NULL::text AS entity_perm_id, sample_properties_history.stpt_id, sample_properties_history.value, sample_properties_history.vocabulary_term, sample_properties_history.material, sample_properties_history.pers_id_author, sample_properties_history.valid_until_timestamp AS valid_from_timestamp, sample_properties_history.valid_until_timestamp FROM sample_properties_history; + + +-- +-- Name: sample_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE sample_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: sample_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('sample_id_seq', 353, true); + + +-- +-- Name: sample_properties; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE sample_properties ( + id tech_id NOT NULL, + samp_id tech_id NOT NULL, + stpt_id tech_id NOT NULL, + value text_value, + cvte_id tech_id, + mate_prop_id tech_id, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_author tech_id NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + CONSTRAINT sapr_ck CHECK ((((((value IS NOT NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NULL)) OR (((value IS NULL) AND (cvte_id IS NOT NULL)) AND (mate_prop_id IS NULL))) OR (((value IS NULL) AND (cvte_id IS NULL)) AND (mate_prop_id IS NOT NULL)))) +); + + +-- +-- Name: sample_property_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE sample_property_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: sample_property_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('sample_property_id_seq', 696, true); + + +-- +-- Name: sample_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE sample_relationship_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: sample_relationship_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('sample_relationship_id_seq', 3, true); + + +-- +-- Name: sample_relationships_all; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE sample_relationships_all ( + id tech_id NOT NULL, + sample_id_parent tech_id NOT NULL, + relationship_id tech_id NOT NULL, + sample_id_child tech_id NOT NULL, + del_id tech_id, + pers_id_author tech_id, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now() +); + + +-- +-- Name: sample_relationships; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW sample_relationships AS + SELECT sample_relationships_all.id, sample_relationships_all.sample_id_parent, sample_relationships_all.relationship_id, sample_relationships_all.sample_id_child, sample_relationships_all.del_id, sample_relationships_all.pers_id_author, sample_relationships_all.registration_timestamp, sample_relationships_all.modification_timestamp FROM sample_relationships_all WHERE (sample_relationships_all.del_id IS NULL); + + +-- +-- Name: sample_relationships_history_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE sample_relationships_history_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: sample_relationships_history_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('sample_relationships_history_id_seq', 1065, true); + + +-- +-- Name: sample_type_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE sample_type_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: sample_type_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('sample_type_id_seq', 13, true); + + +-- +-- Name: sample_type_property_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE sample_type_property_types ( + id tech_id NOT NULL, + saty_id tech_id NOT NULL, + prty_id tech_id NOT NULL, + is_mandatory boolean_char DEFAULT false NOT NULL, + is_managed_internally boolean_char DEFAULT false NOT NULL, + pers_id_registerer tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + is_displayed boolean_char DEFAULT true NOT NULL, + ordinal ordinal_int NOT NULL, + section description_2000, + script_id tech_id, + is_shown_edit boolean_char DEFAULT true NOT NULL, + show_raw_value boolean_char DEFAULT false NOT NULL +); + + +-- +-- Name: sample_types; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE sample_types ( + id tech_id NOT NULL, + code code NOT NULL, + description description_2000, + dbin_id tech_id NOT NULL, + is_listable boolean_char DEFAULT true NOT NULL, + generated_from_depth integer DEFAULT 0 NOT NULL, + part_of_depth integer DEFAULT 0 NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + is_auto_generated_code boolean_char DEFAULT false NOT NULL, + generated_code_prefix code DEFAULT 'S'::character varying NOT NULL, + is_subcode_unique boolean_char DEFAULT false NOT NULL, + inherit_properties boolean_char DEFAULT false NOT NULL, + validation_script_id tech_id, + show_parent_metadata boolean_char DEFAULT false NOT NULL +); + + +-- +-- Name: samples_all; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE samples_all ( + id tech_id NOT NULL, + perm_id code NOT NULL, + code code NOT NULL, + expe_id tech_id, + saty_id tech_id NOT NULL, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + modification_timestamp time_stamp DEFAULT now(), + pers_id_registerer tech_id NOT NULL, + del_id tech_id, + orig_del tech_id, + dbin_id tech_id, + space_id tech_id, + samp_id_part_of tech_id, + pers_id_modifier tech_id, + code_unique_check character varying(300), + subcode_unique_check character varying(300), + version integer DEFAULT 0, + CONSTRAINT samp_dbin_space_arc_ck CHECK ((((dbin_id IS NOT NULL) AND (space_id IS NULL)) OR ((dbin_id IS NULL) AND (space_id IS NOT NULL)))) +); + + +-- +-- Name: samples; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW samples AS + SELECT samples_all.id, samples_all.perm_id, samples_all.code, samples_all.expe_id, samples_all.saty_id, samples_all.registration_timestamp, samples_all.modification_timestamp, samples_all.pers_id_registerer, samples_all.pers_id_modifier, samples_all.del_id, samples_all.orig_del, samples_all.dbin_id, samples_all.space_id, samples_all.samp_id_part_of, samples_all.version FROM samples_all WHERE (samples_all.del_id IS NULL); + + +-- +-- Name: samples_deleted; Type: VIEW; Schema: public; Owner: - +-- + +CREATE VIEW samples_deleted AS + SELECT samples_all.id, samples_all.perm_id, samples_all.code, samples_all.expe_id, samples_all.saty_id, samples_all.registration_timestamp, samples_all.modification_timestamp, samples_all.pers_id_registerer, samples_all.pers_id_modifier, samples_all.del_id, samples_all.orig_del, samples_all.dbin_id, samples_all.space_id, samples_all.samp_id_part_of, samples_all.version FROM samples_all WHERE (samples_all.del_id IS NOT NULL); + + +-- +-- Name: script_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE script_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: script_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('script_id_seq', 2, true); + + +-- +-- Name: scripts; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE scripts ( + id tech_id NOT NULL, + dbin_id tech_id NOT NULL, + name character varying(200) NOT NULL, + script_type script_type NOT NULL, + description description_2000, + script text_value, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL, + entity_kind entity_kind, + plugin_type plugin_type DEFAULT 'JYTHON'::character varying NOT NULL, + is_available boolean_char DEFAULT true NOT NULL, + CONSTRAINT script_nn_ck CHECK ((((plugin_type)::text = 'PREDEPLOYED'::text) OR (script IS NOT NULL))) +); + + +-- +-- Name: space_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE space_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: space_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('space_id_seq', 3, true); + + +-- +-- Name: spaces; Type: TABLE; Schema: public; Owner: -; Tablespace: +-- + +CREATE TABLE spaces ( + id tech_id NOT NULL, + code code NOT NULL, + dbin_id tech_id NOT NULL, + description description_2000, + registration_timestamp time_stamp_dfl DEFAULT now() NOT NULL, + pers_id_registerer tech_id NOT NULL +); + + +-- +-- Name: stpt_id_seq; Type: SEQUENCE; Schema: public; Owner: - +-- + +CREATE SEQUENCE stpt_id_seq + START WITH 1 + INCREMENT BY 1 + NO MINVALUE + NO MAXVALUE + CACHE 1; + + +-- +-- Name: stpt_id_seq; Type: SEQUENCE SET; Schema: public; Owner: - +-- + +SELECT pg_catalog.setval('stpt_id_seq', 76, true); + + +-- +-- Data for Name: attachment_contents; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY attachment_contents (id, value) FROM stdin; +2 \\x70726f6a656374206174746163686d656e74 +3 \\x6578706572696d656e74206174746163686d656e74 +4 \\x73616d706c65206174746163686d656e74 +\. + + +-- +-- Data for Name: attachments; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY attachments (id, expe_id, samp_id, proj_id, exac_id, file_name, registration_timestamp, version, pers_id_registerer, title, description) FROM stdin; +2 \N \N 4 2 projectAttachment 2013-04-15 11:16:02.251138+02 1 3 TEST-PROJECT attachment \N +3 3 \N \N 3 experimentAttachment 2013-04-15 11:16:25.045499+02 1 3 TEST-EXPERIMENT attachment \N +4 \N 345 \N 4 sampleAttachment 2013-04-15 11:17:39.816868+02 1 3 TEST-SAMPLE-2 attachment \N +\. + + +-- +-- Data for Name: authorization_group_persons; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY authorization_group_persons (ag_id, pers_id) FROM stdin; +\. + + +-- +-- Data for Name: authorization_groups; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY authorization_groups (id, dbin_id, code, description, registration_timestamp, pers_id_registerer, modification_timestamp) FROM stdin; +\. + + +-- +-- Data for Name: controlled_vocabularies; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY controlled_vocabularies (id, code, description, registration_timestamp, pers_id_registerer, is_managed_internally, is_internal_namespace, dbin_id, modification_timestamp, is_chosen_from_list, source_uri) FROM stdin; +1 STORAGE_FORMAT The on-disk storage format of a data set 2013-04-12 10:04:52.629266+02 1 t t 1 2013-04-12 10:04:52.629266+02 t \N +2 AGILENT_KIT \N 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.622+02 t \N +3 ALIGNMENT_SOFTWARE If an alignment is requested, which software package should be use? 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.636+02 t \N +4 CASAVA_VERSION Post analyzing software 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.648+02 t \N +5 CLUSTER_GENERATION_KIT_VERSION Version of the Cluster Generation Kit 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.656+02 t \N +6 CLUSTER_STATION Cluster Station 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.669+02 t \N +7 CONTROL_LANE \N 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.679+02 t \N +8 END_TYPE Sequencing method 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.697+02 t \N +9 EXPERIMENT_DESIGN General Intent 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.706+02 t \N +10 INDEX1 Index 1 for Illumina Indexing 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.745+02 t \N +11 INDEX2 Index 2 for Illumina Dual Indexing 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.878+02 t \N +12 KIT Illumina Kit used for preparation 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.904+02 t \N +13 MACS_VERSION Used MACS version for Peak Calling 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.935+02 t \N +14 MISMATCH_IN_INDEX Mismatch in Index allowed 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.946+02 t \N +15 NANO_DROP Device for measuring the total amount of genetic material contained in the probe 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.959+02 t \N +16 NCBI_TAXONOMY \N 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:36.98+02 t http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$term$ +17 PIPELINE_VERSION With which pipeline version has the data been analyzed? 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:37.081+02 t \N +18 SAMPLE_TYPE Type of sample delivered by the customer 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:37.111+02 t \N +19 SBS_SEQUENCING_KIT_VERSION Version of the Sequencing by Synthesis (SBS) Kit 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:37.14+02 t \N +20 SEQUENCER Which Sequencer was used? 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:37.158+02 t \N +21 SEQUENCING_APPLICATION Type of experiment of the High Throughput Sequencing applications 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:37.171+02 t \N +22 YES_NO Just offers YES or NO 2013-04-12 10:04:56.658885+02 1 f f 1 2013-04-12 10:05:37.186+02 t \N +23 TREATMENT_TYPE Type of treatment of a biological sample. 2013-04-12 10:05:45.583358+02 1 f f 1 2013-04-12 10:05:46.075+02 t \N +24 PLATE_GEOMETRY The geometry or dimensions of a plate 2013-04-12 10:05:46.102969+02 1 t t 1 2013-04-12 10:05:51.838+02 t \N +25 TEST-VOCABULARY \N 2013-04-15 13:23:10.827645+02 3 f f 1 2013-04-24 14:50:08.727+02 t \N +\. + + +-- +-- Data for Name: controlled_vocabulary_terms; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY controlled_vocabulary_terms (id, code, registration_timestamp, covo_id, pers_id_registerer, label, description, ordinal, is_official) FROM stdin; +1 PROPRIETARY 2013-04-12 10:04:52.629266+02 1 1 \N \N 1 t +2 BDS_DIRECTORY 2013-04-12 10:04:52.629266+02 1 1 \N \N 2 t +3 AGILENT_DNA_KIT_1000 2013-04-12 10:04:56.658885+02 2 1 \N \N 1 t +4 AGILENT_HIGH_SENSITIVITY_DNA_KIT 2013-04-12 10:04:56.658885+02 2 1 \N \N 2 t +5 NOT_NEEDED 2013-04-12 10:04:56.658885+02 3 1 \N \N 1 t +6 ELAND 2013-04-12 10:04:56.658885+02 3 1 \N \N 2 t +7 MAQ 2013-04-12 10:04:56.658885+02 3 1 \N \N 3 t +8 BWA 2013-04-12 10:04:56.658885+02 3 1 \N \N 4 t +9 NOVOALIGN 2013-04-12 10:04:56.658885+02 3 1 \N \N 5 t +10 BOWTIE 2013-04-12 10:04:56.658885+02 3 1 \N \N 6 t +11 1.8 2013-04-12 10:04:56.658885+02 4 1 \N \N 1 t +12 1.7 2013-04-12 10:04:56.658885+02 4 1 \N \N 2 t +13 TRUSEQ_CBOT_HS_V3 2013-04-12 10:04:56.658885+02 5 1 TruSeq cBot-HS v3 \N 1 t +14 TRUSEQ_CBOT_HS_V2.5 2013-04-12 10:04:56.658885+02 5 1 TruSeq cBot-HS v2.5 \N 2 t +15 TRUSEQ_CBOT_GA_V2 2013-04-12 10:04:56.658885+02 5 1 TrueSeq cBot-GA v2 \N 3 t +16 TRUSEQ_CS_GA_V5 2013-04-12 10:04:56.658885+02 5 1 TrueSeq CS-GA v5 \N 4 t +17 V5 2013-04-12 10:04:56.658885+02 5 1 \N \N 5 t +18 V4 2013-04-12 10:04:56.658885+02 5 1 \N \N 6 t +19 V2 2013-04-12 10:04:56.658885+02 5 1 \N \N 7 t +20 CBOT 2013-04-12 10:04:56.658885+02 6 1 cBot \N 1 t +21 CBOT2 2013-04-12 10:04:56.658885+02 6 1 cBot2 Second cBot 2 t +22 1 2013-04-12 10:04:56.658885+02 7 1 \N \N 1 t +23 2 2013-04-12 10:04:56.658885+02 7 1 \N \N 2 t +24 3 2013-04-12 10:04:56.658885+02 7 1 \N \N 3 t +25 4 2013-04-12 10:04:56.658885+02 7 1 \N \N 4 t +26 5 2013-04-12 10:04:56.658885+02 7 1 \N \N 5 t +27 6 2013-04-12 10:04:56.658885+02 7 1 \N \N 6 t +28 7 2013-04-12 10:04:56.658885+02 7 1 \N \N 7 t +29 8 2013-04-12 10:04:56.658885+02 7 1 \N \N 8 t +30 NONE 2013-04-12 10:04:56.658885+02 7 1 \N \N 9 t +31 0 2013-04-12 10:04:56.658885+02 7 1 \N \N 10 t +32 SINGLE_READ 2013-04-12 10:04:56.658885+02 8 1 \N \N 1 t +33 PAIRED_END 2013-04-12 10:04:56.658885+02 8 1 \N \N 2 t +34 BINDING_SITE_IDENTIFICATION 2013-04-12 10:04:56.658885+02 9 1 Binding Site Identification \N 1 t +35 CHROMATIN_MARKS 2013-04-12 10:04:56.658885+02 9 1 Chromatin Marks \N 2 t +36 COMPARATIVE_GENOMIC_HYBRIDIZATION 2013-04-12 10:04:56.658885+02 9 1 Comparative Genomic Hybridization \N 3 t +37 DIFFERENTIAL_EXPRESSION 2013-04-12 10:04:56.658885+02 9 1 Differential Expression \N 4 t +38 DIFFERENTIAL_SPLICING 2013-04-12 10:04:56.658885+02 9 1 Differential Splicing \N 5 t +39 EXPRESSION 2013-04-12 10:04:56.658885+02 9 1 Expression \N 6 t +40 SEQUENCE_ENRICHMENT 2013-04-12 10:04:56.658885+02 9 1 Sequence Enrichment \N 7 t +41 TRANSCRIPT_IDENTIFICATION 2013-04-12 10:04:56.658885+02 9 1 Transcript Identification \N 8 t +42 OTHER 2013-04-12 10:04:56.658885+02 9 1 Other \N 9 t +43 NONE 2013-04-12 10:04:56.658885+02 10 1 None No Index 1 t +44 ATCACGA 2013-04-12 10:04:56.658885+02 10 1 Index1 ATCACGA Illumina, Nextera or Scriptseq 2 t +45 CGATGTA 2013-04-12 10:04:56.658885+02 10 1 Index2 CGATGTA Illumina, Nextera or Scriptseq 3 t +46 TTAGGCA 2013-04-12 10:04:56.658885+02 10 1 Index3 TTAGGCA Illumina, Nextera or Scriptseq 4 t +47 TGACCAA 2013-04-12 10:04:56.658885+02 10 1 Index4 TGACCAA Illumina, Nextera or Scriptseq 5 t +48 ACAGTGA 2013-04-12 10:04:56.658885+02 10 1 Index5 ACAGTGA Illumina, Nextera or Scriptseq 6 t +49 GCCAATA 2013-04-12 10:04:56.658885+02 10 1 Index6 GCCAATA Illumina, Nextera or Scriptseq 7 t +50 CAGATCA 2013-04-12 10:04:56.658885+02 10 1 Index7 CAGATCA Illumina, Nextera or Scriptseq 8 t +51 ACTTGAA 2013-04-12 10:04:56.658885+02 10 1 Index8 ACTTGAA Illumina, Nextera or Scriptseq 9 t +52 GATCAGA 2013-04-12 10:04:56.658885+02 10 1 Index9 GATCAGA Illumina, Nextera or Scriptseq 10 t +53 TAGCTTA 2013-04-12 10:04:56.658885+02 10 1 Index10 TAGCTTA Illumina, Nextera or Scriptseq 11 t +54 GGCTACA 2013-04-12 10:04:56.658885+02 10 1 Index11 GGCTACA Illumina, Nextera or Scriptseq 12 t +55 CTTGTAA 2013-04-12 10:04:56.658885+02 10 1 Index12 CTTGTAA Illumina, Nextera or Scriptseq 13 t +56 AGATACA 2013-04-12 10:04:56.658885+02 10 1 Index13 AGATAC Illumina, Nextera or Scriptseq 14 t +57 AGTTCCG 2013-04-12 10:04:56.658885+02 10 1 Index14 AGTTCCG Illumina, Nextera or Scriptseq 15 t +58 ATGTCAG 2013-04-12 10:04:56.658885+02 10 1 Index15 ATGTCAG Illumina, Nextera or Scriptseq 16 t +59 CCGTCCC 2013-04-12 10:04:56.658885+02 10 1 Index16 CCGTCCC Illumina, Nextera or Scriptseq 17 t +60 GTCCGCA 2013-04-12 10:04:56.658885+02 10 1 Index18 GTCCGCA Illumina, Nextera or Scriptseq 18 t +61 GTGAAAC 2013-04-12 10:04:56.658885+02 10 1 Index19 GTGAAAC Illumina, Nextera or Scriptseq 19 t +62 GTGGCCT 2013-04-12 10:04:56.658885+02 10 1 Index20 GTGGCCT Illumina, Nextera or Scriptseq 20 t +63 GTTTCGG 2013-04-12 10:04:56.658885+02 10 1 Index21 GTTTCGG Illumina, Nextera or Scriptseq 21 t +64 CGTACGT 2013-04-12 10:04:56.658885+02 10 1 Index22 CGTACGT Illumina, Nextera or Scriptseq 22 t +65 GAGTGGA 2013-04-12 10:04:56.658885+02 10 1 Index23 GAGTGGA Illumina, Nextera or Scriptseq 23 t +66 ACTGATA 2013-04-12 10:04:56.658885+02 10 1 Index25 ACTGATA Illumina, Nextera or Scriptseq 24 t +67 ATTCCTT 2013-04-12 10:04:56.658885+02 10 1 Index27 ATTCCTT Illumina, Nextera or Scriptseq 25 t +68 TAAGGCGA 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N701 TAAGGCGA Nextera DNA 26 t +69 CGTACTAG 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N702 CGTACTAG Nextera DNA 27 t +70 AGGCAGAA 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N703 AGGCAGAA Nextera DNA 28 t +71 TCCTGAGC 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N704 TCCTGAGC Nextera DNA 29 t +72 GGACTCCT 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N705 GGACTCCT Nextera DNA 30 t +73 TAGGCATG 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N706 TAGGCATG Nextera DNA 31 t +74 CTCTCTAC 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N707 CTCTCTAC Nextera DNA 32 t +75 CAGAGAGG 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N708 CAGAGAGG Nextera DNA 33 t +76 GCTACGCT 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N709 GCTACGCT Nextera DNA 34 t +77 CGAGGCTG 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N710 CGAGGCTG Nextera DNA 35 t +78 AAGAGGCA 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N711 AAGAGGCA Nextera DNA 36 t +79 GTAGAGGA 2013-04-12 10:04:56.658885+02 10 1 Index1 (i7) N712 GTAGAGGA Nextera DNA 37 t +80 AAGACTA 2013-04-12 10:04:56.658885+02 10 1 02 AAGACT \N 38 t +81 ACTTCAA 2013-04-12 10:04:56.658885+02 10 1 10 ACTTCA \N 39 t +82 AGGTTGA 2013-04-12 10:04:56.658885+02 10 1 17 AGGTTG \N 40 t +83 TTCGTCA 2013-04-12 10:04:56.658885+02 10 1 17 TTCGTCA \N 41 t +84 AGCATAA 2013-04-12 10:04:56.658885+02 10 1 20 AGCATAA \N 42 t +85 ATACGCA 2013-04-12 10:04:56.658885+02 10 1 20 ATACGC \N 43 t +86 CAGATGA 2013-04-12 10:04:56.658885+02 10 1 28 CAGATG \N 44 t +87 CCGAATA 2013-04-12 10:04:56.658885+02 10 1 34 CCGAAT \N 45 t +88 CGCTCGA 2013-04-12 10:04:56.658885+02 10 1 43 CGCTCG \N 46 t +89 CGTATTA 2013-04-12 10:04:56.658885+02 10 1 45 CGTATT \N 47 t +90 CCATGAA 2013-04-12 10:04:56.658885+02 10 1 50 CCATGAA \N 48 t +91 CTGACCA 2013-04-12 10:04:56.658885+02 10 1 50 CTGACC \N 49 t +92 GAAGCCA 2013-04-12 10:04:56.658885+02 10 1 52 GAAGCC \N 50 t +93 NOINDEX 2013-04-12 10:04:56.658885+02 10 1 \N \N 51 t +94 GCTGAAA 2013-04-12 10:04:56.658885+02 10 1 59 GCTGAA \N 52 t +95 GTCGCGA 2013-04-12 10:04:56.658885+02 10 1 64 GTCGCG \N 53 t +96 TAAGATA 2013-04-12 10:04:56.658885+02 10 1 65 TAAGAT \N 54 t +97 GCGCTGA 2013-04-12 10:04:56.658885+02 10 1 66 GCGCTGA \N 55 t +98 TATCGTA 2013-04-12 10:04:56.658885+02 10 1 66 TATCGT \N 56 t +99 TCCTACA 2013-04-12 10:04:56.658885+02 10 1 68 TCCTAC \N 57 t +100 TCTATAA 2013-04-12 10:04:56.658885+02 10 1 70 TCTATA \N 58 t +101 TTACTTA 2013-04-12 10:04:56.658885+02 10 1 74 TTACTT \N 59 t +102 TTCCGAA 2013-04-12 10:04:56.658885+02 10 1 75 TTCCGA \N 60 t +103 ATGTCAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 15 \N 61 t +104 CCGTCCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 16 \N 62 t +105 GTAGAGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 17 \N 63 t +106 GTGAAAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 19 \N 64 t +107 GTGGCCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 20 \N 65 t +108 GTTTCGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 21 \N 66 t +109 CGTACGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 22 \N 67 t +110 GGTAGCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 24 \N 68 t +111 ATGAGCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 26 \N 69 t +112 ATTCCTA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 27 \N 70 t +113 CAAAAGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 28 \N 71 t +114 CAACTAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 29 \N 72 t +115 CACCGGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 30 \N 73 t +116 CACGATA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 31 \N 74 t +117 CACTCAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 32 \N 75 t +118 CAGGCGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 33 \N 76 t +119 CATGGCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 34 \N 77 t +120 CATTTTA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 35 \N 78 t +121 CCAACAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 36 \N 79 t +122 CGGAATA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 37 \N 80 t +123 CTAGCTA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 38 \N 81 t +124 CTATACA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 39 \N 82 t +125 CTCAGAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 40 \N 83 t +126 GACGACA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 41 \N 84 t +127 TAATCGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 42 \N 85 t +128 TACAGCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 43 \N 86 t +129 TATAATA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 44 \N 87 t +130 TCATTCA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 45 \N 88 t +131 TCCCGAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 46 \N 89 t +132 TCGAAGA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 47 \N 90 t +133 TCGGCAA 2013-04-12 10:04:56.658885+02 10 1 DNA Adapter 48 \N 91 t +134 AGTCAAC 2013-04-12 10:04:56.658885+02 10 1 Index13 AGTCAAC \N 92 t +135 AATGCGA 2013-04-12 10:04:56.658885+02 10 1 Lib AATGCGA \N 93 t +136 NONE 2013-04-12 10:04:56.658885+02 11 1 None No Index 1 t +137 TAGATCGC 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N501 TAGATCGC Nextera DNA 2 t +138 CTCTCTAT 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N502 CTCTCTAT Nextera DNA 3 t +139 TATCCTCT 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N503 TATCCTCT Nextera DNA 4 t +140 AGAGTAGA 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N504 AGAGTAGA Nextera DNA 5 t +141 GTAAGGAG 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N505 GTAAGGAG Nextera DNA 6 t +142 ACTGCATA 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N506 ACTGCATA Nextera DNA 7 t +143 AAGGAGTA 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N507 AAGGAGTA Nextera DNA 8 t +144 CTAAGCCT 2013-04-12 10:04:56.658885+02 11 1 Index2 (i5) N508 CTAAGCCT Nextera DNA 9 t +145 NOINDEX 2013-04-12 10:04:56.658885+02 11 1 \N \N 10 t +146 CHIP_SEQ_SAMPLE_PREP 2013-04-12 10:04:56.658885+02 12 1 ChIP-Seq Sample Preparation Kit \N 1 t +147 NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1 2013-04-12 10:04:56.658885+02 12 1 NEB Genomic DNA Sample Preparation Kit \N 2 t +148 NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT 2013-04-12 10:04:56.658885+02 12 1 NEB_ChIP_Seq_Sample_Preparation_Kit \N 3 t +149 GENOMICDNA_SAMPLE_PREP 2013-04-12 10:04:56.658885+02 12 1 Illumina Genomic DNA Sample Preparation Kit \N 4 t +150 PAIRED_END_DNA_SAMPLE_PREP 2013-04-12 10:04:56.658885+02 12 1 Paired End DNA Sample Prep Oligo Kit \N 5 t +151 MRNA_SEQ_SAMPLE_PREP 2013-04-12 10:04:56.658885+02 12 1 mRNA-Seq Sample Preparation Kit \N 6 t +152 RIBOZERO_SCRIPTSEQ_MRNA-SEQ_KIT 2013-04-12 10:04:56.658885+02 12 1 RiboZero ScriptSeq mRNA-Seq_Epicentre-kit \N 7 t +153 POLYA_SCRIPTSEQ_MRNA-SEQ_KIT 2013-04-12 10:04:56.658885+02 12 1 PolyA(Beads) ScriptSeq mRNA-Seq_Epicentre-kit \N 8 t +154 NEXTERA_DNA_SAMPLE_PREP_KITS 2013-04-12 10:04:56.658885+02 12 1 Nextera Genomic DNA Sample Preparation Kit BufferLMW(Epicentre) \N 9 t +155 NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW 2013-04-12 10:04:56.658885+02 12 1 Nextera Genomic DNA Sample Preparation Kit BufferHMW(Epicentre) \N 10 t +156 AGILENT_SURESELECT_ENRICHMENTSYSTEM 2013-04-12 10:04:56.658885+02 12 1 Agilent_SureSelect_EnrichmentSystem \N 11 t +157 TRUSEQRNA_SAMPLE_PREP_KIT 2013-04-12 10:04:56.658885+02 12 1 TruSeq_RNA_SamplePrepKit_Illumina \N 12 t +158 TRUESEQ_CHIP_SAMPLE_PREP_KIT 2013-04-12 10:04:56.658885+02 12 1 \N \N 13 t +159 TRUSEQ_DNA_SAMPLE_PREP_KIT 2013-04-12 10:04:56.658885+02 12 1 TruSeq_DNA_SamplePrepKit_Illumina \N 14 t +160 NONE 2013-04-12 10:04:56.658885+02 12 1 None (Already prepared) \N 15 t +161 1.4.0RC2 2013-04-12 10:04:56.658885+02 13 1 macs14 1.4.0rc2 20110214 (Valentine) \N 1 t +162 1.3.7.1 2013-04-12 10:04:56.658885+02 13 1 macs 1.3.7.1 (Oktoberfest, bug fixed #1) \N 2 t +163 NONE 2013-04-12 10:04:56.658885+02 14 1 \N \N 1 t +164 ONE 2013-04-12 10:04:56.658885+02 14 1 \N \N 2 t +165 CONCND3300 2013-04-12 10:04:56.658885+02 15 1 Conc Nano Drop 3300 \N 1 t +166 CONCND1000 2013-04-12 10:04:56.658885+02 15 1 Conc Nano Drop 1000 \N 2 t +167 CONCND2000 2013-04-12 10:04:56.658885+02 15 1 Conc Nano Drop 2000 \N 3 t +168 10090 2013-04-12 10:04:56.658885+02 16 1 Mus musculus Genbank common name: house mouse\\ Inherited blast name: rodents 1 t +169 9606 2013-04-12 10:04:56.658885+02 16 1 Homo sapiens Genbank common name: human\\ Inherited blast name: primates 2 t +170 7227 2013-04-12 10:04:56.658885+02 16 1 Drosophila melanogaster Genbank common name: fruit fly\\ Inherited blast name: flies 3 t +171 6239 2013-04-12 10:04:56.658885+02 16 1 Caenorhabditis elegans Inherited blast name: nematodes 4 t +172 4932 2013-04-12 10:04:56.658885+02 16 1 Saccharomyces cerevisiae Genbank common name: baker's yeast\\ Inherited blast name: ascomycetes 5 t +173 10116 2013-04-12 10:04:56.658885+02 16 1 Rattus norvegicus Genbank common name: Norway rat\\ Inherited blast name: rodents 6 t +174 6669 2013-04-12 10:04:56.658885+02 16 1 Daphnia pulex Genbank common name: common water flea\\ Inherited blast name: crustaceans 7 t +175 562 2013-04-12 10:04:56.658885+02 16 1 Escherichia coli Inherited blast name: enterobacteria 8 t +176 623 2013-04-12 10:04:56.658885+02 16 1 Shigella flexneri Inherited blast name: enterobacteria 9 t +177 10847 2013-04-12 10:04:56.658885+02 16 1 Enterobacteria phage phiX174 Inherited blast name: viruses 10 t +178 190650 2013-04-12 10:04:56.658885+02 16 1 Caulobacter crescentus CB15 Inherited blast name: a-proteobacteria 11 t +179 8113 2013-04-12 10:04:56.658885+02 16 1 Cichlidae Genbank common name: cichlids\\ Inherited blast name: bony fishes 12 t +180 481459 2013-04-12 10:04:56.658885+02 16 1 Gasterosteus aculeatus aculeatus Genbank common name: three-spined stickleback\\ Inherited blast name: bony fishes 13 t +181 282301 2013-04-12 10:04:56.658885+02 16 1 Macrostomum lignano Inherited blast name: flatworms 14 t +182 99287 2013-04-12 10:04:56.658885+02 16 1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Inherited blast name: enterobacteria 15 t +183 4896 2013-04-12 10:04:56.658885+02 16 1 Schizosaccharomyces pombe Genbank common name: fission yeast\\ Inherited blast name: ascomycetes 16 t +184 4897 2013-04-12 10:04:56.658885+02 16 1 Schizosaccharomyces japonicus Inherited blast name: ascomycetes 17 t +185 7955 2013-04-12 10:04:56.658885+02 16 1 Danio rerio Genbank common name: zebrafish\\ Inherited blast name: bony fishes 18 t +186 3702 2013-04-12 10:04:56.658885+02 16 1 Arabidopsis thaliana Genbank common name: thale cress\\ Inherited blast name: eudicots 19 t +187 225322 2013-04-12 10:04:56.658885+02 16 1 Pasteuria ramosa Bacterium which infects Daphnia\\ Pasteuria ramosa Metchnikoff 1888 (Approved Lists 1980) emend. Starr et al. 1986\\ Ebert D, Rainey P, Embley TM, Scholz D. Development, life\\ cycle, ultrastructure and phylogenetic position of Pasteuria ramosa Metchnikoff 1888: rediscovery of an obligate \\ endoparasite of Daphnia magna Straus. Philos Trans R Soc \\ Lond Ser B. 1996;351:1689. 20 t +188 9913 2013-04-12 10:04:56.658885+02 16 1 Bos taurus Genbank common name: cattle\\ Inherited blast name: even-toed ungulates 21 t +189 9823 2013-04-12 10:04:56.658885+02 16 1 Sus scrofa Genbank common name: pig\\ Inherited blast name: even-toed ungulates 22 t +190 9940 2013-04-12 10:04:56.658885+02 16 1 Ovis aries Genbank common name: sheep\\ Inherited blast name: even-toed ungulates 23 t +191 9925 2013-04-12 10:04:56.658885+02 16 1 Capra hircus Genbank common name: goat\\ Inherited blast name: even-toed ungulates 24 t +192 8153 2013-04-12 10:04:56.658885+02 16 1 Haplochromis burtoni Common name: cichlid fish 25 t +193 61818 2013-04-12 10:04:56.658885+02 16 1 Amphilophus (nicaraguan) Common name: bony fish 26 t +194 35525 2013-04-12 10:04:56.658885+02 16 1 Daphnia Magna Common name: water flea 27 t +195 4081 2013-04-12 10:04:56.658885+02 16 1 Solanum lycopersicum (tomato) Common Name: tomato 28 t +196 13068 2013-04-12 10:04:56.658885+02 16 1 Forficula auricularia (earwig) Common name: earwig 29 t +197 3569 2013-04-12 10:04:56.658885+02 16 1 Dianthus Genbank common name: clove pink 30 t +198 3573 2013-04-12 10:04:56.658885+02 16 1 Silene Genbank common name: campions\\ Inherited blast name: eudicots 31 t +199 32644 2013-04-12 10:04:56.658885+02 16 1 unidentified Inherited blast name: unclassified 32 t +200 0000 2013-04-12 10:04:56.658885+02 16 1 OTHER \N 33 t +201 1.13.48 2013-04-12 10:04:56.658885+02 17 1 RTA 1.13.48 \N 1 t +202 1.12.4.2 2013-04-12 10:04:56.658885+02 17 1 RTA 1.12.4.2 (HiSeq 2000) Real Time Analysis in combination with HCS 1.4.8 2 t +203 1.12 2013-04-12 10:04:56.658885+02 17 1 RTA 1.12 Real Time Analysis 1.12 HiSeq 2000 3 t +204 1.9 2013-04-12 10:04:56.658885+02 17 1 RTA 1.9 (GA IIx) Real Time Analysis 1.9 4 t +205 RTA_1.8 2013-04-12 10:04:56.658885+02 17 1 RTA 1.8 Real Time Analysis 1.8 5 t +206 RTA_1.6 2013-04-12 10:04:56.658885+02 17 1 RTA 1.6 Real Time Analysis 1.6 6 t +207 RTA_1.5 2013-04-12 10:04:56.658885+02 17 1 RTA 1.5 \N 7 t +208 RTA_1.4.15.0 2013-04-12 10:04:56.658885+02 17 1 RTA 1.4.15.0 \N 8 t +209 1.5 2013-04-12 10:04:56.658885+02 17 1 \N \N 9 t +210 1.4 2013-04-12 10:04:56.658885+02 17 1 \N \N 10 t +211 1.3.2 2013-04-12 10:04:56.658885+02 17 1 \N \N 11 t +212 1.0 2013-04-12 10:04:56.658885+02 17 1 \N \N 12 t +213 PRE_1.0 2013-04-12 10:04:56.658885+02 17 1 \N Before Pipeline Version 1.0 13 t +214 NONE 2013-04-12 10:04:56.658885+02 17 1 \N \N 14 t +215 PROCESSED_DNA_LIBRARY 2013-04-12 10:04:56.658885+02 18 1 \N \N 1 t +216 POOLED_SAMPLE 2013-04-12 10:04:56.658885+02 18 1 \N \N 2 t +217 GENOMIC_DNA 2013-04-12 10:04:56.658885+02 18 1 \N \N 3 t +218 SMALL_RNA 2013-04-12 10:04:56.658885+02 18 1 \N \N 4 t +219 TOTAL_RNA 2013-04-12 10:04:56.658885+02 18 1 \N \N 5 t +220 CHIP 2013-04-12 10:04:56.658885+02 18 1 \N \N 6 t +221 VIRAL 2013-04-12 10:04:56.658885+02 18 1 \N \N 7 t +222 SYNTHETIC 2013-04-12 10:04:56.658885+02 18 1 \N \N 8 t +223 FRAGMENTED_GENOMIC_DNA 2013-04-12 10:04:56.658885+02 18 1 \N \N 9 t +224 MRNA 2013-04-12 10:04:56.658885+02 18 1 \N \N 10 t +225 OTHER 2013-04-12 10:04:56.658885+02 18 1 \N \N 11 t +226 BISULFITE_CHIP 2013-04-12 10:04:56.658885+02 18 1 \N \N 12 t +227 NON-GENOMIC 2013-04-12 10:04:56.658885+02 18 1 \N \N 13 t +228 BISULFITE_TREATED 2013-04-12 10:04:56.658885+02 18 1 \N \N 14 t +229 TRUSEQ_V5 2013-04-12 10:04:56.658885+02 19 1 TruSeq v5 \N 1 t +230 V5 2013-04-12 10:04:56.658885+02 19 1 \N \N 2 t +231 V4 2013-04-12 10:04:56.658885+02 19 1 \N \N 3 t +232 V3 2013-04-12 10:04:56.658885+02 19 1 \N \N 4 t +233 SBS_HS_V3 2013-04-12 10:04:56.658885+02 19 1 TruSeq SBS HS v3 \N 5 t +234 M00721 2013-04-12 10:04:56.658885+02 20 1 MiSeq \N 1 t +235 SN792 2013-04-12 10:04:56.658885+02 20 1 HiSeq 2000 \N 2 t +236 SMALL_RNA_SEQ 2013-04-12 10:04:56.658885+02 21 1 \N \N 1 t +237 RNA_SEQ 2013-04-12 10:04:56.658885+02 21 1 \N \N 2 t +238 GENOMIC_DNA_SEQ 2013-04-12 10:04:56.658885+02 21 1 \N \N 3 t +239 CHIP_SEQ 2013-04-12 10:04:56.658885+02 21 1 \N \N 4 t +240 YES 2013-04-12 10:04:56.658885+02 22 1 \N \N 1 t +241 NO 2013-04-12 10:04:56.658885+02 22 1 \N \N 2 t +242 384_WELLS_16X24 2013-04-12 10:05:46.102969+02 24 1 384 Wells, 16x24 \N 1 t +243 96_WELLS_8X12 2013-04-12 10:05:46.102969+02 24 1 96 Wells, 8x12 \N 2 t +244 1536_WELLS_32X48 2013-04-12 10:05:46.102969+02 24 1 1536 Wells, 32x48 \N 3 t +245 24_WELLS_4X6 2013-04-12 10:05:46.102969+02 24 1 24 Wells, 4x6 \N 4 t +246 48_WELLS_6X8 2013-04-12 10:05:46.102969+02 24 1 48 Wells, 6x8 \N 5 t +247 TEST-TERM-1 2013-04-15 13:23:10.827645+02 25 3 \N \N 1 t +248 TEST-TERM-2 2013-04-15 13:23:10.827645+02 25 3 \N \N 2 t +249 0.3522190456278622 2013-04-15 13:24:02.679696+02 25 4 \N \N 3 f +250 0.2380473092198372 2013-04-15 14:02:04.428553+02 25 4 \N \N 4 f +251 0.057321036932989955 2013-04-15 14:04:12.060597+02 25 4 \N \N 5 f +252 0.6364885766524822 2013-04-15 15:01:45.242993+02 25 4 \N \N 6 f +253 0.689466007752344 2013-04-15 15:01:49.353066+02 25 4 \N \N 7 f +254 0.9391456269659102 2013-04-15 15:28:38.356746+02 25 4 \N \N 8 f +255 0.6615442088805139 2013-04-15 16:31:20.054321+02 25 4 \N \N 9 f +256 0.48705513565801084 2013-04-15 16:46:03.974919+02 25 4 \N \N 10 f +257 0.011886864202097058 2013-04-15 17:03:30.779957+02 25 4 \N \N 11 f +258 0.587830102769658 2013-04-16 09:17:48.523809+02 25 4 \N \N 12 f +259 0.9781987806782126 2013-04-16 11:56:49.600853+02 25 4 \N \N 13 f +260 0.7866033136378974 2013-04-16 12:03:58.336716+02 25 4 \N \N 14 f +261 0.24776290077716112 2013-04-16 14:39:10.079051+02 25 4 \N \N 15 f +262 0.7898846585303545 2013-04-16 14:43:22.192973+02 25 4 \N \N 16 f +263 0.17502188798971474 2013-04-17 10:06:39.90537+02 25 4 \N \N 17 f +264 0.00777794756140493 2013-04-24 14:50:08.727+02 25 4 \N \N 18 f +\. + + +-- +-- Data for Name: core_plugins; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY core_plugins (id, name, version, registration_timestamp, master_reg_script) FROM stdin; +1 illumina-ngs 2 2013-04-12 10:04:56.658885+02 # -*- coding: utf-8 -*-\nimport ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType\n\nprint ("Importing Master Data...")\n\ntr = service.transaction()\n\n\nfile_type_FASTQ_PHRED_64 = tr.getOrCreateNewFileFormatType('FASTQ_PHRED_64')\nfile_type_FASTQ_PHRED_64.setDescription('FastQ Format with PHRED+64 quality values (as deliverd by Illumina GA Pipeline >= 1.3)')\n \nprint "Imported 7 File Formats" \nvocabulary_AGILENT_KIT = tr.getOrCreateNewVocabulary('AGILENT_KIT')\nvocabulary_AGILENT_KIT.setDescription(None)\nvocabulary_AGILENT_KIT.setUrlTemplate(None)\nvocabulary_AGILENT_KIT.setManagedInternally(False)\nvocabulary_AGILENT_KIT.setInternalNamespace(False)\nvocabulary_AGILENT_KIT.setChosenFromList(True)\n \nvocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000 = tr.createNewVocabularyTerm('AGILENT_DNA_KIT_1000')\nvocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setDescription(None)\nvocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setLabel(None)\nvocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000.setOrdinal(1)\nvocabulary_AGILENT_KIT.addTerm(vocabulary_term_AGILENT_KIT_AGILENT_DNA_KIT_1000)\n \nvocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT = tr.createNewVocabularyTerm('AGILENT_HIGH_SENSITIVITY_DNA_KIT')\nvocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setDescription(None)\nvocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setLabel(None)\nvocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT.setOrdinal(2)\nvocabulary_AGILENT_KIT.addTerm(vocabulary_term_AGILENT_KIT_AGILENT_HIGH_SENSITIVITY_DNA_KIT)\n \nvocabulary_ALIGNMENT_SOFTWARE = tr.getOrCreateNewVocabulary('ALIGNMENT_SOFTWARE')\nvocabulary_ALIGNMENT_SOFTWARE.setDescription('If an alignment is requested, which software package should be use?')\nvocabulary_ALIGNMENT_SOFTWARE.setUrlTemplate(None)\nvocabulary_ALIGNMENT_SOFTWARE.setManagedInternally(False)\nvocabulary_ALIGNMENT_SOFTWARE.setInternalNamespace(False)\nvocabulary_ALIGNMENT_SOFTWARE.setChosenFromList(True)\n \nvocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED = tr.createNewVocabularyTerm('NOT_NEEDED')\nvocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setDescription(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setLabel(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED.setOrdinal(1)\nvocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_NOT_NEEDED)\n \nvocabulary_term_ALIGNMENT_SOFTWARE_ELAND = tr.createNewVocabularyTerm('ELAND')\nvocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setDescription(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setLabel(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_ELAND.setOrdinal(2)\nvocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_ELAND)\n \nvocabulary_term_ALIGNMENT_SOFTWARE_MAQ = tr.createNewVocabularyTerm('MAQ')\nvocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setDescription(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setLabel(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_MAQ.setOrdinal(3)\nvocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_MAQ)\n \nvocabulary_term_ALIGNMENT_SOFTWARE_BWA = tr.createNewVocabularyTerm('BWA')\nvocabulary_term_ALIGNMENT_SOFTWARE_BWA.setDescription(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_BWA.setLabel(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_BWA.setOrdinal(4)\nvocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_BWA)\n \nvocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN = tr.createNewVocabularyTerm('NOVOALIGN')\nvocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setDescription(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setLabel(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN.setOrdinal(6)\nvocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_NOVOALIGN)\n \nvocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE = tr.createNewVocabularyTerm('BOWTIE')\nvocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setDescription(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setLabel(None)\nvocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE.setOrdinal(7)\nvocabulary_ALIGNMENT_SOFTWARE.addTerm(vocabulary_term_ALIGNMENT_SOFTWARE_BOWTIE)\n \nvocabulary_CASAVA_VERSION = tr.getOrCreateNewVocabulary('CASAVA_VERSION')\nvocabulary_CASAVA_VERSION.setDescription('Post analyzing software')\nvocabulary_CASAVA_VERSION.setUrlTemplate(None)\nvocabulary_CASAVA_VERSION.setManagedInternally(False)\nvocabulary_CASAVA_VERSION.setInternalNamespace(False)\nvocabulary_CASAVA_VERSION.setChosenFromList(True)\n \nvocabulary_term_CASAVA_VERSION_18 = tr.createNewVocabularyTerm('1.8')\nvocabulary_term_CASAVA_VERSION_18.setDescription(None)\nvocabulary_term_CASAVA_VERSION_18.setLabel(None)\nvocabulary_term_CASAVA_VERSION_18.setOrdinal(1)\nvocabulary_CASAVA_VERSION.addTerm(vocabulary_term_CASAVA_VERSION_18)\n \nvocabulary_term_CASAVA_VERSION_17 = tr.createNewVocabularyTerm('1.7')\nvocabulary_term_CASAVA_VERSION_17.setDescription(None)\nvocabulary_term_CASAVA_VERSION_17.setLabel(None)\nvocabulary_term_CASAVA_VERSION_17.setOrdinal(2)\nvocabulary_CASAVA_VERSION.addTerm(vocabulary_term_CASAVA_VERSION_17)\n \nvocabulary_CLUSTER_GENERATION_KIT_VERSION = tr.getOrCreateNewVocabulary('CLUSTER_GENERATION_KIT_VERSION')\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.setDescription('Version of the Cluster Generation Kit')\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.setUrlTemplate(None)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.setManagedInternally(False)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.setInternalNamespace(False)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.setChosenFromList(True)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_HS_V3')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setLabel('TruSeq cBot-HS v3')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3.setOrdinal(1)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V3)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_HS_V2.5')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setLabel('TruSeq cBot-HS v2.5')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25.setOrdinal(2)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_HS_V25)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2 = tr.createNewVocabularyTerm('TRUSEQ_CBOT_GA_V2')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setLabel('TrueSeq cBot-GA v2')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2.setOrdinal(3)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CBOT_GA_V2)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5 = tr.createNewVocabularyTerm('TRUSEQ_CS_GA_V5')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setLabel('TrueSeq CS-GA v5')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5.setOrdinal(4)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_TRUSEQ_CS_GA_V5)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5 = tr.createNewVocabularyTerm('V5')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setLabel(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5.setOrdinal(5)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V5)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4 = tr.createNewVocabularyTerm('V4')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setLabel(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4.setOrdinal(6)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V4)\n \nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2 = tr.createNewVocabularyTerm('V2')\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setDescription(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setLabel(None)\nvocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2.setOrdinal(7)\nvocabulary_CLUSTER_GENERATION_KIT_VERSION.addTerm(vocabulary_term_CLUSTER_GENERATION_KIT_VERSION_V2)\n \nvocabulary_CLUSTER_STATION = tr.getOrCreateNewVocabulary('CLUSTER_STATION')\nvocabulary_CLUSTER_STATION.setDescription('Cluster Station')\nvocabulary_CLUSTER_STATION.setUrlTemplate(None)\nvocabulary_CLUSTER_STATION.setManagedInternally(False)\nvocabulary_CLUSTER_STATION.setInternalNamespace(False)\nvocabulary_CLUSTER_STATION.setChosenFromList(True)\n \nvocabulary_term_CLUSTER_STATION_CBOT = tr.createNewVocabularyTerm('CBOT')\nvocabulary_term_CLUSTER_STATION_CBOT.setDescription(None)\nvocabulary_term_CLUSTER_STATION_CBOT.setLabel('cBot')\nvocabulary_term_CLUSTER_STATION_CBOT.setOrdinal(1)\nvocabulary_CLUSTER_STATION.addTerm(vocabulary_term_CLUSTER_STATION_CBOT)\n \nvocabulary_term_CLUSTER_STATION_CBOT2 = tr.createNewVocabularyTerm('CBOT2')\nvocabulary_term_CLUSTER_STATION_CBOT2.setDescription('Second cBot')\nvocabulary_term_CLUSTER_STATION_CBOT2.setLabel('cBot2')\nvocabulary_term_CLUSTER_STATION_CBOT2.setOrdinal(2)\nvocabulary_CLUSTER_STATION.addTerm(vocabulary_term_CLUSTER_STATION_CBOT2)\n \nvocabulary_CONTROL_LANE = tr.getOrCreateNewVocabulary('CONTROL_LANE')\nvocabulary_CONTROL_LANE.setDescription(None)\nvocabulary_CONTROL_LANE.setUrlTemplate(None)\nvocabulary_CONTROL_LANE.setManagedInternally(False)\nvocabulary_CONTROL_LANE.setInternalNamespace(False)\nvocabulary_CONTROL_LANE.setChosenFromList(True)\n \nvocabulary_term_CONTROL_LANE_1 = tr.createNewVocabularyTerm('1')\nvocabulary_term_CONTROL_LANE_1.setDescription(None)\nvocabulary_term_CONTROL_LANE_1.setLabel(None)\nvocabulary_term_CONTROL_LANE_1.setOrdinal(1)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_1)\n \nvocabulary_term_CONTROL_LANE_2 = tr.createNewVocabularyTerm('2')\nvocabulary_term_CONTROL_LANE_2.setDescription(None)\nvocabulary_term_CONTROL_LANE_2.setLabel(None)\nvocabulary_term_CONTROL_LANE_2.setOrdinal(2)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_2)\n \nvocabulary_term_CONTROL_LANE_3 = tr.createNewVocabularyTerm('3')\nvocabulary_term_CONTROL_LANE_3.setDescription(None)\nvocabulary_term_CONTROL_LANE_3.setLabel(None)\nvocabulary_term_CONTROL_LANE_3.setOrdinal(3)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_3)\n \nvocabulary_term_CONTROL_LANE_4 = tr.createNewVocabularyTerm('4')\nvocabulary_term_CONTROL_LANE_4.setDescription(None)\nvocabulary_term_CONTROL_LANE_4.setLabel(None)\nvocabulary_term_CONTROL_LANE_4.setOrdinal(4)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_4)\n \nvocabulary_term_CONTROL_LANE_5 = tr.createNewVocabularyTerm('5')\nvocabulary_term_CONTROL_LANE_5.setDescription(None)\nvocabulary_term_CONTROL_LANE_5.setLabel(None)\nvocabulary_term_CONTROL_LANE_5.setOrdinal(5)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_5)\n \nvocabulary_term_CONTROL_LANE_6 = tr.createNewVocabularyTerm('6')\nvocabulary_term_CONTROL_LANE_6.setDescription(None)\nvocabulary_term_CONTROL_LANE_6.setLabel(None)\nvocabulary_term_CONTROL_LANE_6.setOrdinal(6)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_6)\n \nvocabulary_term_CONTROL_LANE_7 = tr.createNewVocabularyTerm('7')\nvocabulary_term_CONTROL_LANE_7.setDescription(None)\nvocabulary_term_CONTROL_LANE_7.setLabel(None)\nvocabulary_term_CONTROL_LANE_7.setOrdinal(7)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_7)\n \nvocabulary_term_CONTROL_LANE_8 = tr.createNewVocabularyTerm('8')\nvocabulary_term_CONTROL_LANE_8.setDescription(None)\nvocabulary_term_CONTROL_LANE_8.setLabel(None)\nvocabulary_term_CONTROL_LANE_8.setOrdinal(8)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_8)\n \nvocabulary_term_CONTROL_LANE_NONE = tr.createNewVocabularyTerm('NONE')\nvocabulary_term_CONTROL_LANE_NONE.setDescription(None)\nvocabulary_term_CONTROL_LANE_NONE.setLabel(None)\nvocabulary_term_CONTROL_LANE_NONE.setOrdinal(9)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_NONE)\n \nvocabulary_term_CONTROL_LANE_0 = tr.createNewVocabularyTerm('0')\nvocabulary_term_CONTROL_LANE_0.setDescription(None)\nvocabulary_term_CONTROL_LANE_0.setLabel(None)\nvocabulary_term_CONTROL_LANE_0.setOrdinal(10)\nvocabulary_CONTROL_LANE.addTerm(vocabulary_term_CONTROL_LANE_0)\n \nvocabulary_END_TYPE = tr.getOrCreateNewVocabulary('END_TYPE')\nvocabulary_END_TYPE.setDescription('Sequencing method')\nvocabulary_END_TYPE.setUrlTemplate(None)\nvocabulary_END_TYPE.setManagedInternally(False)\nvocabulary_END_TYPE.setInternalNamespace(False)\nvocabulary_END_TYPE.setChosenFromList(True)\n \nvocabulary_term_END_TYPE_SINGLE_READ = tr.createNewVocabularyTerm('SINGLE_READ')\nvocabulary_term_END_TYPE_SINGLE_READ.setDescription(None)\nvocabulary_term_END_TYPE_SINGLE_READ.setLabel(None)\nvocabulary_term_END_TYPE_SINGLE_READ.setOrdinal(1)\nvocabulary_END_TYPE.addTerm(vocabulary_term_END_TYPE_SINGLE_READ)\n \nvocabulary_term_END_TYPE_PAIRED_END = tr.createNewVocabularyTerm('PAIRED_END')\nvocabulary_term_END_TYPE_PAIRED_END.setDescription(None)\nvocabulary_term_END_TYPE_PAIRED_END.setLabel(None)\nvocabulary_term_END_TYPE_PAIRED_END.setOrdinal(2)\nvocabulary_END_TYPE.addTerm(vocabulary_term_END_TYPE_PAIRED_END)\n \nvocabulary_EXPERIMENT_DESIGN = tr.getOrCreateNewVocabulary('EXPERIMENT_DESIGN')\nvocabulary_EXPERIMENT_DESIGN.setDescription('General Intent')\nvocabulary_EXPERIMENT_DESIGN.setUrlTemplate(None)\nvocabulary_EXPERIMENT_DESIGN.setManagedInternally(False)\nvocabulary_EXPERIMENT_DESIGN.setInternalNamespace(False)\nvocabulary_EXPERIMENT_DESIGN.setChosenFromList(True)\n \nvocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION = tr.createNewVocabularyTerm('BINDING_SITE_IDENTIFICATION')\nvocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setLabel('Binding Site Identification')\nvocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION.setOrdinal(1)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_BINDING_SITE_IDENTIFICATION)\n \nvocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS = tr.createNewVocabularyTerm('CHROMATIN_MARKS')\nvocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setLabel('Chromatin Marks')\nvocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS.setOrdinal(2)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_CHROMATIN_MARKS)\n \nvocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION = tr.createNewVocabularyTerm('COMPARATIVE_GENOMIC_HYBRIDIZATION')\nvocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setLabel('Comparative Genomic Hybridization')\nvocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION.setOrdinal(3)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_COMPARATIVE_GENOMIC_HYBRIDIZATION)\n \nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION = tr.createNewVocabularyTerm('DIFFERENTIAL_EXPRESSION')\nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setLabel('Differential Expression')\nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION.setOrdinal(4)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_EXPRESSION)\n \nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING = tr.createNewVocabularyTerm('DIFFERENTIAL_SPLICING')\nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setLabel('Differential Splicing')\nvocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING.setOrdinal(5)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_DIFFERENTIAL_SPLICING)\n \nvocabulary_term_EXPERIMENT_DESIGN_EXPRESSION = tr.createNewVocabularyTerm('EXPRESSION')\nvocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setLabel('Expression')\nvocabulary_term_EXPERIMENT_DESIGN_EXPRESSION.setOrdinal(6)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_EXPRESSION)\n \nvocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT = tr.createNewVocabularyTerm('SEQUENCE_ENRICHMENT')\nvocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setLabel('Sequence Enrichment')\nvocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT.setOrdinal(7)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_SEQUENCE_ENRICHMENT)\n \nvocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION = tr.createNewVocabularyTerm('TRANSCRIPT_IDENTIFICATION')\nvocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setLabel('Transcript Identification')\nvocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION.setOrdinal(8)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_TRANSCRIPT_IDENTIFICATION)\n \nvocabulary_term_EXPERIMENT_DESIGN_OTHER = tr.createNewVocabularyTerm('OTHER')\nvocabulary_term_EXPERIMENT_DESIGN_OTHER.setDescription(None)\nvocabulary_term_EXPERIMENT_DESIGN_OTHER.setLabel('Other')\nvocabulary_term_EXPERIMENT_DESIGN_OTHER.setOrdinal(9)\nvocabulary_EXPERIMENT_DESIGN.addTerm(vocabulary_term_EXPERIMENT_DESIGN_OTHER)\n \nvocabulary_INDEX1 = tr.getOrCreateNewVocabulary('INDEX1')\nvocabulary_INDEX1.setDescription('Index 1 for Illumina Indexing')\nvocabulary_INDEX1.setUrlTemplate(None)\nvocabulary_INDEX1.setManagedInternally(False)\nvocabulary_INDEX1.setInternalNamespace(False)\nvocabulary_INDEX1.setChosenFromList(True)\n \nvocabulary_term_INDEX1_NONE = tr.createNewVocabularyTerm('NONE')\nvocabulary_term_INDEX1_NONE.setDescription('No Index')\nvocabulary_term_INDEX1_NONE.setLabel(' None')\nvocabulary_term_INDEX1_NONE.setOrdinal(1)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_NONE)\n \nvocabulary_term_INDEX1_ATCACGA = tr.createNewVocabularyTerm('ATCACGA')\nvocabulary_term_INDEX1_ATCACGA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_ATCACGA.setLabel('Index1 ATCACGA')\nvocabulary_term_INDEX1_ATCACGA.setOrdinal(2)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATCACGA)\n \nvocabulary_term_INDEX1_CGATGTA = tr.createNewVocabularyTerm('CGATGTA')\nvocabulary_term_INDEX1_CGATGTA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_CGATGTA.setLabel('Index2 CGATGTA')\nvocabulary_term_INDEX1_CGATGTA.setOrdinal(3)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGATGTA)\n \nvocabulary_term_INDEX1_TTAGGCA = tr.createNewVocabularyTerm('TTAGGCA')\nvocabulary_term_INDEX1_TTAGGCA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_TTAGGCA.setLabel('Index3 TTAGGCA')\nvocabulary_term_INDEX1_TTAGGCA.setOrdinal(4)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTAGGCA)\n \nvocabulary_term_INDEX1_TGACCAA = tr.createNewVocabularyTerm('TGACCAA')\nvocabulary_term_INDEX1_TGACCAA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_TGACCAA.setLabel('Index4 TGACCAA')\nvocabulary_term_INDEX1_TGACCAA.setOrdinal(5)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TGACCAA)\n \nvocabulary_term_INDEX1_ACAGTGA = tr.createNewVocabularyTerm('ACAGTGA')\nvocabulary_term_INDEX1_ACAGTGA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_ACAGTGA.setLabel('Index5 ACAGTGA')\nvocabulary_term_INDEX1_ACAGTGA.setOrdinal(6)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACAGTGA)\n \nvocabulary_term_INDEX1_GCCAATA = tr.createNewVocabularyTerm('GCCAATA')\nvocabulary_term_INDEX1_GCCAATA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GCCAATA.setLabel('Index6 GCCAATA')\nvocabulary_term_INDEX1_GCCAATA.setOrdinal(7)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCCAATA)\n \nvocabulary_term_INDEX1_CAGATCA = tr.createNewVocabularyTerm('CAGATCA')\nvocabulary_term_INDEX1_CAGATCA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_CAGATCA.setLabel('Index7 CAGATCA')\nvocabulary_term_INDEX1_CAGATCA.setOrdinal(8)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGATCA)\n \nvocabulary_term_INDEX1_ACTTGAA = tr.createNewVocabularyTerm('ACTTGAA')\nvocabulary_term_INDEX1_ACTTGAA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_ACTTGAA.setLabel('Index8 ACTTGAA')\nvocabulary_term_INDEX1_ACTTGAA.setOrdinal(9)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTTGAA)\n \nvocabulary_term_INDEX1_GATCAGA = tr.createNewVocabularyTerm('GATCAGA')\nvocabulary_term_INDEX1_GATCAGA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GATCAGA.setLabel('Index9 GATCAGA')\nvocabulary_term_INDEX1_GATCAGA.setOrdinal(10)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GATCAGA)\n \nvocabulary_term_INDEX1_TAGCTTA = tr.createNewVocabularyTerm('TAGCTTA')\nvocabulary_term_INDEX1_TAGCTTA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_TAGCTTA.setLabel('Index10 TAGCTTA')\nvocabulary_term_INDEX1_TAGCTTA.setOrdinal(11)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAGCTTA)\n \nvocabulary_term_INDEX1_GGCTACA = tr.createNewVocabularyTerm('GGCTACA')\nvocabulary_term_INDEX1_GGCTACA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GGCTACA.setLabel('Index11 GGCTACA')\nvocabulary_term_INDEX1_GGCTACA.setOrdinal(12)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGCTACA)\n \nvocabulary_term_INDEX1_CTTGTAA = tr.createNewVocabularyTerm('CTTGTAA')\nvocabulary_term_INDEX1_CTTGTAA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_CTTGTAA.setLabel('Index12 CTTGTAA')\nvocabulary_term_INDEX1_CTTGTAA.setOrdinal(13)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTTGTAA)\n \nvocabulary_term_INDEX1_AGATACA = tr.createNewVocabularyTerm('AGATACA')\nvocabulary_term_INDEX1_AGATACA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_AGATACA.setLabel('Index13 AGATAC')\nvocabulary_term_INDEX1_AGATACA.setOrdinal(14)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGATACA)\n \nvocabulary_term_INDEX1_AGTTCCG = tr.createNewVocabularyTerm('AGTTCCG')\nvocabulary_term_INDEX1_AGTTCCG.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_AGTTCCG.setLabel('Index14 AGTTCCG')\nvocabulary_term_INDEX1_AGTTCCG.setOrdinal(15)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGTTCCG)\n \nvocabulary_term_INDEX1_ATGTCAG = tr.createNewVocabularyTerm('ATGTCAG')\nvocabulary_term_INDEX1_ATGTCAG.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_ATGTCAG.setLabel('Index15 ATGTCAG')\nvocabulary_term_INDEX1_ATGTCAG.setOrdinal(16)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGTCAG)\n \nvocabulary_term_INDEX1_CCGTCCC = tr.createNewVocabularyTerm('CCGTCCC')\nvocabulary_term_INDEX1_CCGTCCC.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_CCGTCCC.setLabel('Index16 CCGTCCC')\nvocabulary_term_INDEX1_CCGTCCC.setOrdinal(17)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGTCCC)\n \nvocabulary_term_INDEX1_GTCCGCA = tr.createNewVocabularyTerm('GTCCGCA')\nvocabulary_term_INDEX1_GTCCGCA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GTCCGCA.setLabel('Index18 GTCCGCA')\nvocabulary_term_INDEX1_GTCCGCA.setOrdinal(18)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTCCGCA)\n \nvocabulary_term_INDEX1_GTGAAAC = tr.createNewVocabularyTerm('GTGAAAC')\nvocabulary_term_INDEX1_GTGAAAC.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GTGAAAC.setLabel('Index19 GTGAAAC')\nvocabulary_term_INDEX1_GTGAAAC.setOrdinal(19)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGAAAC)\n \nvocabulary_term_INDEX1_GTGGCCT = tr.createNewVocabularyTerm('GTGGCCT')\nvocabulary_term_INDEX1_GTGGCCT.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GTGGCCT.setLabel('Index20 GTGGCCT')\nvocabulary_term_INDEX1_GTGGCCT.setOrdinal(20)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGGCCT)\n \nvocabulary_term_INDEX1_GTTTCGG = tr.createNewVocabularyTerm('GTTTCGG')\nvocabulary_term_INDEX1_GTTTCGG.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GTTTCGG.setLabel('Index21 GTTTCGG')\nvocabulary_term_INDEX1_GTTTCGG.setOrdinal(21)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTTTCGG)\n \nvocabulary_term_INDEX1_CGTACGT = tr.createNewVocabularyTerm('CGTACGT')\nvocabulary_term_INDEX1_CGTACGT.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_CGTACGT.setLabel('Index22 CGTACGT')\nvocabulary_term_INDEX1_CGTACGT.setOrdinal(22)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACGT)\n \nvocabulary_term_INDEX1_GAGTGGA = tr.createNewVocabularyTerm('GAGTGGA')\nvocabulary_term_INDEX1_GAGTGGA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_GAGTGGA.setLabel('Index23 GAGTGGA')\nvocabulary_term_INDEX1_GAGTGGA.setOrdinal(23)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GAGTGGA)\n \nvocabulary_term_INDEX1_ACTGATA = tr.createNewVocabularyTerm('ACTGATA')\nvocabulary_term_INDEX1_ACTGATA.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_ACTGATA.setLabel('Index25 ACTGATA')\nvocabulary_term_INDEX1_ACTGATA.setOrdinal(24)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTGATA)\n \nvocabulary_term_INDEX1_ATTCCTT = tr.createNewVocabularyTerm('ATTCCTT')\nvocabulary_term_INDEX1_ATTCCTT.setDescription('Illumina, Nextera or Scriptseq')\nvocabulary_term_INDEX1_ATTCCTT.setLabel('Index27 ATTCCTT')\nvocabulary_term_INDEX1_ATTCCTT.setOrdinal(25)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATTCCTT)\n \nvocabulary_term_INDEX1_TAAGGCGA = tr.createNewVocabularyTerm('TAAGGCGA')\nvocabulary_term_INDEX1_TAAGGCGA.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_TAAGGCGA.setLabel('Index1 (i7) N701 TAAGGCGA')\nvocabulary_term_INDEX1_TAAGGCGA.setOrdinal(26)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAAGGCGA)\n \nvocabulary_term_INDEX1_CGTACTAG = tr.createNewVocabularyTerm('CGTACTAG')\nvocabulary_term_INDEX1_CGTACTAG.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_CGTACTAG.setLabel('Index1 (i7) N702 CGTACTAG')\nvocabulary_term_INDEX1_CGTACTAG.setOrdinal(27)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACTAG)\n \nvocabulary_term_INDEX1_AGGCAGAA = tr.createNewVocabularyTerm('AGGCAGAA')\nvocabulary_term_INDEX1_AGGCAGAA.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_AGGCAGAA.setLabel('Index1 (i7) N703 AGGCAGAA')\nvocabulary_term_INDEX1_AGGCAGAA.setOrdinal(28)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGGCAGAA)\n \nvocabulary_term_INDEX1_TCCTGAGC = tr.createNewVocabularyTerm('TCCTGAGC')\nvocabulary_term_INDEX1_TCCTGAGC.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_TCCTGAGC.setLabel('Index1 (i7) N704 TCCTGAGC')\nvocabulary_term_INDEX1_TCCTGAGC.setOrdinal(29)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCTGAGC)\n \nvocabulary_term_INDEX1_GGACTCCT = tr.createNewVocabularyTerm('GGACTCCT')\nvocabulary_term_INDEX1_GGACTCCT.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_GGACTCCT.setLabel('Index1 (i7) N705 GGACTCCT')\nvocabulary_term_INDEX1_GGACTCCT.setOrdinal(30)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGACTCCT)\n \nvocabulary_term_INDEX1_TAGGCATG = tr.createNewVocabularyTerm('TAGGCATG')\nvocabulary_term_INDEX1_TAGGCATG.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_TAGGCATG.setLabel('Index1 (i7) N706 TAGGCATG')\nvocabulary_term_INDEX1_TAGGCATG.setOrdinal(31)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAGGCATG)\n \nvocabulary_term_INDEX1_CTCTCTAC = tr.createNewVocabularyTerm('CTCTCTAC')\nvocabulary_term_INDEX1_CTCTCTAC.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_CTCTCTAC.setLabel('Index1 (i7) N707 CTCTCTAC')\nvocabulary_term_INDEX1_CTCTCTAC.setOrdinal(32)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTCTCTAC)\n \nvocabulary_term_INDEX1_CAGAGAGG = tr.createNewVocabularyTerm('CAGAGAGG')\nvocabulary_term_INDEX1_CAGAGAGG.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_CAGAGAGG.setLabel('Index1 (i7) N708 CAGAGAGG')\nvocabulary_term_INDEX1_CAGAGAGG.setOrdinal(33)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGAGAGG)\n \nvocabulary_term_INDEX1_GCTACGCT = tr.createNewVocabularyTerm('GCTACGCT')\nvocabulary_term_INDEX1_GCTACGCT.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_GCTACGCT.setLabel('Index1 (i7) N709 GCTACGCT')\nvocabulary_term_INDEX1_GCTACGCT.setOrdinal(34)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCTACGCT)\n \nvocabulary_term_INDEX1_CGAGGCTG = tr.createNewVocabularyTerm('CGAGGCTG')\nvocabulary_term_INDEX1_CGAGGCTG.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_CGAGGCTG.setLabel('Index1 (i7) N710 CGAGGCTG')\nvocabulary_term_INDEX1_CGAGGCTG.setOrdinal(35)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGAGGCTG)\n \nvocabulary_term_INDEX1_AAGAGGCA = tr.createNewVocabularyTerm('AAGAGGCA')\nvocabulary_term_INDEX1_AAGAGGCA.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_AAGAGGCA.setLabel('Index1 (i7) N711 AAGAGGCA')\nvocabulary_term_INDEX1_AAGAGGCA.setOrdinal(36)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AAGAGGCA)\n \nvocabulary_term_INDEX1_GTAGAGGA = tr.createNewVocabularyTerm('GTAGAGGA')\nvocabulary_term_INDEX1_GTAGAGGA.setDescription('Nextera DNA')\nvocabulary_term_INDEX1_GTAGAGGA.setLabel('Index1 (i7) N712 GTAGAGGA')\nvocabulary_term_INDEX1_GTAGAGGA.setOrdinal(37)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTAGAGGA)\n \nvocabulary_term_INDEX1_AAGACTA = tr.createNewVocabularyTerm('AAGACTA')\nvocabulary_term_INDEX1_AAGACTA.setDescription(None)\nvocabulary_term_INDEX1_AAGACTA.setLabel('02 AAGACT')\nvocabulary_term_INDEX1_AAGACTA.setOrdinal(38)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AAGACTA)\n \nvocabulary_term_INDEX1_ACTTCAA = tr.createNewVocabularyTerm('ACTTCAA')\nvocabulary_term_INDEX1_ACTTCAA.setDescription(None)\nvocabulary_term_INDEX1_ACTTCAA.setLabel('10 ACTTCA')\nvocabulary_term_INDEX1_ACTTCAA.setOrdinal(39)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ACTTCAA)\n \nvocabulary_term_INDEX1_AGGTTGA = tr.createNewVocabularyTerm('AGGTTGA')\nvocabulary_term_INDEX1_AGGTTGA.setDescription(None)\nvocabulary_term_INDEX1_AGGTTGA.setLabel('17 AGGTTG')\nvocabulary_term_INDEX1_AGGTTGA.setOrdinal(40)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGGTTGA)\n \nvocabulary_term_INDEX1_TTCGTCA = tr.createNewVocabularyTerm('TTCGTCA')\nvocabulary_term_INDEX1_TTCGTCA.setDescription(None)\nvocabulary_term_INDEX1_TTCGTCA.setLabel('17 TTCGTCA')\nvocabulary_term_INDEX1_TTCGTCA.setOrdinal(41)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTCGTCA)\n \nvocabulary_term_INDEX1_AGCATAA = tr.createNewVocabularyTerm('AGCATAA')\nvocabulary_term_INDEX1_AGCATAA.setDescription(None)\nvocabulary_term_INDEX1_AGCATAA.setLabel('20 AGCATAA')\nvocabulary_term_INDEX1_AGCATAA.setOrdinal(42)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGCATAA)\n \nvocabulary_term_INDEX1_ATACGCA = tr.createNewVocabularyTerm('ATACGCA')\nvocabulary_term_INDEX1_ATACGCA.setDescription(None)\nvocabulary_term_INDEX1_ATACGCA.setLabel('20 ATACGC')\nvocabulary_term_INDEX1_ATACGCA.setOrdinal(43)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATACGCA)\n \nvocabulary_term_INDEX1_CAGATGA = tr.createNewVocabularyTerm('CAGATGA')\nvocabulary_term_INDEX1_CAGATGA.setDescription(None)\nvocabulary_term_INDEX1_CAGATGA.setLabel('28 CAGATG')\nvocabulary_term_INDEX1_CAGATGA.setOrdinal(44)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGATGA)\n \nvocabulary_term_INDEX1_CCGAATA = tr.createNewVocabularyTerm('CCGAATA')\nvocabulary_term_INDEX1_CCGAATA.setDescription(None)\nvocabulary_term_INDEX1_CCGAATA.setLabel('34 CCGAAT')\nvocabulary_term_INDEX1_CCGAATA.setOrdinal(45)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGAATA)\n \nvocabulary_term_INDEX1_CGCTCGA = tr.createNewVocabularyTerm('CGCTCGA')\nvocabulary_term_INDEX1_CGCTCGA.setDescription(None)\nvocabulary_term_INDEX1_CGCTCGA.setLabel('43 CGCTCG')\nvocabulary_term_INDEX1_CGCTCGA.setOrdinal(46)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGCTCGA)\n \nvocabulary_term_INDEX1_CGTATTA = tr.createNewVocabularyTerm('CGTATTA')\nvocabulary_term_INDEX1_CGTATTA.setDescription(None)\nvocabulary_term_INDEX1_CGTATTA.setLabel('45 CGTATT')\nvocabulary_term_INDEX1_CGTATTA.setOrdinal(47)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTATTA)\n \nvocabulary_term_INDEX1_CCATGAA = tr.createNewVocabularyTerm('CCATGAA')\nvocabulary_term_INDEX1_CCATGAA.setDescription(None)\nvocabulary_term_INDEX1_CCATGAA.setLabel('50 CCATGAA')\nvocabulary_term_INDEX1_CCATGAA.setOrdinal(48)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCATGAA)\n \nvocabulary_term_INDEX1_CTGACCA = tr.createNewVocabularyTerm('CTGACCA')\nvocabulary_term_INDEX1_CTGACCA.setDescription(None)\nvocabulary_term_INDEX1_CTGACCA.setLabel('50 CTGACC')\nvocabulary_term_INDEX1_CTGACCA.setOrdinal(49)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTGACCA)\n \nvocabulary_term_INDEX1_GAAGCCA = tr.createNewVocabularyTerm('GAAGCCA')\nvocabulary_term_INDEX1_GAAGCCA.setDescription(None)\nvocabulary_term_INDEX1_GAAGCCA.setLabel('52 GAAGCC')\nvocabulary_term_INDEX1_GAAGCCA.setOrdinal(50)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GAAGCCA)\n \nvocabulary_term_INDEX1_NOINDEX = tr.createNewVocabularyTerm('NOINDEX')\nvocabulary_term_INDEX1_NOINDEX.setDescription(None)\nvocabulary_term_INDEX1_NOINDEX.setLabel(None)\nvocabulary_term_INDEX1_NOINDEX.setOrdinal(51)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_NOINDEX)\n \nvocabulary_term_INDEX1_GCTGAAA = tr.createNewVocabularyTerm('GCTGAAA')\nvocabulary_term_INDEX1_GCTGAAA.setDescription(None)\nvocabulary_term_INDEX1_GCTGAAA.setLabel('59 GCTGAA')\nvocabulary_term_INDEX1_GCTGAAA.setOrdinal(52)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCTGAAA)\n \nvocabulary_term_INDEX1_GTCGCGA = tr.createNewVocabularyTerm('GTCGCGA')\nvocabulary_term_INDEX1_GTCGCGA.setDescription(None)\nvocabulary_term_INDEX1_GTCGCGA.setLabel('64 GTCGCG')\nvocabulary_term_INDEX1_GTCGCGA.setOrdinal(53)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTCGCGA)\n \nvocabulary_term_INDEX1_TAAGATA = tr.createNewVocabularyTerm('TAAGATA')\nvocabulary_term_INDEX1_TAAGATA.setDescription(None)\nvocabulary_term_INDEX1_TAAGATA.setLabel('65 TAAGAT')\nvocabulary_term_INDEX1_TAAGATA.setOrdinal(54)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAAGATA)\n \nvocabulary_term_INDEX1_GCGCTGA = tr.createNewVocabularyTerm('GCGCTGA')\nvocabulary_term_INDEX1_GCGCTGA.setDescription(None)\nvocabulary_term_INDEX1_GCGCTGA.setLabel('66 GCGCTGA')\nvocabulary_term_INDEX1_GCGCTGA.setOrdinal(55)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GCGCTGA)\n \nvocabulary_term_INDEX1_TATCGTA = tr.createNewVocabularyTerm('TATCGTA')\nvocabulary_term_INDEX1_TATCGTA.setDescription(None)\nvocabulary_term_INDEX1_TATCGTA.setLabel('66 TATCGT')\nvocabulary_term_INDEX1_TATCGTA.setOrdinal(56)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TATCGTA)\n \nvocabulary_term_INDEX1_TCCTACA = tr.createNewVocabularyTerm('TCCTACA')\nvocabulary_term_INDEX1_TCCTACA.setDescription(None)\nvocabulary_term_INDEX1_TCCTACA.setLabel('68 TCCTAC')\nvocabulary_term_INDEX1_TCCTACA.setOrdinal(57)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCTACA)\n \nvocabulary_term_INDEX1_TCTATAA = tr.createNewVocabularyTerm('TCTATAA')\nvocabulary_term_INDEX1_TCTATAA.setDescription(None)\nvocabulary_term_INDEX1_TCTATAA.setLabel('70 TCTATA')\nvocabulary_term_INDEX1_TCTATAA.setOrdinal(58)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCTATAA)\n \nvocabulary_term_INDEX1_TTACTTA = tr.createNewVocabularyTerm('TTACTTA')\nvocabulary_term_INDEX1_TTACTTA.setDescription(None)\nvocabulary_term_INDEX1_TTACTTA.setLabel('74 TTACTT')\nvocabulary_term_INDEX1_TTACTTA.setOrdinal(59)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTACTTA)\n \nvocabulary_term_INDEX1_TTCCGAA = tr.createNewVocabularyTerm('TTCCGAA')\nvocabulary_term_INDEX1_TTCCGAA.setDescription(None)\nvocabulary_term_INDEX1_TTCCGAA.setLabel('75 TTCCGA')\nvocabulary_term_INDEX1_TTCCGAA.setOrdinal(60)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TTCCGAA)\n \nvocabulary_term_INDEX1_ATGTCAA = tr.createNewVocabularyTerm('ATGTCAA')\nvocabulary_term_INDEX1_ATGTCAA.setDescription(None)\nvocabulary_term_INDEX1_ATGTCAA.setLabel('DNA Adapter 15')\nvocabulary_term_INDEX1_ATGTCAA.setOrdinal(61)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGTCAA)\n \nvocabulary_term_INDEX1_CCGTCCA = tr.createNewVocabularyTerm('CCGTCCA')\nvocabulary_term_INDEX1_CCGTCCA.setDescription(None)\nvocabulary_term_INDEX1_CCGTCCA.setLabel('DNA Adapter 16')\nvocabulary_term_INDEX1_CCGTCCA.setOrdinal(62)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCGTCCA)\n \nvocabulary_term_INDEX1_GTAGAGA = tr.createNewVocabularyTerm('GTAGAGA')\nvocabulary_term_INDEX1_GTAGAGA.setDescription(None)\nvocabulary_term_INDEX1_GTAGAGA.setLabel('DNA Adapter 17')\nvocabulary_term_INDEX1_GTAGAGA.setOrdinal(63)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTAGAGA)\n \nvocabulary_term_INDEX1_GTGAAAA = tr.createNewVocabularyTerm('GTGAAAA')\nvocabulary_term_INDEX1_GTGAAAA.setDescription(None)\nvocabulary_term_INDEX1_GTGAAAA.setLabel('DNA Adapter 19')\nvocabulary_term_INDEX1_GTGAAAA.setOrdinal(64)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGAAAA)\n \nvocabulary_term_INDEX1_GTGGCCA = tr.createNewVocabularyTerm('GTGGCCA')\nvocabulary_term_INDEX1_GTGGCCA.setDescription(None)\nvocabulary_term_INDEX1_GTGGCCA.setLabel('DNA Adapter 20')\nvocabulary_term_INDEX1_GTGGCCA.setOrdinal(65)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTGGCCA)\n \nvocabulary_term_INDEX1_GTTTCGA = tr.createNewVocabularyTerm('GTTTCGA')\nvocabulary_term_INDEX1_GTTTCGA.setDescription(None)\nvocabulary_term_INDEX1_GTTTCGA.setLabel('DNA Adapter 21')\nvocabulary_term_INDEX1_GTTTCGA.setOrdinal(66)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GTTTCGA)\n \nvocabulary_term_INDEX1_CGTACGA = tr.createNewVocabularyTerm('CGTACGA')\nvocabulary_term_INDEX1_CGTACGA.setDescription(None)\nvocabulary_term_INDEX1_CGTACGA.setLabel('DNA Adapter 22')\nvocabulary_term_INDEX1_CGTACGA.setOrdinal(67)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGTACGA)\n \nvocabulary_term_INDEX1_GGTAGCA = tr.createNewVocabularyTerm('GGTAGCA')\nvocabulary_term_INDEX1_GGTAGCA.setDescription(None)\nvocabulary_term_INDEX1_GGTAGCA.setLabel('DNA Adapter 24')\nvocabulary_term_INDEX1_GGTAGCA.setOrdinal(68)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GGTAGCA)\n \nvocabulary_term_INDEX1_ATGAGCA = tr.createNewVocabularyTerm('ATGAGCA')\nvocabulary_term_INDEX1_ATGAGCA.setDescription(None)\nvocabulary_term_INDEX1_ATGAGCA.setLabel('DNA Adapter 26')\nvocabulary_term_INDEX1_ATGAGCA.setOrdinal(69)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATGAGCA)\n \nvocabulary_term_INDEX1_ATTCCTA = tr.createNewVocabularyTerm('ATTCCTA')\nvocabulary_term_INDEX1_ATTCCTA.setDescription(None)\nvocabulary_term_INDEX1_ATTCCTA.setLabel('DNA Adapter 27')\nvocabulary_term_INDEX1_ATTCCTA.setOrdinal(70)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_ATTCCTA)\n \nvocabulary_term_INDEX1_CAAAAGA = tr.createNewVocabularyTerm('CAAAAGA')\nvocabulary_term_INDEX1_CAAAAGA.setDescription(None)\nvocabulary_term_INDEX1_CAAAAGA.setLabel('DNA Adapter 28')\nvocabulary_term_INDEX1_CAAAAGA.setOrdinal(71)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAAAAGA)\n \nvocabulary_term_INDEX1_CAACTAA = tr.createNewVocabularyTerm('CAACTAA')\nvocabulary_term_INDEX1_CAACTAA.setDescription(None)\nvocabulary_term_INDEX1_CAACTAA.setLabel('DNA Adapter 29')\nvocabulary_term_INDEX1_CAACTAA.setOrdinal(72)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAACTAA)\n \nvocabulary_term_INDEX1_CACCGGA = tr.createNewVocabularyTerm('CACCGGA')\nvocabulary_term_INDEX1_CACCGGA.setDescription(None)\nvocabulary_term_INDEX1_CACCGGA.setLabel('DNA Adapter 30')\nvocabulary_term_INDEX1_CACCGGA.setOrdinal(73)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACCGGA)\n \nvocabulary_term_INDEX1_CACGATA = tr.createNewVocabularyTerm('CACGATA')\nvocabulary_term_INDEX1_CACGATA.setDescription(None)\nvocabulary_term_INDEX1_CACGATA.setLabel('DNA Adapter 31')\nvocabulary_term_INDEX1_CACGATA.setOrdinal(74)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACGATA)\n \nvocabulary_term_INDEX1_CACTCAA = tr.createNewVocabularyTerm('CACTCAA')\nvocabulary_term_INDEX1_CACTCAA.setDescription(None)\nvocabulary_term_INDEX1_CACTCAA.setLabel('DNA Adapter 32')\nvocabulary_term_INDEX1_CACTCAA.setOrdinal(75)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CACTCAA)\n \nvocabulary_term_INDEX1_CAGGCGA = tr.createNewVocabularyTerm('CAGGCGA')\nvocabulary_term_INDEX1_CAGGCGA.setDescription(None)\nvocabulary_term_INDEX1_CAGGCGA.setLabel('DNA Adapter 33')\nvocabulary_term_INDEX1_CAGGCGA.setOrdinal(76)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CAGGCGA)\n \nvocabulary_term_INDEX1_CATGGCA = tr.createNewVocabularyTerm('CATGGCA')\nvocabulary_term_INDEX1_CATGGCA.setDescription(None)\nvocabulary_term_INDEX1_CATGGCA.setLabel('DNA Adapter 34')\nvocabulary_term_INDEX1_CATGGCA.setOrdinal(77)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CATGGCA)\n \nvocabulary_term_INDEX1_CATTTTA = tr.createNewVocabularyTerm('CATTTTA')\nvocabulary_term_INDEX1_CATTTTA.setDescription(None)\nvocabulary_term_INDEX1_CATTTTA.setLabel('DNA Adapter 35')\nvocabulary_term_INDEX1_CATTTTA.setOrdinal(78)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CATTTTA)\n \nvocabulary_term_INDEX1_CCAACAA = tr.createNewVocabularyTerm('CCAACAA')\nvocabulary_term_INDEX1_CCAACAA.setDescription(None)\nvocabulary_term_INDEX1_CCAACAA.setLabel('DNA Adapter 36')\nvocabulary_term_INDEX1_CCAACAA.setOrdinal(79)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CCAACAA)\n \nvocabulary_term_INDEX1_CGGAATA = tr.createNewVocabularyTerm('CGGAATA')\nvocabulary_term_INDEX1_CGGAATA.setDescription(None)\nvocabulary_term_INDEX1_CGGAATA.setLabel('DNA Adapter 37')\nvocabulary_term_INDEX1_CGGAATA.setOrdinal(80)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CGGAATA)\n \nvocabulary_term_INDEX1_CTAGCTA = tr.createNewVocabularyTerm('CTAGCTA')\nvocabulary_term_INDEX1_CTAGCTA.setDescription(None)\nvocabulary_term_INDEX1_CTAGCTA.setLabel('DNA Adapter 38')\nvocabulary_term_INDEX1_CTAGCTA.setOrdinal(81)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTAGCTA)\n \nvocabulary_term_INDEX1_CTATACA = tr.createNewVocabularyTerm('CTATACA')\nvocabulary_term_INDEX1_CTATACA.setDescription(None)\nvocabulary_term_INDEX1_CTATACA.setLabel('DNA Adapter 39')\nvocabulary_term_INDEX1_CTATACA.setOrdinal(82)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTATACA)\n \nvocabulary_term_INDEX1_CTCAGAA = tr.createNewVocabularyTerm('CTCAGAA')\nvocabulary_term_INDEX1_CTCAGAA.setDescription(None)\nvocabulary_term_INDEX1_CTCAGAA.setLabel('DNA Adapter 40')\nvocabulary_term_INDEX1_CTCAGAA.setOrdinal(83)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_CTCAGAA)\n \nvocabulary_term_INDEX1_GACGACA = tr.createNewVocabularyTerm('GACGACA')\nvocabulary_term_INDEX1_GACGACA.setDescription(None)\nvocabulary_term_INDEX1_GACGACA.setLabel('DNA Adapter 41')\nvocabulary_term_INDEX1_GACGACA.setOrdinal(84)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_GACGACA)\n \nvocabulary_term_INDEX1_TAATCGA = tr.createNewVocabularyTerm('TAATCGA')\nvocabulary_term_INDEX1_TAATCGA.setDescription(None)\nvocabulary_term_INDEX1_TAATCGA.setLabel('DNA Adapter 42')\nvocabulary_term_INDEX1_TAATCGA.setOrdinal(85)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TAATCGA)\n \nvocabulary_term_INDEX1_TACAGCA = tr.createNewVocabularyTerm('TACAGCA')\nvocabulary_term_INDEX1_TACAGCA.setDescription(None)\nvocabulary_term_INDEX1_TACAGCA.setLabel('DNA Adapter 43')\nvocabulary_term_INDEX1_TACAGCA.setOrdinal(86)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TACAGCA)\n \nvocabulary_term_INDEX1_TATAATA = tr.createNewVocabularyTerm('TATAATA')\nvocabulary_term_INDEX1_TATAATA.setDescription(None)\nvocabulary_term_INDEX1_TATAATA.setLabel('DNA Adapter 44')\nvocabulary_term_INDEX1_TATAATA.setOrdinal(87)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TATAATA)\n \nvocabulary_term_INDEX1_TCATTCA = tr.createNewVocabularyTerm('TCATTCA')\nvocabulary_term_INDEX1_TCATTCA.setDescription(None)\nvocabulary_term_INDEX1_TCATTCA.setLabel('DNA Adapter 45')\nvocabulary_term_INDEX1_TCATTCA.setOrdinal(88)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCATTCA)\n \nvocabulary_term_INDEX1_TCCCGAA = tr.createNewVocabularyTerm('TCCCGAA')\nvocabulary_term_INDEX1_TCCCGAA.setDescription(None)\nvocabulary_term_INDEX1_TCCCGAA.setLabel('DNA Adapter 46')\nvocabulary_term_INDEX1_TCCCGAA.setOrdinal(89)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCCCGAA)\n \nvocabulary_term_INDEX1_TCGAAGA = tr.createNewVocabularyTerm('TCGAAGA')\nvocabulary_term_INDEX1_TCGAAGA.setDescription(None)\nvocabulary_term_INDEX1_TCGAAGA.setLabel('DNA Adapter 47')\nvocabulary_term_INDEX1_TCGAAGA.setOrdinal(90)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCGAAGA)\n \nvocabulary_term_INDEX1_TCGGCAA = tr.createNewVocabularyTerm('TCGGCAA')\nvocabulary_term_INDEX1_TCGGCAA.setDescription(None)\nvocabulary_term_INDEX1_TCGGCAA.setLabel('DNA Adapter 48')\nvocabulary_term_INDEX1_TCGGCAA.setOrdinal(91)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_TCGGCAA)\n \nvocabulary_term_INDEX1_AGTCAAC = tr.createNewVocabularyTerm('AGTCAAC')\nvocabulary_term_INDEX1_AGTCAAC.setDescription(None)\nvocabulary_term_INDEX1_AGTCAAC.setLabel('Index13 AGTCAAC')\nvocabulary_term_INDEX1_AGTCAAC.setOrdinal(92)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AGTCAAC)\n \nvocabulary_term_INDEX1_AATGCGA = tr.createNewVocabularyTerm('AATGCGA')\nvocabulary_term_INDEX1_AATGCGA.setDescription(None)\nvocabulary_term_INDEX1_AATGCGA.setLabel('Lib AATGCGA')\nvocabulary_term_INDEX1_AATGCGA.setOrdinal(93)\nvocabulary_INDEX1.addTerm(vocabulary_term_INDEX1_AATGCGA)\n \nvocabulary_INDEX2 = tr.getOrCreateNewVocabulary('INDEX2')\nvocabulary_INDEX2.setDescription('Index 2 for Illumina Dual Indexing')\nvocabulary_INDEX2.setUrlTemplate(None)\nvocabulary_INDEX2.setManagedInternally(False)\nvocabulary_INDEX2.setInternalNamespace(False)\nvocabulary_INDEX2.setChosenFromList(True)\n \nvocabulary_term_INDEX2_NONE = tr.createNewVocabularyTerm('NONE')\nvocabulary_term_INDEX2_NONE.setDescription('No Index')\nvocabulary_term_INDEX2_NONE.setLabel('None')\nvocabulary_term_INDEX2_NONE.setOrdinal(1)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_NONE)\n \nvocabulary_term_INDEX2_TAGATCGC = tr.createNewVocabularyTerm('TAGATCGC')\nvocabulary_term_INDEX2_TAGATCGC.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_TAGATCGC.setLabel('Index2 (i5) N501 TAGATCGC')\nvocabulary_term_INDEX2_TAGATCGC.setOrdinal(2)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_TAGATCGC)\n \nvocabulary_term_INDEX2_CTCTCTAT = tr.createNewVocabularyTerm('CTCTCTAT')\nvocabulary_term_INDEX2_CTCTCTAT.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_CTCTCTAT.setLabel('Index2 (i5) N502 CTCTCTAT')\nvocabulary_term_INDEX2_CTCTCTAT.setOrdinal(3)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_CTCTCTAT)\n \nvocabulary_term_INDEX2_TATCCTCT = tr.createNewVocabularyTerm('TATCCTCT')\nvocabulary_term_INDEX2_TATCCTCT.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_TATCCTCT.setLabel('Index2 (i5) N503 TATCCTCT')\nvocabulary_term_INDEX2_TATCCTCT.setOrdinal(4)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_TATCCTCT)\n \nvocabulary_term_INDEX2_AGAGTAGA = tr.createNewVocabularyTerm('AGAGTAGA')\nvocabulary_term_INDEX2_AGAGTAGA.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_AGAGTAGA.setLabel('Index2 (i5) N504 AGAGTAGA')\nvocabulary_term_INDEX2_AGAGTAGA.setOrdinal(5)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_AGAGTAGA)\n \nvocabulary_term_INDEX2_GTAAGGAG = tr.createNewVocabularyTerm('GTAAGGAG')\nvocabulary_term_INDEX2_GTAAGGAG.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_GTAAGGAG.setLabel('Index2 (i5) N505 GTAAGGAG')\nvocabulary_term_INDEX2_GTAAGGAG.setOrdinal(6)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_GTAAGGAG)\n \nvocabulary_term_INDEX2_ACTGCATA = tr.createNewVocabularyTerm('ACTGCATA')\nvocabulary_term_INDEX2_ACTGCATA.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_ACTGCATA.setLabel('Index2 (i5) N506 ACTGCATA')\nvocabulary_term_INDEX2_ACTGCATA.setOrdinal(7)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_ACTGCATA)\n \nvocabulary_term_INDEX2_AAGGAGTA = tr.createNewVocabularyTerm('AAGGAGTA')\nvocabulary_term_INDEX2_AAGGAGTA.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_AAGGAGTA.setLabel('Index2 (i5) N507 AAGGAGTA')\nvocabulary_term_INDEX2_AAGGAGTA.setOrdinal(8)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_AAGGAGTA)\n \nvocabulary_term_INDEX2_CTAAGCCT = tr.createNewVocabularyTerm('CTAAGCCT')\nvocabulary_term_INDEX2_CTAAGCCT.setDescription('Nextera DNA')\nvocabulary_term_INDEX2_CTAAGCCT.setLabel('Index2 (i5) N508 CTAAGCCT')\nvocabulary_term_INDEX2_CTAAGCCT.setOrdinal(9)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_CTAAGCCT)\n \nvocabulary_term_INDEX2_NOINDEX = tr.createNewVocabularyTerm('NOINDEX')\nvocabulary_term_INDEX2_NOINDEX.setDescription(None)\nvocabulary_term_INDEX2_NOINDEX.setLabel(None)\nvocabulary_term_INDEX2_NOINDEX.setOrdinal(10)\nvocabulary_INDEX2.addTerm(vocabulary_term_INDEX2_NOINDEX)\n \nvocabulary_KIT = tr.getOrCreateNewVocabulary('KIT')\nvocabulary_KIT.setDescription('Illumina Kit used for preparation')\nvocabulary_KIT.setUrlTemplate(None)\nvocabulary_KIT.setManagedInternally(False)\nvocabulary_KIT.setInternalNamespace(False)\nvocabulary_KIT.setChosenFromList(True)\n \nvocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP = tr.createNewVocabularyTerm('CHIP_SEQ_SAMPLE_PREP')\nvocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setDescription(None)\nvocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setLabel('ChIP-Seq Sample Preparation Kit')\nvocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP.setOrdinal(1)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_CHIP_SEQ_SAMPLE_PREP)\n \nvocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1 = tr.createNewVocabularyTerm('NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1')\nvocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setDescription(None)\nvocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setLabel('NEB Genomic DNA Sample Preparation Kit')\nvocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1.setOrdinal(2)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1)\n \nvocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT = tr.createNewVocabularyTerm('NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT')\nvocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT.setDescription(None)\nvocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT.setLabel('NEB_ChIP_Seq_Sample_Preparation_Kit')\nvocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT.setOrdinal(3)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_NEB_CHIP_SEQ_SAMPLE_PREPARATION_KIT)\n \nvocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP = tr.createNewVocabularyTerm('GENOMICDNA_SAMPLE_PREP')\nvocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setDescription(None)\nvocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setLabel('Illumina Genomic DNA Sample Preparation Kit')\nvocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP.setOrdinal(4)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_GENOMICDNA_SAMPLE_PREP)\n \nvocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP = tr.createNewVocabularyTerm('PAIRED_END_DNA_SAMPLE_PREP')\nvocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setDescription(None)\nvocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setLabel('Paired End DNA Sample Prep Oligo Kit')\nvocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP.setOrdinal(5)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_PAIRED_END_DNA_SAMPLE_PREP)\n \nvocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP = tr.createNewVocabularyTerm('MRNA_SEQ_SAMPLE_PREP')\nvocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setDescription(None)\nvocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setLabel('mRNA-Seq Sample Preparation Kit')\nvocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP.setOrdinal(6)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_MRNA_SEQ_SAMPLE_PREP)\n \nvocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT = tr.createNewVocabularyTerm('RIBOZERO_SCRIPTSEQ_MRNA-SEQ_KIT')\nvocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setDescription(None)\nvocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setLabel('RiboZero ScriptSeq mRNA-Seq_Epicentre-kit')\nvocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT.setOrdinal(7)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_RIBOZERO_SCRIPTSEQ_MRNASEQ_KIT)\n \nvocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT = tr.createNewVocabularyTerm('POLYA_SCRIPTSEQ_MRNA-SEQ_KIT')\nvocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setDescription(None)\nvocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setLabel('PolyA(Beads) ScriptSeq mRNA-Seq_Epicentre-kit')\nvocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT.setOrdinal(8)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_POLYA_SCRIPTSEQ_MRNASEQ_KIT)\n \nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS = tr.createNewVocabularyTerm('NEXTERA_DNA_SAMPLE_PREP_KITS')\nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setDescription(None)\nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setLabel('Nextera Genomic DNA Sample Preparation Kit BufferLMW(Epicentre)')\nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS.setOrdinal(9)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KITS)\n \nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW = tr.createNewVocabularyTerm('NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW')\nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setDescription(None)\nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setLabel('Nextera Genomic DNA Sample Preparation Kit BufferHMW(Epicentre)')\nvocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW.setOrdinal(10)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_NEXTERA_DNA_SAMPLE_PREP_KIT_BUFFER_HMW)\n \nvocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM = tr.createNewVocabularyTerm('AGILENT_SURESELECT_ENRICHMENTSYSTEM')\nvocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setDescription(None)\nvocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setLabel('Agilent_SureSelect_EnrichmentSystem')\nvocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM.setOrdinal(11)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_AGILENT_SURESELECT_ENRICHMENTSYSTEM)\n \nvocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUSEQRNA_SAMPLE_PREP_KIT')\nvocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setDescription(None)\nvocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setLabel('TruSeq_RNA_SamplePrepKit_Illumina')\nvocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT.setOrdinal(12)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_TRUSEQRNA_SAMPLE_PREP_KIT)\n \nvocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUESEQ_CHIP_SAMPLE_PREP_KIT')\nvocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT.setDescription(None)\nvocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT.setLabel(None)\nvocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT.setOrdinal(13)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_TRUESEQ_CHIP_SAMPLE_PREP_KIT)\n \nvocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT = tr.createNewVocabularyTerm('TRUSEQ_DNA_SAMPLE_PREP_KIT')\nvocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setDescription(None)\nvocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setLabel('TruSeq_DNA_SamplePrepKit_Illumina')\nvocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT.setOrdinal(14)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_TRUSEQ_DNA_SAMPLE_PREP_KIT)\n \nvocabulary_term_KIT_NONE = tr.createNewVocabularyTerm('NONE')\nvocabulary_term_KIT_NONE.setDescription(None)\nvocabulary_term_KIT_NONE.setLabel('None (Already prepared)')\nvocabulary_term_KIT_NONE.setOrdinal(15)\nvocabulary_KIT.addTerm(vocabulary_term_KIT_NONE)\n \nvocabulary_MACS_VERSION = tr.getOrCreateNewVocabulary('MACS_VERSION')\nvocabulary_MACS_VERSION.setDescription('Used MACS version for Peak Calling')\nvocabulary_MACS_VERSION.setUrlTemplate(None)\nvocabulary_MACS_VERSION.setManagedInternally(False)\nvocabulary_MACS_VERSION.setInternalNamespace(False)\nvocabulary_MACS_VERSION.setChosenFromList(True)\n \nvocabulary_term_MACS_VERSION_140RC2 = tr.createNewVocabularyTerm('1.4.0RC2')\nvocabulary_term_MACS_VERSION_140RC2.setDescription(None)\nvocabulary_term_MACS_VERSION_140RC2.setLabel('macs14 1.4.0rc2 20110214 (Valentine)')\nvocabulary_term_MACS_VERSION_140RC2.setOrdinal(1)\nvocabulary_MACS_VERSION.addTerm(vocabulary_term_MACS_VERSION_140RC2)\n \nvocabulary_term_MACS_VERSION_1371 = tr.createNewVocabularyTerm('1.3.7.1')\nvocabulary_term_MACS_VERSION_1371.setDescription(None)\nvocabulary_term_MACS_VERSION_1371.setLabel('macs 1.3.7.1 (Oktoberfest, bug fixed #1)')\nvocabulary_term_MACS_VERSION_1371.setOrdinal(2)\nvocabulary_MACS_VERSION.addTerm(vocabulary_term_MACS_VERSION_1371)\n \nvocabulary_MISMATCH_IN_INDEX = tr.getOrCreateNewVocabulary('MISMATCH_IN_INDEX')\nvocabulary_MISMATCH_IN_INDEX.setDescription('Mismatch in Index allowed')\nvocabulary_MISMATCH_IN_INDEX.setUrlTemplate(None)\nvocabulary_MISMATCH_IN_INDEX.setManagedInternally(False)\nvocabulary_MISMATCH_IN_INDEX.setInternalNamespace(False)\nvocabulary_MISMATCH_IN_INDEX.setChosenFromList(True)\n \nvocabulary_term_MISMATCH_IN_INDEX_NONE = tr.createNewVocabularyTerm('NONE')\nvocabulary_term_MISMATCH_IN_INDEX_NONE.setDescription(None)\nvocabulary_term_MISMATCH_IN_INDEX_NONE.setLabel(None)\nvocabulary_term_MISMATCH_IN_INDEX_NONE.setOrdinal(1)\nvocabulary_MISMATCH_IN_INDEX.addTerm(vocabulary_term_MISMATCH_IN_INDEX_NONE)\n \nvocabulary_term_MISMATCH_IN_INDEX_ONE = tr.createNewVocabularyTerm('ONE')\nvocabulary_term_MISMATCH_IN_INDEX_ONE.setDescription(None)\nvocabulary_term_MISMATCH_IN_INDEX_ONE.setLabel(None)\nvocabulary_term_MISMATCH_IN_INDEX_ONE.setOrdinal(2)\nvocabulary_MISMATCH_IN_INDEX.addTerm(vocabulary_term_MISMATCH_IN_INDEX_ONE)\n \nvocabulary_NANO_DROP = tr.getOrCreateNewVocabulary('NANO_DROP')\nvocabulary_NANO_DROP.setDescription('Device for measuring the total amount of genetic material contained in the probe')\nvocabulary_NANO_DROP.setUrlTemplate(None)\nvocabulary_NANO_DROP.setManagedInternally(False)\nvocabulary_NANO_DROP.setInternalNamespace(False)\nvocabulary_NANO_DROP.setChosenFromList(True)\n \nvocabulary_term_NANO_DROP_CONCND3300 = tr.createNewVocabularyTerm('CONCND3300')\nvocabulary_term_NANO_DROP_CONCND3300.setDescription(None)\nvocabulary_term_NANO_DROP_CONCND3300.setLabel('Conc Nano Drop 3300')\nvocabulary_term_NANO_DROP_CONCND3300.setOrdinal(1)\nvocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND3300)\n \nvocabulary_term_NANO_DROP_CONCND1000 = tr.createNewVocabularyTerm('CONCND1000')\nvocabulary_term_NANO_DROP_CONCND1000.setDescription(None)\nvocabulary_term_NANO_DROP_CONCND1000.setLabel('Conc Nano Drop 1000')\nvocabulary_term_NANO_DROP_CONCND1000.setOrdinal(2)\nvocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND1000)\n \nvocabulary_term_NANO_DROP_CONCND2000 = tr.createNewVocabularyTerm('CONCND2000')\nvocabulary_term_NANO_DROP_CONCND2000.setDescription(None)\nvocabulary_term_NANO_DROP_CONCND2000.setLabel('Conc Nano Drop 2000')\nvocabulary_term_NANO_DROP_CONCND2000.setOrdinal(3)\nvocabulary_NANO_DROP.addTerm(vocabulary_term_NANO_DROP_CONCND2000)\n \nvocabulary_NCBI_TAXONOMY = tr.getOrCreateNewVocabulary('NCBI_TAXONOMY')\nvocabulary_NCBI_TAXONOMY.setDescription(None)\nvocabulary_NCBI_TAXONOMY.setUrlTemplate('http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$term$')\nvocabulary_NCBI_TAXONOMY.setManagedInternally(False)\nvocabulary_NCBI_TAXONOMY.setInternalNamespace(False)\nvocabulary_NCBI_TAXONOMY.setChosenFromList(True)\n \nvocabulary_term_NCBI_TAXONOMY_10090 = tr.createNewVocabularyTerm('10090')\nvocabulary_term_NCBI_TAXONOMY_10090.setDescription('Genbank common name: house mouse\\ Inherited blast name: rodents')\nvocabulary_term_NCBI_TAXONOMY_10090.setLabel('Mus musculus')\nvocabulary_term_NCBI_TAXONOMY_10090.setOrdinal(1)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10090)\n \nvocabulary_term_NCBI_TAXONOMY_9606 = tr.createNewVocabularyTerm('9606')\nvocabulary_term_NCBI_TAXONOMY_9606.setDescription('Genbank common name: human\\ Inherited blast name: primates')\nvocabulary_term_NCBI_TAXONOMY_9606.setLabel('Homo sapiens')\nvocabulary_term_NCBI_TAXONOMY_9606.setOrdinal(2)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9606)\n \nvocabulary_term_NCBI_TAXONOMY_7227 = tr.createNewVocabularyTerm('7227')\nvocabulary_term_NCBI_TAXONOMY_7227.setDescription('Genbank common name: fruit fly\\ Inherited blast name: flies')\nvocabulary_term_NCBI_TAXONOMY_7227.setLabel('Drosophila melanogaster')\nvocabulary_term_NCBI_TAXONOMY_7227.setOrdinal(3)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_7227)\n \nvocabulary_term_NCBI_TAXONOMY_6239 = tr.createNewVocabularyTerm('6239')\nvocabulary_term_NCBI_TAXONOMY_6239.setDescription('Inherited blast name: nematodes')\nvocabulary_term_NCBI_TAXONOMY_6239.setLabel('Caenorhabditis elegans')\nvocabulary_term_NCBI_TAXONOMY_6239.setOrdinal(4)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_6239)\n \nvocabulary_term_NCBI_TAXONOMY_4932 = tr.createNewVocabularyTerm('4932')\nvocabulary_term_NCBI_TAXONOMY_4932.setDescription('Genbank common name: baker\\'s yeast\\ Inherited blast name: ascomycetes')\nvocabulary_term_NCBI_TAXONOMY_4932.setLabel('Saccharomyces cerevisiae')\nvocabulary_term_NCBI_TAXONOMY_4932.setOrdinal(5)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4932)\n \nvocabulary_term_NCBI_TAXONOMY_10116 = tr.createNewVocabularyTerm('10116')\nvocabulary_term_NCBI_TAXONOMY_10116.setDescription('Genbank common name: Norway rat\\ Inherited blast name: rodents')\nvocabulary_term_NCBI_TAXONOMY_10116.setLabel('Rattus norvegicus')\nvocabulary_term_NCBI_TAXONOMY_10116.setOrdinal(6)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10116)\n \nvocabulary_term_NCBI_TAXONOMY_6669 = tr.createNewVocabularyTerm('6669')\nvocabulary_term_NCBI_TAXONOMY_6669.setDescription('Genbank common name: common water flea\\ Inherited blast name: crustaceans')\nvocabulary_term_NCBI_TAXONOMY_6669.setLabel('Daphnia pulex')\nvocabulary_term_NCBI_TAXONOMY_6669.setOrdinal(7)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_6669)\n \nvocabulary_term_NCBI_TAXONOMY_562 = tr.createNewVocabularyTerm('562')\nvocabulary_term_NCBI_TAXONOMY_562.setDescription('Inherited blast name: enterobacteria')\nvocabulary_term_NCBI_TAXONOMY_562.setLabel('Escherichia coli')\nvocabulary_term_NCBI_TAXONOMY_562.setOrdinal(8)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_562)\n \nvocabulary_term_NCBI_TAXONOMY_623 = tr.createNewVocabularyTerm('623')\nvocabulary_term_NCBI_TAXONOMY_623.setDescription('Inherited blast name: enterobacteria')\nvocabulary_term_NCBI_TAXONOMY_623.setLabel('Shigella flexneri')\nvocabulary_term_NCBI_TAXONOMY_623.setOrdinal(9)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_623)\n \nvocabulary_term_NCBI_TAXONOMY_10847 = tr.createNewVocabularyTerm('10847')\nvocabulary_term_NCBI_TAXONOMY_10847.setDescription('Inherited blast name: viruses')\nvocabulary_term_NCBI_TAXONOMY_10847.setLabel('Enterobacteria phage phiX174')\nvocabulary_term_NCBI_TAXONOMY_10847.setOrdinal(10)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_10847)\n \nvocabulary_term_NCBI_TAXONOMY_190650 = tr.createNewVocabularyTerm('190650')\nvocabulary_term_NCBI_TAXONOMY_190650.setDescription('Inherited blast name: a-proteobacteria')\nvocabulary_term_NCBI_TAXONOMY_190650.setLabel('Caulobacter crescentus CB15')\nvocabulary_term_NCBI_TAXONOMY_190650.setOrdinal(11)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_190650)\n \nvocabulary_term_NCBI_TAXONOMY_8113 = tr.createNewVocabularyTerm('8113')\nvocabulary_term_NCBI_TAXONOMY_8113.setDescription('Genbank common name: cichlids\\ Inherited blast name: bony fishes')\nvocabulary_term_NCBI_TAXONOMY_8113.setLabel('Cichlidae')\nvocabulary_term_NCBI_TAXONOMY_8113.setOrdinal(12)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_8113)\n \nvocabulary_term_NCBI_TAXONOMY_481459 = tr.createNewVocabularyTerm('481459')\nvocabulary_term_NCBI_TAXONOMY_481459.setDescription('Genbank common name: three-spined stickleback\\ Inherited blast name: bony fishes')\nvocabulary_term_NCBI_TAXONOMY_481459.setLabel('Gasterosteus aculeatus aculeatus')\nvocabulary_term_NCBI_TAXONOMY_481459.setOrdinal(13)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_481459)\n \nvocabulary_term_NCBI_TAXONOMY_282301 = tr.createNewVocabularyTerm('282301')\nvocabulary_term_NCBI_TAXONOMY_282301.setDescription('Inherited blast name: flatworms')\nvocabulary_term_NCBI_TAXONOMY_282301.setLabel('Macrostomum lignano')\nvocabulary_term_NCBI_TAXONOMY_282301.setOrdinal(14)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_282301)\n \nvocabulary_term_NCBI_TAXONOMY_99287 = tr.createNewVocabularyTerm('99287')\nvocabulary_term_NCBI_TAXONOMY_99287.setDescription('Inherited blast name: enterobacteria')\nvocabulary_term_NCBI_TAXONOMY_99287.setLabel('Salmonella enterica subsp. enterica serovar Typhimurium str. LT2')\nvocabulary_term_NCBI_TAXONOMY_99287.setOrdinal(15)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_99287)\n \nvocabulary_term_NCBI_TAXONOMY_4896 = tr.createNewVocabularyTerm('4896')\nvocabulary_term_NCBI_TAXONOMY_4896.setDescription('Genbank common name: fission yeast\\ Inherited blast name: ascomycetes')\nvocabulary_term_NCBI_TAXONOMY_4896.setLabel('Schizosaccharomyces pombe')\nvocabulary_term_NCBI_TAXONOMY_4896.setOrdinal(16)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4896)\n \nvocabulary_term_NCBI_TAXONOMY_4897 = tr.createNewVocabularyTerm('4897')\nvocabulary_term_NCBI_TAXONOMY_4897.setDescription('Inherited blast name: ascomycetes')\nvocabulary_term_NCBI_TAXONOMY_4897.setLabel('Schizosaccharomyces japonicus')\nvocabulary_term_NCBI_TAXONOMY_4897.setOrdinal(17)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4897)\n \nvocabulary_term_NCBI_TAXONOMY_7955 = tr.createNewVocabularyTerm('7955')\nvocabulary_term_NCBI_TAXONOMY_7955.setDescription('Genbank common name: zebrafish\\ Inherited blast name: bony fishes')\nvocabulary_term_NCBI_TAXONOMY_7955.setLabel('Danio rerio')\nvocabulary_term_NCBI_TAXONOMY_7955.setOrdinal(18)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_7955)\n \nvocabulary_term_NCBI_TAXONOMY_3702 = tr.createNewVocabularyTerm('3702')\nvocabulary_term_NCBI_TAXONOMY_3702.setDescription('Genbank common name: thale cress\\ Inherited blast name: eudicots')\nvocabulary_term_NCBI_TAXONOMY_3702.setLabel('Arabidopsis thaliana')\nvocabulary_term_NCBI_TAXONOMY_3702.setOrdinal(19)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3702)\n \nvocabulary_term_NCBI_TAXONOMY_225322 = tr.createNewVocabularyTerm('225322')\nvocabulary_term_NCBI_TAXONOMY_225322.setDescription('Bacterium which infects Daphnia\\ Pasteuria ramosa Metchnikoff 1888 (Approved Lists 1980) emend. Starr et al. 1986\\ Ebert D, Rainey P, Embley TM, Scholz D. Development, life\\ cycle, ultrastructure and phylogenetic position of Pasteuria ramosa Metchnikoff 1888: rediscovery of an obligate \\ endoparasite of Daphnia magna Straus. Philos Trans R Soc \\ Lond Ser B. 1996;351:1689.')\nvocabulary_term_NCBI_TAXONOMY_225322.setLabel('Pasteuria ramosa')\nvocabulary_term_NCBI_TAXONOMY_225322.setOrdinal(20)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_225322)\n \nvocabulary_term_NCBI_TAXONOMY_9913 = tr.createNewVocabularyTerm('9913')\nvocabulary_term_NCBI_TAXONOMY_9913.setDescription('Genbank common name: cattle\\ Inherited blast name: even-toed ungulates')\nvocabulary_term_NCBI_TAXONOMY_9913.setLabel('Bos taurus')\nvocabulary_term_NCBI_TAXONOMY_9913.setOrdinal(21)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9913)\n \nvocabulary_term_NCBI_TAXONOMY_9823 = tr.createNewVocabularyTerm('9823')\nvocabulary_term_NCBI_TAXONOMY_9823.setDescription('Genbank common name: pig\\ Inherited blast name: even-toed ungulates')\nvocabulary_term_NCBI_TAXONOMY_9823.setLabel('Sus scrofa')\nvocabulary_term_NCBI_TAXONOMY_9823.setOrdinal(22)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9823)\n \nvocabulary_term_NCBI_TAXONOMY_9940 = tr.createNewVocabularyTerm('9940')\nvocabulary_term_NCBI_TAXONOMY_9940.setDescription('Genbank common name: sheep\\ Inherited blast name: even-toed ungulates')\nvocabulary_term_NCBI_TAXONOMY_9940.setLabel('Ovis aries')\nvocabulary_term_NCBI_TAXONOMY_9940.setOrdinal(23)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9940)\n \nvocabulary_term_NCBI_TAXONOMY_9925 = tr.createNewVocabularyTerm('9925')\nvocabulary_term_NCBI_TAXONOMY_9925.setDescription('Genbank common name: goat\\ Inherited blast name: even-toed ungulates')\nvocabulary_term_NCBI_TAXONOMY_9925.setLabel('Capra hircus')\nvocabulary_term_NCBI_TAXONOMY_9925.setOrdinal(24)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_9925)\n \nvocabulary_term_NCBI_TAXONOMY_8153 = tr.createNewVocabularyTerm('8153')\nvocabulary_term_NCBI_TAXONOMY_8153.setDescription('Common name: cichlid fish')\nvocabulary_term_NCBI_TAXONOMY_8153.setLabel('Haplochromis burtoni')\nvocabulary_term_NCBI_TAXONOMY_8153.setOrdinal(25)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_8153)\n \nvocabulary_term_NCBI_TAXONOMY_61818 = tr.createNewVocabularyTerm('61818')\nvocabulary_term_NCBI_TAXONOMY_61818.setDescription('Common name: bony fish')\nvocabulary_term_NCBI_TAXONOMY_61818.setLabel('Amphilophus (nicaraguan)')\nvocabulary_term_NCBI_TAXONOMY_61818.setOrdinal(26)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_61818)\n \nvocabulary_term_NCBI_TAXONOMY_35525 = tr.createNewVocabularyTerm('35525')\nvocabulary_term_NCBI_TAXONOMY_35525.setDescription('Common name: water flea')\nvocabulary_term_NCBI_TAXONOMY_35525.setLabel('Daphnia Magna')\nvocabulary_term_NCBI_TAXONOMY_35525.setOrdinal(27)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_35525)\n \nvocabulary_term_NCBI_TAXONOMY_4081 = tr.createNewVocabularyTerm('4081')\nvocabulary_term_NCBI_TAXONOMY_4081.setDescription('Common Name: tomato')\nvocabulary_term_NCBI_TAXONOMY_4081.setLabel('Solanum lycopersicum (tomato)')\nvocabulary_term_NCBI_TAXONOMY_4081.setOrdinal(28)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_4081)\n \nvocabulary_term_NCBI_TAXONOMY_13068 = tr.createNewVocabularyTerm('13068')\nvocabulary_term_NCBI_TAXONOMY_13068.setDescription('Common name: earwig')\nvocabulary_term_NCBI_TAXONOMY_13068.setLabel('Forficula auricularia (earwig)')\nvocabulary_term_NCBI_TAXONOMY_13068.setOrdinal(29)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_13068)\n \nvocabulary_term_NCBI_TAXONOMY_3569 = tr.createNewVocabularyTerm('3569')\nvocabulary_term_NCBI_TAXONOMY_3569.setDescription('Genbank common name: clove pink')\nvocabulary_term_NCBI_TAXONOMY_3569.setLabel('Dianthus')\nvocabulary_term_NCBI_TAXONOMY_3569.setOrdinal(30)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3569)\n \nvocabulary_term_NCBI_TAXONOMY_3573 = tr.createNewVocabularyTerm('3573')\nvocabulary_term_NCBI_TAXONOMY_3573.setDescription('Genbank common name: campions\\ Inherited blast name: eudicots')\nvocabulary_term_NCBI_TAXONOMY_3573.setLabel('Silene')\nvocabulary_term_NCBI_TAXONOMY_3573.setOrdinal(31)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_3573)\n \nvocabulary_term_NCBI_TAXONOMY_32644 = tr.createNewVocabularyTerm('32644')\nvocabulary_term_NCBI_TAXONOMY_32644.setDescription('Inherited blast name: unclassified')\nvocabulary_term_NCBI_TAXONOMY_32644.setLabel('unidentified')\nvocabulary_term_NCBI_TAXONOMY_32644.setOrdinal(32)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_32644)\n \nvocabulary_term_NCBI_TAXONOMY_0000 = tr.createNewVocabularyTerm('0000')\nvocabulary_term_NCBI_TAXONOMY_0000.setDescription(None)\nvocabulary_term_NCBI_TAXONOMY_0000.setLabel('OTHER')\nvocabulary_term_NCBI_TAXONOMY_0000.setOrdinal(33)\nvocabulary_NCBI_TAXONOMY.addTerm(vocabulary_term_NCBI_TAXONOMY_0000)\n \nvocabulary_PIPELINE_VERSION = tr.getOrCreateNewVocabulary('PIPELINE_VERSION')\nvocabulary_PIPELINE_VERSION.setDescription('With which pipeline version has the data been analyzed?')\nvocabulary_PIPELINE_VERSION.setUrlTemplate(None)\nvocabulary_PIPELINE_VERSION.setManagedInternally(False)\nvocabulary_PIPELINE_VERSION.setInternalNamespace(False)\nvocabulary_PIPELINE_VERSION.setChosenFromList(True)\n \nvocabulary_term_PIPELINE_VERSION_11348 = tr.createNewVocabularyTerm('1.13.48')\nvocabulary_term_PIPELINE_VERSION_11348.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_11348.setLabel('RTA 1.13.48')\nvocabulary_term_PIPELINE_VERSION_11348.setOrdinal(1)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_11348)\n \nvocabulary_term_PIPELINE_VERSION_11242 = tr.createNewVocabularyTerm('1.12.4.2')\nvocabulary_term_PIPELINE_VERSION_11242.setDescription('Real Time Analysis in combination with HCS 1.4.8')\nvocabulary_term_PIPELINE_VERSION_11242.setLabel('RTA 1.12.4.2 (HiSeq 2000)')\nvocabulary_term_PIPELINE_VERSION_11242.setOrdinal(2)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_11242)\n \nvocabulary_term_PIPELINE_VERSION_112 = tr.createNewVocabularyTerm('1.12')\nvocabulary_term_PIPELINE_VERSION_112.setDescription('Real Time Analysis 1.12 HiSeq 2000')\nvocabulary_term_PIPELINE_VERSION_112.setLabel('RTA 1.12')\nvocabulary_term_PIPELINE_VERSION_112.setOrdinal(3)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_112)\n \nvocabulary_term_PIPELINE_VERSION_19 = tr.createNewVocabularyTerm('1.9')\nvocabulary_term_PIPELINE_VERSION_19.setDescription('Real Time Analysis 1.9')\nvocabulary_term_PIPELINE_VERSION_19.setLabel('RTA 1.9 (GA IIx)')\nvocabulary_term_PIPELINE_VERSION_19.setOrdinal(4)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_19)\n \nvocabulary_term_PIPELINE_VERSION_RTA_18 = tr.createNewVocabularyTerm('RTA_1.8')\nvocabulary_term_PIPELINE_VERSION_RTA_18.setDescription('Real Time Analysis 1.8')\nvocabulary_term_PIPELINE_VERSION_RTA_18.setLabel('RTA 1.8')\nvocabulary_term_PIPELINE_VERSION_RTA_18.setOrdinal(5)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_18)\n \nvocabulary_term_PIPELINE_VERSION_RTA_16 = tr.createNewVocabularyTerm('RTA_1.6')\nvocabulary_term_PIPELINE_VERSION_RTA_16.setDescription('Real Time Analysis 1.6')\nvocabulary_term_PIPELINE_VERSION_RTA_16.setLabel('RTA 1.6')\nvocabulary_term_PIPELINE_VERSION_RTA_16.setOrdinal(6)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_16)\n \nvocabulary_term_PIPELINE_VERSION_RTA_15 = tr.createNewVocabularyTerm('RTA_1.5')\nvocabulary_term_PIPELINE_VERSION_RTA_15.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_RTA_15.setLabel('RTA 1.5')\nvocabulary_term_PIPELINE_VERSION_RTA_15.setOrdinal(7)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_15)\n \nvocabulary_term_PIPELINE_VERSION_RTA_14150 = tr.createNewVocabularyTerm('RTA_1.4.15.0')\nvocabulary_term_PIPELINE_VERSION_RTA_14150.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_RTA_14150.setLabel('RTA 1.4.15.0')\nvocabulary_term_PIPELINE_VERSION_RTA_14150.setOrdinal(8)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_RTA_14150)\n \nvocabulary_term_PIPELINE_VERSION_15 = tr.createNewVocabularyTerm('1.5')\nvocabulary_term_PIPELINE_VERSION_15.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_15.setLabel(None)\nvocabulary_term_PIPELINE_VERSION_15.setOrdinal(9)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_15)\n \nvocabulary_term_PIPELINE_VERSION_14 = tr.createNewVocabularyTerm('1.4')\nvocabulary_term_PIPELINE_VERSION_14.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_14.setLabel(None)\nvocabulary_term_PIPELINE_VERSION_14.setOrdinal(10)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_14)\n \nvocabulary_term_PIPELINE_VERSION_132 = tr.createNewVocabularyTerm('1.3.2')\nvocabulary_term_PIPELINE_VERSION_132.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_132.setLabel(None)\nvocabulary_term_PIPELINE_VERSION_132.setOrdinal(11)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_132)\n \nvocabulary_term_PIPELINE_VERSION_10 = tr.createNewVocabularyTerm('1.0')\nvocabulary_term_PIPELINE_VERSION_10.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_10.setLabel(None)\nvocabulary_term_PIPELINE_VERSION_10.setOrdinal(12)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_10)\n \nvocabulary_term_PIPELINE_VERSION_PRE_10 = tr.createNewVocabularyTerm('PRE_1.0')\nvocabulary_term_PIPELINE_VERSION_PRE_10.setDescription('Before Pipeline Version 1.0')\nvocabulary_term_PIPELINE_VERSION_PRE_10.setLabel(None)\nvocabulary_term_PIPELINE_VERSION_PRE_10.setOrdinal(13)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_PRE_10)\n \nvocabulary_term_PIPELINE_VERSION_NONE = tr.createNewVocabularyTerm('NONE')\nvocabulary_term_PIPELINE_VERSION_NONE.setDescription(None)\nvocabulary_term_PIPELINE_VERSION_NONE.setLabel(None)\nvocabulary_term_PIPELINE_VERSION_NONE.setOrdinal(14)\nvocabulary_PIPELINE_VERSION.addTerm(vocabulary_term_PIPELINE_VERSION_NONE)\n \nvocabulary_SAMPLE_TYPE = tr.getOrCreateNewVocabulary('SAMPLE_TYPE')\nvocabulary_SAMPLE_TYPE.setDescription('Type of sample delivered by the customer')\nvocabulary_SAMPLE_TYPE.setUrlTemplate(None)\nvocabulary_SAMPLE_TYPE.setManagedInternally(False)\nvocabulary_SAMPLE_TYPE.setInternalNamespace(False)\nvocabulary_SAMPLE_TYPE.setChosenFromList(True)\n \nvocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY = tr.createNewVocabularyTerm('PROCESSED_DNA_LIBRARY')\nvocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY.setOrdinal(1)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_PROCESSED_DNA_LIBRARY)\n \nvocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE = tr.createNewVocabularyTerm('POOLED_SAMPLE')\nvocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE.setOrdinal(2)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_POOLED_SAMPLE)\n \nvocabulary_term_SAMPLE_TYPE_GENOMIC_DNA = tr.createNewVocabularyTerm('GENOMIC_DNA')\nvocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_GENOMIC_DNA.setOrdinal(3)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_GENOMIC_DNA)\n \nvocabulary_term_SAMPLE_TYPE_SMALL_RNA = tr.createNewVocabularyTerm('SMALL_RNA')\nvocabulary_term_SAMPLE_TYPE_SMALL_RNA.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_SMALL_RNA.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_SMALL_RNA.setOrdinal(4)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_SMALL_RNA)\n \nvocabulary_term_SAMPLE_TYPE_TOTAL_RNA = tr.createNewVocabularyTerm('TOTAL_RNA')\nvocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_TOTAL_RNA.setOrdinal(5)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_TOTAL_RNA)\n \nvocabulary_term_SAMPLE_TYPE_CHIP = tr.createNewVocabularyTerm('CHIP')\nvocabulary_term_SAMPLE_TYPE_CHIP.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_CHIP.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_CHIP.setOrdinal(6)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_CHIP)\n \nvocabulary_term_SAMPLE_TYPE_VIRAL = tr.createNewVocabularyTerm('VIRAL')\nvocabulary_term_SAMPLE_TYPE_VIRAL.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_VIRAL.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_VIRAL.setOrdinal(7)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_VIRAL)\n \nvocabulary_term_SAMPLE_TYPE_SYNTHETIC = tr.createNewVocabularyTerm('SYNTHETIC')\nvocabulary_term_SAMPLE_TYPE_SYNTHETIC.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_SYNTHETIC.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_SYNTHETIC.setOrdinal(8)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_SYNTHETIC)\n \nvocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA = tr.createNewVocabularyTerm('FRAGMENTED_GENOMIC_DNA')\nvocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA.setOrdinal(9)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_FRAGMENTED_GENOMIC_DNA)\n \nvocabulary_term_SAMPLE_TYPE_MRNA = tr.createNewVocabularyTerm('MRNA')\nvocabulary_term_SAMPLE_TYPE_MRNA.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_MRNA.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_MRNA.setOrdinal(10)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_MRNA)\n \nvocabulary_term_SAMPLE_TYPE_OTHER = tr.createNewVocabularyTerm('OTHER')\nvocabulary_term_SAMPLE_TYPE_OTHER.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_OTHER.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_OTHER.setOrdinal(11)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_OTHER)\n \nvocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP = tr.createNewVocabularyTerm('BISULFITE_CHIP')\nvocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP.setOrdinal(13)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_BISULFITE_CHIP)\n \nvocabulary_term_SAMPLE_TYPE_NONGENOMIC = tr.createNewVocabularyTerm('NON-GENOMIC')\nvocabulary_term_SAMPLE_TYPE_NONGENOMIC.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_NONGENOMIC.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_NONGENOMIC.setOrdinal(14)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_NONGENOMIC)\n \nvocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED = tr.createNewVocabularyTerm('BISULFITE_TREATED')\nvocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED.setDescription(None)\nvocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED.setLabel(None)\nvocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED.setOrdinal(15)\nvocabulary_SAMPLE_TYPE.addTerm(vocabulary_term_SAMPLE_TYPE_BISULFITE_TREATED)\n \nvocabulary_SBS_SEQUENCING_KIT_VERSION = tr.getOrCreateNewVocabulary('SBS_SEQUENCING_KIT_VERSION')\nvocabulary_SBS_SEQUENCING_KIT_VERSION.setDescription('Version of the Sequencing by Synthesis (SBS) Kit')\nvocabulary_SBS_SEQUENCING_KIT_VERSION.setUrlTemplate(None)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.setManagedInternally(False)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.setInternalNamespace(False)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.setChosenFromList(True)\n \nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5 = tr.createNewVocabularyTerm('TRUSEQ_V5')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setDescription(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setLabel('TruSeq v5')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5.setOrdinal(1)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_TRUSEQ_V5)\n \nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5 = tr.createNewVocabularyTerm('V5')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setDescription(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setLabel(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5.setOrdinal(2)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V5)\n \nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4 = tr.createNewVocabularyTerm('V4')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setDescription(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setLabel(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4.setOrdinal(3)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V4)\n \nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3 = tr.createNewVocabularyTerm('V3')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setDescription(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setLabel(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3.setOrdinal(4)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_V3)\n \nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3 = tr.createNewVocabularyTerm('SBS_HS_V3')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setDescription(None)\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setLabel('TruSeq SBS HS v3')\nvocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3.setOrdinal(5)\nvocabulary_SBS_SEQUENCING_KIT_VERSION.addTerm(vocabulary_term_SBS_SEQUENCING_KIT_VERSION_SBS_HS_V3)\n \nvocabulary_SEQUENCER = tr.getOrCreateNewVocabulary('SEQUENCER')\nvocabulary_SEQUENCER.setDescription('Which Sequencer was used?')\nvocabulary_SEQUENCER.setUrlTemplate(None)\nvocabulary_SEQUENCER.setManagedInternally(False)\nvocabulary_SEQUENCER.setInternalNamespace(False)\nvocabulary_SEQUENCER.setChosenFromList(True)\n \nvocabulary_term_SEQUENCER_M00721 = tr.createNewVocabularyTerm('M00721')\nvocabulary_term_SEQUENCER_M00721.setDescription(None)\nvocabulary_term_SEQUENCER_M00721.setLabel('MiSeq')\nvocabulary_term_SEQUENCER_M00721.setOrdinal(6)\nvocabulary_SEQUENCER.addTerm(vocabulary_term_SEQUENCER_M00721)\n \nvocabulary_term_SEQUENCER_SN792 = tr.createNewVocabularyTerm('SN792')\nvocabulary_term_SEQUENCER_SN792.setDescription(None)\nvocabulary_term_SEQUENCER_SN792.setLabel('HiSeq 2000')\nvocabulary_term_SEQUENCER_SN792.setOrdinal(7)\nvocabulary_SEQUENCER.addTerm(vocabulary_term_SEQUENCER_SN792)\n \nvocabulary_SEQUENCING_APPLICATION = tr.getOrCreateNewVocabulary('SEQUENCING_APPLICATION')\nvocabulary_SEQUENCING_APPLICATION.setDescription('Type of experiment of the High Throughput Sequencing applications')\nvocabulary_SEQUENCING_APPLICATION.setUrlTemplate(None)\nvocabulary_SEQUENCING_APPLICATION.setManagedInternally(False)\nvocabulary_SEQUENCING_APPLICATION.setInternalNamespace(False)\nvocabulary_SEQUENCING_APPLICATION.setChosenFromList(True)\n \nvocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ = tr.createNewVocabularyTerm('SMALL_RNA_SEQ')\nvocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setDescription(None)\nvocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setLabel(None)\nvocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ.setOrdinal(1)\nvocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_SMALL_RNA_SEQ)\n \nvocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ = tr.createNewVocabularyTerm('RNA_SEQ')\nvocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setDescription(None)\nvocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setLabel(None)\nvocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ.setOrdinal(2)\nvocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_RNA_SEQ)\n \nvocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ = tr.createNewVocabularyTerm('GENOMIC_DNA_SEQ')\nvocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setDescription(None)\nvocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setLabel(None)\nvocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ.setOrdinal(3)\nvocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_GENOMIC_DNA_SEQ)\n \nvocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ = tr.createNewVocabularyTerm('CHIP_SEQ')\nvocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setDescription(None)\nvocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setLabel(None)\nvocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ.setOrdinal(4)\nvocabulary_SEQUENCING_APPLICATION.addTerm(vocabulary_term_SEQUENCING_APPLICATION_CHIP_SEQ)\n \nvocabulary_YES_NO = tr.getOrCreateNewVocabulary('YES_NO')\nvocabulary_YES_NO.setDescription('Just offers YES or NO')\nvocabulary_YES_NO.setUrlTemplate(None)\nvocabulary_YES_NO.setManagedInternally(False)\nvocabulary_YES_NO.setInternalNamespace(False)\nvocabulary_YES_NO.setChosenFromList(True)\n \nvocabulary_term_YES_NO_YES = tr.createNewVocabularyTerm('YES')\nvocabulary_term_YES_NO_YES.setDescription(None)\nvocabulary_term_YES_NO_YES.setLabel(None)\nvocabulary_term_YES_NO_YES.setOrdinal(1)\nvocabulary_YES_NO.addTerm(vocabulary_term_YES_NO_YES)\n \nvocabulary_term_YES_NO_NO = tr.createNewVocabularyTerm('NO')\nvocabulary_term_YES_NO_NO.setDescription(None)\nvocabulary_term_YES_NO_NO.setLabel(None)\nvocabulary_term_YES_NO_NO.setOrdinal(2)\nvocabulary_YES_NO.addTerm(vocabulary_term_YES_NO_NO)\n\nprint "Imported 22 Vocabularies" \nscript_Diff_time = tr.getOrCreateNewScript('Diff_time')\nscript_Diff_time.setName('Diff_time')\nscript_Diff_time.setDescription('Calculates the difference of two given dates')\nscript_Diff_time.setScript('''from datetime import datetime\n\ndef dateTimeSplitter(openbisDate):\n dateAndTime, tz = openbisDate.rsplit(" ", 1)\n pythonDateTime = datetime.strptime(dateAndTime, "%Y-%m-%d %H:%M:%S") \n return pythonDateTime\n\ndef calculate():\n \n try:\n start = dateTimeSplitter(entity.propertyValue('FLOW_CELL_SEQUENCED_ON'))\n end = dateTimeSplitter(entity.propertyValue('SEQUENCER_FINISHED'))\n diffTime = end-start\n return str(diffTime)\n except:\n return "N/A"\n''')\nscript_Diff_time.setEntityForScript('SAMPLE')\nscript_Diff_time.setScriptType('DYNAMIC_PROPERTY')\n\nscript_Has_Parents = tr.getOrCreateNewScript('Has_Parents')\nscript_Has_Parents.setName('Has_Parents')\nscript_Has_Parents.setDescription('Check if the Entity has a parent')\nscript_Has_Parents.setScript('''def validate(entity, isNew):\n parents = entity.entityPE().parents\n if parents:\n return None\n else:\n return "No Parents have been selected!"\n''')\nscript_Has_Parents.setEntityForScript('SAMPLE')\nscript_Has_Parents.setScriptType('ENTITY_VALIDATION')\n\nprint "Imported 2 Scripts" \nexp_type_HT_SEQUENCING = tr.getOrCreateNewExperimentType('HT_SEQUENCING')\nexp_type_HT_SEQUENCING.setDescription('High Throughput Sequencing (e.g. Illumina HiSeq, Illumina GA)')\n\n\nprint "Imported 1 Experiment Types" \nsamp_type_ILLUMINA_FLOW_CELL = tr.getOrCreateNewSampleType('ILLUMINA_FLOW_CELL')\nsamp_type_ILLUMINA_FLOW_CELL.setDescription('Container of ILLUMINA_FLOW_LANES\\ Can be created automatically by a drop box and the properties can be filled from the RunInfo.xml and runParameters.xml files')\nsamp_type_ILLUMINA_FLOW_CELL.setListable(True)\nsamp_type_ILLUMINA_FLOW_CELL.setShowContainer(False)\nsamp_type_ILLUMINA_FLOW_CELL.setShowParents(False)\nsamp_type_ILLUMINA_FLOW_CELL.setSubcodeUnique(False)\nsamp_type_ILLUMINA_FLOW_CELL.setAutoGeneratedCode(False)\nsamp_type_ILLUMINA_FLOW_CELL.setShowParentMetadata(False)\nsamp_type_ILLUMINA_FLOW_CELL.setGeneratedCodePrefix('FLOWCELL-')\n\n\nsamp_type_ILLUMINA_FLOW_LANE = tr.getOrCreateNewSampleType('ILLUMINA_FLOW_LANE')\nsamp_type_ILLUMINA_FLOW_LANE.setDescription('Child of LIBRARY or POOL')\nsamp_type_ILLUMINA_FLOW_LANE.setListable(True)\nsamp_type_ILLUMINA_FLOW_LANE.setShowContainer(True)\nsamp_type_ILLUMINA_FLOW_LANE.setShowParents(True)\nsamp_type_ILLUMINA_FLOW_LANE.setSubcodeUnique(False)\nsamp_type_ILLUMINA_FLOW_LANE.setAutoGeneratedCode(False)\nsamp_type_ILLUMINA_FLOW_LANE.setShowParentMetadata(True)\nsamp_type_ILLUMINA_FLOW_LANE.setGeneratedCodePrefix('FLOWLANE-')\n\n\nsamp_type_LIBRARY = tr.getOrCreateNewSampleType('LIBRARY')\nsamp_type_LIBRARY.setDescription('Child of RAW and potential parent of POOL')\nsamp_type_LIBRARY.setListable(True)\nsamp_type_LIBRARY.setShowContainer(False)\nsamp_type_LIBRARY.setShowParents(True)\nsamp_type_LIBRARY.setSubcodeUnique(False)\nsamp_type_LIBRARY.setAutoGeneratedCode(True)\nsamp_type_LIBRARY.setShowParentMetadata(True)\nsamp_type_LIBRARY.setGeneratedCodePrefix('BSSE-QGF-LIBRARY-')\nsamp_type_LIBRARY.setValidationScript(script_Has_Parents)\n\nsamp_type_LIBRARY_POOL = tr.getOrCreateNewSampleType('LIBRARY_POOL')\nsamp_type_LIBRARY_POOL.setDescription('Child of several LIBRARY samples, used for multiplexing')\nsamp_type_LIBRARY_POOL.setListable(True)\nsamp_type_LIBRARY_POOL.setShowContainer(False)\nsamp_type_LIBRARY_POOL.setShowParents(True)\nsamp_type_LIBRARY_POOL.setSubcodeUnique(False)\nsamp_type_LIBRARY_POOL.setAutoGeneratedCode(True)\nsamp_type_LIBRARY_POOL.setShowParentMetadata(True)\nsamp_type_LIBRARY_POOL.setGeneratedCodePrefix('BSSE-QGF-POOL-')\nsamp_type_LIBRARY_POOL.setValidationScript(script_Has_Parents)\n\nsamp_type_MASTER_SAMPLE = tr.getOrCreateNewSampleType('MASTER_SAMPLE')\nsamp_type_MASTER_SAMPLE.setDescription('Sample Type holding Master Data and a parent to RAW')\nsamp_type_MASTER_SAMPLE.setListable(True)\nsamp_type_MASTER_SAMPLE.setShowContainer(False)\nsamp_type_MASTER_SAMPLE.setShowParents(False)\nsamp_type_MASTER_SAMPLE.setSubcodeUnique(False)\nsamp_type_MASTER_SAMPLE.setAutoGeneratedCode(True)\nsamp_type_MASTER_SAMPLE.setShowParentMetadata(False)\nsamp_type_MASTER_SAMPLE.setGeneratedCodePrefix('BSSE-QGF-MASTER-')\n\n\nsamp_type_RAW_SAMPLE = tr.getOrCreateNewSampleType('RAW_SAMPLE')\nsamp_type_RAW_SAMPLE.setDescription('Child of MASTER')\nsamp_type_RAW_SAMPLE.setListable(True)\nsamp_type_RAW_SAMPLE.setShowContainer(False)\nsamp_type_RAW_SAMPLE.setShowParents(True)\nsamp_type_RAW_SAMPLE.setSubcodeUnique(False)\nsamp_type_RAW_SAMPLE.setAutoGeneratedCode(True)\nsamp_type_RAW_SAMPLE.setShowParentMetadata(True)\nsamp_type_RAW_SAMPLE.setGeneratedCodePrefix('BSSE-QGF-RAW-')\nsamp_type_RAW_SAMPLE.setValidationScript(script_Has_Parents)\n\nprint "Imported 6 Sample Types" \ndata_set_type_ALIGNMENT = tr.getOrCreateNewDataSetType('ALIGNMENT')\ndata_set_type_ALIGNMENT.setDescription('Aligner ouput, ideally bam/sam')\ndata_set_type_ALIGNMENT.setDataSetKind('PHYSICAL')\ndata_set_type_ALIGNMENT.setMainDataSetPattern(None)\ndata_set_type_ALIGNMENT.setMainDataSetPath(None)\ndata_set_type_ALIGNMENT.setDeletionDisallowed(False)\n\n\ndata_set_type_BASECALL_STATS = tr.getOrCreateNewDataSetType('BASECALL_STATS')\ndata_set_type_BASECALL_STATS.setDescription('Base Call Statistics from the Illumina Pipeline (configureBclToFastq.pl)')\ndata_set_type_BASECALL_STATS.setDataSetKind('PHYSICAL')\ndata_set_type_BASECALL_STATS.setMainDataSetPattern('original/.*/.*/Demultiplex_Stats.htm')\ndata_set_type_BASECALL_STATS.setMainDataSetPath(None)\ndata_set_type_BASECALL_STATS.setDeletionDisallowed(False)\n\n\ndata_set_type_BIGWIGGLE = tr.getOrCreateNewDataSetType('BIGWIGGLE')\ndata_set_type_BIGWIGGLE.setDescription('Visualization')\ndata_set_type_BIGWIGGLE.setDataSetKind('PHYSICAL')\ndata_set_type_BIGWIGGLE.setMainDataSetPattern(None)\ndata_set_type_BIGWIGGLE.setMainDataSetPath(None)\ndata_set_type_BIGWIGGLE.setDeletionDisallowed(False)\n\n\ndata_set_type_ELAND_ALIGNMENT = tr.getOrCreateNewDataSetType('ELAND_ALIGNMENT')\ndata_set_type_ELAND_ALIGNMENT.setDescription('Illumina Eland Alignment Output')\ndata_set_type_ELAND_ALIGNMENT.setDataSetKind('PHYSICAL')\ndata_set_type_ELAND_ALIGNMENT.setMainDataSetPattern(None)\ndata_set_type_ELAND_ALIGNMENT.setMainDataSetPath(None)\ndata_set_type_ELAND_ALIGNMENT.setDeletionDisallowed(False)\n\n\ndata_set_type_FASTQ_GZ = tr.getOrCreateNewDataSetType('FASTQ_GZ')\ndata_set_type_FASTQ_GZ.setDescription('Gzipped Fastq file produced by Casava 1.8+')\ndata_set_type_FASTQ_GZ.setDataSetKind('PHYSICAL')\ndata_set_type_FASTQ_GZ.setMainDataSetPattern(None)\ndata_set_type_FASTQ_GZ.setMainDataSetPath(None)\ndata_set_type_FASTQ_GZ.setDeletionDisallowed(False)\n\n\ndata_set_type_ILLUMINA_HISEQ_OUTPUT = tr.getOrCreateNewDataSetType('ILLUMINA_HISEQ_OUTPUT')\ndata_set_type_ILLUMINA_HISEQ_OUTPUT.setDescription('HiSeq2000 Output')\ndata_set_type_ILLUMINA_HISEQ_OUTPUT.setDataSetKind('PHYSICAL')\ndata_set_type_ILLUMINA_HISEQ_OUTPUT.setMainDataSetPattern(None)\ndata_set_type_ILLUMINA_HISEQ_OUTPUT.setMainDataSetPath(None)\ndata_set_type_ILLUMINA_HISEQ_OUTPUT.setDeletionDisallowed(False)\n\n\ndata_set_type_ILLUMINA_MISEQ_OUTPUT = tr.getOrCreateNewDataSetType('ILLUMINA_MISEQ_OUTPUT')\ndata_set_type_ILLUMINA_MISEQ_OUTPUT.setDescription('MiSeq Output')\ndata_set_type_ILLUMINA_MISEQ_OUTPUT.setDataSetKind('PHYSICAL')\ndata_set_type_ILLUMINA_MISEQ_OUTPUT.setMainDataSetPattern(None)\ndata_set_type_ILLUMINA_MISEQ_OUTPUT.setMainDataSetPath(None)\ndata_set_type_ILLUMINA_MISEQ_OUTPUT.setDeletionDisallowed(False)\n\n\ndata_set_type_MACS_OUTPUT = tr.getOrCreateNewDataSetType('MACS_OUTPUT')\ndata_set_type_MACS_OUTPUT.setDescription('MACS Peak Caller output')\ndata_set_type_MACS_OUTPUT.setDataSetKind('PHYSICAL')\ndata_set_type_MACS_OUTPUT.setMainDataSetPattern(None)\ndata_set_type_MACS_OUTPUT.setMainDataSetPath(None)\ndata_set_type_MACS_OUTPUT.setDeletionDisallowed(False)\n\n\ndata_set_type_QUALITY_JPGS = tr.getOrCreateNewDataSetType('QUALITY_JPGS')\ndata_set_type_QUALITY_JPGS.setDescription('R generated Quality plots')\ndata_set_type_QUALITY_JPGS.setDataSetKind('PHYSICAL')\ndata_set_type_QUALITY_JPGS.setMainDataSetPattern(None)\ndata_set_type_QUALITY_JPGS.setMainDataSetPath(None)\ndata_set_type_QUALITY_JPGS.setDeletionDisallowed(False)\n\n\ndata_set_type_QUALITY_PDFS = tr.getOrCreateNewDataSetType('QUALITY_PDFS')\ndata_set_type_QUALITY_PDFS.setDescription('R generated pdfs showing quality data')\ndata_set_type_QUALITY_PDFS.setDataSetKind('PHYSICAL')\ndata_set_type_QUALITY_PDFS.setMainDataSetPattern(None)\ndata_set_type_QUALITY_PDFS.setMainDataSetPath(None)\ndata_set_type_QUALITY_PDFS.setDeletionDisallowed(False)\n\n\ndata_set_type_QUALITY_SVG = tr.getOrCreateNewDataSetType('QUALITY_SVG')\ndata_set_type_QUALITY_SVG.setDescription('R generated Quality plots')\ndata_set_type_QUALITY_SVG.setDataSetKind('PHYSICAL')\ndata_set_type_QUALITY_SVG.setMainDataSetPattern(None)\ndata_set_type_QUALITY_SVG.setMainDataSetPath(None)\ndata_set_type_QUALITY_SVG.setDeletionDisallowed(False)\n\n\ndata_set_type_RUNINFO = tr.getOrCreateNewDataSetType('RUNINFO')\ndata_set_type_RUNINFO.setDescription('Run statstics: Status.html and Status_Files folder')\ndata_set_type_RUNINFO.setDataSetKind('PHYSICAL')\ndata_set_type_RUNINFO.setMainDataSetPattern('original/.*/Data/Status.htm')\ndata_set_type_RUNINFO.setMainDataSetPath(None)\ndata_set_type_RUNINFO.setDeletionDisallowed(False)\n\n\ndata_set_type_THUMBNAILS = tr.getOrCreateNewDataSetType('THUMBNAILS')\ndata_set_type_THUMBNAILS.setDescription('Thumbnails provided by the Illumina software')\ndata_set_type_THUMBNAILS.setDataSetKind('PHYSICAL')\ndata_set_type_THUMBNAILS.setMainDataSetPattern(None)\ndata_set_type_THUMBNAILS.setMainDataSetPath(None)\ndata_set_type_THUMBNAILS.setDeletionDisallowed(False)\n\n\ndata_set_type_TSV = tr.getOrCreateNewDataSetType('TSV')\ndata_set_type_TSV.setDescription('Tab separated files')\ndata_set_type_TSV.setDataSetKind('PHYSICAL')\ndata_set_type_TSV.setMainDataSetPattern(None)\ndata_set_type_TSV.setMainDataSetPath(None)\ndata_set_type_TSV.setDeletionDisallowed(False)\n\n\nprint "Imported 15 Data Set Types" \nprint "Imported 0 Material Types" \nprop_type_AGILENT_KIT = tr.getOrCreateNewPropertyType('AGILENT_KIT', DataType.CONTROLLEDVOCABULARY)\nprop_type_AGILENT_KIT.setLabel('Agilent Kit')\nprop_type_AGILENT_KIT.setManagedInternally(False)\nprop_type_AGILENT_KIT.setInternalNamespace(False)\n\nprop_type_AGILENT_KIT.setVocabulary(vocabulary_AGILENT_KIT)\n\nprop_type_ALIGNMENT_SOFTWARE = tr.getOrCreateNewPropertyType('ALIGNMENT_SOFTWARE', DataType.CONTROLLEDVOCABULARY)\nprop_type_ALIGNMENT_SOFTWARE.setLabel('Alignment software')\nprop_type_ALIGNMENT_SOFTWARE.setManagedInternally(False)\nprop_type_ALIGNMENT_SOFTWARE.setInternalNamespace(False)\n\nprop_type_ALIGNMENT_SOFTWARE.setVocabulary(vocabulary_ALIGNMENT_SOFTWARE)\n\nprop_type_ANALYSIS_FINISHED = tr.getOrCreateNewPropertyType('ANALYSIS_FINISHED', DataType.TIMESTAMP)\nprop_type_ANALYSIS_FINISHED.setLabel('Analysis finished')\nprop_type_ANALYSIS_FINISHED.setManagedInternally(False)\nprop_type_ANALYSIS_FINISHED.setInternalNamespace(False)\n\n\nprop_type_BARCODE_COMPLEXITY_CHECKER = tr.getOrCreateNewPropertyType('BARCODE_COMPLEXITY_CHECKER', DataType.MULTILINE_VARCHAR)\nprop_type_BARCODE_COMPLEXITY_CHECKER.setLabel('Barcode_Complexity_Checker')\nprop_type_BARCODE_COMPLEXITY_CHECKER.setManagedInternally(False)\nprop_type_BARCODE_COMPLEXITY_CHECKER.setInternalNamespace(False)\n\n\nprop_type_BASESCOVERED = tr.getOrCreateNewPropertyType('BASESCOVERED', DataType.INTEGER)\nprop_type_BASESCOVERED.setLabel('bases Covered')\nprop_type_BASESCOVERED.setManagedInternally(False)\nprop_type_BASESCOVERED.setInternalNamespace(False)\n\n\nprop_type_BIOLOGICAL_SAMPLE_ARRIVED = tr.getOrCreateNewPropertyType('BIOLOGICAL_SAMPLE_ARRIVED', DataType.TIMESTAMP)\nprop_type_BIOLOGICAL_SAMPLE_ARRIVED.setLabel('Arrival Date of Biological Sample')\nprop_type_BIOLOGICAL_SAMPLE_ARRIVED.setManagedInternally(False)\nprop_type_BIOLOGICAL_SAMPLE_ARRIVED.setInternalNamespace(False)\n\n\nprop_type_CASAVA_VERSION = tr.getOrCreateNewPropertyType('CASAVA_VERSION', DataType.CONTROLLEDVOCABULARY)\nprop_type_CASAVA_VERSION.setLabel('Casava Version')\nprop_type_CASAVA_VERSION.setManagedInternally(False)\nprop_type_CASAVA_VERSION.setInternalNamespace(False)\n\nprop_type_CASAVA_VERSION.setVocabulary(vocabulary_CASAVA_VERSION)\n\nprop_type_CELL_PLASTICITY_SYSTEMSX = tr.getOrCreateNewPropertyType('CELL_PLASTICITY_SYSTEMSX', DataType.BOOLEAN)\nprop_type_CELL_PLASTICITY_SYSTEMSX.setLabel('Cell Plasticity (SystemsX)')\nprop_type_CELL_PLASTICITY_SYSTEMSX.setManagedInternally(False)\nprop_type_CELL_PLASTICITY_SYSTEMSX.setInternalNamespace(False)\n\n\nprop_type_CHROMCOUNT = tr.getOrCreateNewPropertyType('CHROMCOUNT', DataType.INTEGER)\nprop_type_CHROMCOUNT.setLabel('chrom Count')\nprop_type_CHROMCOUNT.setManagedInternally(False)\nprop_type_CHROMCOUNT.setInternalNamespace(False)\n\n\nprop_type_CLUSTER_GENERATION_KIT_VERSION = tr.getOrCreateNewPropertyType('CLUSTER_GENERATION_KIT_VERSION', DataType.CONTROLLEDVOCABULARY)\nprop_type_CLUSTER_GENERATION_KIT_VERSION.setLabel('CS Generation Kit Version')\nprop_type_CLUSTER_GENERATION_KIT_VERSION.setManagedInternally(False)\nprop_type_CLUSTER_GENERATION_KIT_VERSION.setInternalNamespace(False)\n\nprop_type_CLUSTER_GENERATION_KIT_VERSION.setVocabulary(vocabulary_CLUSTER_GENERATION_KIT_VERSION)\n\nprop_type_CLUSTER_STATION = tr.getOrCreateNewPropertyType('CLUSTER_STATION', DataType.CONTROLLEDVOCABULARY)\nprop_type_CLUSTER_STATION.setLabel('Cluster Station')\nprop_type_CLUSTER_STATION.setManagedInternally(False)\nprop_type_CLUSTER_STATION.setInternalNamespace(False)\n\nprop_type_CLUSTER_STATION.setVocabulary(vocabulary_CLUSTER_STATION)\n\nprop_type_CONCENTRATION = tr.getOrCreateNewPropertyType('CONCENTRATION', DataType.REAL)\nprop_type_CONCENTRATION.setLabel(u'Conc. [ng/\\u03bcl]')\nprop_type_CONCENTRATION.setManagedInternally(False)\nprop_type_CONCENTRATION.setInternalNamespace(False)\n\n\nprop_type_CONCENTRATION_FLOWLANE = tr.getOrCreateNewPropertyType('CONCENTRATION_FLOWLANE', DataType.REAL)\nprop_type_CONCENTRATION_FLOWLANE.setLabel('Concentration in flow lane [pM]')\nprop_type_CONCENTRATION_FLOWLANE.setManagedInternally(False)\nprop_type_CONCENTRATION_FLOWLANE.setInternalNamespace(False)\n\n\nprop_type_CONCENTRATION_ORIGINAL_ILLUMINA = tr.getOrCreateNewPropertyType('CONCENTRATION_ORIGINAL_ILLUMINA', DataType.REAL)\nprop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setLabel(u'Concentration (original) [ng/\\u03bcl]')\nprop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setManagedInternally(False)\nprop_type_CONCENTRATION_ORIGINAL_ILLUMINA.setInternalNamespace(False)\n\n\nprop_type_CONCENTRATION_PREPARED_ILLUMINA = tr.getOrCreateNewPropertyType('CONCENTRATION_PREPARED_ILLUMINA', DataType.REAL)\nprop_type_CONCENTRATION_PREPARED_ILLUMINA.setLabel(u'Concentration (prepared) [ng/\\u03bcl]')\nprop_type_CONCENTRATION_PREPARED_ILLUMINA.setManagedInternally(False)\nprop_type_CONCENTRATION_PREPARED_ILLUMINA.setInternalNamespace(False)\n\n\nprop_type_CONTACT_PERSON_EMAIL = tr.getOrCreateNewPropertyType('CONTACT_PERSON_EMAIL', DataType.VARCHAR)\nprop_type_CONTACT_PERSON_EMAIL.setLabel('Email of Contact Person')\nprop_type_CONTACT_PERSON_EMAIL.setManagedInternally(False)\nprop_type_CONTACT_PERSON_EMAIL.setInternalNamespace(False)\n\n\nprop_type_CONTACT_PERSON_NAME = tr.getOrCreateNewPropertyType('CONTACT_PERSON_NAME', DataType.VARCHAR)\nprop_type_CONTACT_PERSON_NAME.setLabel('Name of Contact Person')\nprop_type_CONTACT_PERSON_NAME.setManagedInternally(False)\nprop_type_CONTACT_PERSON_NAME.setInternalNamespace(False)\n\n\nprop_type_CONTROL_LANE = tr.getOrCreateNewPropertyType('CONTROL_LANE', DataType.CONTROLLEDVOCABULARY)\nprop_type_CONTROL_LANE.setLabel('Control Lane')\nprop_type_CONTROL_LANE.setManagedInternally(False)\nprop_type_CONTROL_LANE.setInternalNamespace(False)\n\nprop_type_CONTROL_LANE.setVocabulary(vocabulary_CONTROL_LANE)\n\nprop_type_CREATED_ON_CS = tr.getOrCreateNewPropertyType('CREATED_ON_CS', DataType.TIMESTAMP)\nprop_type_CREATED_ON_CS.setLabel('Clustering date')\nprop_type_CREATED_ON_CS.setManagedInternally(False)\nprop_type_CREATED_ON_CS.setInternalNamespace(False)\n\n\nprop_type_CS_PROTOCOL_VERSION = tr.getOrCreateNewPropertyType('CS_PROTOCOL_VERSION', DataType.VARCHAR)\nprop_type_CS_PROTOCOL_VERSION.setLabel('CS Protocol Version')\nprop_type_CS_PROTOCOL_VERSION.setManagedInternally(False)\nprop_type_CS_PROTOCOL_VERSION.setInternalNamespace(False)\n\n\nprop_type_CYCLES = tr.getOrCreateNewPropertyType('CYCLES', DataType.INTEGER)\nprop_type_CYCLES.setLabel('Cycles')\nprop_type_CYCLES.setManagedInternally(False)\nprop_type_CYCLES.setInternalNamespace(False)\n\n\nprop_type_DATA_TRANSFERRED = tr.getOrCreateNewPropertyType('DATA_TRANSFERRED', DataType.TIMESTAMP)\nprop_type_DATA_TRANSFERRED.setLabel('Data transferred')\nprop_type_DATA_TRANSFERRED.setManagedInternally(False)\nprop_type_DATA_TRANSFERRED.setInternalNamespace(False)\n\n\nprop_type_DNA_CONCENTRATION_OF_LIBRARY = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_OF_LIBRARY', DataType.INTEGER)\nprop_type_DNA_CONCENTRATION_OF_LIBRARY.setLabel('DNA concentration of library (nM)')\nprop_type_DNA_CONCENTRATION_OF_LIBRARY.setManagedInternally(False)\nprop_type_DNA_CONCENTRATION_OF_LIBRARY.setInternalNamespace(False)\n\n\nprop_type_DNA_CONCENTRATION_POOL = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_POOL', DataType.REAL)\nprop_type_DNA_CONCENTRATION_POOL.setLabel('DNA conc. [nM] - customer value')\nprop_type_DNA_CONCENTRATION_POOL.setManagedInternally(False)\nprop_type_DNA_CONCENTRATION_POOL.setInternalNamespace(False)\n\n\nprop_type_DNA_CONCENTRATION_QGF = tr.getOrCreateNewPropertyType('DNA_CONCENTRATION_QGF', DataType.REAL)\nprop_type_DNA_CONCENTRATION_QGF.setLabel('DNA concentration of Pool [nM]')\nprop_type_DNA_CONCENTRATION_QGF.setManagedInternally(False)\nprop_type_DNA_CONCENTRATION_QGF.setInternalNamespace(False)\n\n\nprop_type_END_TYPE = tr.getOrCreateNewPropertyType('END_TYPE', DataType.CONTROLLEDVOCABULARY)\nprop_type_END_TYPE.setLabel('Paired End / Single Read')\nprop_type_END_TYPE.setManagedInternally(False)\nprop_type_END_TYPE.setInternalNamespace(False)\n\nprop_type_END_TYPE.setVocabulary(vocabulary_END_TYPE)\n\nprop_type_EXPERIMENT_DESIGN = tr.getOrCreateNewPropertyType('EXPERIMENT_DESIGN', DataType.CONTROLLEDVOCABULARY)\nprop_type_EXPERIMENT_DESIGN.setLabel('Experiment Design')\nprop_type_EXPERIMENT_DESIGN.setManagedInternally(False)\nprop_type_EXPERIMENT_DESIGN.setInternalNamespace(False)\n\nprop_type_EXPERIMENT_DESIGN.setVocabulary(vocabulary_EXPERIMENT_DESIGN)\n\nprop_type_EXTERNAL_SAMPLE_NAME = tr.getOrCreateNewPropertyType('EXTERNAL_SAMPLE_NAME', DataType.VARCHAR)\nprop_type_EXTERNAL_SAMPLE_NAME.setLabel('External Sample Name')\nprop_type_EXTERNAL_SAMPLE_NAME.setManagedInternally(False)\nprop_type_EXTERNAL_SAMPLE_NAME.setInternalNamespace(False)\n\n\nprop_type_FLOWCELLTYPE = tr.getOrCreateNewPropertyType('FLOWCELLTYPE', DataType.VARCHAR)\nprop_type_FLOWCELLTYPE.setLabel('Flow Cell Type')\nprop_type_FLOWCELLTYPE.setManagedInternally(False)\nprop_type_FLOWCELLTYPE.setInternalNamespace(False)\n\n\nprop_type_FLOW_CELL_SEQUENCED_ON = tr.getOrCreateNewPropertyType('FLOW_CELL_SEQUENCED_ON', DataType.TIMESTAMP)\nprop_type_FLOW_CELL_SEQUENCED_ON.setLabel('Sequencing started')\nprop_type_FLOW_CELL_SEQUENCED_ON.setManagedInternally(False)\nprop_type_FLOW_CELL_SEQUENCED_ON.setInternalNamespace(False)\n\n\nprop_type_FRAGMENT_SIZE_BASE_PAIRS = tr.getOrCreateNewPropertyType('FRAGMENT_SIZE_BASE_PAIRS', DataType.INTEGER)\nprop_type_FRAGMENT_SIZE_BASE_PAIRS.setLabel('Fragment Size [base pairs]')\nprop_type_FRAGMENT_SIZE_BASE_PAIRS.setManagedInternally(False)\nprop_type_FRAGMENT_SIZE_BASE_PAIRS.setInternalNamespace(False)\n\n\nprop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA = tr.getOrCreateNewPropertyType('FRAGMENT_SIZE_PREPARED_ILLUMINA', DataType.INTEGER)\nprop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setLabel('Fragment Size (prepared) [base (pairs)]')\nprop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setManagedInternally(False)\nprop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA.setInternalNamespace(False)\n\n\nprop_type_ILLUMINA_PIPELINE_VERSION = tr.getOrCreateNewPropertyType('ILLUMINA_PIPELINE_VERSION', DataType.CONTROLLEDVOCABULARY)\nprop_type_ILLUMINA_PIPELINE_VERSION.setLabel('Pipeline Version')\nprop_type_ILLUMINA_PIPELINE_VERSION.setManagedInternally(False)\nprop_type_ILLUMINA_PIPELINE_VERSION.setInternalNamespace(False)\n\nprop_type_ILLUMINA_PIPELINE_VERSION.setVocabulary(vocabulary_PIPELINE_VERSION)\n\nprop_type_INDEX1 = tr.getOrCreateNewPropertyType('INDEX1', DataType.CONTROLLEDVOCABULARY)\nprop_type_INDEX1.setLabel('Index 1')\nprop_type_INDEX1.setManagedInternally(False)\nprop_type_INDEX1.setInternalNamespace(False)\n\nprop_type_INDEX1.setVocabulary(vocabulary_INDEX1)\n\nprop_type_INDEX2 = tr.getOrCreateNewPropertyType('INDEX2', DataType.CONTROLLEDVOCABULARY)\nprop_type_INDEX2.setLabel('Index 2')\nprop_type_INDEX2.setManagedInternally(False)\nprop_type_INDEX2.setInternalNamespace(False)\n\nprop_type_INDEX2.setVocabulary(vocabulary_INDEX2)\n\nprop_type_INDEXREAD = tr.getOrCreateNewPropertyType('INDEXREAD', DataType.INTEGER)\nprop_type_INDEXREAD.setLabel('Length of Index Read1')\nprop_type_INDEXREAD.setManagedInternally(False)\nprop_type_INDEXREAD.setInternalNamespace(False)\n\n\nprop_type_INDEXREAD2 = tr.getOrCreateNewPropertyType('INDEXREAD2', DataType.INTEGER)\nprop_type_INDEXREAD2.setLabel('Length of Index Read2')\nprop_type_INDEXREAD2.setManagedInternally(False)\nprop_type_INDEXREAD2.setInternalNamespace(False)\n\n\nprop_type_INVOICE = tr.getOrCreateNewPropertyType('INVOICE', DataType.BOOLEAN)\nprop_type_INVOICE.setLabel('Invoice sent?')\nprop_type_INVOICE.setManagedInternally(False)\nprop_type_INVOICE.setInternalNamespace(False)\n\n\nprop_type_ISCOMPRESSED = tr.getOrCreateNewPropertyType('ISCOMPRESSED', DataType.BOOLEAN)\nprop_type_ISCOMPRESSED.setLabel('Is Compressed')\nprop_type_ISCOMPRESSED.setManagedInternally(False)\nprop_type_ISCOMPRESSED.setInternalNamespace(False)\n\n\nprop_type_ISSUED_COMMAND = tr.getOrCreateNewPropertyType('ISSUED_COMMAND', DataType.MULTILINE_VARCHAR)\nprop_type_ISSUED_COMMAND.setLabel('Issued Command')\nprop_type_ISSUED_COMMAND.setManagedInternally(False)\nprop_type_ISSUED_COMMAND.setInternalNamespace(False)\n\n\nprop_type_ISSWAPPED = tr.getOrCreateNewPropertyType('ISSWAPPED', DataType.INTEGER)\nprop_type_ISSWAPPED.setLabel('Is byte swapped')\nprop_type_ISSWAPPED.setManagedInternally(False)\nprop_type_ISSWAPPED.setInternalNamespace(False)\n\n\nprop_type_KIT = tr.getOrCreateNewPropertyType('KIT', DataType.CONTROLLEDVOCABULARY)\nprop_type_KIT.setLabel('Library preparation kit')\nprop_type_KIT.setManagedInternally(False)\nprop_type_KIT.setInternalNamespace(False)\n\nprop_type_KIT.setVocabulary(vocabulary_KIT)\n\nprop_type_KIT_PREPARED = tr.getOrCreateNewPropertyType('KIT_PREPARED', DataType.TIMESTAMP)\nprop_type_KIT_PREPARED.setLabel('Sample processed')\nprop_type_KIT_PREPARED.setManagedInternally(False)\nprop_type_KIT_PREPARED.setInternalNamespace(False)\n\n\nprop_type_LANECOUNT = tr.getOrCreateNewPropertyType('LANECOUNT', DataType.INTEGER)\nprop_type_LANECOUNT.setLabel('Lane Count')\nprop_type_LANECOUNT.setManagedInternally(False)\nprop_type_LANECOUNT.setInternalNamespace(False)\n\n\nprop_type_LIBRARY_PROCESSING_FAILED = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_FAILED', DataType.BOOLEAN)\nprop_type_LIBRARY_PROCESSING_FAILED.setLabel('Library processing failed')\nprop_type_LIBRARY_PROCESSING_FAILED.setManagedInternally(False)\nprop_type_LIBRARY_PROCESSING_FAILED.setInternalNamespace(False)\n\n\nprop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_POSSIBLE_YES_NO', DataType.CONTROLLEDVOCABULARY)\nprop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setLabel('Library processing possible')\nprop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setManagedInternally(False)\nprop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setInternalNamespace(False)\n\nprop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setVocabulary(vocabulary_YES_NO)\n\nprop_type_LIBRARY_PROCESSING_SUCCESSFUL = tr.getOrCreateNewPropertyType('LIBRARY_PROCESSING_SUCCESSFUL', DataType.BOOLEAN)\nprop_type_LIBRARY_PROCESSING_SUCCESSFUL.setLabel('Library processing successful')\nprop_type_LIBRARY_PROCESSING_SUCCESSFUL.setManagedInternally(False)\nprop_type_LIBRARY_PROCESSING_SUCCESSFUL.setInternalNamespace(False)\n\n\nprop_type_LOT = tr.getOrCreateNewPropertyType('LOT', DataType.INTEGER)\nprop_type_LOT.setLabel('Kit Lot #')\nprop_type_LOT.setManagedInternally(False)\nprop_type_LOT.setInternalNamespace(False)\n\n\nprop_type_MACS_VERSION = tr.getOrCreateNewPropertyType('MACS_VERSION', DataType.CONTROLLEDVOCABULARY)\nprop_type_MACS_VERSION.setLabel('MACS VERSION')\nprop_type_MACS_VERSION.setManagedInternally(False)\nprop_type_MACS_VERSION.setInternalNamespace(False)\n\nprop_type_MACS_VERSION.setVocabulary(vocabulary_MACS_VERSION)\n\nprop_type_MAPPED_READS = tr.getOrCreateNewPropertyType('MAPPED_READS', DataType.INTEGER)\nprop_type_MAPPED_READS.setLabel('Mapped reads')\nprop_type_MAPPED_READS.setManagedInternally(False)\nprop_type_MAPPED_READS.setInternalNamespace(False)\n\n\nprop_type_MAX = tr.getOrCreateNewPropertyType('MAX', DataType.REAL)\nprop_type_MAX.setLabel('Maximum')\nprop_type_MAX.setManagedInternally(False)\nprop_type_MAX.setInternalNamespace(False)\n\n\nprop_type_MEAN = tr.getOrCreateNewPropertyType('MEAN', DataType.REAL)\nprop_type_MEAN.setLabel('Mean')\nprop_type_MEAN.setManagedInternally(False)\nprop_type_MEAN.setInternalNamespace(False)\n\n\nprop_type_MIN = tr.getOrCreateNewPropertyType('MIN', DataType.REAL)\nprop_type_MIN.setLabel('Minimum')\nprop_type_MIN.setManagedInternally(False)\nprop_type_MIN.setInternalNamespace(False)\n\n\nprop_type_MISMATCH_IN_INDEX = tr.getOrCreateNewPropertyType('MISMATCH_IN_INDEX', DataType.CONTROLLEDVOCABULARY)\nprop_type_MISMATCH_IN_INDEX.setLabel('Mismatch in Index')\nprop_type_MISMATCH_IN_INDEX.setManagedInternally(False)\nprop_type_MISMATCH_IN_INDEX.setInternalNamespace(False)\n\nprop_type_MISMATCH_IN_INDEX.setVocabulary(vocabulary_MISMATCH_IN_INDEX)\n\nprop_type_NANO_DROP = tr.getOrCreateNewPropertyType('NANO_DROP', DataType.CONTROLLEDVOCABULARY)\nprop_type_NANO_DROP.setLabel('Nano Drop')\nprop_type_NANO_DROP.setManagedInternally(False)\nprop_type_NANO_DROP.setInternalNamespace(False)\n\nprop_type_NANO_DROP.setVocabulary(vocabulary_NANO_DROP)\n\nprop_type_NCBI_ORGANISM_TAXONOMY = tr.getOrCreateNewPropertyType('NCBI_ORGANISM_TAXONOMY', DataType.CONTROLLEDVOCABULARY)\nprop_type_NCBI_ORGANISM_TAXONOMY.setLabel('Organism (NCBI Taxonomy)')\nprop_type_NCBI_ORGANISM_TAXONOMY.setManagedInternally(False)\nprop_type_NCBI_ORGANISM_TAXONOMY.setInternalNamespace(False)\n\nprop_type_NCBI_ORGANISM_TAXONOMY.setVocabulary(vocabulary_NCBI_TAXONOMY)\n\nprop_type_NM_DNA = tr.getOrCreateNewPropertyType('NM_DNA', DataType.REAL)\nprop_type_NM_DNA.setLabel('Calculated DNA concentration of library (nM)')\nprop_type_NM_DNA.setManagedInternally(False)\nprop_type_NM_DNA.setInternalNamespace(False)\n\n\nprop_type_NOTES = tr.getOrCreateNewPropertyType('NOTES', DataType.MULTILINE_VARCHAR)\nprop_type_NOTES.setLabel('Notes')\nprop_type_NOTES.setManagedInternally(False)\nprop_type_NOTES.setInternalNamespace(False)\n\n\nprop_type_NUMBER_OF_ATTACHMENTS = tr.getOrCreateNewPropertyType('NUMBER_OF_ATTACHMENTS', DataType.INTEGER)\nprop_type_NUMBER_OF_ATTACHMENTS.setLabel('Number of Attachments')\nprop_type_NUMBER_OF_ATTACHMENTS.setManagedInternally(False)\nprop_type_NUMBER_OF_ATTACHMENTS.setInternalNamespace(False)\n\n\nprop_type_PAIRED_END_KIT = tr.getOrCreateNewPropertyType('PAIRED_END_KIT', DataType.VARCHAR)\nprop_type_PAIRED_END_KIT.setLabel('Paired End Kit')\nprop_type_PAIRED_END_KIT.setManagedInternally(False)\nprop_type_PAIRED_END_KIT.setInternalNamespace(False)\n\n\nprop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX = tr.getOrCreateNewPropertyType('PERCENTAGE_ONE_MISMATCH_READS_INDEX', DataType.REAL)\nprop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setLabel('% One Mismatch Reads (Index)')\nprop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setManagedInternally(False)\nprop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setInternalNamespace(False)\n\n\nprop_type_PERCENTAGE_PASSED_FILTERING = tr.getOrCreateNewPropertyType('PERCENTAGE_PASSED_FILTERING', DataType.REAL)\nprop_type_PERCENTAGE_PASSED_FILTERING.setLabel('% Passes Illumina Filtering (PF)')\nprop_type_PERCENTAGE_PASSED_FILTERING.setManagedInternally(False)\nprop_type_PERCENTAGE_PASSED_FILTERING.setInternalNamespace(False)\n\n\nprop_type_PERCENTAGE_PERFECT_INDEX_READS = tr.getOrCreateNewPropertyType('PERCENTAGE_PERFECT_INDEX_READS', DataType.REAL)\nprop_type_PERCENTAGE_PERFECT_INDEX_READS.setLabel('% Perfect Index Reads')\nprop_type_PERCENTAGE_PERFECT_INDEX_READS.setManagedInternally(False)\nprop_type_PERCENTAGE_PERFECT_INDEX_READS.setInternalNamespace(False)\n\n\nprop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE = tr.getOrCreateNewPropertyType('PERCENTAGE_RAW_CLUSTERS_PER_LANE', DataType.REAL)\nprop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setLabel('% of raw clusters per lane')\nprop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setManagedInternally(False)\nprop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setInternalNamespace(False)\n\n\nprop_type_PREPARED_BY = tr.getOrCreateNewPropertyType('PREPARED_BY', DataType.VARCHAR)\nprop_type_PREPARED_BY.setLabel('Prepared by')\nprop_type_PREPARED_BY.setManagedInternally(False)\nprop_type_PREPARED_BY.setInternalNamespace(False)\n\n\nprop_type_PRIMARYDATASIZE = tr.getOrCreateNewPropertyType('PRIMARYDATASIZE', DataType.INTEGER)\nprop_type_PRIMARYDATASIZE.setLabel('primary Data Size')\nprop_type_PRIMARYDATASIZE.setManagedInternally(False)\nprop_type_PRIMARYDATASIZE.setInternalNamespace(False)\n\n\nprop_type_PRIMARYINDEXSIZE = tr.getOrCreateNewPropertyType('PRIMARYINDEXSIZE', DataType.INTEGER)\nprop_type_PRIMARYINDEXSIZE.setLabel('primary Index Size')\nprop_type_PRIMARYINDEXSIZE.setManagedInternally(False)\nprop_type_PRIMARYINDEXSIZE.setInternalNamespace(False)\n\n\nprop_type_PRINCIPAL_INVESTIGATOR_EMAIL = tr.getOrCreateNewPropertyType('PRINCIPAL_INVESTIGATOR_EMAIL', DataType.VARCHAR)\nprop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setLabel('Email of Principal Investigator')\nprop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setManagedInternally(False)\nprop_type_PRINCIPAL_INVESTIGATOR_EMAIL.setInternalNamespace(False)\n\n\nprop_type_PRINCIPAL_INVESTIGATOR_NAME = tr.getOrCreateNewPropertyType('PRINCIPAL_INVESTIGATOR_NAME', DataType.VARCHAR)\nprop_type_PRINCIPAL_INVESTIGATOR_NAME.setLabel('Name of Principal Investigator')\nprop_type_PRINCIPAL_INVESTIGATOR_NAME.setManagedInternally(False)\nprop_type_PRINCIPAL_INVESTIGATOR_NAME.setInternalNamespace(False)\n\n\nprop_type_QC_AT_DBSSE = tr.getOrCreateNewPropertyType('QC_AT_DBSSE', DataType.CONTROLLEDVOCABULARY)\nprop_type_QC_AT_DBSSE.setLabel('QC at D-BSSE')\nprop_type_QC_AT_DBSSE.setManagedInternally(False)\nprop_type_QC_AT_DBSSE.setInternalNamespace(False)\n\nprop_type_QC_AT_DBSSE.setVocabulary(vocabulary_YES_NO)\n\nprop_type_QC_REQUIRED = tr.getOrCreateNewPropertyType('QC_REQUIRED', DataType.CONTROLLEDVOCABULARY)\nprop_type_QC_REQUIRED.setLabel('QC required')\nprop_type_QC_REQUIRED.setManagedInternally(False)\nprop_type_QC_REQUIRED.setInternalNamespace(False)\n\nprop_type_QC_REQUIRED.setVocabulary(vocabulary_YES_NO)\n\nprop_type_RUNNINGTIME = tr.getOrCreateNewPropertyType('RUNNINGTIME', DataType.VARCHAR)\nprop_type_RUNNINGTIME.setLabel('Running Time')\nprop_type_RUNNINGTIME.setManagedInternally(False)\nprop_type_RUNNINGTIME.setInternalNamespace(False)\n\n\nprop_type_RUN_FOLDER_NAME = tr.getOrCreateNewPropertyType('RUN_FOLDER_NAME', DataType.VARCHAR)\nprop_type_RUN_FOLDER_NAME.setLabel('Run Folder Name')\nprop_type_RUN_FOLDER_NAME.setManagedInternally(False)\nprop_type_RUN_FOLDER_NAME.setInternalNamespace(False)\n\n\nprop_type_SAMPLE_KIND = tr.getOrCreateNewPropertyType('SAMPLE_KIND', DataType.CONTROLLEDVOCABULARY)\nprop_type_SAMPLE_KIND.setLabel('Sample Kind')\nprop_type_SAMPLE_KIND.setManagedInternally(False)\nprop_type_SAMPLE_KIND.setInternalNamespace(False)\n\nprop_type_SAMPLE_KIND.setVocabulary(vocabulary_SAMPLE_TYPE)\n\nprop_type_SAMTOOLS_FLAGSTAT = tr.getOrCreateNewPropertyType('SAMTOOLS_FLAGSTAT', DataType.MULTILINE_VARCHAR)\nprop_type_SAMTOOLS_FLAGSTAT.setLabel('Samtools Flagstat Output')\nprop_type_SAMTOOLS_FLAGSTAT.setManagedInternally(False)\nprop_type_SAMTOOLS_FLAGSTAT.setInternalNamespace(False)\n\n\nprop_type_SBS_KIT = tr.getOrCreateNewPropertyType('SBS_KIT', DataType.VARCHAR)\nprop_type_SBS_KIT.setLabel('SBS Kit')\nprop_type_SBS_KIT.setManagedInternally(False)\nprop_type_SBS_KIT.setInternalNamespace(False)\n\n\nprop_type_SBS_SEQUENCING_KIT_VERSION = tr.getOrCreateNewPropertyType('SBS_SEQUENCING_KIT_VERSION', DataType.CONTROLLEDVOCABULARY)\nprop_type_SBS_SEQUENCING_KIT_VERSION.setLabel('SBS Sequencing Kit Version')\nprop_type_SBS_SEQUENCING_KIT_VERSION.setManagedInternally(False)\nprop_type_SBS_SEQUENCING_KIT_VERSION.setInternalNamespace(False)\n\nprop_type_SBS_SEQUENCING_KIT_VERSION.setVocabulary(vocabulary_SBS_SEQUENCING_KIT_VERSION)\n\nprop_type_SEQUENCER = tr.getOrCreateNewPropertyType('SEQUENCER', DataType.CONTROLLEDVOCABULARY)\nprop_type_SEQUENCER.setLabel('Sequencer')\nprop_type_SEQUENCER.setManagedInternally(False)\nprop_type_SEQUENCER.setInternalNamespace(False)\n\nprop_type_SEQUENCER.setVocabulary(vocabulary_SEQUENCER)\n\nprop_type_SEQUENCER_FINISHED = tr.getOrCreateNewPropertyType('SEQUENCER_FINISHED', DataType.TIMESTAMP)\nprop_type_SEQUENCER_FINISHED.setLabel('Sequencer finished')\nprop_type_SEQUENCER_FINISHED.setManagedInternally(False)\nprop_type_SEQUENCER_FINISHED.setInternalNamespace(False)\n\n\nprop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG = tr.getOrCreateNewPropertyType('STARTING_AMOUNT_OF_SAMPLE_IN_NG', DataType.REAL)\nprop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setLabel('Starting amount of sample (ng)')\nprop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setManagedInternally(False)\nprop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setInternalNamespace(False)\n\n\nprop_type_STD = tr.getOrCreateNewPropertyType('STD', DataType.REAL)\nprop_type_STD.setLabel('Standard deviation')\nprop_type_STD.setManagedInternally(False)\nprop_type_STD.setInternalNamespace(False)\n\n\nprop_type_SURFACECOUNT = tr.getOrCreateNewPropertyType('SURFACECOUNT', DataType.INTEGER)\nprop_type_SURFACECOUNT.setLabel('Surface Count')\nprop_type_SURFACECOUNT.setManagedInternally(False)\nprop_type_SURFACECOUNT.setInternalNamespace(False)\n\n\nprop_type_SWATHCOUNT = tr.getOrCreateNewPropertyType('SWATHCOUNT', DataType.INTEGER)\nprop_type_SWATHCOUNT.setLabel('Swath Count')\nprop_type_SWATHCOUNT.setManagedInternally(False)\nprop_type_SWATHCOUNT.setInternalNamespace(False)\n\n\nprop_type_TILECOUNT = tr.getOrCreateNewPropertyType('TILECOUNT', DataType.INTEGER)\nprop_type_TILECOUNT.setLabel('Tile Count')\nprop_type_TILECOUNT.setManagedInternally(False)\nprop_type_TILECOUNT.setInternalNamespace(False)\n\n\nprop_type_TOTAL_READS = tr.getOrCreateNewPropertyType('TOTAL_READS', DataType.INTEGER)\nprop_type_TOTAL_READS.setLabel('Total reads')\nprop_type_TOTAL_READS.setManagedInternally(False)\nprop_type_TOTAL_READS.setInternalNamespace(False)\n\n\nprop_type_UL_DNA = tr.getOrCreateNewPropertyType('UL_DNA', DataType.REAL)\nprop_type_UL_DNA.setLabel('Calculated ul DNA for 2nM stock')\nprop_type_UL_DNA.setManagedInternally(False)\nprop_type_UL_DNA.setInternalNamespace(False)\n\n\nprop_type_UL_EB = tr.getOrCreateNewPropertyType('UL_EB', DataType.REAL)\nprop_type_UL_EB.setLabel('Calculated ul EB for 2nM stock ')\nprop_type_UL_EB.setManagedInternally(False)\nprop_type_UL_EB.setInternalNamespace(False)\n\n\nprop_type_UL_STOCK = tr.getOrCreateNewPropertyType('UL_STOCK', DataType.INTEGER)\nprop_type_UL_STOCK.setLabel('ul of 2nM stock')\nprop_type_UL_STOCK.setManagedInternally(False)\nprop_type_UL_STOCK.setInternalNamespace(False)\n\n\nprop_type_UNIQUE_BARCODES = tr.getOrCreateNewPropertyType('UNIQUE_BARCODES', DataType.VARCHAR)\nprop_type_UNIQUE_BARCODES.setLabel('Unique Barcodes in Pool?')\nprop_type_UNIQUE_BARCODES.setManagedInternally(False)\nprop_type_UNIQUE_BARCODES.setInternalNamespace(False)\n\n\nprop_type_VERSION = tr.getOrCreateNewPropertyType('VERSION', DataType.VARCHAR)\nprop_type_VERSION.setLabel('Version')\nprop_type_VERSION.setManagedInternally(False)\nprop_type_VERSION.setInternalNamespace(False)\n\n\nprop_type_YIELD_MBASES = tr.getOrCreateNewPropertyType('YIELD_MBASES', DataType.INTEGER)\nprop_type_YIELD_MBASES.setLabel('Yield(Mbases)')\nprop_type_YIELD_MBASES.setManagedInternally(False)\nprop_type_YIELD_MBASES.setInternalNamespace(False)\n\n\nprop_type_ZOOMLEVELS = tr.getOrCreateNewPropertyType('ZOOMLEVELS', DataType.INTEGER)\nprop_type_ZOOMLEVELS.setLabel('zoom Levels')\nprop_type_ZOOMLEVELS.setManagedInternally(False)\nprop_type_ZOOMLEVELS.setInternalNamespace(False)\n\n\nprint "Imported 92 Property Types" \nassignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_ALIGNMENT_SOFTWARE)\nassignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setSection(None)\nassignment_DATA_SET_ALIGNMENT_ALIGNMENT_SOFTWARE.setPositionInForms(3)\n\nassignment_DATA_SET_ALIGNMENT_VERSION = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_VERSION)\nassignment_DATA_SET_ALIGNMENT_VERSION.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_VERSION.setSection(None)\nassignment_DATA_SET_ALIGNMENT_VERSION.setPositionInForms(4)\n\nassignment_DATA_SET_ALIGNMENT_NOTES = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_NOTES)\nassignment_DATA_SET_ALIGNMENT_NOTES.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_NOTES.setSection(None)\nassignment_DATA_SET_ALIGNMENT_NOTES.setPositionInForms(5)\n\nassignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_SAMTOOLS_FLAGSTAT)\nassignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setSection(None)\nassignment_DATA_SET_ALIGNMENT_SAMTOOLS_FLAGSTAT.setPositionInForms(6)\n\nassignment_DATA_SET_ALIGNMENT_MAPPED_READS = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_MAPPED_READS)\nassignment_DATA_SET_ALIGNMENT_MAPPED_READS.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_MAPPED_READS.setSection(None)\nassignment_DATA_SET_ALIGNMENT_MAPPED_READS.setPositionInForms(7)\n\nassignment_DATA_SET_ALIGNMENT_TOTAL_READS = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_TOTAL_READS)\nassignment_DATA_SET_ALIGNMENT_TOTAL_READS.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_TOTAL_READS.setSection(None)\nassignment_DATA_SET_ALIGNMENT_TOTAL_READS.setPositionInForms(8)\n\nassignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND = tr.assignPropertyType(data_set_type_ALIGNMENT, prop_type_ISSUED_COMMAND)\nassignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setMandatory(False)\nassignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setSection(None)\nassignment_DATA_SET_ALIGNMENT_ISSUED_COMMAND.setPositionInForms(9)\n\nassignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX = tr.assignPropertyType(data_set_type_BASECALL_STATS, prop_type_MISMATCH_IN_INDEX)\nassignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setMandatory(False)\nassignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setSection(None)\nassignment_DATA_SET_BASECALL_STATS_MISMATCH_IN_INDEX.setPositionInForms(3)\n\nassignment_DATA_SET_BIGWIGGLE_NOTES = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_NOTES)\nassignment_DATA_SET_BIGWIGGLE_NOTES.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_NOTES.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_NOTES.setPositionInForms(3)\n\nassignment_DATA_SET_BIGWIGGLE_VERSION = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_VERSION)\nassignment_DATA_SET_BIGWIGGLE_VERSION.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_VERSION.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_VERSION.setPositionInForms(4)\n\nassignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ISCOMPRESSED)\nassignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_ISCOMPRESSED.setPositionInForms(5)\n\nassignment_DATA_SET_BIGWIGGLE_ISSWAPPED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ISSWAPPED)\nassignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_ISSWAPPED.setPositionInForms(6)\n\nassignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_PRIMARYDATASIZE)\nassignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_PRIMARYDATASIZE.setPositionInForms(7)\n\nassignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_PRIMARYINDEXSIZE)\nassignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_PRIMARYINDEXSIZE.setPositionInForms(8)\n\nassignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_ZOOMLEVELS)\nassignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_ZOOMLEVELS.setPositionInForms(9)\n\nassignment_DATA_SET_BIGWIGGLE_CHROMCOUNT = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_CHROMCOUNT)\nassignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_CHROMCOUNT.setPositionInForms(10)\n\nassignment_DATA_SET_BIGWIGGLE_BASESCOVERED = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_BASESCOVERED)\nassignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_BASESCOVERED.setPositionInForms(11)\n\nassignment_DATA_SET_BIGWIGGLE_MEAN = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MEAN)\nassignment_DATA_SET_BIGWIGGLE_MEAN.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_MEAN.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_MEAN.setPositionInForms(12)\n\nassignment_DATA_SET_BIGWIGGLE_MIN = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MIN)\nassignment_DATA_SET_BIGWIGGLE_MIN.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_MIN.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_MIN.setPositionInForms(13)\n\nassignment_DATA_SET_BIGWIGGLE_MAX = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_MAX)\nassignment_DATA_SET_BIGWIGGLE_MAX.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_MAX.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_MAX.setPositionInForms(14)\n\nassignment_DATA_SET_BIGWIGGLE_STD = tr.assignPropertyType(data_set_type_BIGWIGGLE, prop_type_STD)\nassignment_DATA_SET_BIGWIGGLE_STD.setMandatory(False)\nassignment_DATA_SET_BIGWIGGLE_STD.setSection(None)\nassignment_DATA_SET_BIGWIGGLE_STD.setPositionInForms(15)\n\nassignment_DATA_SET_FASTQ_GZ_NOTES = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_NOTES)\nassignment_DATA_SET_FASTQ_GZ_NOTES.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_NOTES.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_NOTES.setPositionInForms(3)\n\nassignment_DATA_SET_FASTQ_GZ_YIELD_MBASES = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_YIELD_MBASES)\nassignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_YIELD_MBASES.setPositionInForms(4)\n\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_PASSED_FILTERING)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PASSED_FILTERING.setPositionInForms(5)\n\nassignment_DATA_SET_FASTQ_GZ_INDEX1 = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_INDEX1)\nassignment_DATA_SET_FASTQ_GZ_INDEX1.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_INDEX1.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_INDEX1.setPositionInForms(6)\n\nassignment_DATA_SET_FASTQ_GZ_INDEX2 = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_INDEX2)\nassignment_DATA_SET_FASTQ_GZ_INDEX2.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_INDEX2.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_INDEX2.setPositionInForms(7)\n\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_RAW_CLUSTERS_PER_LANE)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_RAW_CLUSTERS_PER_LANE.setPositionInForms(8)\n\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_PERFECT_INDEX_READS)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_PERFECT_INDEX_READS.setPositionInForms(9)\n\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX = tr.assignPropertyType(data_set_type_FASTQ_GZ, prop_type_PERCENTAGE_ONE_MISMATCH_READS_INDEX)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setMandatory(False)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setSection(None)\nassignment_DATA_SET_FASTQ_GZ_PERCENTAGE_ONE_MISMATCH_READS_INDEX.setPositionInForms(10)\n\nassignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN = tr.assignPropertyType(exp_type_HT_SEQUENCING, prop_type_EXPERIMENT_DESIGN)\nassignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setMandatory(False)\nassignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setSection(None)\nassignment_EXPERIMENT_HT_SEQUENCING_EXPERIMENT_DESIGN.setPositionInForms(3)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_RUN_FOLDER_NAME)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUN_FOLDER_NAME.setPositionInForms(1)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SEQUENCER)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER.setPositionInForms(5)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_END_TYPE)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_END_TYPE.setPositionInForms(7)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_FLOW_CELL_SEQUENCED_ON)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOW_CELL_SEQUENCED_ON.setPositionInForms(8)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SEQUENCER_FINISHED)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SEQUENCER_FINISHED.setPositionInForms(9)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_RUNNINGTIME)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setPositionInForms(10)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setScriptName('Diff_time')\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setDynamic(True)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setManaged(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_RUNNINGTIME.setShownEdit(False)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_ILLUMINA_PIPELINE_VERSION)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ILLUMINA_PIPELINE_VERSION.setPositionInForms(11)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CYCLES)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CYCLES.setPositionInForms(14)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_INDEXREAD)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD.setPositionInForms(17)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2 = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_INDEXREAD2)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_INDEXREAD2.setPositionInForms(18)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CONTROL_LANE)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CONTROL_LANE.setPositionInForms(19)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_FLOWCELLTYPE)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_FLOWCELLTYPE.setPositionInForms(20)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_LANECOUNT)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_LANECOUNT.setPositionInForms(21)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SURFACECOUNT)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SURFACECOUNT.setPositionInForms(22)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SWATHCOUNT)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SWATHCOUNT.setPositionInForms(23)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_TILECOUNT)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_TILECOUNT.setPositionInForms(24)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SBS_KIT)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_KIT.setPositionInForms(25)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_PAIRED_END_KIT)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_PAIRED_END_KIT.setPositionInForms(26)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CLUSTER_STATION)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION.setSection('Clustering')\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_STATION.setPositionInForms(27)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CREATED_ON_CS)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS.setSection('Clustering')\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CREATED_ON_CS.setPositionInForms(28)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CS_PROTOCOL_VERSION)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION.setSection('Clustering')\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CS_PROTOCOL_VERSION.setPositionInForms(29)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_CLUSTER_GENERATION_KIT_VERSION)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION.setSection('Clustering')\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_CLUSTER_GENERATION_KIT_VERSION.setPositionInForms(30)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_SBS_SEQUENCING_KIT_VERSION)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_SBS_SEQUENCING_KIT_VERSION.setPositionInForms(32)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_ANALYSIS_FINISHED)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_ANALYSIS_FINISHED.setPositionInForms(34)\n\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_CELL, prop_type_NOTES)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_CELL_NOTES.setPositionInForms(35)\n\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_CONCENTRATION_FLOWLANE)\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_CONCENTRATION_FLOWLANE.setPositionInForms(20)\n\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES = tr.assignPropertyType(samp_type_ILLUMINA_FLOW_LANE, prop_type_NOTES)\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setMandatory(False)\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setSection(None)\nassignment_SAMPLE_ILLUMINA_FLOW_LANE_NOTES.setPositionInForms(23)\n\nassignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION = tr.assignPropertyType(data_set_type_ILLUMINA_HISEQ_OUTPUT, prop_type_CASAVA_VERSION)\nassignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setMandatory(False)\nassignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setSection(None)\nassignment_DATA_SET_ILLUMINA_HISEQ_OUTPUT_CASAVA_VERSION.setPositionInForms(3)\n\nassignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_LIBRARY, prop_type_EXTERNAL_SAMPLE_NAME)\nassignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME.setMandatory(False)\nassignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME.setSection(None)\nassignment_SAMPLE_LIBRARY_EXTERNAL_SAMPLE_NAME.setPositionInForms(1)\n\nassignment_SAMPLE_LIBRARY_KIT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_KIT)\nassignment_SAMPLE_LIBRARY_KIT.setMandatory(False)\nassignment_SAMPLE_LIBRARY_KIT.setSection(None)\nassignment_SAMPLE_LIBRARY_KIT.setPositionInForms(2)\n\nassignment_SAMPLE_LIBRARY_PREPARED_BY = tr.assignPropertyType(samp_type_LIBRARY, prop_type_PREPARED_BY)\nassignment_SAMPLE_LIBRARY_PREPARED_BY.setMandatory(False)\nassignment_SAMPLE_LIBRARY_PREPARED_BY.setSection(None)\nassignment_SAMPLE_LIBRARY_PREPARED_BY.setPositionInForms(3)\n\nassignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG = tr.assignPropertyType(samp_type_LIBRARY, prop_type_STARTING_AMOUNT_OF_SAMPLE_IN_NG)\nassignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setMandatory(False)\nassignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setSection(None)\nassignment_SAMPLE_LIBRARY_STARTING_AMOUNT_OF_SAMPLE_IN_NG.setPositionInForms(4)\n\nassignment_SAMPLE_LIBRARY_INDEX1 = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INDEX1)\nassignment_SAMPLE_LIBRARY_INDEX1.setMandatory(False)\nassignment_SAMPLE_LIBRARY_INDEX1.setSection(None)\nassignment_SAMPLE_LIBRARY_INDEX1.setPositionInForms(7)\n\nassignment_SAMPLE_LIBRARY_INDEX2 = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INDEX2)\nassignment_SAMPLE_LIBRARY_INDEX2.setMandatory(False)\nassignment_SAMPLE_LIBRARY_INDEX2.setSection(None)\nassignment_SAMPLE_LIBRARY_INDEX2.setPositionInForms(8)\n\nassignment_SAMPLE_LIBRARY_LOT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LOT)\nassignment_SAMPLE_LIBRARY_LOT.setMandatory(False)\nassignment_SAMPLE_LIBRARY_LOT.setSection(None)\nassignment_SAMPLE_LIBRARY_LOT.setPositionInForms(9)\n\nassignment_SAMPLE_LIBRARY_AGILENT_KIT = tr.assignPropertyType(samp_type_LIBRARY, prop_type_AGILENT_KIT)\nassignment_SAMPLE_LIBRARY_AGILENT_KIT.setMandatory(False)\nassignment_SAMPLE_LIBRARY_AGILENT_KIT.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_AGILENT_KIT.setPositionInForms(10)\n\nassignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA = tr.assignPropertyType(samp_type_LIBRARY, prop_type_FRAGMENT_SIZE_PREPARED_ILLUMINA)\nassignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA.setMandatory(False)\nassignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_FRAGMENT_SIZE_PREPARED_ILLUMINA.setPositionInForms(11)\n\nassignment_SAMPLE_LIBRARY_NANO_DROP = tr.assignPropertyType(samp_type_LIBRARY, prop_type_NANO_DROP)\nassignment_SAMPLE_LIBRARY_NANO_DROP.setMandatory(False)\nassignment_SAMPLE_LIBRARY_NANO_DROP.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_NANO_DROP.setPositionInForms(12)\n\nassignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA = tr.assignPropertyType(samp_type_LIBRARY, prop_type_CONCENTRATION_PREPARED_ILLUMINA)\nassignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setMandatory(False)\nassignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_CONCENTRATION_PREPARED_ILLUMINA.setPositionInForms(13)\n\nassignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY = tr.assignPropertyType(samp_type_LIBRARY, prop_type_DNA_CONCENTRATION_OF_LIBRARY)\nassignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setMandatory(False)\nassignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_DNA_CONCENTRATION_OF_LIBRARY.setPositionInForms(14)\n\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LIBRARY_PROCESSING_SUCCESSFUL)\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setMandatory(False)\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_SUCCESSFUL.setPositionInForms(15)\n\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_LIBRARY_PROCESSING_FAILED)\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED.setMandatory(False)\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_LIBRARY_PROCESSING_FAILED.setPositionInForms(16)\n\nassignment_SAMPLE_LIBRARY_QC_AT_DBSSE = tr.assignPropertyType(samp_type_LIBRARY, prop_type_QC_AT_DBSSE)\nassignment_SAMPLE_LIBRARY_QC_AT_DBSSE.setMandatory(False)\nassignment_SAMPLE_LIBRARY_QC_AT_DBSSE.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_QC_AT_DBSSE.setPositionInForms(17)\n\nassignment_SAMPLE_LIBRARY_KIT_PREPARED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_KIT_PREPARED)\nassignment_SAMPLE_LIBRARY_KIT_PREPARED.setMandatory(False)\nassignment_SAMPLE_LIBRARY_KIT_PREPARED.setSection(None)\nassignment_SAMPLE_LIBRARY_KIT_PREPARED.setPositionInForms(18)\n\nassignment_SAMPLE_LIBRARY_DATA_TRANSFERRED = tr.assignPropertyType(samp_type_LIBRARY, prop_type_DATA_TRANSFERRED)\nassignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setMandatory(False)\nassignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setSection(None)\nassignment_SAMPLE_LIBRARY_DATA_TRANSFERRED.setPositionInForms(19)\n\nassignment_SAMPLE_LIBRARY_INVOICE = tr.assignPropertyType(samp_type_LIBRARY, prop_type_INVOICE)\nassignment_SAMPLE_LIBRARY_INVOICE.setMandatory(False)\nassignment_SAMPLE_LIBRARY_INVOICE.setSection(None)\nassignment_SAMPLE_LIBRARY_INVOICE.setPositionInForms(20)\n\nassignment_SAMPLE_LIBRARY_NOTES = tr.assignPropertyType(samp_type_LIBRARY, prop_type_NOTES)\nassignment_SAMPLE_LIBRARY_NOTES.setMandatory(False)\nassignment_SAMPLE_LIBRARY_NOTES.setSection(None)\nassignment_SAMPLE_LIBRARY_NOTES.setPositionInForms(33)\n\nassignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_EXTERNAL_SAMPLE_NAME)\nassignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME.setSection(None)\nassignment_SAMPLE_LIBRARY_POOL_EXTERNAL_SAMPLE_NAME.setPositionInForms(1)\n\nassignment_SAMPLE_LIBRARY_POOL_PREPARED_BY = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_PREPARED_BY)\nassignment_SAMPLE_LIBRARY_POOL_PREPARED_BY.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_PREPARED_BY.setSection(None)\nassignment_SAMPLE_LIBRARY_POOL_PREPARED_BY.setPositionInForms(2)\n\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_DNA_CONCENTRATION_POOL)\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL.setSection(None)\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_POOL.setPositionInForms(3)\n\nassignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_QC_REQUIRED)\nassignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED.setSection(None)\nassignment_SAMPLE_LIBRARY_POOL_QC_REQUIRED.setPositionInForms(4)\n\nassignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_AGILENT_KIT)\nassignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_POOL_AGILENT_KIT.setPositionInForms(5)\n\nassignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_FRAGMENT_SIZE_BASE_PAIRS)\nassignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_POOL_FRAGMENT_SIZE_BASE_PAIRS.setPositionInForms(6)\n\nassignment_SAMPLE_LIBRARY_POOL_NANO_DROP = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_NANO_DROP)\nassignment_SAMPLE_LIBRARY_POOL_NANO_DROP.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_NANO_DROP.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_POOL_NANO_DROP.setPositionInForms(7)\n\nassignment_SAMPLE_LIBRARY_POOL_CONCENTRATION = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_CONCENTRATION)\nassignment_SAMPLE_LIBRARY_POOL_CONCENTRATION.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_CONCENTRATION.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_POOL_CONCENTRATION.setPositionInForms(8)\n\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_DNA_CONCENTRATION_QGF)\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF.setSection('QC Data')\nassignment_SAMPLE_LIBRARY_POOL_DNA_CONCENTRATION_QGF.setPositionInForms(9)\n\nassignment_SAMPLE_LIBRARY_POOL_INVOICE = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_INVOICE)\nassignment_SAMPLE_LIBRARY_POOL_INVOICE.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_INVOICE.setSection(None)\nassignment_SAMPLE_LIBRARY_POOL_INVOICE.setPositionInForms(10)\n\nassignment_SAMPLE_LIBRARY_POOL_NOTES = tr.assignPropertyType(samp_type_LIBRARY_POOL, prop_type_NOTES)\nassignment_SAMPLE_LIBRARY_POOL_NOTES.setMandatory(False)\nassignment_SAMPLE_LIBRARY_POOL_NOTES.setSection(None)\nassignment_SAMPLE_LIBRARY_POOL_NOTES.setPositionInForms(11)\n\nassignment_DATA_SET_MACS_OUTPUT_MACS_VERSION = tr.assignPropertyType(data_set_type_MACS_OUTPUT, prop_type_MACS_VERSION)\nassignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setMandatory(False)\nassignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setSection(None)\nassignment_DATA_SET_MACS_OUTPUT_MACS_VERSION.setPositionInForms(3)\n\nassignment_DATA_SET_MACS_OUTPUT_NOTES = tr.assignPropertyType(data_set_type_MACS_OUTPUT, prop_type_NOTES)\nassignment_DATA_SET_MACS_OUTPUT_NOTES.setMandatory(False)\nassignment_DATA_SET_MACS_OUTPUT_NOTES.setSection(None)\nassignment_DATA_SET_MACS_OUTPUT_NOTES.setPositionInForms(4)\n\nassignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_BIOLOGICAL_SAMPLE_ARRIVED)\nassignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_BIOLOGICAL_SAMPLE_ARRIVED.setPositionInForms(1)\n\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_CONTACT_PERSON_EMAIL)\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_EMAIL.setPositionInForms(2)\n\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_CONTACT_PERSON_NAME)\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_CONTACT_PERSON_NAME.setPositionInForms(3)\n\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_PRINCIPAL_INVESTIGATOR_EMAIL)\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_EMAIL.setPositionInForms(4)\n\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_PRINCIPAL_INVESTIGATOR_NAME)\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_PRINCIPAL_INVESTIGATOR_NAME.setPositionInForms(5)\n\nassignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_NCBI_ORGANISM_TAXONOMY)\nassignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_NCBI_ORGANISM_TAXONOMY.setPositionInForms(7)\n\nassignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_SAMPLE_KIND)\nassignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND.setMandatory(True)\nassignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_SAMPLE_KIND.setPositionInForms(21)\n\nassignment_SAMPLE_MASTER_SAMPLE_NOTES = tr.assignPropertyType(samp_type_MASTER_SAMPLE, prop_type_NOTES)\nassignment_SAMPLE_MASTER_SAMPLE_NOTES.setMandatory(False)\nassignment_SAMPLE_MASTER_SAMPLE_NOTES.setSection(None)\nassignment_SAMPLE_MASTER_SAMPLE_NOTES.setPositionInForms(22)\n\nassignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_EXTERNAL_SAMPLE_NAME)\nassignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME.setMandatory(False)\nassignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME.setSection(None)\nassignment_SAMPLE_RAW_SAMPLE_EXTERNAL_SAMPLE_NAME.setPositionInForms(1)\n\nassignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_CONCENTRATION_ORIGINAL_ILLUMINA)\nassignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA.setMandatory(False)\nassignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA.setSection(None)\nassignment_SAMPLE_RAW_SAMPLE_CONCENTRATION_ORIGINAL_ILLUMINA.setPositionInForms(4)\n\nassignment_SAMPLE_RAW_SAMPLE_PREPARED_BY = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_PREPARED_BY)\nassignment_SAMPLE_RAW_SAMPLE_PREPARED_BY.setMandatory(False)\nassignment_SAMPLE_RAW_SAMPLE_PREPARED_BY.setSection(None)\nassignment_SAMPLE_RAW_SAMPLE_PREPARED_BY.setPositionInForms(8)\n\nassignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_KIT_PREPARED)\nassignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED.setMandatory(False)\nassignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED.setSection(None)\nassignment_SAMPLE_RAW_SAMPLE_KIT_PREPARED.setPositionInForms(9)\n\nassignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_LIBRARY_PROCESSING_POSSIBLE_YES_NO)\nassignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setMandatory(False)\nassignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setSection(None)\nassignment_SAMPLE_RAW_SAMPLE_LIBRARY_PROCESSING_POSSIBLE_YES_NO.setPositionInForms(10)\n\nassignment_SAMPLE_RAW_SAMPLE_NOTES = tr.assignPropertyType(samp_type_RAW_SAMPLE, prop_type_NOTES)\nassignment_SAMPLE_RAW_SAMPLE_NOTES.setMandatory(False)\nassignment_SAMPLE_RAW_SAMPLE_NOTES.setSection(None)\nassignment_SAMPLE_RAW_SAMPLE_NOTES.setPositionInForms(13)\n\nprint "Imported 104 Property Assignments" \nprint "Imported 0 External DMSs" \nprint ("Import of Master Data finished.") \n +2 proteomics 1 2013-04-12 10:05:45.583358+02 import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType\n\ntr = service.transaction()\n\nvocabulary_TREATMENT_TYPE = tr.getOrCreateNewVocabulary('TREATMENT_TYPE')\nvocabulary_TREATMENT_TYPE.setDescription('Type of treatment of a biological sample.')\nvocabulary_TREATMENT_TYPE.setUrlTemplate(None)\nvocabulary_TREATMENT_TYPE.setManagedInternally(False)\nvocabulary_TREATMENT_TYPE.setInternalNamespace(False)\nvocabulary_TREATMENT_TYPE.setChosenFromList(True)\n\nexp_type_MS_SEARCH = tr.getOrCreateNewExperimentType('MS_SEARCH')\nexp_type_MS_SEARCH.setDescription('MS_SEARCH experiment')\n\nsamp_type_MS_INJECTION = tr.getOrCreateNewSampleType('MS_INJECTION')\nsamp_type_MS_INJECTION.setDescription('injection of a biological sample into a MS')\nsamp_type_MS_INJECTION.setListable(True)\nsamp_type_MS_INJECTION.setSubcodeUnique(False)\nsamp_type_MS_INJECTION.setAutoGeneratedCode(False)\nsamp_type_MS_INJECTION.setGeneratedCodePrefix('S')\n\nsamp_type_SEARCH = tr.getOrCreateNewSampleType('SEARCH')\nsamp_type_SEARCH.setDescription('pointer to an MS_INJECTION sample used as placeholder for searches')\nsamp_type_SEARCH.setListable(True)\nsamp_type_SEARCH.setSubcodeUnique(False)\nsamp_type_SEARCH.setAutoGeneratedCode(False)\nsamp_type_SEARCH.setGeneratedCodePrefix('S')\n\ndata_set_type_PROT_RESULT = tr.getOrCreateNewDataSetType('PROT_RESULT')\ndata_set_type_PROT_RESULT.setDescription('protXML file')\ndata_set_type_PROT_RESULT.setContainerType(False)\n\n +3 screening 4 2013-04-12 10:05:46.102969+02 import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType\n\ntr = service.transaction()\n\nfile_type_PNG = tr.getOrCreateNewFileFormatType('PNG')\nfile_type_PNG.setDescription(None)\n\nfile_type_UNKNOWN = tr.getOrCreateNewFileFormatType('UNKNOWN')\nfile_type_UNKNOWN.setDescription('Unknown file format')\n\nvocabulary_PLATE_GEOMETRY = tr.getOrCreateNewVocabulary('PLATE_GEOMETRY')\nvocabulary_PLATE_GEOMETRY.setDescription('The geometry or dimensions of a plate')\nvocabulary_PLATE_GEOMETRY.setUrlTemplate(None)\nvocabulary_PLATE_GEOMETRY.setManagedInternally(True)\nvocabulary_PLATE_GEOMETRY.setInternalNamespace(True)\nvocabulary_PLATE_GEOMETRY.setChosenFromList(True)\n\nvocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8 = tr.createNewVocabularyTerm('48_WELLS_6X8')\nvocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8.setDescription(None)\nvocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8.setLabel('48 Wells, 6x8')\nvocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8.setOrdinal(5)\nvocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_48_WELLS_6X8)\n\nvocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6 = tr.createNewVocabularyTerm('24_WELLS_4X6')\nvocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6.setDescription(None)\nvocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6.setLabel('24 Wells, 4x6')\nvocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6.setOrdinal(4)\nvocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_24_WELLS_4X6)\n\nvocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48 = tr.createNewVocabularyTerm('1536_WELLS_32X48')\nvocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48.setDescription(None)\nvocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48.setLabel('1536 Wells, 32x48')\nvocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48.setOrdinal(3)\nvocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_1536_WELLS_32X48)\n\nvocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12 = tr.createNewVocabularyTerm('96_WELLS_8X12')\nvocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12.setDescription(None)\nvocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12.setLabel('96 Wells, 8x12')\nvocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12.setOrdinal(2)\nvocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_96_WELLS_8X12)\n\nvocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24 = tr.createNewVocabularyTerm('384_WELLS_16X24')\nvocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24.setDescription(None)\nvocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24.setLabel('384 Wells, 16x24')\nvocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24.setOrdinal(1)\nvocabulary_PLATE_GEOMETRY.addTerm(vocabulary_term_PLATE_GEOMETRY_384_WELLS_16X24)\n\nsamp_type_CONTROL_WELL = tr.getOrCreateNewSampleType('CONTROL_WELL')\nsamp_type_CONTROL_WELL.setDescription(None)\nsamp_type_CONTROL_WELL.setListable(False)\nsamp_type_CONTROL_WELL.setSubcodeUnique(False)\nsamp_type_CONTROL_WELL.setAutoGeneratedCode(False)\nsamp_type_CONTROL_WELL.setGeneratedCodePrefix('C')\n\nsamp_type_LIBRARY = tr.getOrCreateNewSampleType('LIBRARY')\nsamp_type_LIBRARY.setDescription(None)\nsamp_type_LIBRARY.setListable(False)\nsamp_type_LIBRARY.setSubcodeUnique(False)\nsamp_type_LIBRARY.setAutoGeneratedCode(False)\nsamp_type_LIBRARY.setGeneratedCodePrefix('L')\n\nsamp_type_PLATE = tr.getOrCreateNewSampleType('PLATE')\nsamp_type_PLATE.setDescription('Cell Plate')\nsamp_type_PLATE.setListable(True)\nsamp_type_PLATE.setSubcodeUnique(False)\nsamp_type_PLATE.setAutoGeneratedCode(False)\nsamp_type_PLATE.setGeneratedCodePrefix('S')\n\nsamp_type_SIRNA_WELL = tr.getOrCreateNewSampleType('SIRNA_WELL')\nsamp_type_SIRNA_WELL.setDescription(None)\nsamp_type_SIRNA_WELL.setListable(False)\nsamp_type_SIRNA_WELL.setSubcodeUnique(False)\nsamp_type_SIRNA_WELL.setAutoGeneratedCode(False)\nsamp_type_SIRNA_WELL.setGeneratedCodePrefix('O')\n\ndata_set_type_HCS_ANALYSIS_WELL_FEATURES = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_WELL_FEATURES')\ndata_set_type_HCS_ANALYSIS_WELL_FEATURES.setDescription('HCS image analysis well feature vectors.')\ndata_set_type_HCS_ANALYSIS_WELL_FEATURES.setContainerType(False)\n\ndata_set_type_HCS_IMAGE_OVERVIEW = tr.getOrCreateNewDataSetType('HCS_IMAGE_OVERVIEW')\ndata_set_type_HCS_IMAGE_OVERVIEW.setDescription('Overview High Content Screening Images. Generated from raw images.')\ndata_set_type_HCS_IMAGE_OVERVIEW.setContainerType(False)\n\ndata_set_type_HCS_IMAGE_RAW = tr.getOrCreateNewDataSetType('HCS_IMAGE_RAW')\ndata_set_type_HCS_IMAGE_RAW.setDescription('Raw High Content Screening Images')\ndata_set_type_HCS_IMAGE_RAW.setContainerType(False)\n\ndata_set_type_HCS_IMAGE_SEGMENTATION = tr.getOrCreateNewDataSetType('HCS_IMAGE_SEGMENTATION')\ndata_set_type_HCS_IMAGE_SEGMENTATION.setDescription('HCS Segmentation Images (overlays).')\ndata_set_type_HCS_IMAGE_SEGMENTATION.setContainerType(False)\n\ndata_set_type_HCS_IMAGE_CONTAINER_RAW = tr.getOrCreateNewDataSetType('HCS_IMAGE_CONTAINER_RAW')\ndata_set_type_HCS_IMAGE_CONTAINER_RAW.setDescription('Container for HCS images of different resolutions (raw, overviews, thumbnails).')\ndata_set_type_HCS_IMAGE_CONTAINER_RAW.setContainerType(True)\n\ndata_set_type_HCS_ANALYSIS_FEATURES_LIST = tr.getOrCreateNewDataSetType('HCS_ANALYSIS_FEATURES_LIST')\ndata_set_type_HCS_ANALYSIS_FEATURES_LIST.setDescription('The list (or group) of features. The subset of features from feature vectors.')\ndata_set_type_HCS_ANALYSIS_FEATURES_LIST.setContainerType(False)\n\nmaterial_type_COMPOUND = tr.getOrCreateNewMaterialType('COMPOUND')\nmaterial_type_COMPOUND.setDescription('Compound')\n\nmaterial_type_CONTROL = tr.getOrCreateNewMaterialType('CONTROL')\nmaterial_type_CONTROL.setDescription('Control of a control layout')\n\nmaterial_type_GENE = tr.getOrCreateNewMaterialType('GENE')\nmaterial_type_GENE.setDescription('Gene')\n\nmaterial_type_SIRNA = tr.getOrCreateNewMaterialType('SIRNA')\nmaterial_type_SIRNA.setDescription('Oligo nucleotide')\n\nprop_type_ANALYSIS_PROCEDURE = tr.getOrCreateNewPropertyType('ANALYSIS_PROCEDURE', DataType.VARCHAR)\nprop_type_ANALYSIS_PROCEDURE.setLabel('Analysis procedure')\nprop_type_ANALYSIS_PROCEDURE.setManagedInternally(False)\nprop_type_ANALYSIS_PROCEDURE.setInternalNamespace(True)\n\nprop_type_RESOLUTION = tr.getOrCreateNewPropertyType('RESOLUTION', DataType.VARCHAR)\nprop_type_RESOLUTION.setLabel('Resolution')\nprop_type_RESOLUTION.setManagedInternally(False)\nprop_type_RESOLUTION.setInternalNamespace(True)\n\nprop_type_PLATE_GEOMETRY = tr.getOrCreateNewPropertyType('PLATE_GEOMETRY', DataType.CONTROLLEDVOCABULARY)\nprop_type_PLATE_GEOMETRY.setLabel('Plate Geometry')\nprop_type_PLATE_GEOMETRY.setManagedInternally(True)\nprop_type_PLATE_GEOMETRY.setInternalNamespace(True)\nprop_type_PLATE_GEOMETRY.setVocabulary(vocabulary_PLATE_GEOMETRY)\n\nprop_type_CONTROL = tr.getOrCreateNewPropertyType('CONTROL', DataType.MATERIAL)\nprop_type_CONTROL.setLabel('Control')\nprop_type_CONTROL.setManagedInternally(True)\nprop_type_CONTROL.setInternalNamespace(False)\nprop_type_CONTROL.setMaterialType(material_type_CONTROL)\n\n# Already exists in the database\nprop_type_DESCRIPTION = tr.getPropertyType('DESCRIPTION')\n\nprop_type_GENE = tr.getOrCreateNewPropertyType('GENE', DataType.MATERIAL)\nprop_type_GENE.setLabel('Gene')\nprop_type_GENE.setManagedInternally(True)\nprop_type_GENE.setInternalNamespace(False)\nprop_type_GENE.setMaterialType(material_type_GENE)\n\nprop_type_GENE_SYMBOLS = tr.getOrCreateNewPropertyType('GENE_SYMBOLS', DataType.VARCHAR)\nprop_type_GENE_SYMBOLS.setLabel('Gene symbols')\nprop_type_GENE_SYMBOLS.setManagedInternally(True)\nprop_type_GENE_SYMBOLS.setInternalNamespace(False)\n\nprop_type_INHIBITOR_OF = tr.getOrCreateNewPropertyType('INHIBITOR_OF', DataType.MATERIAL)\nprop_type_INHIBITOR_OF.setLabel('Inhibitor Of')\nprop_type_INHIBITOR_OF.setManagedInternally(True)\nprop_type_INHIBITOR_OF.setInternalNamespace(False)\nprop_type_INHIBITOR_OF.setMaterialType(material_type_GENE)\n\nprop_type_LIBRARY_ID = tr.getOrCreateNewPropertyType('LIBRARY_ID', DataType.VARCHAR)\nprop_type_LIBRARY_ID.setLabel('Library ID')\nprop_type_LIBRARY_ID.setManagedInternally(True)\nprop_type_LIBRARY_ID.setInternalNamespace(False)\n\nprop_type_NUCLEOTIDE_SEQUENCE = tr.getOrCreateNewPropertyType('NUCLEOTIDE_SEQUENCE', DataType.VARCHAR)\nprop_type_NUCLEOTIDE_SEQUENCE.setLabel('Nucleotide Sequence')\nprop_type_NUCLEOTIDE_SEQUENCE.setManagedInternally(True)\nprop_type_NUCLEOTIDE_SEQUENCE.setInternalNamespace(False)\n\nprop_type_SIRNA = tr.getOrCreateNewPropertyType('SIRNA', DataType.MATERIAL)\nprop_type_SIRNA.setLabel('siRNA')\nprop_type_SIRNA.setManagedInternally(True)\nprop_type_SIRNA.setInternalNamespace(False)\nprop_type_SIRNA.setMaterialType(material_type_SIRNA)\n\nassignment_MATERIAL_COMPOUND_DESCRIPTION = tr.assignPropertyType(material_type_COMPOUND, prop_type_DESCRIPTION)\nassignment_MATERIAL_COMPOUND_DESCRIPTION.setMandatory(False)\nassignment_MATERIAL_COMPOUND_DESCRIPTION.setSection(None)\nassignment_MATERIAL_COMPOUND_DESCRIPTION.setPositionInForms(1)\n\nassignment_MATERIAL_CONTROL_DESCRIPTION = tr.assignPropertyType(material_type_CONTROL, prop_type_DESCRIPTION)\nassignment_MATERIAL_CONTROL_DESCRIPTION.setMandatory(False)\nassignment_MATERIAL_CONTROL_DESCRIPTION.setSection(None)\nassignment_MATERIAL_CONTROL_DESCRIPTION.setPositionInForms(1)\n\nassignment_SAMPLE_CONTROL_WELL_CONTROL = tr.assignPropertyType(samp_type_CONTROL_WELL, prop_type_CONTROL)\nassignment_SAMPLE_CONTROL_WELL_CONTROL.setMandatory(False)\nassignment_SAMPLE_CONTROL_WELL_CONTROL.setSection(None)\nassignment_SAMPLE_CONTROL_WELL_CONTROL.setPositionInForms(1)\n\nassignment_MATERIAL_GENE_DESCRIPTION = tr.assignPropertyType(material_type_GENE, prop_type_DESCRIPTION)\nassignment_MATERIAL_GENE_DESCRIPTION.setMandatory(False)\nassignment_MATERIAL_GENE_DESCRIPTION.setSection(None)\nassignment_MATERIAL_GENE_DESCRIPTION.setPositionInForms(2)\n\nassignment_MATERIAL_GENE_GENE_SYMBOLS = tr.assignPropertyType(material_type_GENE, prop_type_GENE_SYMBOLS)\nassignment_MATERIAL_GENE_GENE_SYMBOLS.setMandatory(False)\nassignment_MATERIAL_GENE_GENE_SYMBOLS.setSection(None)\nassignment_MATERIAL_GENE_GENE_SYMBOLS.setPositionInForms(4)\n\nassignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION = tr.assignPropertyType(data_set_type_HCS_IMAGE_OVERVIEW, prop_type_RESOLUTION)\nassignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION.setMandatory(False)\nassignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION.setSection(None)\nassignment_DATA_SET_HCS_IMAGE_OVERVIEW_RESOLUTION.setPositionInForms(1)\n\nassignment_SAMPLE_PLATE_PLATE_GEOMETRY = tr.assignPropertyType(samp_type_PLATE, prop_type_PLATE_GEOMETRY)\nassignment_SAMPLE_PLATE_PLATE_GEOMETRY.setMandatory(True)\nassignment_SAMPLE_PLATE_PLATE_GEOMETRY.setSection(None)\nassignment_SAMPLE_PLATE_PLATE_GEOMETRY.setPositionInForms(1)\n\nassignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE = tr.assignPropertyType(material_type_SIRNA, prop_type_NUCLEOTIDE_SEQUENCE)\nassignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE.setMandatory(True)\nassignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE.setSection(None)\nassignment_MATERIAL_SIRNA_NUCLEOTIDE_SEQUENCE.setPositionInForms(1)\n\nassignment_MATERIAL_SIRNA_DESCRIPTION = tr.assignPropertyType(material_type_SIRNA, prop_type_DESCRIPTION)\nassignment_MATERIAL_SIRNA_DESCRIPTION.setMandatory(False)\nassignment_MATERIAL_SIRNA_DESCRIPTION.setSection(None)\nassignment_MATERIAL_SIRNA_DESCRIPTION.setPositionInForms(3)\n\nassignment_MATERIAL_SIRNA_INHIBITOR_OF = tr.assignPropertyType(material_type_SIRNA, prop_type_INHIBITOR_OF)\nassignment_MATERIAL_SIRNA_INHIBITOR_OF.setMandatory(True)\nassignment_MATERIAL_SIRNA_INHIBITOR_OF.setSection(None)\nassignment_MATERIAL_SIRNA_INHIBITOR_OF.setPositionInForms(4)\n\nassignment_MATERIAL_SIRNA_LIBRARY_ID = tr.assignPropertyType(material_type_SIRNA, prop_type_LIBRARY_ID)\nassignment_MATERIAL_SIRNA_LIBRARY_ID.setMandatory(False)\nassignment_MATERIAL_SIRNA_LIBRARY_ID.setSection(None)\nassignment_MATERIAL_SIRNA_LIBRARY_ID.setPositionInForms(5)\n\nassignment_SAMPLE_SIRNA_WELL_SIRNA = tr.assignPropertyType(samp_type_SIRNA_WELL, prop_type_SIRNA)\nassignment_SAMPLE_SIRNA_WELL_SIRNA.setMandatory(False)\nassignment_SAMPLE_SIRNA_WELL_SIRNA.setSection(None)\nassignment_SAMPLE_SIRNA_WELL_SIRNA.setPositionInForms(1)\n\nassignment_SAMPLE_SIRNA_WELL_GENE = tr.assignPropertyType(samp_type_SIRNA_WELL, prop_type_GENE)\nassignment_SAMPLE_SIRNA_WELL_GENE.setMandatory(False)\nassignment_SAMPLE_SIRNA_WELL_GENE.setSection(None)\nassignment_SAMPLE_SIRNA_WELL_GENE.setPositionInForms(2)\n +\. + + +-- +-- Data for Name: data_all; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_all (id, code, dsty_id, dast_id, expe_id, data_producer_code, production_timestamp, samp_id, registration_timestamp, pers_id_registerer, is_placeholder, is_valid, modification_timestamp, is_derived, ctnr_order, ctnr_id, del_id, orig_del, pers_id_modifier, version) FROM stdin; +3 20130412142205843-196 18 1 2 \N \N 2 2013-04-12 14:31:30.714563+02 \N f f 2013-04-12 14:31:31.717+02 t 1 6 \N \N 2 1 +5 20130412142543232-197 18 1 2 \N \N 2 2013-04-12 14:31:30.714563+02 \N f f 2013-04-12 14:31:32.421+02 t 2 6 \N \N 2 1 +2 20130412142942295-198 18 1 2 \N \N 2 2013-04-12 14:31:30.714563+02 \N f f 2013-04-12 14:31:31.106+02 t 3 6 \N \N 2 1 +6 20130412143121081-200 21 1 2 \N \N 2 2013-04-12 14:31:30.714563+02 \N f f 2013-04-16 14:13:16.634+02 f \N \N \N \N 3 0 +10 20130412152038345-381 21 1 3 \N \N 173 2013-04-12 15:20:49.056891+02 \N f f 2013-04-12 15:20:50.204+02 f \N \N \N \N 2 0 +8 20130412151710024-379 18 1 3 \N \N 173 2013-04-12 15:20:49.056891+02 \N f f 2013-04-12 15:20:49.452+02 t 1 10 \N \N 2 1 +9 20130412152036861-380 19 1 3 \N \N 173 2013-04-12 15:20:49.056891+02 \N f f 2013-04-12 15:20:49.869+02 f 2 10 \N \N 2 1 +12 20130412153118625-384 20 1 2 \N \N 2 2013-04-12 15:31:23.376258+02 \N f f 2013-04-12 15:31:23.741+02 t 1 13 \N \N 2 1 +4 20130412143119901-199 19 1 2 \N \N 2 2013-04-12 14:31:30.714563+02 \N f f 2013-04-16 14:13:16.532+02 f 4 6 \N \N 3 1 +21 20130415093804724-403 1 2 6 \N \N 345 2013-04-15 09:38:05.462023+02 \N f f 2013-04-15 10:47:57.983+02 f \N \N \N \N 3 2 +22 20130415100158230-407 1 2 6 \N \N \N 2013-04-15 10:01:58.792459+02 \N f f 2013-04-15 10:48:23.222+02 f \N \N \N \N 3 1 +23 20130415100238098-408 1 2 6 \N \N \N 2013-04-15 10:02:38.543438+02 \N f f 2013-04-15 10:49:15.769+02 f \N \N \N \N 3 1 +13 20130412153119864-385 24 1 2 \N \N 2 2013-04-12 15:31:23.376258+02 \N f f 2013-04-16 14:13:16.633+02 f \N \N \N \N 3 0 +30 20130417094937144-429 26 2 5 \N \N 350 2013-04-17 09:49:41.124317+02 \N f f 2013-04-17 09:49:42.458+02 f \N \N \N \N 2 0 +29 20130417094934693-427 27 2 5 \N \N 350 2013-04-17 09:49:41.124317+02 \N f f 2013-04-17 09:49:42.056+02 t 1 30 \N \N 2 1 +28 20130417094936021-428 23 2 5 \N \N 350 2013-04-17 09:49:41.124317+02 \N f f 2013-04-17 09:49:41.525+02 f 2 30 \N \N 2 1 +24 20130415100308111-409 1 2 6 \N \N \N 2013-04-15 10:03:08.563355+02 \N f f 2013-04-15 10:49:33.428+02 f \N \N \N \N 2 8 +31 20130424111751432-431 22 1 2 \N \N \N 2013-04-24 11:17:53.33839+02 \N f f 2013-04-24 11:17:54.489+02 f 1 17 \N \N 2 1 +32 20130424111751209-430 22 1 2 \N \N \N 2013-04-24 11:17:53.33839+02 \N f f 2013-04-24 11:17:54.49+02 f 3 17 \N \N 2 1 +17 20130412153659994-391 25 1 2 \N \N 2 2013-04-12 15:37:02.416612+02 \N f f 2013-04-24 11:17:54.49+02 f \N \N \N \N 2 0 +16 20130412153659945-390 17 1 2 \N \N \N 2013-04-12 15:37:02.416612+02 \N f f 2013-04-24 11:17:54.49+02 t 2 17 \N \N 2 2 +\. + + +-- +-- Data for Name: data_set_properties; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_properties (id, ds_id, dstpt_id, value, cvte_id, mate_prop_id, pers_id_registerer, registration_timestamp, pers_id_author, modification_timestamp) FROM stdin; +1 2 33 256x256 \N \N 2 2013-04-12 14:31:30.714563+02 2 2013-04-12 14:31:31.313+02 +2 3 33 64x64 \N \N 2 2013-04-12 14:31:30.714563+02 2 2013-04-12 14:31:31.882+02 +3 5 33 128x128 \N \N 2 2013-04-12 14:31:30.714563+02 2 2013-04-12 14:31:32.573+02 +4 8 33 64x64 \N \N 2 2013-04-12 15:20:49.056891+02 2 2013-04-12 15:20:49.663+02 +5 17 34 analysis1 \N \N 2 2013-04-12 15:37:02.416612+02 2 2013-04-12 15:37:03.259+02 +6 21 35 403 description \N \N 3 2013-04-15 10:47:57.344675+02 3 2013-04-15 10:47:58.015+02 +7 22 35 407 description \N \N 3 2013-04-15 10:48:22.393671+02 3 2013-04-15 10:48:23.231+02 +8 23 35 408 description \N \N 3 2013-04-15 10:49:15.032821+02 3 2013-04-15 10:49:15.778+02 +9 24 35 409 description \N \N 3 2013-04-15 10:49:32.695241+02 3 2013-04-15 10:49:33.44+02 +11 29 36 128x128 \N \N 2 2013-04-17 09:49:41.124317+02 2 2013-04-17 09:49:42.255+02 +\. + + +-- +-- Data for Name: data_set_properties_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_properties_history (id, ds_id, dstpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) FROM stdin; +\. + + +-- +-- Data for Name: data_set_relationships_all; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_relationships_all (data_id_parent, data_id_child, del_id, pers_id_author, registration_timestamp, modification_timestamp) FROM stdin; +22 21 \N 3 2013-04-15 10:03:32.831227+02 2013-04-15 10:03:33.602+02 +21 23 \N 3 2013-04-15 10:04:25.873311+02 2013-04-15 10:04:26.652+02 +21 24 \N 3 2013-04-15 10:04:37.375119+02 2013-04-15 10:04:38.213+02 +6 13 \N 3 2013-04-16 14:13:15.674925+02 2013-04-16 14:13:16.684+02 +\. + + +-- +-- Data for Name: data_set_relationships_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_relationships_history (id, main_data_id, relation_type, expe_id, samp_id, data_id, entity_perm_id, pers_id_author, valid_from_timestamp, valid_until_timestamp) FROM stdin; +2 2 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 14:31:31.106+02 \N +3 3 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 14:31:31.717+02 \N +4 4 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 14:31:32.074+02 \N +5 5 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 14:31:32.421+02 \N +6 6 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 14:31:32.79+02 \N +7 6 CONTAINER \N \N 3 20130412142205843-196 2 2013-04-12 14:31:31.717+02 \N +8 3 CONTAINED \N \N 6 20130412143121081-200 2 2013-04-12 14:31:31.717+02 \N +9 6 CONTAINER \N \N 5 20130412142543232-197 2 2013-04-12 14:31:32.421+02 \N +10 5 CONTAINED \N \N 6 20130412143121081-200 2 2013-04-12 14:31:32.421+02 \N +11 6 CONTAINER \N \N 2 20130412142942295-198 2 2013-04-12 14:31:31.106+02 \N +12 2 CONTAINED \N \N 6 20130412143121081-200 2 2013-04-12 14:31:31.106+02 \N +13 6 CONTAINER \N \N 4 20130412143119901-199 2 2013-04-12 14:31:32.074+02 \N +14 4 CONTAINED \N \N 6 20130412143121081-200 2 2013-04-12 14:31:32.074+02 \N +16 8 OWNED \N 173 \N 20130412150557128-205 2 2013-04-12 15:20:49.452+02 \N +17 9 OWNED \N 173 \N 20130412150557128-205 2 2013-04-12 15:20:49.869+02 \N +18 10 OWNED \N 173 \N 20130412150557128-205 2 2013-04-12 15:20:50.204+02 \N +19 10 CONTAINER \N \N 8 20130412151710024-379 2 2013-04-12 15:20:49.452+02 \N +20 8 CONTAINED \N \N 10 20130412152038345-381 2 2013-04-12 15:20:49.452+02 \N +21 10 CONTAINER \N \N 9 20130412152036861-380 2 2013-04-12 15:20:49.869+02 \N +22 9 CONTAINED \N \N 10 20130412152038345-381 2 2013-04-12 15:20:49.869+02 \N +24 12 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 15:31:23.741+02 \N +25 13 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 15:31:24.338+02 \N +28 13 CONTAINER \N \N 12 20130412153118625-384 2 2013-04-12 15:31:23.741+02 \N +29 12 CONTAINED \N \N 13 20130412153119864-385 2 2013-04-12 15:31:23.741+02 \N +32 16 OWNED 2 \N \N 20130412105232616-2 2 2013-04-12 15:37:02.716+02 \N +33 17 OWNED \N 2 \N 20130412140147735-20 2 2013-04-12 15:37:03.109+02 \N +34 17 CONTAINER \N \N 16 20130412153659945-390 2 2013-04-12 15:37:02.716+02 \N +35 16 CONTAINED \N \N 17 20130412153659994-391 2 2013-04-12 15:37:02.716+02 \N +42 22 OWNED 6 \N \N 20130415091745099-401 2 2013-04-15 10:01:59.104+02 \N +43 23 OWNED 6 \N \N 20130415091745099-401 2 2013-04-15 10:02:38.835+02 \N +44 24 OWNED 6 \N \N 20130415091745099-401 2 2013-04-15 10:03:08.932+02 \N +45 22 PARENT \N \N 21 20130415093804724-403 3 2013-04-15 10:03:33.602+02 \N +46 21 CHILD \N \N 22 20130415100158230-407 3 2013-04-15 10:03:33.602+02 \N +47 21 PARENT \N \N 23 20130415100238098-408 3 2013-04-15 10:04:26.652+02 \N +48 23 CHILD \N \N 21 20130415093804724-403 3 2013-04-15 10:04:26.652+02 \N +49 21 PARENT \N \N 24 20130415100308111-409 3 2013-04-15 10:04:38.213+02 \N +50 24 CHILD \N \N 21 20130415093804724-403 3 2013-04-15 10:04:38.213+02 \N +41 21 OWNED 6 \N \N 20130415091745099-401 2 2013-04-15 09:38:06.047+02 2013-04-15 10:12:40.811+02 +51 21 OWNED \N 345 \N 20130415091923485-402 3 2013-04-15 10:12:40.811+02 \N +52 6 PARENT \N \N 13 20130412153119864-385 3 2013-04-16 14:13:16.684+02 \N +53 13 CHILD \N \N 6 20130412143121081-200 3 2013-04-16 14:13:16.684+02 \N +26 4 PARENT \N \N 13 20130412153119864-385 2 2013-04-12 15:31:24.491+02 2013-04-16 14:13:15.674925+02 +27 13 CHILD \N \N 4 20130412143119901-199 2 2013-04-12 15:31:24.491+02 2013-04-16 14:13:15.674925+02 +64 30 CONTAINER \N \N 29 20130417094934693-427 2 2013-04-17 09:49:42.056+02 \N +65 29 CONTAINED \N \N 30 20130417094937144-429 2 2013-04-17 09:49:42.056+02 \N +66 30 CONTAINER \N \N 28 20130417094936021-428 2 2013-04-17 09:49:41.525+02 \N +67 28 CONTAINED \N \N 30 20130417094937144-429 2 2013-04-17 09:49:41.525+02 \N +61 28 OWNED \N 350 \N 20130417094911967-426 2 2013-04-17 09:49:41.525+02 \N +62 29 OWNED \N 350 \N 20130417094911967-426 2 2013-04-17 09:49:42.056+02 \N +63 30 OWNED \N 350 \N 20130417094911967-426 2 2013-04-17 09:49:42.458+02 \N +68 31 OWNED 2 \N \N 20130412105232616-2 2 2013-04-24 11:17:54.024+02 \N +69 32 OWNED 2 \N \N 20130412105232616-2 2 2013-04-24 11:17:54.278+02 \N +70 17 CONTAINER \N \N 31 20130424111751432-431 2 2013-04-24 11:17:54.489+02 \N +71 31 CONTAINED \N \N 17 20130412153659994-391 2 2013-04-24 11:17:54.489+02 \N +72 17 CONTAINER \N \N 32 20130424111751209-430 2 2013-04-24 11:17:54.49+02 \N +73 32 CONTAINED \N \N 17 20130412153659994-391 2 2013-04-24 11:17:54.49+02 \N +\. + + +-- +-- Data for Name: data_set_type_property_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_type_property_types (id, dsty_id, prty_id, is_mandatory, is_managed_internally, pers_id_registerer, registration_timestamp, ordinal, section, script_id, is_shown_edit, show_raw_value) FROM stdin; +1 2 3 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +2 2 91 f f 1 2013-04-12 10:04:56.658885+02 5 \N \N f f +3 2 59 f f 1 2013-04-12 10:04:56.658885+02 6 \N \N f f +4 2 76 f f 1 2013-04-12 10:04:56.658885+02 7 \N \N f f +5 2 51 f f 1 2013-04-12 10:04:56.658885+02 8 \N \N f f +6 2 86 f f 1 2013-04-12 10:04:56.658885+02 9 \N \N f f +7 2 41 f f 1 2013-04-12 10:04:56.658885+02 10 \N \N f f +8 3 55 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +9 4 59 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +10 4 91 f f 1 2013-04-12 10:04:56.658885+02 5 \N \N f f +11 4 40 f f 1 2013-04-12 10:04:56.658885+02 6 \N \N f f +12 4 42 f f 1 2013-04-12 10:04:56.658885+02 7 \N \N f f +13 4 67 f f 1 2013-04-12 10:04:56.658885+02 8 \N \N f f +14 4 68 f f 1 2013-04-12 10:04:56.658885+02 9 \N \N f f +15 4 93 f f 1 2013-04-12 10:04:56.658885+02 10 \N \N f f +16 4 10 f f 1 2013-04-12 10:04:56.658885+02 11 \N \N f f +17 4 6 f f 1 2013-04-12 10:04:56.658885+02 12 \N \N f f +18 4 53 f f 1 2013-04-12 10:04:56.658885+02 13 \N \N f f +19 4 54 f f 1 2013-04-12 10:04:56.658885+02 14 \N \N f f +20 4 52 f f 1 2013-04-12 10:04:56.658885+02 15 \N \N f f +21 4 82 f f 1 2013-04-12 10:04:56.658885+02 16 \N \N f f +22 6 59 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +23 6 92 f f 1 2013-04-12 10:04:56.658885+02 5 \N \N f f +24 6 63 f f 1 2013-04-12 10:04:56.658885+02 6 \N \N f f +25 6 35 f f 1 2013-04-12 10:04:56.658885+02 7 \N \N f f +26 6 36 f f 1 2013-04-12 10:04:56.658885+02 8 \N \N f f +27 6 65 f f 1 2013-04-12 10:04:56.658885+02 9 \N \N f f +28 6 64 f f 1 2013-04-12 10:04:56.658885+02 10 \N \N f f +29 6 62 f f 1 2013-04-12 10:04:56.658885+02 11 \N \N f f +30 7 8 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +31 9 50 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +32 9 59 f f 1 2013-04-12 10:04:56.658885+02 5 \N \N f f +33 18 95 f f 1 2013-04-12 10:05:46.102969+02 2 \N \N f f +34 25 94 f f 3 2013-04-12 15:36:49.436293+02 1 \N \N t f +35 1 1 f f 3 2013-04-15 10:47:17.538445+02 1 \N \N t f +36 27 95 f f 3 2013-04-16 17:08:31.646227+02 1 \N \N t f +\. + + +-- +-- Data for Name: data_set_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_set_types (id, code, description, dbin_id, modification_timestamp, main_ds_pattern, main_ds_path, deletion_disallow, data_set_kind, validation_script_id) FROM stdin; +1 UNKNOWN Unknown 1 2013-04-12 10:04:52.629266+02 \N \N f PHYSICAL \N +2 ALIGNMENT Aligner ouput, ideally bam/sam 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +3 BASECALL_STATS Base Call Statistics from the Illumina Pipeline (configureBclToFastq.pl) 1 2013-04-12 10:04:56.658885+02 original/.*/.*/Demultiplex_Stats.htm \N f PHYSICAL \N +4 BIGWIGGLE Visualization 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +5 ELAND_ALIGNMENT Illumina Eland Alignment Output 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +6 FASTQ_GZ Gzipped Fastq file produced by Casava 1.8+ 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +7 ILLUMINA_HISEQ_OUTPUT HiSeq2000 Output 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +8 ILLUMINA_MISEQ_OUTPUT MiSeq Output 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +9 MACS_OUTPUT MACS Peak Caller output 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +10 QUALITY_JPGS R generated Quality plots 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +11 QUALITY_PDFS R generated pdfs showing quality data 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +12 QUALITY_SVG R generated Quality plots 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +13 RUNINFO Run statstics: Status.html and Status_Files folder 1 2013-04-12 10:04:56.658885+02 original/.*/Data/Status.htm \N f PHYSICAL \N +14 THUMBNAILS Thumbnails provided by the Illumina software 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +15 TSV Tab separated files 1 2013-04-12 10:04:56.658885+02 \N \N f PHYSICAL \N +16 PROT_RESULT protXML file 1 2013-04-12 10:05:45.583358+02 \N \N f PHYSICAL \N +17 HCS_ANALYSIS_WELL_FEATURES HCS image analysis well feature vectors. 1 2013-04-12 10:05:46.102969+02 \N \N f PHYSICAL \N +18 HCS_IMAGE_OVERVIEW Overview High Content Screening Images. Generated from raw images. 1 2013-04-12 10:05:46.102969+02 \N \N f PHYSICAL \N +19 HCS_IMAGE_RAW Raw High Content Screening Images 1 2013-04-12 10:05:46.102969+02 \N \N f PHYSICAL \N +20 HCS_IMAGE_SEGMENTATION HCS Segmentation Images (overlays). 1 2013-04-12 10:05:46.102969+02 \N \N f PHYSICAL \N +21 HCS_IMAGE_CONTAINER_RAW Container for HCS images of different resolutions (raw, overviews, thumbnails). 1 2013-04-12 10:05:46.102969+02 \N \N f CONTAINER \N +22 HCS_ANALYSIS_FEATURES_LIST The list (or group) of features. The subset of features from feature vectors. 1 2013-04-12 10:05:46.102969+02 \N \N f PHYSICAL \N +23 MICROSCOPY_IMG A data set containing microscopy images 1 2013-04-12 10:51:10.506047+02 \N \N f PHYSICAL \N +24 HCS_IMAGE_CONTAINER_SEGMENTATION \N 1 2013-04-12 15:30:29.99535+02 \N \N f CONTAINER \N +25 HCS_ANALYSIS_CONTAINER_WELL_FEATURES \N 1 2013-04-12 15:35:04.718506+02 \N \N f CONTAINER \N +26 MICROSCOPY_IMG_CONTAINER \N 1 2013-04-12 15:54:10.754523+02 \N \N f CONTAINER \N +27 MICROSCOPY_IMG_OVERVIEW \N 1 2013-04-16 17:07:28.682859+02 \N \N f PHYSICAL \N +\. + + +-- +-- Data for Name: data_store_service_data_set_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_store_service_data_set_types (data_store_service_id, data_set_type_id) FROM stdin; +204 17 +204 25 +206 23 +206 7 +206 19 +206 1 +206 26 +206 6 +206 11 +206 5 +206 21 +206 13 +206 14 +206 20 +206 8 +206 15 +206 2 +206 10 +206 25 +206 16 +206 12 +206 3 +206 18 +206 9 +206 17 +206 22 +206 24 +206 27 +206 4 +208 17 +208 25 +209 23 +209 7 +209 19 +209 1 +209 26 +209 6 +209 11 +209 5 +209 21 +209 13 +209 14 +209 20 +209 8 +209 15 +209 2 +209 10 +209 25 +209 16 +209 12 +209 3 +209 18 +209 9 +209 17 +209 22 +209 24 +209 27 +209 4 +\. + + +-- +-- Data for Name: data_store_services; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_store_services (id, key, label, kind, data_store_id, reporting_plugin_type) FROM stdin; +204 default-plate-image-analysis Image Analysis Results QUERIES 1 TABLE_MODEL +205 test-aggregation-service Test Aggregation Service QUERIES 1 AGGREGATION_TABLE_MODEL +206 path-info-db-consistency-check Path Info DB consistency check PROCESSING 1 \N +207 feature-lists-aggregation-service Features Lists QUERIES 1 AGGREGATION_TABLE_MODEL +208 default-plate-image-analysis Image Analysis Results QUERIES 2 TABLE_MODEL +209 path-info-db-consistency-check Path Info DB consistency check PROCESSING 2 \N +210 test-aggregation-service Test Aggregation Service QUERIES 2 AGGREGATION_TABLE_MODEL +211 feature-lists-aggregation-service Features Lists QUERIES 2 AGGREGATION_TABLE_MODEL +\. + + +-- +-- Data for Name: data_stores; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_stores (id, dbin_id, code, download_url, remote_url, session_token, registration_timestamp, modification_timestamp, is_archiver_configured, data_source_definitions) FROM stdin; +1 1 DSS1 http://localhost:20001 http://127.0.0.1:20001 130424115231248-F963602D3171AA8B1A6C877612750782 2013-04-12 10:06:09.172514+02 2013-04-24 11:52:31.442+02 f code=imaging-db\tdriverClassName=org.postgresql.Driver\thostPart=localhost\tsid=imaging_test_js\tusername=pkupczyk\tpassword=\t\ncode=path-info-db\tdriverClassName=org.postgresql.Driver\tsid=pathinfo_test_js\tusername=pkupczyk\tpassword=\t\ncode=proteomics-db\tdriverClassName=org.postgresql.Driver\thostPart=localhost\tsid=proteomics_productive\tusername=pkupczyk\tpassword=\t\n +2 1 DSS2 http://localhost:20002 http://127.0.0.1:20002 130424115244575-BBE9751899FD0F38528FEC2E2389B435 2013-04-12 16:44:04.986246+02 2013-04-24 11:52:44.671+02 f code=imaging-db\tdriverClassName=org.postgresql.Driver\thostPart=localhost\tsid=imaging_test_js2\tusername=pkupczyk\tpassword=\t\ncode=path-info-db\tdriverClassName=org.postgresql.Driver\tsid=pathinfo_test_js2\tusername=pkupczyk\tpassword=\t\ncode=proteomics-db\tdriverClassName=org.postgresql.Driver\thostPart=localhost\tsid=proteomics_productive\tusername=pkupczyk\tpassword=\t\n +\. + + +-- +-- Data for Name: data_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY data_types (id, code, description) FROM stdin; +1 VARCHAR Short text +2 MULTILINE_VARCHAR Long text +3 INTEGER Integer number +4 REAL Real number, i.e. an inexact, variable-precision numeric type +5 BOOLEAN True or False +6 TIMESTAMP Both date and time. Format: yyyy-mm-dd hh:mm:ss +7 CONTROLLEDVOCABULARY Controlled Vocabulary +8 MATERIAL Reference to a material +9 HYPERLINK Address of a web page +10 XML XML document +\. + + +-- +-- Data for Name: database_instances; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY database_instances (id, code, uuid, is_original_source, registration_timestamp) FROM stdin; +1 DEFAULT 1FD3FF61-1576-4908-AE3D-296E60B4CE06 t 2013-04-12 10:04:52.629266+02 +\. + + +-- +-- Data for Name: database_version_logs; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY database_version_logs (db_version, module_name, run_status, run_status_timestamp, module_code, run_exception) FROM stdin; +133 ./sql/postgresql/133/domains-133.sql SUCCESS 2013-04-12 10:04:51.327 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\N +133 ./sql/generic/133/schema-133.sql SUCCESS 2013-04-12 10:04:52.354 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\N +133 ./sql/postgresql/133/function-133.sql SUCCESS 2013-04-12 10:04:52.55 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\N +133 ./sql/postgresql/133/grants-133.sql SUCCESS 2013-04-12 10:04:52.595 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\N +133 ./sql/generic/133/data-133.sql SUCCESS 2013-04-12 10:04:52.813 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\N +\. + + +-- +-- Data for Name: deletions; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY deletions (id, pers_id_registerer, registration_timestamp, reason) FROM stdin; +\. + + +-- +-- Data for Name: entity_operations_log; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY entity_operations_log (id, registration_id) FROM stdin; +1 2 +2 3 +3 4 +4 6 +5 9 +6 12 +7 13 +8 14 +9 15 +10 16 +11 19 +12 20 +13 21 +\. + + +-- +-- Data for Name: events; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY events (id, event_type, description, reason, pers_id_registerer, registration_timestamp, entity_type, identifiers) FROM stdin; +1 DELETION /DSS1/1/1FD3FF61-1576-4908-AE3D-296E60B4CE06/42/c3/ec/20130412145123859-201 - 3 2013-04-12 14:56:56.588918+02 DATASET 20130412145123859-201 +2 DELETION 20130412100452629-1 - 3 2013-04-12 14:57:19.168743+02 SAMPLE 20130412100452629-1 +3 DELETION 20130412100452629-1 - 3 2013-04-12 14:57:19.168743+02 EXPERIMENT 20130412100452629-1 +4 DELETION /DEFAULT/DEFAULT - 3 2013-04-12 14:57:41.210985+02 PROJECT /DEFAULT/DEFAULT +5 DELETION DEFAULT - 3 2013-04-12 14:57:45.665781+02 SPACE DEFAULT +6 DELETION /TEST/TEST-PROJECT - 3 2013-04-12 15:00:02.731332+02 PROJECT /TEST/TEST-PROJECT +7 DELETION 20130412154209329-392 - 3 2013-04-12 15:46:34.880467+02 EXPERIMENT 20130412154209329-392 +8 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 09:11:40.489979+02 METAPROJECT JS_TEST_METAPROJECT +9 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 09:12:13.95139+02 METAPROJECT JS_TEST_METAPROJECT +10 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 09:12:17.323181+02 METAPROJECT JS_TEST_METAPROJECT +11 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 09:12:17.979612+02 METAPROJECT JS_TEST_METAPROJECT +12 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 10:52:22.521778+02 METAPROJECT JS_TEST_METAPROJECT +13 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 10:52:53.643151+02 METAPROJECT JS_TEST_METAPROJECT +14 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 10:53:28.165607+02 METAPROJECT JS_TEST_METAPROJECT +15 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 10:53:31.576793+02 METAPROJECT JS_TEST_METAPROJECT +16 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 10:53:32.208505+02 METAPROJECT JS_TEST_METAPROJECT +17 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:00:37.107579+02 METAPROJECT JS_TEST_METAPROJECT +18 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:01:08.346537+02 METAPROJECT JS_TEST_METAPROJECT +19 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:01:43.008256+02 METAPROJECT JS_TEST_METAPROJECT +20 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:01:46.294879+02 METAPROJECT JS_TEST_METAPROJECT +21 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:01:46.919683+02 METAPROJECT JS_TEST_METAPROJECT +22 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:05:24.097187+02 METAPROJECT JS_TEST_METAPROJECT +23 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:05:25.368672+02 METAPROJECT JS_TEST_METAPROJECT +24 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:05:55.737595+02 METAPROJECT JS_TEST_METAPROJECT +25 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:05:56.948161+02 METAPROJECT JS_TEST_METAPROJECT +26 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:06:29.764112+02 METAPROJECT JS_TEST_METAPROJECT +27 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:06:30.969725+02 METAPROJECT JS_TEST_METAPROJECT +28 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:06:33.09923+02 METAPROJECT JS_TEST_METAPROJECT +29 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:06:33.747895+02 METAPROJECT JS_TEST_METAPROJECT +30 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:06:34.615953+02 METAPROJECT JS_TEST_METAPROJECT +31 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:06:35.276179+02 METAPROJECT JS_TEST_METAPROJECT +32 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:07:20.230066+02 METAPROJECT JS_TEST_METAPROJECT +33 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 11:07:21.048289+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +34 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:07:21.706128+02 METAPROJECT JS_TEST_METAPROJECT +35 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:08:52.147579+02 METAPROJECT JS_TEST_METAPROJECT +36 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 11:08:52.880268+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +37 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:08:53.539637+02 METAPROJECT JS_TEST_METAPROJECT +38 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:08:54.285865+02 METAPROJECT JS_TEST_METAPROJECT +39 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 11:08:57.615134+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +40 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:08:58.27952+02 METAPROJECT JS_TEST_METAPROJECT +41 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:09:01.649456+02 METAPROJECT JS_TEST_METAPROJECT +42 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:09:04.976816+02 METAPROJECT JS_TEST_METAPROJECT +43 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:09:05.660435+02 METAPROJECT JS_TEST_METAPROJECT +44 DELETION project//TEST/TEST-PROJECT/notEmptyFile - 3 2013-04-15 11:14:53.839274+02 ATTACHMENT project//TEST/TEST-PROJECT/notEmptyFile +45 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:29.950257+02 METAPROJECT JS_TEST_METAPROJECT +46 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 11:23:30.669483+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +47 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:31.330414+02 METAPROJECT JS_TEST_METAPROJECT +48 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:32.08754+02 METAPROJECT JS_TEST_METAPROJECT +49 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 11:23:35.507751+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +50 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:36.168135+02 METAPROJECT JS_TEST_METAPROJECT +51 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:39.495861+02 METAPROJECT JS_TEST_METAPROJECT +52 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:42.820016+02 METAPROJECT JS_TEST_METAPROJECT +53 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 11:23:43.453608+02 METAPROJECT JS_TEST_METAPROJECT +54 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:36.062875+02 METAPROJECT JS_TEST_METAPROJECT +55 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 14:01:36.969754+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +56 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:37.651158+02 METAPROJECT JS_TEST_METAPROJECT +57 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:38.52136+02 METAPROJECT JS_TEST_METAPROJECT +58 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 14:01:41.918828+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +59 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:42.594687+02 METAPROJECT JS_TEST_METAPROJECT +60 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:46.058868+02 METAPROJECT JS_TEST_METAPROJECT +61 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:49.457547+02 METAPROJECT JS_TEST_METAPROJECT +62 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:01:50.17106+02 METAPROJECT JS_TEST_METAPROJECT +63 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:42.482011+02 METAPROJECT JS_TEST_METAPROJECT +64 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 14:03:43.199035+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +65 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:43.894216+02 METAPROJECT JS_TEST_METAPROJECT +66 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:44.709534+02 METAPROJECT JS_TEST_METAPROJECT +67 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 14:03:48.134299+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +68 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:48.843566+02 METAPROJECT JS_TEST_METAPROJECT +72 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:07.261219+02 METAPROJECT JS_TEST_METAPROJECT +73 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 15:01:08.080285+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +74 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:08.783028+02 METAPROJECT JS_TEST_METAPROJECT +75 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:09.667774+02 METAPROJECT JS_TEST_METAPROJECT +76 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 15:01:13.232246+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +77 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:13.93689+02 METAPROJECT JS_TEST_METAPROJECT +69 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:52.387878+02 METAPROJECT JS_TEST_METAPROJECT +70 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:55.786006+02 METAPROJECT JS_TEST_METAPROJECT +71 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 14:03:56.45293+02 METAPROJECT JS_TEST_METAPROJECT +78 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:17.469151+02 METAPROJECT JS_TEST_METAPROJECT +79 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:18.309256+02 METAPROJECT JS_TEST_METAPROJECT +80 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 15:01:19.126753+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +81 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:19.841025+02 METAPROJECT JS_TEST_METAPROJECT +82 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:20.672579+02 METAPROJECT JS_TEST_METAPROJECT +83 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 15:01:24.091817+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +84 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:24.758187+02 METAPROJECT JS_TEST_METAPROJECT +86 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:28.228924+02 METAPROJECT JS_TEST_METAPROJECT +87 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:31.651773+02 METAPROJECT JS_TEST_METAPROJECT +88 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:32.307097+02 METAPROJECT JS_TEST_METAPROJECT +90 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:01:35.077637+02 METAPROJECT JS_TEST_METAPROJECT +91 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:02:07.652688+02 METAPROJECT JS_TEST_METAPROJECT +92 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:10.304838+02 METAPROJECT JS_TEST_METAPROJECT +93 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 15:28:11.019333+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +94 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:11.775617+02 METAPROJECT JS_TEST_METAPROJECT +95 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:12.591226+02 METAPROJECT JS_TEST_METAPROJECT +96 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 15:28:16.234964+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +97 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:16.9276+02 METAPROJECT JS_TEST_METAPROJECT +98 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:20.356544+02 METAPROJECT JS_TEST_METAPROJECT +99 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:23.816947+02 METAPROJECT JS_TEST_METAPROJECT +100 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 15:28:24.476733+02 METAPROJECT JS_TEST_METAPROJECT +101 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:30:52.325838+02 METAPROJECT JS_TEST_METAPROJECT +102 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 16:30:53.043635+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +103 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:30:53.727792+02 METAPROJECT JS_TEST_METAPROJECT +104 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:30:54.545939+02 METAPROJECT JS_TEST_METAPROJECT +105 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 16:30:57.978767+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +106 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:30:58.668999+02 METAPROJECT JS_TEST_METAPROJECT +107 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:31:02.097585+02 METAPROJECT JS_TEST_METAPROJECT +108 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:31:05.522883+02 METAPROJECT JS_TEST_METAPROJECT +109 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:31:06.176458+02 METAPROJECT JS_TEST_METAPROJECT +110 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 16:45:18.729637+02 METAPROJECT JS_TEST_METAPROJECT +111 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 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JS_TEST_METAPROJECT_POWER_USER +121 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 17:03:04.928927+02 METAPROJECT JS_TEST_METAPROJECT +122 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 17:03:05.732053+02 METAPROJECT JS_TEST_METAPROJECT +123 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-15 17:03:09.059144+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +124 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 17:03:09.718816+02 METAPROJECT JS_TEST_METAPROJECT +125 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 17:03:13.083453+02 METAPROJECT JS_TEST_METAPROJECT +126 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 17:03:16.813254+02 METAPROJECT JS_TEST_METAPROJECT +127 DELETION JS_TEST_METAPROJECT \N 4 2013-04-15 17:03:17.441928+02 METAPROJECT JS_TEST_METAPROJECT +128 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:20.030405+02 METAPROJECT JS_TEST_METAPROJECT +129 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 09:17:20.874729+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +130 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:21.546093+02 METAPROJECT JS_TEST_METAPROJECT +131 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:22.320135+02 METAPROJECT JS_TEST_METAPROJECT +132 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 09:17:25.996789+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +133 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:26.665196+02 METAPROJECT JS_TEST_METAPROJECT +134 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:30.023469+02 METAPROJECT JS_TEST_METAPROJECT +135 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:33.34669+02 METAPROJECT JS_TEST_METAPROJECT +136 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 09:17:34.000474+02 METAPROJECT JS_TEST_METAPROJECT +137 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:20.176061+02 METAPROJECT JS_TEST_METAPROJECT +138 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 11:56:21.282954+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +139 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:21.966668+02 METAPROJECT JS_TEST_METAPROJECT +140 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:22.82603+02 METAPROJECT JS_TEST_METAPROJECT +141 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 11:56:26.311385+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +142 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:27.010758+02 METAPROJECT JS_TEST_METAPROJECT +143 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:30.554268+02 METAPROJECT JS_TEST_METAPROJECT +144 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:34.073463+02 METAPROJECT JS_TEST_METAPROJECT +145 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 11:56:34.719557+02 METAPROJECT JS_TEST_METAPROJECT +146 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:29.13247+02 METAPROJECT JS_TEST_METAPROJECT +147 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 12:03:29.955832+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +148 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:30.682213+02 METAPROJECT JS_TEST_METAPROJECT +149 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:31.47121+02 METAPROJECT JS_TEST_METAPROJECT +150 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 12:03:34.797044+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +151 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:35.467711+02 METAPROJECT JS_TEST_METAPROJECT +152 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:38.82777+02 METAPROJECT JS_TEST_METAPROJECT +153 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:42.15037+02 METAPROJECT JS_TEST_METAPROJECT +154 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 12:03:42.82984+02 METAPROJECT JS_TEST_METAPROJECT +155 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:40.818358+02 METAPROJECT JS_TEST_METAPROJECT +156 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 14:38:41.807898+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +157 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:42.526315+02 METAPROJECT JS_TEST_METAPROJECT +158 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:43.344203+02 METAPROJECT JS_TEST_METAPROJECT +159 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 14:38:46.871476+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +160 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:47.604648+02 METAPROJECT JS_TEST_METAPROJECT +161 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:51.128335+02 METAPROJECT JS_TEST_METAPROJECT +162 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:54.68297+02 METAPROJECT JS_TEST_METAPROJECT +163 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:38:55.373892+02 METAPROJECT JS_TEST_METAPROJECT +164 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:42:53.727328+02 METAPROJECT JS_TEST_METAPROJECT +165 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 14:42:54.547141+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +166 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:42:55.243104+02 METAPROJECT JS_TEST_METAPROJECT +167 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:42:56.061261+02 METAPROJECT JS_TEST_METAPROJECT +168 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-16 14:42:59.489454+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +169 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:43:00.162954+02 METAPROJECT JS_TEST_METAPROJECT +170 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:43:03.547298+02 METAPROJECT JS_TEST_METAPROJECT +171 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:43:07.139795+02 METAPROJECT JS_TEST_METAPROJECT +172 DELETION JS_TEST_METAPROJECT \N 4 2013-04-16 14:43:07.799086+02 METAPROJECT JS_TEST_METAPROJECT +173 DELETION /DSS1/1/1FD3FF61-1576-4908-AE3D-296E60B4CE06/ef/5d/1e/20130412155434687-399, /DSS1// - 3 2013-04-16 17:01:38.718536+02 DATASET 20130412155434687-399, 20130412155435773-400 +174 DELETION 20130412154242352-393 - 3 2013-04-16 17:01:38.718536+02 SAMPLE 20130412154242352-393 +175 DELETION /DSS2/1/1FD3FF61-1576-4908-AE3D-296E60B4CE06/d4/67/f7/20130416170852918-421, /DSS2/1/1FD3FF61-1576-4908-AE3D-296E60B4CE06/ec/c1/59/20130416170850880-420, /DSS2// - 3 2013-04-16 17:22:27.874799+02 DATASET 20130416170852918-421, 20130416170850880-420, 20130416170854116-422 +176 DELETION 20130416170612564-413 - 3 2013-04-16 17:22:27.874799+02 SAMPLE 20130416170612564-413 +177 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:12.182525+02 METAPROJECT JS_TEST_METAPROJECT +178 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-17 10:06:13.08814+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +179 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:13.76144+02 METAPROJECT JS_TEST_METAPROJECT +180 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:14.508526+02 METAPROJECT JS_TEST_METAPROJECT +181 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-17 10:06:17.945549+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +182 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:18.626167+02 METAPROJECT JS_TEST_METAPROJECT +183 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:21.984739+02 METAPROJECT JS_TEST_METAPROJECT +184 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:25.306462+02 METAPROJECT JS_TEST_METAPROJECT +185 DELETION JS_TEST_METAPROJECT \N 4 2013-04-17 10:06:25.943751+02 METAPROJECT JS_TEST_METAPROJECT +186 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:02.587616+02 METAPROJECT JS_TEST_METAPROJECT +187 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-24 14:50:02.892957+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +188 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:03.020166+02 METAPROJECT JS_TEST_METAPROJECT +189 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:03.207607+02 METAPROJECT JS_TEST_METAPROJECT +190 DELETION JS_TEST_METAPROJECT_POWER_USER \N 7 2013-04-24 14:50:03.627029+02 METAPROJECT JS_TEST_METAPROJECT_POWER_USER +191 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:03.753019+02 METAPROJECT JS_TEST_METAPROJECT +192 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:04.16311+02 METAPROJECT JS_TEST_METAPROJECT +193 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:04.621978+02 METAPROJECT JS_TEST_METAPROJECT +194 DELETION JS_TEST_METAPROJECT \N 4 2013-04-24 14:50:04.723926+02 METAPROJECT JS_TEST_METAPROJECT +\. + + +-- +-- Data for Name: experiment_properties; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiment_properties (id, expe_id, etpt_id, value, cvte_id, mate_prop_id, pers_id_registerer, registration_timestamp, pers_id_author, modification_timestamp) FROM stdin; +\. + + +-- +-- Data for Name: experiment_properties_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiment_properties_history (id, expe_id, etpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) FROM stdin; +\. + + +-- +-- Data for Name: experiment_relationships_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiment_relationships_history (id, main_expe_id, relation_type, samp_id, data_id, entity_perm_id, pers_id_author, valid_from_timestamp, valid_until_timestamp, proj_id) FROM stdin; +3 2 OWNED \N \N SCREENING-EXAMPLES 3 2013-04-12 10:52:32.616+02 \N 2 +4 2 OWNER 2 \N 20130412140147735-20 3 2013-04-12 14:01:47.477+02 \N \N +5 2 OWNER 3 \N 20130412140147736-21 3 2013-04-12 14:01:47.735+02 \N \N +6 2 OWNER 4 \N 20130412140151638-22 3 2013-04-12 14:01:51.636+02 \N \N +7 2 OWNER 5 \N 20130412140151651-23 3 2013-04-12 14:01:51.651+02 \N \N +8 2 OWNER 6 \N 20130412140151661-24 3 2013-04-12 14:01:51.661+02 \N \N +9 2 OWNER 7 \N 20130412140151672-25 3 2013-04-12 14:01:51.672+02 \N \N +10 2 OWNER 8 \N 20130412140151683-26 3 2013-04-12 14:01:51.682+02 \N \N +11 2 OWNER 9 \N 20130412140151750-27 3 2013-04-12 14:01:51.749+02 \N \N +12 2 OWNER 10 \N 20130412140151792-28 3 2013-04-12 14:01:51.791+02 \N \N +13 2 OWNER 11 \N 20130412140151848-29 3 2013-04-12 14:01:51.848+02 \N \N +14 2 OWNER 12 \N 20130412140151886-30 3 2013-04-12 14:01:51.885+02 \N \N +15 2 OWNER 13 \N 20130412140151918-31 3 2013-04-12 14:01:51.917+02 \N \N +16 2 OWNER 14 \N 20130412140151949-32 3 2013-04-12 14:01:51.948+02 \N \N +17 2 OWNER 15 \N 20130412140151970-33 3 2013-04-12 14:01:51.969+02 \N \N +18 2 OWNER 16 \N 20130412140151987-34 3 2013-04-12 14:01:51.986+02 \N \N +19 2 OWNER 17 \N 20130412140151999-35 3 2013-04-12 14:01:51.998+02 \N \N +20 2 OWNER 18 \N 20130412140152009-36 3 2013-04-12 14:01:52.009+02 \N \N +21 2 OWNER 19 \N 20130412140152021-37 3 2013-04-12 14:01:52.02+02 \N \N +22 2 OWNER 20 \N 20130412140152031-38 3 2013-04-12 14:01:52.03+02 \N \N +23 2 OWNER 21 \N 20130412140152041-39 3 2013-04-12 14:01:52.04+02 \N \N +24 2 OWNER 22 \N 20130412140152052-40 3 2013-04-12 14:01:52.051+02 \N \N +25 2 OWNER 23 \N 20130412140152084-41 3 2013-04-12 14:01:52.083+02 \N \N +26 2 OWNER 24 \N 20130412140152095-42 3 2013-04-12 14:01:52.094+02 \N \N +27 2 OWNER 25 \N 20130412140152106-43 3 2013-04-12 14:01:52.106+02 \N \N +28 2 OWNER 26 \N 20130412140152117-44 3 2013-04-12 14:01:52.116+02 \N \N +29 2 OWNER 27 \N 20130412140152127-45 3 2013-04-12 14:01:52.127+02 \N \N +30 2 OWNER 28 \N 20130412140152138-46 3 2013-04-12 14:01:52.137+02 \N \N +31 2 OWNER 29 \N 20130412140152148-47 3 2013-04-12 14:01:52.147+02 \N \N +32 2 OWNER 30 \N 20130412140152159-48 3 2013-04-12 14:01:52.158+02 \N \N +33 2 OWNER 31 \N 20130412140152169-49 3 2013-04-12 14:01:52.169+02 \N \N +34 2 OWNER 32 \N 20130412140152180-50 3 2013-04-12 14:01:52.179+02 \N \N +35 2 OWNER 33 \N 20130412140152190-51 3 2013-04-12 14:01:52.19+02 \N \N +36 2 OWNER 34 \N 20130412140152224-52 3 2013-04-12 14:01:52.224+02 \N \N +37 2 OWNER 35 \N 20130412140152236-53 3 2013-04-12 14:01:52.235+02 \N \N +38 2 OWNER 36 \N 20130412140152248-54 3 2013-04-12 14:01:52.247+02 \N \N +39 2 OWNER 37 \N 20130412140152259-55 3 2013-04-12 14:01:52.258+02 \N \N +40 2 OWNER 38 \N 20130412140152270-56 3 2013-04-12 14:01:52.269+02 \N \N +41 2 OWNER 39 \N 20130412140152280-57 3 2013-04-12 14:01:52.28+02 \N \N +42 2 OWNER 40 \N 20130412140152291-58 3 2013-04-12 14:01:52.291+02 \N \N +43 2 OWNER 41 \N 20130412140152303-59 3 2013-04-12 14:01:52.302+02 \N \N +44 2 OWNER 42 \N 20130412140152313-60 3 2013-04-12 14:01:52.313+02 \N \N +45 2 OWNER 43 \N 20130412140152324-61 3 2013-04-12 14:01:52.324+02 \N \N +46 2 OWNER 44 \N 20130412140152334-62 3 2013-04-12 14:01:52.334+02 \N \N +47 2 OWNER 45 \N 20130412140152345-63 3 2013-04-12 14:01:52.344+02 \N \N +48 2 OWNER 46 \N 20130412140152355-64 3 2013-04-12 14:01:52.355+02 \N \N +49 2 OWNER 47 \N 20130412140152365-65 3 2013-04-12 14:01:52.365+02 \N \N +50 2 OWNER 48 \N 20130412140152375-66 3 2013-04-12 14:01:52.375+02 \N \N +51 2 OWNER 49 \N 20130412140152387-67 3 2013-04-12 14:01:52.386+02 \N \N +52 2 OWNER 50 \N 20130412140152420-68 3 2013-04-12 14:01:52.419+02 \N \N +53 2 OWNER 51 \N 20130412140152431-69 3 2013-04-12 14:01:52.431+02 \N \N +54 2 OWNER 52 \N 20130412140152442-70 3 2013-04-12 14:01:52.441+02 \N \N +55 2 OWNER 53 \N 20130412140152470-71 3 2013-04-12 14:01:52.47+02 \N \N +56 2 OWNER 54 \N 20130412140152480-72 3 2013-04-12 14:01:52.48+02 \N \N +57 2 OWNER 55 \N 20130412140152490-73 3 2013-04-12 14:01:52.49+02 \N \N +58 2 OWNER 56 \N 20130412140152501-74 3 2013-04-12 14:01:52.5+02 \N \N +59 2 OWNER 57 \N 20130412140152527-75 3 2013-04-12 14:01:52.527+02 \N \N +60 2 OWNER 58 \N 20130412140152537-76 3 2013-04-12 14:01:52.537+02 \N \N +61 2 OWNER 59 \N 20130412140152548-77 3 2013-04-12 14:01:52.547+02 \N \N +62 2 OWNER 60 \N 20130412140152559-78 3 2013-04-12 14:01:52.558+02 \N \N +63 2 OWNER 61 \N 20130412140152595-79 3 2013-04-12 14:01:52.594+02 \N \N +64 2 OWNER 62 \N 20130412140152606-80 3 2013-04-12 14:01:52.606+02 \N \N +65 2 OWNER 63 \N 20130412140152617-81 3 2013-04-12 14:01:52.617+02 \N \N +66 2 OWNER 64 \N 20130412140152634-82 3 2013-04-12 14:01:52.633+02 \N \N +67 2 OWNER 65 \N 20130412140152645-83 3 2013-04-12 14:01:52.644+02 \N \N +68 2 OWNER 66 \N 20130412140152655-84 3 2013-04-12 14:01:52.655+02 \N \N +69 2 OWNER 67 \N 20130412140152665-85 3 2013-04-12 14:01:52.665+02 \N \N +70 2 OWNER 68 \N 20130412140152675-86 3 2013-04-12 14:01:52.675+02 \N \N +71 2 OWNER 69 \N 20130412140152685-87 3 2013-04-12 14:01:52.685+02 \N \N +72 2 OWNER 70 \N 20130412140152695-88 3 2013-04-12 14:01:52.695+02 \N \N +73 2 OWNER 71 \N 20130412140152706-89 3 2013-04-12 14:01:52.705+02 \N \N +74 2 OWNER 72 \N 20130412140152716-90 3 2013-04-12 14:01:52.716+02 \N \N +75 2 OWNER 73 \N 20130412140152726-91 3 2013-04-12 14:01:52.726+02 \N \N +76 2 OWNER 74 \N 20130412140152738-92 3 2013-04-12 14:01:52.737+02 \N \N +77 2 OWNER 75 \N 20130412140152771-93 3 2013-04-12 14:01:52.771+02 \N \N +78 2 OWNER 76 \N 20130412140152783-94 3 2013-04-12 14:01:52.782+02 \N \N +79 2 OWNER 77 \N 20130412140152794-95 3 2013-04-12 14:01:52.793+02 \N \N +80 2 OWNER 78 \N 20130412140152804-96 3 2013-04-12 14:01:52.803+02 \N \N +81 2 OWNER 79 \N 20130412140152814-97 3 2013-04-12 14:01:52.814+02 \N \N +82 2 OWNER 80 \N 20130412140152825-98 3 2013-04-12 14:01:52.824+02 \N \N +83 2 OWNER 81 \N 20130412140152835-99 3 2013-04-12 14:01:52.834+02 \N \N +84 2 OWNER 82 \N 20130412140152846-100 3 2013-04-12 14:01:52.845+02 \N \N +85 2 OWNER 83 \N 20130412140152921-101 3 2013-04-12 14:01:52.921+02 \N \N +86 2 OWNER 84 \N 20130412140152952-102 3 2013-04-12 14:01:52.951+02 \N \N +87 2 OWNER 85 \N 20130412140152963-103 3 2013-04-12 14:01:52.962+02 \N \N +88 2 OWNER 86 \N 20130412140152976-104 3 2013-04-12 14:01:52.975+02 \N \N +89 2 OWNER 87 \N 20130412140152987-105 3 2013-04-12 14:01:52.986+02 \N \N +90 2 OWNER 88 \N 20130412140152997-106 3 2013-04-12 14:01:52.997+02 \N \N +91 2 OWNER 89 \N 20130412140153007-107 3 2013-04-12 14:01:53.007+02 \N \N +92 2 OWNER 90 \N 20130412140153018-108 3 2013-04-12 14:01:53.017+02 \N \N +93 2 OWNER 91 \N 20130412140153040-109 3 2013-04-12 14:01:53.039+02 \N \N +94 2 OWNER 92 \N 20130412140153050-110 3 2013-04-12 14:01:53.05+02 \N \N +95 2 OWNER 93 \N 20130412140153061-111 3 2013-04-12 14:01:53.06+02 \N \N +96 2 OWNER 94 \N 20130412140153071-112 3 2013-04-12 14:01:53.07+02 \N \N +97 2 OWNER 95 \N 20130412140153081-113 3 2013-04-12 14:01:53.081+02 \N \N +98 2 OWNER 96 \N 20130412140153091-114 3 2013-04-12 14:01:53.091+02 \N \N +99 2 OWNER 97 \N 20130412140153101-115 3 2013-04-12 14:01:53.101+02 \N \N +100 2 OWNER 98 \N 20130412140153111-116 3 2013-04-12 14:01:53.111+02 \N \N +101 2 OWNER 99 \N 20130412140153130-117 3 2013-04-12 14:01:53.129+02 \N \N +102 2 OWNER 100 \N 20130412140153142-118 3 2013-04-12 14:01:53.142+02 \N \N +103 2 OWNER 101 \N 20130412140153153-119 3 2013-04-12 14:01:53.152+02 \N \N +104 2 OWNER 102 \N 20130412140153169-120 3 2013-04-12 14:01:53.169+02 \N \N +105 2 OWNER 103 \N 20130412140153182-121 3 2013-04-12 14:01:53.181+02 \N \N +106 2 OWNER 104 \N 20130412140153192-122 3 2013-04-12 14:01:53.192+02 \N \N +107 2 OWNER 105 \N 20130412140153202-123 3 2013-04-12 14:01:53.202+02 \N \N +108 2 OWNER 106 \N 20130412140153212-124 3 2013-04-12 14:01:53.212+02 \N \N +109 2 OWNER 107 \N 20130412140153222-125 3 2013-04-12 14:01:53.222+02 \N \N +110 2 OWNER 108 \N 20130412140153232-126 3 2013-04-12 14:01:53.232+02 \N \N +111 2 OWNER 109 \N 20130412140153243-127 3 2013-04-12 14:01:53.242+02 \N \N +112 2 OWNER 110 \N 20130412140153253-128 3 2013-04-12 14:01:53.253+02 \N \N +113 2 OWNER 111 \N 20130412140153263-129 3 2013-04-12 14:01:53.263+02 \N \N +114 2 OWNER 112 \N 20130412140153275-130 3 2013-04-12 14:01:53.275+02 \N \N +115 2 OWNER 113 \N 20130412140153296-131 3 2013-04-12 14:01:53.296+02 \N \N +116 2 OWNER 114 \N 20130412140153308-132 3 2013-04-12 14:01:53.307+02 \N \N +117 2 OWNER 115 \N 20130412140153319-133 3 2013-04-12 14:01:53.319+02 \N \N +118 2 OWNER 116 \N 20130412140153329-134 3 2013-04-12 14:01:53.329+02 \N \N +119 2 OWNER 117 \N 20130412140153360-135 3 2013-04-12 14:01:53.36+02 \N \N +120 2 OWNER 118 \N 20130412140153371-136 3 2013-04-12 14:01:53.371+02 \N \N +121 2 OWNER 119 \N 20130412140153382-137 3 2013-04-12 14:01:53.382+02 \N \N +122 2 OWNER 120 \N 20130412140153394-138 3 2013-04-12 14:01:53.393+02 \N \N +123 2 OWNER 121 \N 20130412140153405-139 3 2013-04-12 14:01:53.404+02 \N \N +124 2 OWNER 122 \N 20130412140153450-140 3 2013-04-12 14:01:53.449+02 \N \N +125 2 OWNER 123 \N 20130412140153462-141 3 2013-04-12 14:01:53.462+02 \N \N +126 2 OWNER 124 \N 20130412140153472-142 3 2013-04-12 14:01:53.472+02 \N \N +127 2 OWNER 125 \N 20130412140153483-143 3 2013-04-12 14:01:53.482+02 \N \N +128 2 OWNER 126 \N 20130412140153493-144 3 2013-04-12 14:01:53.492+02 \N \N +129 2 OWNER 127 \N 20130412140153518-145 3 2013-04-12 14:01:53.517+02 \N \N +130 2 OWNER 128 \N 20130412140153544-146 3 2013-04-12 14:01:53.544+02 \N \N +131 2 OWNER 129 \N 20130412140153556-147 3 2013-04-12 14:01:53.555+02 \N \N +132 2 OWNER 130 \N 20130412140153567-148 3 2013-04-12 14:01:53.566+02 \N \N +133 2 OWNER 131 \N 20130412140153577-149 3 2013-04-12 14:01:53.577+02 \N \N +134 2 OWNER 132 \N 20130412140153588-150 3 2013-04-12 14:01:53.587+02 \N \N +135 2 OWNER 133 \N 20130412140153600-151 3 2013-04-12 14:01:53.599+02 \N \N +136 2 OWNER 134 \N 20130412140153640-152 3 2013-04-12 14:01:53.64+02 \N \N +137 2 OWNER 135 \N 20130412140153652-153 3 2013-04-12 14:01:53.651+02 \N \N +138 2 OWNER 136 \N 20130412140153664-154 3 2013-04-12 14:01:53.664+02 \N \N +139 2 OWNER 137 \N 20130412140153695-155 3 2013-04-12 14:01:53.695+02 \N \N +140 2 OWNER 138 \N 20130412140153716-156 3 2013-04-12 14:01:53.715+02 \N \N +141 2 OWNER 139 \N 20130412140153732-157 3 2013-04-12 14:01:53.731+02 \N \N +142 2 OWNER 140 \N 20130412140153745-158 3 2013-04-12 14:01:53.744+02 \N \N +143 2 OWNER 141 \N 20130412140153762-159 3 2013-04-12 14:01:53.762+02 \N \N +144 2 OWNER 142 \N 20130412140153779-160 3 2013-04-12 14:01:53.779+02 \N \N +145 2 OWNER 143 \N 20130412140153789-161 3 2013-04-12 14:01:53.789+02 \N \N +146 2 OWNER 144 \N 20130412140153799-162 3 2013-04-12 14:01:53.799+02 \N \N +147 2 OWNER 145 \N 20130412140153809-163 3 2013-04-12 14:01:53.809+02 \N \N +148 2 OWNER 146 \N 20130412140153821-164 3 2013-04-12 14:01:53.82+02 \N \N +149 2 OWNER 147 \N 20130412140153834-165 3 2013-04-12 14:01:53.833+02 \N \N +150 2 OWNER 148 \N 20130412140153847-166 3 2013-04-12 14:01:53.846+02 \N \N +151 2 OWNER 149 \N 20130412140153858-167 3 2013-04-12 14:01:53.858+02 \N \N +152 2 OWNER 150 \N 20130412140153869-168 3 2013-04-12 14:01:53.869+02 \N \N +153 2 OWNER 151 \N 20130412140153881-169 3 2013-04-12 14:01:53.88+02 \N \N +154 2 OWNER 152 \N 20130412140153911-170 3 2013-04-12 14:01:53.91+02 \N \N +155 2 OWNER 153 \N 20130412140153925-171 3 2013-04-12 14:01:53.925+02 \N \N +156 2 OWNER 154 \N 20130412140153936-172 3 2013-04-12 14:01:53.935+02 \N \N +157 2 OWNER 155 \N 20130412140153947-173 3 2013-04-12 14:01:53.947+02 \N \N +158 2 OWNER 156 \N 20130412140153997-174 3 2013-04-12 14:01:53.997+02 \N \N +159 2 OWNER 157 \N 20130412140154008-175 3 2013-04-12 14:01:54.007+02 \N \N +160 2 OWNER 158 \N 20130412140154041-176 3 2013-04-12 14:01:54.041+02 \N \N +161 2 OWNER 159 \N 20130412140154054-177 3 2013-04-12 14:01:54.053+02 \N \N +162 2 OWNER 160 \N 20130412140154072-178 3 2013-04-12 14:01:54.072+02 \N \N +163 2 OWNER 161 \N 20130412140154083-179 3 2013-04-12 14:01:54.082+02 \N \N +164 2 OWNER 162 \N 20130412140154093-180 3 2013-04-12 14:01:54.092+02 \N \N +165 2 OWNER 163 \N 20130412140154103-181 3 2013-04-12 14:01:54.102+02 \N \N +166 2 OWNER 164 \N 20130412140154112-182 3 2013-04-12 14:01:54.112+02 \N \N +167 2 OWNER 165 \N 20130412140154122-183 3 2013-04-12 14:01:54.122+02 \N \N +168 2 OWNER 166 \N 20130412140154132-184 3 2013-04-12 14:01:54.132+02 \N \N +169 2 OWNER 167 \N 20130412140154143-185 3 2013-04-12 14:01:54.142+02 \N \N +170 2 OWNER 168 \N 20130412140154153-186 3 2013-04-12 14:01:54.152+02 \N \N +171 2 OWNER 169 \N 20130412140154163-187 3 2013-04-12 14:01:54.163+02 \N \N +172 2 OWNER 170 \N 20130412140154174-188 3 2013-04-12 14:01:54.173+02 \N \N +173 2 OWNER 171 \N 20130412140154184-189 3 2013-04-12 14:01:54.183+02 \N \N +174 2 OWNER 172 \N 20130412140154194-190 3 2013-04-12 14:01:54.193+02 \N \N +175 3 OWNED \N \N TEST-PROJECT 3 2013-04-12 15:00:49.446+02 \N 4 +176 3 OWNER 173 \N 20130412150557128-205 3 2013-04-12 15:05:57.024+02 \N \N +177 3 OWNER 174 \N 20130412150557128-206 3 2013-04-12 15:05:57.128+02 \N \N +178 3 OWNER 175 \N 20130412150557759-207 3 2013-04-12 15:05:57.759+02 \N \N +179 3 OWNER 176 \N 20130412150557772-208 3 2013-04-12 15:05:57.771+02 \N \N +180 3 OWNER 177 \N 20130412150557784-209 3 2013-04-12 15:05:57.784+02 \N \N +181 3 OWNER 178 \N 20130412150557796-210 3 2013-04-12 15:05:57.796+02 \N \N +182 3 OWNER 179 \N 20130412150557807-211 3 2013-04-12 15:05:57.807+02 \N \N +183 3 OWNER 180 \N 20130412150557818-212 3 2013-04-12 15:05:57.818+02 \N \N +184 3 OWNER 181 \N 20130412150557829-213 3 2013-04-12 15:05:57.828+02 \N \N +185 3 OWNER 182 \N 20130412150557840-214 3 2013-04-12 15:05:57.84+02 \N \N +186 3 OWNER 183 \N 20130412150557851-215 3 2013-04-12 15:05:57.85+02 \N \N +187 3 OWNER 184 \N 20130412150557862-216 3 2013-04-12 15:05:57.861+02 \N \N +188 3 OWNER 185 \N 20130412150557873-217 3 2013-04-12 15:05:57.873+02 \N \N +189 3 OWNER 186 \N 20130412150557884-218 3 2013-04-12 15:05:57.883+02 \N \N +190 3 OWNER 187 \N 20130412150557895-219 3 2013-04-12 15:05:57.894+02 \N \N +191 3 OWNER 188 \N 20130412150557907-220 3 2013-04-12 15:05:57.906+02 \N \N +192 3 OWNER 189 \N 20130412150557922-221 3 2013-04-12 15:05:57.922+02 \N \N +193 3 OWNER 190 \N 20130412150557934-222 3 2013-04-12 15:05:57.934+02 \N \N +194 3 OWNER 191 \N 20130412150557945-223 3 2013-04-12 15:05:57.945+02 \N \N +195 3 OWNER 192 \N 20130412150557957-224 3 2013-04-12 15:05:57.957+02 \N \N +196 3 OWNER 193 \N 20130412150557970-225 3 2013-04-12 15:05:57.969+02 \N \N +197 3 OWNER 194 \N 20130412150557981-226 3 2013-04-12 15:05:57.981+02 \N \N +198 3 OWNER 195 \N 20130412150557993-227 3 2013-04-12 15:05:57.993+02 \N \N +199 3 OWNER 196 \N 20130412150558005-228 3 2013-04-12 15:05:58.004+02 \N \N +200 3 OWNER 197 \N 20130412150558017-229 3 2013-04-12 15:05:58.016+02 \N \N +201 3 OWNER 198 \N 20130412150558029-230 3 2013-04-12 15:05:58.028+02 \N \N +202 3 OWNER 199 \N 20130412150558040-231 3 2013-04-12 15:05:58.04+02 \N \N +203 3 OWNER 200 \N 20130412150558052-232 3 2013-04-12 15:05:58.052+02 \N \N +204 3 OWNER 201 \N 20130412150558064-233 3 2013-04-12 15:05:58.063+02 \N \N +205 3 OWNER 202 \N 20130412150558075-234 3 2013-04-12 15:05:58.074+02 \N \N +206 3 OWNER 203 \N 20130412150558085-235 3 2013-04-12 15:05:58.085+02 \N \N +207 3 OWNER 204 \N 20130412150558096-236 3 2013-04-12 15:05:58.095+02 \N \N +208 3 OWNER 205 \N 20130412150558106-237 3 2013-04-12 15:05:58.106+02 \N \N +209 3 OWNER 206 \N 20130412150558117-238 3 2013-04-12 15:05:58.116+02 \N \N +210 3 OWNER 207 \N 20130412150558127-239 3 2013-04-12 15:05:58.126+02 \N \N +211 3 OWNER 208 \N 20130412150558137-240 3 2013-04-12 15:05:58.136+02 \N \N +212 3 OWNER 209 \N 20130412150558148-241 3 2013-04-12 15:05:58.147+02 \N \N +213 3 OWNER 210 \N 20130412150558159-242 3 2013-04-12 15:05:58.159+02 \N \N +214 3 OWNER 211 \N 20130412150558170-243 3 2013-04-12 15:05:58.169+02 \N \N +215 3 OWNER 212 \N 20130412150558181-244 3 2013-04-12 15:05:58.18+02 \N \N +216 3 OWNER 213 \N 20130412150558191-245 3 2013-04-12 15:05:58.191+02 \N \N +217 3 OWNER 214 \N 20130412150558202-246 3 2013-04-12 15:05:58.202+02 \N \N +218 3 OWNER 215 \N 20130412150558213-247 3 2013-04-12 15:05:58.212+02 \N \N +219 3 OWNER 216 \N 20130412150558224-248 3 2013-04-12 15:05:58.223+02 \N \N +220 3 OWNER 217 \N 20130412150558234-249 3 2013-04-12 15:05:58.234+02 \N \N +221 3 OWNER 218 \N 20130412150558245-250 3 2013-04-12 15:05:58.244+02 \N \N +222 3 OWNER 219 \N 20130412150558256-251 3 2013-04-12 15:05:58.255+02 \N \N +223 3 OWNER 220 \N 20130412150558267-252 3 2013-04-12 15:05:58.267+02 \N \N +224 3 OWNER 221 \N 20130412150558278-253 3 2013-04-12 15:05:58.278+02 \N \N +225 3 OWNER 222 \N 20130412150558289-254 3 2013-04-12 15:05:58.289+02 \N \N +226 3 OWNER 223 \N 20130412150558302-255 3 2013-04-12 15:05:58.301+02 \N \N +227 3 OWNER 224 \N 20130412150558313-256 3 2013-04-12 15:05:58.312+02 \N \N +228 3 OWNER 225 \N 20130412150558324-257 3 2013-04-12 15:05:58.323+02 \N \N +229 3 OWNER 226 \N 20130412150558335-258 3 2013-04-12 15:05:58.334+02 \N \N +230 3 OWNER 227 \N 20130412150558346-259 3 2013-04-12 15:05:58.345+02 \N \N +231 3 OWNER 228 \N 20130412150558356-260 3 2013-04-12 15:05:58.356+02 \N \N +232 3 OWNER 229 \N 20130412150558367-261 3 2013-04-12 15:05:58.366+02 \N \N +233 3 OWNER 230 \N 20130412150558377-262 3 2013-04-12 15:05:58.377+02 \N \N +234 3 OWNER 231 \N 20130412150558388-263 3 2013-04-12 15:05:58.388+02 \N \N +235 3 OWNER 232 \N 20130412150558399-264 3 2013-04-12 15:05:58.399+02 \N \N +236 3 OWNER 233 \N 20130412150558410-265 3 2013-04-12 15:05:58.41+02 \N \N +237 3 OWNER 234 \N 20130412150558421-266 3 2013-04-12 15:05:58.42+02 \N \N +238 3 OWNER 235 \N 20130412150558431-267 3 2013-04-12 15:05:58.43+02 \N \N +239 3 OWNER 236 \N 20130412150558441-268 3 2013-04-12 15:05:58.441+02 \N \N +240 3 OWNER 237 \N 20130412150558452-269 3 2013-04-12 15:05:58.451+02 \N \N +241 3 OWNER 238 \N 20130412150558462-270 3 2013-04-12 15:05:58.462+02 \N \N +242 3 OWNER 239 \N 20130412150558474-271 3 2013-04-12 15:05:58.473+02 \N \N +243 3 OWNER 240 \N 20130412150558485-272 3 2013-04-12 15:05:58.485+02 \N \N +244 3 OWNER 241 \N 20130412150558496-273 3 2013-04-12 15:05:58.495+02 \N \N +245 3 OWNER 242 \N 20130412150558506-274 3 2013-04-12 15:05:58.505+02 \N \N +246 3 OWNER 243 \N 20130412150558517-275 3 2013-04-12 15:05:58.516+02 \N \N +247 3 OWNER 244 \N 20130412150558527-276 3 2013-04-12 15:05:58.527+02 \N \N +248 3 OWNER 245 \N 20130412150558538-277 3 2013-04-12 15:05:58.537+02 \N \N +249 3 OWNER 246 \N 20130412150558548-278 3 2013-04-12 15:05:58.547+02 \N \N +250 3 OWNER 247 \N 20130412150558558-279 3 2013-04-12 15:05:58.558+02 \N \N +251 3 OWNER 248 \N 20130412150558569-280 3 2013-04-12 15:05:58.568+02 \N \N +252 3 OWNER 249 \N 20130412150558579-281 3 2013-04-12 15:05:58.579+02 \N \N +253 3 OWNER 250 \N 20130412150558590-282 3 2013-04-12 15:05:58.589+02 \N \N +254 3 OWNER 251 \N 20130412150558600-283 3 2013-04-12 15:05:58.6+02 \N \N +255 3 OWNER 252 \N 20130412150558611-284 3 2013-04-12 15:05:58.61+02 \N \N +256 3 OWNER 253 \N 20130412150558621-285 3 2013-04-12 15:05:58.62+02 \N \N +257 3 OWNER 254 \N 20130412150558709-286 3 2013-04-12 15:05:58.708+02 \N \N +258 3 OWNER 255 \N 20130412150558720-287 3 2013-04-12 15:05:58.719+02 \N \N +259 3 OWNER 256 \N 20130412150558731-288 3 2013-04-12 15:05:58.73+02 \N \N +260 3 OWNER 257 \N 20130412150558742-289 3 2013-04-12 15:05:58.741+02 \N \N +261 3 OWNER 258 \N 20130412150558752-290 3 2013-04-12 15:05:58.752+02 \N \N +262 3 OWNER 259 \N 20130412150558763-291 3 2013-04-12 15:05:58.762+02 \N \N +263 3 OWNER 260 \N 20130412150558773-292 3 2013-04-12 15:05:58.773+02 \N \N +264 3 OWNER 261 \N 20130412150558784-293 3 2013-04-12 15:05:58.784+02 \N \N +265 3 OWNER 262 \N 20130412150558796-294 3 2013-04-12 15:05:58.795+02 \N \N +266 3 OWNER 263 \N 20130412150558807-295 3 2013-04-12 15:05:58.807+02 \N \N +267 3 OWNER 264 \N 20130412150558818-296 3 2013-04-12 15:05:58.818+02 \N \N +268 3 OWNER 265 \N 20130412150558828-297 3 2013-04-12 15:05:58.828+02 \N \N +269 3 OWNER 266 \N 20130412150558839-298 3 2013-04-12 15:05:58.838+02 \N \N +270 3 OWNER 267 \N 20130412150558849-299 3 2013-04-12 15:05:58.849+02 \N \N +271 3 OWNER 268 \N 20130412150558860-300 3 2013-04-12 15:05:58.859+02 \N \N +272 3 OWNER 269 \N 20130412150558870-301 3 2013-04-12 15:05:58.869+02 \N \N +273 3 OWNER 270 \N 20130412150558881-302 3 2013-04-12 15:05:58.88+02 \N \N +274 3 OWNER 271 \N 20130412150558892-303 3 2013-04-12 15:05:58.892+02 \N \N +275 3 OWNER 272 \N 20130412150558904-304 3 2013-04-12 15:05:58.903+02 \N \N +276 3 OWNER 273 \N 20130412150558915-305 3 2013-04-12 15:05:58.914+02 \N \N +277 3 OWNER 274 \N 20130412150558925-306 3 2013-04-12 15:05:58.925+02 \N \N +278 3 OWNER 275 \N 20130412150558936-307 3 2013-04-12 15:05:58.935+02 \N \N +279 3 OWNER 276 \N 20130412150558947-308 3 2013-04-12 15:05:58.946+02 \N \N +280 3 OWNER 277 \N 20130412150558957-309 3 2013-04-12 15:05:58.957+02 \N \N +281 3 OWNER 278 \N 20130412150558968-310 3 2013-04-12 15:05:58.967+02 \N \N +282 3 OWNER 279 \N 20130412150558978-311 3 2013-04-12 15:05:58.978+02 \N \N +283 3 OWNER 280 \N 20130412150558989-312 3 2013-04-12 15:05:58.988+02 \N \N +284 3 OWNER 281 \N 20130412150558999-313 3 2013-04-12 15:05:58.999+02 \N \N +285 3 OWNER 282 \N 20130412150559009-314 3 2013-04-12 15:05:59.009+02 \N \N +286 3 OWNER 283 \N 20130412150559020-315 3 2013-04-12 15:05:59.02+02 \N \N +287 3 OWNER 284 \N 20130412150559031-316 3 2013-04-12 15:05:59.03+02 \N \N +288 3 OWNER 285 \N 20130412150559041-317 3 2013-04-12 15:05:59.041+02 \N \N +289 3 OWNER 286 \N 20130412150559052-318 3 2013-04-12 15:05:59.051+02 \N \N +290 3 OWNER 287 \N 20130412150559063-319 3 2013-04-12 15:05:59.062+02 \N \N +291 3 OWNER 288 \N 20130412150559074-320 3 2013-04-12 15:05:59.073+02 \N \N +292 3 OWNER 289 \N 20130412150559085-321 3 2013-04-12 15:05:59.085+02 \N \N +293 3 OWNER 290 \N 20130412150559097-322 3 2013-04-12 15:05:59.096+02 \N \N +294 3 OWNER 291 \N 20130412150559109-323 3 2013-04-12 15:05:59.108+02 \N \N +295 3 OWNER 292 \N 20130412150559120-324 3 2013-04-12 15:05:59.119+02 \N \N +296 3 OWNER 293 \N 20130412150559131-325 3 2013-04-12 15:05:59.13+02 \N \N +297 3 OWNER 294 \N 20130412150559143-326 3 2013-04-12 15:05:59.143+02 \N \N +298 3 OWNER 295 \N 20130412150559160-327 3 2013-04-12 15:05:59.16+02 \N \N +299 3 OWNER 296 \N 20130412150559173-328 3 2013-04-12 15:05:59.172+02 \N \N +300 3 OWNER 297 \N 20130412150559186-329 3 2013-04-12 15:05:59.185+02 \N \N +301 3 OWNER 298 \N 20130412150559198-330 3 2013-04-12 15:05:59.198+02 \N \N +302 3 OWNER 299 \N 20130412150559210-331 3 2013-04-12 15:05:59.209+02 \N \N +303 3 OWNER 300 \N 20130412150559222-332 3 2013-04-12 15:05:59.221+02 \N \N +304 3 OWNER 301 \N 20130412150559234-333 3 2013-04-12 15:05:59.233+02 \N \N +305 3 OWNER 302 \N 20130412150559247-334 3 2013-04-12 15:05:59.246+02 \N \N +306 3 OWNER 303 \N 20130412150559258-335 3 2013-04-12 15:05:59.258+02 \N \N +307 3 OWNER 304 \N 20130412150559270-336 3 2013-04-12 15:05:59.269+02 \N \N +308 3 OWNER 305 \N 20130412150559280-337 3 2013-04-12 15:05:59.28+02 \N \N +309 3 OWNER 306 \N 20130412150559291-338 3 2013-04-12 15:05:59.291+02 \N \N +310 3 OWNER 307 \N 20130412150559302-339 3 2013-04-12 15:05:59.301+02 \N \N +311 3 OWNER 308 \N 20130412150559312-340 3 2013-04-12 15:05:59.312+02 \N \N +312 3 OWNER 309 \N 20130412150559323-341 3 2013-04-12 15:05:59.322+02 \N \N +313 3 OWNER 310 \N 20130412150559333-342 3 2013-04-12 15:05:59.332+02 \N \N +314 3 OWNER 311 \N 20130412150559344-343 3 2013-04-12 15:05:59.343+02 \N \N +315 3 OWNER 312 \N 20130412150559354-344 3 2013-04-12 15:05:59.354+02 \N \N +316 3 OWNER 313 \N 20130412150559364-345 3 2013-04-12 15:05:59.364+02 \N \N +317 3 OWNER 314 \N 20130412150559375-346 3 2013-04-12 15:05:59.375+02 \N \N +318 3 OWNER 315 \N 20130412150559385-347 3 2013-04-12 15:05:59.385+02 \N \N +319 3 OWNER 316 \N 20130412150559396-348 3 2013-04-12 15:05:59.395+02 \N \N +320 3 OWNER 317 \N 20130412150559406-349 3 2013-04-12 15:05:59.406+02 \N \N +321 3 OWNER 318 \N 20130412150559417-350 3 2013-04-12 15:05:59.416+02 \N \N +322 3 OWNER 319 \N 20130412150559427-351 3 2013-04-12 15:05:59.427+02 \N \N +323 3 OWNER 320 \N 20130412150559438-352 3 2013-04-12 15:05:59.437+02 \N \N +324 3 OWNER 321 \N 20130412150559449-353 3 2013-04-12 15:05:59.448+02 \N \N +325 3 OWNER 322 \N 20130412150559460-354 3 2013-04-12 15:05:59.46+02 \N \N +326 3 OWNER 323 \N 20130412150559471-355 3 2013-04-12 15:05:59.471+02 \N \N +327 3 OWNER 324 \N 20130412150559482-356 3 2013-04-12 15:05:59.481+02 \N \N +328 3 OWNER 325 \N 20130412150559492-357 3 2013-04-12 15:05:59.491+02 \N \N +329 3 OWNER 326 \N 20130412150559502-358 3 2013-04-12 15:05:59.501+02 \N \N +330 3 OWNER 327 \N 20130412150559512-359 3 2013-04-12 15:05:59.512+02 \N \N +331 3 OWNER 328 \N 20130412150559523-360 3 2013-04-12 15:05:59.522+02 \N \N +332 3 OWNER 329 \N 20130412150559533-361 3 2013-04-12 15:05:59.533+02 \N \N +333 3 OWNER 330 \N 20130412150559544-362 3 2013-04-12 15:05:59.543+02 \N \N +334 3 OWNER 331 \N 20130412150559554-363 3 2013-04-12 15:05:59.554+02 \N \N +335 3 OWNER 332 \N 20130412150559565-364 3 2013-04-12 15:05:59.564+02 \N \N +336 3 OWNER 333 \N 20130412150559575-365 3 2013-04-12 15:05:59.575+02 \N \N +337 3 OWNER 334 \N 20130412150559586-366 3 2013-04-12 15:05:59.585+02 \N \N +338 3 OWNER 335 \N 20130412150559596-367 3 2013-04-12 15:05:59.596+02 \N \N +339 3 OWNER 336 \N 20130412150559607-368 3 2013-04-12 15:05:59.606+02 \N \N +340 3 OWNER 337 \N 20130412150559617-369 3 2013-04-12 15:05:59.617+02 \N \N +341 3 OWNER 338 \N 20130412150559628-370 3 2013-04-12 15:05:59.627+02 \N \N +342 3 OWNER 339 \N 20130412150559639-371 3 2013-04-12 15:05:59.638+02 \N \N +343 3 OWNER 340 \N 20130412150559649-372 3 2013-04-12 15:05:59.649+02 \N \N +344 3 OWNER 341 \N 20130412150559659-373 3 2013-04-12 15:05:59.659+02 \N \N +345 3 OWNER 342 \N 20130412150559671-374 3 2013-04-12 15:05:59.67+02 \N \N +346 3 OWNER 343 \N 20130412150559681-375 3 2013-04-12 15:05:59.681+02 \N \N +349 2 OWNER \N 16 20130412153659945-390 2 2013-04-12 15:37:02.716+02 \N \N +351 5 OWNED \N \N SCREENING-EXAMPLES 3 2013-04-12 15:51:38.019+02 \N 2 +353 6 OWNED \N \N TEST-PROJECT 3 2013-04-15 09:17:45.105+02 \N 4 +354 6 OWNER 345 \N 20130415091923485-402 3 2013-04-15 09:19:23.381+02 \N \N +356 6 OWNER 346 \N 20130415095748527-404 3 2013-04-15 09:57:48.361+02 \N \N +357 6 OWNER 347 \N 20130415095823341-405 3 2013-04-15 09:58:23.219+02 \N \N +358 6 OWNER 348 \N 20130415095828217-406 3 2013-04-15 09:58:28.095+02 \N \N +359 6 OWNER \N 22 20130415100158230-407 2 2013-04-15 10:01:59.104+02 \N \N +360 6 OWNER \N 23 20130415100238098-408 2 2013-04-15 10:02:38.835+02 \N \N +361 6 OWNER \N 24 20130415100308111-409 2 2013-04-15 10:03:08.932+02 \N \N +355 6 OWNER \N 21 20130415093804724-403 2 2013-04-15 09:38:06.047+02 2013-04-15 10:12:40.811+02 \N +362 5 OWNER \N \N 20130416170612564-413 3 2013-04-16 17:06:12.443+02 2013-04-16 17:22:27.874799+02 \N +352 5 OWNER \N \N 20130412154242352-393 3 2013-04-12 15:53:05.281+02 2013-04-16 17:01:38.718536+02 \N +363 5 OWNER 350 \N 20130417094911967-426 3 2013-04-17 09:49:11.832+02 \N \N +364 2 OWNER \N 31 20130424111751432-431 2 2013-04-24 11:17:54.024+02 \N \N +365 2 OWNER \N 32 20130424111751209-430 2 2013-04-24 11:17:54.278+02 \N \N +\. + + +-- +-- Data for Name: experiment_type_property_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiment_type_property_types (id, exty_id, prty_id, is_mandatory, is_managed_internally, pers_id_registerer, registration_timestamp, ordinal, section, script_id, is_shown_edit, show_raw_value) FROM stdin; +1 2 28 f f 1 2013-04-12 10:04:56.658885+02 4 \N \N f f +\. + + +-- +-- Data for Name: experiment_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiment_types (id, code, description, dbin_id, modification_timestamp, validation_script_id) FROM stdin; +1 UNKNOWN Unknown 1 2013-04-12 10:04:52.629266+02 \N +2 HT_SEQUENCING High Throughput Sequencing (e.g. Illumina HiSeq, Illumina GA) 1 2013-04-12 10:04:56.658885+02 \N +3 MS_SEARCH MS_SEARCH experiment 1 2013-04-12 10:05:45.583358+02 \N +4 HCS_PLATONIC Experiment containing idealized data for testing 1 2013-04-12 10:48:12.44289+02 \N +5 MICROSCOPY_PLATONIC Experiment containing idealized data for testing 1 2013-04-12 10:48:30.956307+02 \N +\. + + +-- +-- Data for Name: experiments_all; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY experiments_all (id, perm_id, code, exty_id, pers_id_registerer, registration_timestamp, modification_timestamp, proj_id, del_id, orig_del, is_public, pers_id_modifier, version) FROM stdin; +5 20130412155138019-396 EXP-2 5 3 2013-04-12 15:51:37.937762+02 2013-04-17 09:49:42.458+02 2 \N \N f 2 0 +6 20130415091745099-401 TEST-EXPERIMENT-2 1 3 2013-04-15 09:17:44.953707+02 2013-04-15 10:12:40.738+02 4 \N \N f 3 0 +3 20130412150049446-204 TEST-EXPERIMENT 4 3 2013-04-12 15:00:49.359645+02 2013-04-15 11:16:25.168+02 4 \N \N f 3 1 +2 20130412105232616-2 EXP-1 4 3 2013-04-12 10:52:32.521635+02 2013-04-24 11:17:54.278+02 2 \N \N f 2 0 +\. + + +-- +-- Data for Name: external_data; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY external_data (data_id, share_id, size, location, ffty_id, loty_id, cvte_id_stor_fmt, is_complete, cvte_id_store, status, present_in_archive, speed_hint, storage_confirmation) FROM stdin; +3 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/0d/71/e9/20130412142205843-196 10 1 1 U \N AVAILABLE f -50 t +5 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/40/26/e3/20130412142543232-197 10 1 1 U \N AVAILABLE f -50 t +2 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/4f/6d/30/20130412142942295-198 8 1 1 U \N AVAILABLE f -50 t +4 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/44/10/06/20130412143119901-199 9 1 1 T \N AVAILABLE f -50 t +29 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/cd/53/dc/20130417094934693-427 8 1 1 U \N AVAILABLE f -50 t +8 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/c0/e2/31/20130412151710024-379 10 1 1 U \N AVAILABLE f -50 t +9 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/7e/71/80/20130412152036861-380 9 1 1 T \N AVAILABLE f -50 t +12 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/2e/ac/5a/20130412153118625-384 9 1 1 T \N AVAILABLE f -50 t +16 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/29/f1/0c/20130412153659945-390 2 1 1 U \N AVAILABLE f -50 t +28 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/67/85/36/20130417094936021-428 9 1 1 T \N AVAILABLE f -50 t +21 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/06/e5/ad/20130415093804724-403 2 1 1 U \N AVAILABLE f -50 t +22 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/1c/84/72/20130415100158230-407 2 1 1 U \N AVAILABLE f -50 t +23 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/91/0a/10/20130415100238098-408 2 1 1 U \N AVAILABLE f -50 t +24 2 1 1FD3FF61-1576-4908-AE3D-296E60B4CE06/2f/7a/b9/20130415100308111-409 2 1 1 U \N AVAILABLE f -50 t +32 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/4f/5a/52/20130424111751209-430 2 1 1 U \N AVAILABLE f -50 t +31 1 \N 1FD3FF61-1576-4908-AE3D-296E60B4CE06/fe/c5/45/20130424111751432-431 2 1 1 U \N AVAILABLE f -50 t +\. + + +-- +-- Data for Name: external_data_management_systems; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY external_data_management_systems (id, dbin_id, code, label, url_template, is_openbis) FROM stdin; +\. + + +-- +-- Data for Name: file_format_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY file_format_types (id, code, description, dbin_id) FROM stdin; +1 HDF5 Hierarchical Data Format File, version 5 1 +2 PROPRIETARY Proprietary Format File 1 +3 SRF Sequence Read Format File 1 +4 TIFF TIFF File 1 +5 TSV Tab Separated Values File 1 +6 XML XML File 1 +7 FASTQ_PHRED_64 FastQ Format with PHRED+64 quality values (as deliverd by Illumina GA Pipeline >= 1.3) 1 +8 PNG \N 1 +9 UNKNOWN Unknown file format 1 +10 JPG \N 1 +\. + + +-- +-- Data for Name: filters; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY filters (id, dbin_id, name, description, registration_timestamp, pers_id_registerer, modification_timestamp, expression, is_public, grid_id) FROM stdin; +\. + + +-- +-- Data for Name: grid_custom_columns; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY grid_custom_columns (id, dbin_id, code, label, description, registration_timestamp, pers_id_registerer, modification_timestamp, expression, is_public, grid_id) FROM stdin; +\. + + +-- +-- Data for Name: link_data; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY link_data (data_id, edms_id, external_code) FROM stdin; +\. + + +-- +-- Data for Name: locator_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY locator_types (id, code, description) FROM stdin; +1 RELATIVE_LOCATION Relative Location +\. + + +-- +-- Data for Name: material_properties; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY material_properties (id, mate_id, mtpt_id, value, registration_timestamp, pers_id_author, modification_timestamp, pers_id_registerer, cvte_id, mate_prop_id) FROM stdin; +1 1 1 Water 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:45.472+02 3 \N \N +2 2 1 Salt 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:45.473+02 3 \N \N +3 3 1 Carbon dioxid 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:45.475+02 3 \N \N +4 6 3 4-aminobutyrate aminotransferase 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.501+02 3 \N \N +5 6 4 ABAT 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.501+02 3 \N \N +6 7 4 FBXO43 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.502+02 3 \N \N +7 7 3 F-box protein 43 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.502+02 3 \N \N +8 8 3 ubiquitin specific peptidase 27, X-linked 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.502+02 3 \N \N +9 8 4 USP27X 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.503+02 3 \N \N +10 9 3 PRAME family member 18 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.504+02 3 \N \N +11 9 4 PRAMEF18 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.504+02 3 \N \N +12 10 7 \N 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.725+02 3 \N 6 +13 10 5 GATACA 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.725+02 3 \N \N +14 11 7 \N 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.726+02 3 \N 6 +15 11 5 TAGACA 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.726+02 3 \N \N +16 12 7 \N 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.728+02 3 \N 7 +17 12 5 CACAGA 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.729+02 3 \N \N +18 13 5 GAAGTAT 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.73+02 3 \N \N +19 13 7 \N 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.73+02 3 \N 8 +20 14 7 \N 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.731+02 3 \N 9 +21 14 5 AAGATA 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:46.731+02 3 \N \N +\. + + +-- +-- Data for Name: material_properties_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY material_properties_history (id, mate_id, mtpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) FROM stdin; +\. + + +-- +-- Data for Name: material_type_property_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY material_type_property_types (id, maty_id, prty_id, is_mandatory, is_managed_internally, registration_timestamp, pers_id_registerer, ordinal, section, script_id, is_shown_edit, show_raw_value) FROM stdin; +1 1 1 f f 2013-04-12 10:05:46.102969+02 1 2 \N \N f f +2 2 1 f f 2013-04-12 10:05:46.102969+02 1 2 \N \N f f +3 3 1 f f 2013-04-12 10:05:46.102969+02 1 3 \N \N f f +4 3 99 f f 2013-04-12 10:05:46.102969+02 1 5 \N \N f f +5 4 102 t f 2013-04-12 10:05:46.102969+02 1 2 \N \N f f +6 4 1 f f 2013-04-12 10:05:46.102969+02 1 4 \N \N f f +7 4 100 t f 2013-04-12 10:05:46.102969+02 1 5 \N \N f f +8 4 101 f f 2013-04-12 10:05:46.102969+02 1 6 \N \N f f +\. + + +-- +-- Data for Name: material_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY material_types (id, code, description, dbin_id, modification_timestamp, validation_script_id) FROM stdin; +1 COMPOUND Compound 1 2013-04-12 10:05:46.102969+02 \N +2 CONTROL Control of a control layout 1 2013-04-12 10:05:46.102969+02 \N +3 GENE Gene 1 2013-04-12 10:05:46.102969+02 \N +4 SIRNA Oligo nucleotide 1 2013-04-12 10:05:46.102969+02 \N +\. + + +-- +-- Data for Name: materials; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY materials (id, code, maty_id, pers_id_registerer, registration_timestamp, modification_timestamp, dbin_id) FROM stdin; +1 H2O 1 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:45.458+02 1 +2 NACL 1 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:45.473+02 1 +3 CO2 1 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:45.474+02 1 +4 GFP 2 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.383+02 1 +5 ABC 2 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.384+02 1 +6 G1 3 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.5+02 1 +7 G2 3 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.501+02 1 +8 G3 3 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.502+02 1 +9 G4 3 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.503+02 1 +10 SIRNA-1 4 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.725+02 1 +11 SIRNA-2 4 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.726+02 1 +12 SIRNA-3 4 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.727+02 1 +13 SIRNA-4 4 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.73+02 1 +14 SIRNA-5 4 3 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:46.731+02 1 +\. + + +-- +-- Data for Name: metaproject_assignments_all; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY metaproject_assignments_all (id, mepr_id, expe_id, samp_id, data_id, mate_id, del_id, creation_date) FROM stdin; +\. + + +-- +-- Data for Name: metaprojects; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY metaprojects (id, name, description, owner, private, creation_date) FROM stdin; +179 JS_TEST_METAPROJECT_POWER_USER \N 7 t 2013-04-24 14:50:03.7003+02 +183 JS_TEST_METAPROJECT \N 4 t 2013-04-24 14:50:04.933173+02 +\. + + +-- +-- Data for Name: persons; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY persons (id, first_name, last_name, user_id, email, dbin_id, space_id, registration_timestamp, pers_id_registerer, display_settings, is_active) FROM stdin; +1 System User system 1 \N 2013-04-12 10:04:52.629266+02 \N \N t +8 Günter Mallarmé power_user franz-josef.elmer@systemsx.ch 1 \N 2013-04-15 09:11:10.420639+02 1 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t +6 Stéphane Lévi-Strauss default_space_admin franz-josef.elmer@systemsx.ch 1 \N 2013-04-12 14:52:35.217845+02 3 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t +9 Karel Čapek selenium franz-josef.elmer@systemsx.ch 1 \N 2013-04-23 12:02:27.70936+02 1 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t +5 Ryszard Kapuściński openbis_screening_test_js franz-josef.elmer@systemsx.ch 1 \N 2013-04-12 14:37:25.404454+02 3 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t +7 Günter Jelinek test_space_admin franz-josef.elmer@systemsx.ch 1 \N 2013-04-12 14:58:47.459521+02 3 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t +3 Claude Lévi-Strauss admin franz-josef.elmer@systemsx.ch 1 \N 2013-04-12 10:07:44.572139+02 1 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t +2 Claude Kapuściński etlserver franz-josef.elmer@systemsx.ch 1 \N 2013-04-12 10:06:08.930166+02 1 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t +4 Elfriede Čapek openbis_test_js franz-josef.elmer@systemsx.ch 1 \N 2013-04-12 14:35:53.704419+02 1 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t +\. + + +-- +-- Data for Name: post_registration_dataset_queue; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY post_registration_dataset_queue (id, ds_id) FROM stdin; +\. + + +-- +-- Data for Name: project_relationships_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY project_relationships_history (id, main_proj_id, relation_type, expe_id, space_id, entity_perm_id, pers_id_author, valid_from_timestamp, valid_until_timestamp) FROM stdin; +3 2 OWNED \N 2 PLATONIC 3 2013-04-12 10:39:42.922+02 \N +4 2 OWNER 2 \N 20130412105232616-2 3 2013-04-12 10:52:32.616+02 \N +6 4 OWNED \N 3 TEST 3 2013-04-12 15:00:31.345+02 \N +7 4 OWNER 3 \N 20130412150049446-204 3 2013-04-12 15:00:49.446+02 \N +8 4 OWNER \N \N 20130412154209329-392 3 2013-04-12 15:42:09.33+02 2013-04-12 15:46:34.880467+02 +9 2 OWNER 5 \N 20130412155138019-396 3 2013-04-12 15:51:38.019+02 \N +10 4 OWNER 6 \N 20130415091745099-401 3 2013-04-15 09:17:45.105+02 \N +\. + + +-- +-- Data for Name: projects; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY projects (id, perm_id, code, space_id, pers_id_leader, description, pers_id_registerer, registration_timestamp, modification_timestamp, pers_id_modifier, version) FROM stdin; +2 20130412103942912-1 SCREENING-EXAMPLES 2 \N \N 3 2013-04-12 10:39:42.885812+02 2013-04-12 15:51:38.018+02 3 0 +4 20130412150031345-203 TEST-PROJECT 3 \N \N 3 2013-04-12 15:00:31.338106+02 2013-04-15 11:16:02.255+02 3 3 +\. + + +-- +-- Data for Name: property_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY property_types (id, code, description, label, daty_id, registration_timestamp, pers_id_registerer, covo_id, is_managed_internally, is_internal_namespace, dbin_id, maty_prop_id, schema, transformation) FROM stdin; +1 DESCRIPTION A Description Description 1 2013-04-12 10:04:52.629266+02 1 \N f f 1 \N \N \N +2 AGILENT_KIT Agilent Kit 7 2013-04-12 10:04:56.658885+02 1 2 f f 1 \N \N \N +3 ALIGNMENT_SOFTWARE Alignment software 7 2013-04-12 10:04:56.658885+02 1 3 f f 1 \N \N \N +4 ANALYSIS_FINISHED Analysis finished 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +5 BARCODE_COMPLEXITY_CHECKER Barcode_Complexity_Checker 2 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +6 BASESCOVERED bases Covered 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +7 BIOLOGICAL_SAMPLE_ARRIVED Arrival Date of Biological Sample 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +8 CASAVA_VERSION Casava Version 7 2013-04-12 10:04:56.658885+02 1 4 f f 1 \N \N \N +9 CELL_PLASTICITY_SYSTEMSX Cell Plasticity (SystemsX) 5 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +10 CHROMCOUNT chrom Count 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +11 CLUSTER_GENERATION_KIT_VERSION CS Generation Kit Version 7 2013-04-12 10:04:56.658885+02 1 5 f f 1 \N \N \N +12 CLUSTER_STATION Cluster Station 7 2013-04-12 10:04:56.658885+02 1 6 f f 1 \N \N \N +13 CONCENTRATION Conc. [ng/μl] 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +14 CONCENTRATION_FLOWLANE Concentration in flow lane [pM] 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +15 CONCENTRATION_ORIGINAL_ILLUMINA Concentration (original) [ng/μl] 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +16 CONCENTRATION_PREPARED_ILLUMINA Concentration (prepared) [ng/μl] 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +17 CONTACT_PERSON_EMAIL Email of Contact Person 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +18 CONTACT_PERSON_NAME Name of Contact Person 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +19 CONTROL_LANE Control Lane 7 2013-04-12 10:04:56.658885+02 1 7 f f 1 \N \N \N +20 CREATED_ON_CS Clustering date 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +21 CS_PROTOCOL_VERSION CS Protocol Version 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +22 CYCLES Cycles 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +23 DATA_TRANSFERRED Data transferred 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +24 DNA_CONCENTRATION_OF_LIBRARY DNA concentration of library (nM) 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +25 DNA_CONCENTRATION_POOL DNA conc. [nM] - customer value 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +26 DNA_CONCENTRATION_QGF DNA concentration of Pool [nM] 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +27 END_TYPE Paired End / Single Read 7 2013-04-12 10:04:56.658885+02 1 8 f f 1 \N \N \N +28 EXPERIMENT_DESIGN Experiment Design 7 2013-04-12 10:04:56.658885+02 1 9 f f 1 \N \N \N +29 EXTERNAL_SAMPLE_NAME External Sample Name 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +30 FLOWCELLTYPE Flow Cell Type 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +31 FLOW_CELL_SEQUENCED_ON Sequencing started 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +32 FRAGMENT_SIZE_BASE_PAIRS Fragment Size [base pairs] 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +33 FRAGMENT_SIZE_PREPARED_ILLUMINA Fragment Size (prepared) [base (pairs)] 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +34 ILLUMINA_PIPELINE_VERSION Pipeline Version 7 2013-04-12 10:04:56.658885+02 1 17 f f 1 \N \N \N +35 INDEX1 Index 1 7 2013-04-12 10:04:56.658885+02 1 10 f f 1 \N \N \N +36 INDEX2 Index 2 7 2013-04-12 10:04:56.658885+02 1 11 f f 1 \N \N \N +37 INDEXREAD Length of Index Read1 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +38 INDEXREAD2 Length of Index Read2 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +39 INVOICE Invoice sent? 5 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +40 ISCOMPRESSED Is Compressed 5 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +41 ISSUED_COMMAND Issued Command 2 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +42 ISSWAPPED Is byte swapped 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +43 KIT Library preparation kit 7 2013-04-12 10:04:56.658885+02 1 12 f f 1 \N \N \N +44 KIT_PREPARED Sample processed 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +45 LANECOUNT Lane Count 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +46 LIBRARY_PROCESSING_FAILED Library processing failed 5 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +47 LIBRARY_PROCESSING_POSSIBLE_YES_NO Library processing possible 7 2013-04-12 10:04:56.658885+02 1 22 f f 1 \N \N \N +48 LIBRARY_PROCESSING_SUCCESSFUL Library processing successful 5 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +49 LOT Kit Lot # 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +50 MACS_VERSION MACS VERSION 7 2013-04-12 10:04:56.658885+02 1 13 f f 1 \N \N \N +51 MAPPED_READS Mapped reads 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +52 MAX Maximum 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +53 MEAN Mean 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +54 MIN Minimum 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +55 MISMATCH_IN_INDEX Mismatch in Index 7 2013-04-12 10:04:56.658885+02 1 14 f f 1 \N \N \N +56 NANO_DROP Nano Drop 7 2013-04-12 10:04:56.658885+02 1 15 f f 1 \N \N \N +57 NCBI_ORGANISM_TAXONOMY Organism (NCBI Taxonomy) 7 2013-04-12 10:04:56.658885+02 1 16 f f 1 \N \N \N +58 NM_DNA Calculated DNA concentration of library (nM) 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +59 NOTES Notes 2 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +60 NUMBER_OF_ATTACHMENTS Number of Attachments 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +61 PAIRED_END_KIT Paired End Kit 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +62 PERCENTAGE_ONE_MISMATCH_READS_INDEX % One Mismatch Reads (Index) 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +63 PERCENTAGE_PASSED_FILTERING % Passes Illumina Filtering (PF) 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +64 PERCENTAGE_PERFECT_INDEX_READS % Perfect Index Reads 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +65 PERCENTAGE_RAW_CLUSTERS_PER_LANE % of raw clusters per lane 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +66 PREPARED_BY Prepared by 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +67 PRIMARYDATASIZE primary Data Size 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +68 PRIMARYINDEXSIZE primary Index Size 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +69 PRINCIPAL_INVESTIGATOR_EMAIL Email of Principal Investigator 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +70 PRINCIPAL_INVESTIGATOR_NAME Name of Principal Investigator 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +71 QC_AT_DBSSE QC at D-BSSE 7 2013-04-12 10:04:56.658885+02 1 22 f f 1 \N \N \N +72 QC_REQUIRED QC required 7 2013-04-12 10:04:56.658885+02 1 22 f f 1 \N \N \N +73 RUNNINGTIME Running Time 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +74 RUN_FOLDER_NAME Run Folder Name 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +75 SAMPLE_KIND Sample Kind 7 2013-04-12 10:04:56.658885+02 1 18 f f 1 \N \N \N +76 SAMTOOLS_FLAGSTAT Samtools Flagstat Output 2 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +77 SBS_KIT SBS Kit 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +78 SBS_SEQUENCING_KIT_VERSION SBS Sequencing Kit Version 7 2013-04-12 10:04:56.658885+02 1 19 f f 1 \N \N \N +79 SEQUENCER Sequencer 7 2013-04-12 10:04:56.658885+02 1 20 f f 1 \N \N \N +80 SEQUENCER_FINISHED Sequencer finished 6 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +81 STARTING_AMOUNT_OF_SAMPLE_IN_NG Starting amount of sample (ng) 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +82 STD Standard deviation 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +83 SURFACECOUNT Surface Count 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +84 SWATHCOUNT Swath Count 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +85 TILECOUNT Tile Count 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +86 TOTAL_READS Total reads 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +87 UL_DNA Calculated ul DNA for 2nM stock 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +88 UL_EB Calculated ul EB for 2nM stock 4 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +89 UL_STOCK ul of 2nM stock 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +90 UNIQUE_BARCODES Unique Barcodes in Pool? 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +91 VERSION Version 1 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +92 YIELD_MBASES Yield(Mbases) 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +93 ZOOMLEVELS zoom Levels 3 2013-04-12 10:04:56.658885+02 1 \N f f 1 \N \N \N +94 ANALYSIS_PROCEDURE Analysis procedure 1 2013-04-12 10:05:46.102969+02 1 \N f t 1 \N \N \N +95 RESOLUTION Resolution 1 2013-04-12 10:05:46.102969+02 1 \N f t 1 \N \N \N +96 PLATE_GEOMETRY Plate Geometry 7 2013-04-12 10:05:46.102969+02 1 24 t t 1 \N \N \N +97 CONTROL Control 8 2013-04-12 10:05:46.102969+02 1 \N t f 1 2 \N \N +98 GENE Gene 8 2013-04-12 10:05:46.102969+02 1 \N t f 1 3 \N \N +99 GENE_SYMBOLS Gene symbols 1 2013-04-12 10:05:46.102969+02 1 \N t f 1 \N \N \N +100 INHIBITOR_OF Inhibitor Of 8 2013-04-12 10:05:46.102969+02 1 \N t f 1 3 \N \N +101 LIBRARY_ID Library ID 1 2013-04-12 10:05:46.102969+02 1 \N t f 1 \N \N \N +102 NUCLEOTIDE_SEQUENCE Nucleotide Sequence 1 2013-04-12 10:05:46.102969+02 1 \N t f 1 \N \N \N +103 SIRNA siRNA 8 2013-04-12 10:05:46.102969+02 1 \N t f 1 4 \N \N +\. + + +-- +-- Data for Name: queries; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY queries (id, dbin_id, name, description, registration_timestamp, pers_id_registerer, modification_timestamp, expression, is_public, query_type, entity_type_code, db_key) FROM stdin; +1 1 Test Query \N 2013-04-15 13:42:16.242704+02 3 2013-04-15 13:42:16.285+02 SELECT 'test_value' as test_column t GENERIC \N test-query-database +\. + + +-- +-- Data for Name: relationship_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY relationship_types (id, code, label, parent_label, child_label, description, registration_timestamp, pers_id_registerer, is_managed_internally, is_internal_namespace, dbin_id) FROM stdin; +1 PARENT_CHILD Parent - Child Parent Child Parent - Child relationship 2013-04-12 10:04:52.629266+02 1 t t 1 +2 PLATE_CONTROL_LAYOUT Plate - Control Layout Plate Control Layout Plate - Control Layout relationship 2013-04-12 10:04:52.629266+02 1 t t 1 +\. + + +-- +-- Data for Name: role_assignments; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY role_assignments (id, role_code, space_id, dbin_id, pers_id_grantee, ag_id_grantee, pers_id_registerer, registration_timestamp) FROM stdin; +1 ETL_SERVER \N 1 2 \N 1 2013-04-12 10:06:08.930166+02 +2 ADMIN \N 1 3 \N 1 2013-04-12 10:07:44.572139+02 +3 ADMIN \N 1 4 \N 3 2013-04-12 14:37:02.947129+02 +4 ADMIN \N 1 5 \N 3 2013-04-12 14:37:33.612726+02 +6 ADMIN 3 \N 7 \N 3 2013-04-12 15:22:02.603332+02 +7 ADMIN \N 1 9 \N 3 2013-04-23 15:15:09.53293+02 +\. + + +-- +-- Data for Name: sample_properties; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY sample_properties (id, samp_id, stpt_id, value, cvte_id, mate_prop_id, pers_id_registerer, registration_timestamp, pers_id_author, modification_timestamp) FROM stdin; +1 2 73 \N 243 \N 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:48.03+02 +2 3 73 \N 243 \N 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:48.033+02 +3 4 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.211+02 +4 4 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.211+02 +5 5 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.212+02 +6 5 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.212+02 +7 6 74 \N \N 12 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.213+02 +8 6 75 \N \N 7 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.214+02 +9 7 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.215+02 +10 7 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.215+02 +11 8 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.216+02 +12 8 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.217+02 +13 9 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.218+02 +14 9 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.218+02 +15 10 75 \N \N 7 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.219+02 +16 10 74 \N \N 12 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.219+02 +17 11 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.222+02 +18 11 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.235+02 +19 12 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.236+02 +20 12 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.237+02 +21 13 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.238+02 +22 13 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.238+02 +23 14 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.239+02 +24 14 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.239+02 +25 15 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.24+02 +26 15 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.24+02 +27 16 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.241+02 +28 16 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.241+02 +29 17 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.245+02 +30 17 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.246+02 +31 18 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.247+02 +32 18 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.247+02 +33 19 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.248+02 +34 19 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.248+02 +35 20 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.249+02 +36 20 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.249+02 +37 21 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.25+02 +38 21 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.25+02 +39 22 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.251+02 +40 22 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.251+02 +41 23 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.252+02 +42 23 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.252+02 +43 24 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.253+02 +44 24 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.253+02 +45 25 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.254+02 +46 25 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.254+02 +47 26 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.255+02 +48 26 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.255+02 +49 27 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.256+02 +50 27 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.256+02 +51 28 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.257+02 +52 28 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.257+02 +53 29 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.258+02 +54 29 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.258+02 +55 30 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.259+02 +56 30 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.259+02 +57 31 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.26+02 +58 31 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.26+02 +59 32 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.261+02 +60 32 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.261+02 +61 33 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.261+02 +62 33 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.262+02 +63 34 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.262+02 +64 34 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.263+02 +65 35 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.263+02 +66 35 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.264+02 +67 36 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.264+02 +68 36 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.265+02 +69 37 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.265+02 +70 37 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.265+02 +71 38 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.266+02 +72 38 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.266+02 +73 39 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.267+02 +74 39 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.268+02 +75 40 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.268+02 +76 40 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.269+02 +77 41 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.269+02 +78 41 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.27+02 +79 42 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.27+02 +80 42 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.271+02 +81 43 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.271+02 +82 43 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.271+02 +83 44 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.272+02 +84 44 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.272+02 +85 45 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.273+02 +86 45 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.274+02 +87 46 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.275+02 +88 46 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.275+02 +89 47 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.275+02 +90 47 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.276+02 +91 48 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.276+02 +92 48 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.277+02 +93 49 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.277+02 +94 49 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.278+02 +95 50 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.278+02 +96 50 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.278+02 +97 51 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.279+02 +98 51 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.28+02 +99 52 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.28+02 +100 52 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.281+02 +101 53 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.281+02 +102 53 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.282+02 +103 54 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.282+02 +104 54 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.283+02 +105 55 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.283+02 +106 55 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.284+02 +107 56 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.284+02 +108 56 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.285+02 +109 57 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.285+02 +110 57 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.286+02 +111 58 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.286+02 +112 58 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.287+02 +113 59 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.287+02 +114 59 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.288+02 +115 60 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.288+02 +116 60 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.289+02 +117 61 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.29+02 +118 61 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.29+02 +119 62 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.291+02 +120 62 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.291+02 +121 63 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.292+02 +122 63 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.292+02 +123 64 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.293+02 +124 64 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.293+02 +125 65 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.294+02 +126 65 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.294+02 +127 66 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.295+02 +128 66 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.295+02 +129 67 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.295+02 +130 67 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.296+02 +131 68 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.296+02 +132 68 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.297+02 +133 69 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.297+02 +134 69 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.298+02 +135 70 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.298+02 +136 70 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.299+02 +137 71 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.299+02 +138 71 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.3+02 +139 72 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.301+02 +140 72 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.301+02 +141 73 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.302+02 +142 73 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.302+02 +143 74 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.303+02 +144 74 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.303+02 +145 75 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.304+02 +146 75 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.304+02 +147 76 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.305+02 +148 76 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.305+02 +149 77 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.306+02 +150 77 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.306+02 +151 78 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.307+02 +152 78 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.307+02 +153 79 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.308+02 +154 79 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.308+02 +155 80 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.309+02 +156 80 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.309+02 +157 81 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.31+02 +158 81 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.31+02 +159 82 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.311+02 +160 82 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.311+02 +161 83 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.312+02 +162 83 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.312+02 +163 84 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.313+02 +164 84 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.314+02 +165 85 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.314+02 +166 85 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.315+02 +167 86 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.315+02 +168 86 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.316+02 +169 87 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.316+02 +170 87 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.317+02 +171 88 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.317+02 +172 88 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.318+02 +173 89 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.319+02 +174 89 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.319+02 +175 90 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.32+02 +176 90 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.32+02 +177 91 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.321+02 +178 91 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.321+02 +179 92 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.322+02 +180 92 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.322+02 +181 93 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.323+02 +182 93 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.323+02 +183 94 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.324+02 +184 94 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.324+02 +185 95 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.325+02 +186 95 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.325+02 +187 96 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.326+02 +188 96 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.326+02 +189 97 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.327+02 +190 97 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.327+02 +191 98 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.327+02 +192 98 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.328+02 +193 99 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.328+02 +194 99 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.329+02 +195 100 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.329+02 +196 100 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.329+02 +197 101 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.33+02 +198 101 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.33+02 +199 102 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.331+02 +200 102 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.331+02 +201 103 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.332+02 +202 103 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.332+02 +203 104 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.333+02 +204 104 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.333+02 +205 105 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.334+02 +206 105 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.334+02 +207 106 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.335+02 +208 106 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.335+02 +209 107 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.336+02 +210 107 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.336+02 +211 108 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.337+02 +212 108 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.337+02 +213 109 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.338+02 +214 109 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.338+02 +215 110 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.339+02 +216 110 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.339+02 +217 111 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.34+02 +218 111 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.34+02 +219 112 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.341+02 +220 112 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.341+02 +221 113 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.342+02 +222 113 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.342+02 +223 114 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.343+02 +224 114 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.343+02 +225 115 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.344+02 +226 115 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.344+02 +227 116 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.345+02 +228 116 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.345+02 +229 117 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.346+02 +230 117 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.346+02 +231 118 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.347+02 +232 118 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.347+02 +233 119 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.348+02 +234 119 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.348+02 +235 120 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.349+02 +236 120 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.349+02 +237 121 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.35+02 +238 121 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.351+02 +239 122 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.351+02 +240 122 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.351+02 +241 123 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.352+02 +242 123 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.352+02 +243 124 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.353+02 +244 124 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.353+02 +245 125 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.354+02 +246 125 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.354+02 +247 126 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.355+02 +248 126 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.355+02 +249 127 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.356+02 +250 127 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.356+02 +251 128 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.357+02 +252 128 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.357+02 +253 129 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.358+02 +254 129 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.358+02 +255 130 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.359+02 +256 130 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.359+02 +257 131 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.36+02 +258 131 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.36+02 +259 132 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.361+02 +260 132 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.361+02 +261 133 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.362+02 +262 133 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.362+02 +263 134 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.363+02 +264 134 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.363+02 +265 135 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.364+02 +266 135 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.365+02 +267 136 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.365+02 +268 136 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.366+02 +269 137 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.366+02 +270 137 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.367+02 +271 138 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.367+02 +272 138 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.368+02 +273 139 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.368+02 +274 139 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.368+02 +275 140 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.369+02 +276 140 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.37+02 +277 141 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.37+02 +278 141 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.371+02 +279 142 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.371+02 +280 142 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.372+02 +281 143 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.373+02 +282 143 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.373+02 +283 144 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.374+02 +284 144 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.374+02 +285 145 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.375+02 +286 145 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.375+02 +287 146 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.375+02 +288 146 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.376+02 +289 147 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.376+02 +290 147 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.377+02 +291 148 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.377+02 +292 148 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.378+02 +293 149 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.378+02 +294 149 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.379+02 +295 150 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.38+02 +296 150 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.38+02 +297 151 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.381+02 +298 151 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.381+02 +299 152 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.382+02 +300 152 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.382+02 +301 153 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.383+02 +302 153 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.383+02 +303 154 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.384+02 +304 154 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.384+02 +305 155 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.385+02 +306 155 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.385+02 +307 156 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.386+02 +308 156 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.386+02 +309 157 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.387+02 +310 157 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.387+02 +311 158 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.388+02 +312 158 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.388+02 +313 159 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.389+02 +314 159 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.389+02 +315 160 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.39+02 +316 160 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.39+02 +317 161 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.391+02 +318 161 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.391+02 +319 162 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.392+02 +320 162 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.392+02 +321 163 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.393+02 +322 163 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.393+02 +323 164 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.394+02 +324 164 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.394+02 +325 165 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.395+02 +326 165 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.395+02 +327 166 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.396+02 +328 166 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.396+02 +329 167 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.397+02 +330 167 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.397+02 +331 168 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.398+02 +332 168 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.398+02 +333 169 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.398+02 +334 169 74 \N \N 11 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.399+02 +335 170 74 \N \N 13 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.399+02 +336 170 75 \N \N 8 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.4+02 +337 171 75 \N \N 9 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.4+02 +338 171 74 \N \N 14 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.4+02 +339 172 75 \N \N 6 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.401+02 +340 172 74 \N \N 10 3 2013-04-12 14:01:43.729885+02 3 2013-04-12 14:01:54.401+02 +341 173 73 \N 243 \N 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:57.144+02 +342 174 73 \N 243 \N 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:57.146+02 +343 175 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.696+02 +344 175 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.697+02 +345 176 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.698+02 +346 176 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.698+02 +347 177 74 \N \N 12 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.699+02 +348 177 75 \N \N 7 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.699+02 +349 178 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.7+02 +350 178 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.701+02 +351 179 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.702+02 +352 179 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.703+02 +353 180 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.703+02 +354 180 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.704+02 +355 181 74 \N \N 12 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.705+02 +356 181 75 \N \N 7 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.705+02 +357 182 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.707+02 +358 182 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.707+02 +359 183 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.708+02 +360 183 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.709+02 +361 184 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.71+02 +362 184 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.71+02 +363 185 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.711+02 +364 185 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.711+02 +365 186 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.712+02 +366 186 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.712+02 +367 187 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.713+02 +368 187 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.713+02 +369 188 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.714+02 +370 188 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.714+02 +371 189 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.715+02 +372 189 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.715+02 +373 190 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.716+02 +374 190 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.716+02 +375 191 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.717+02 +376 191 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.717+02 +377 192 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.718+02 +378 192 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.718+02 +379 193 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.719+02 +380 193 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.719+02 +381 194 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.72+02 +382 194 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.72+02 +383 195 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.721+02 +384 195 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.721+02 +385 196 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.722+02 +386 196 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.722+02 +387 197 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.723+02 +388 197 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.723+02 +389 198 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.724+02 +390 198 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.724+02 +391 199 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.725+02 +392 199 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.726+02 +393 200 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.726+02 +394 200 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.727+02 +395 201 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.728+02 +396 201 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.728+02 +397 202 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.729+02 +398 202 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.729+02 +399 203 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.731+02 +400 203 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.731+02 +401 204 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.732+02 +402 204 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.732+02 +403 205 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.733+02 +404 205 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.733+02 +405 206 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.734+02 +406 206 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.734+02 +407 207 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.735+02 +408 207 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.735+02 +409 208 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.736+02 +410 208 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.736+02 +411 209 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.737+02 +412 209 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.737+02 +413 210 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.738+02 +414 210 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.738+02 +415 211 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.739+02 +416 211 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.739+02 +417 212 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.74+02 +418 212 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.74+02 +419 213 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.741+02 +420 213 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.741+02 +421 214 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.742+02 +422 214 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.742+02 +423 215 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.743+02 +424 215 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.743+02 +425 216 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.744+02 +426 216 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.744+02 +427 217 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.745+02 +428 217 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.745+02 +429 218 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.746+02 +430 218 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.747+02 +431 219 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.747+02 +432 219 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.748+02 +433 220 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.748+02 +434 220 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.748+02 +435 221 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.749+02 +436 221 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.749+02 +437 222 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.75+02 +438 222 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.75+02 +439 223 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.751+02 +440 223 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.751+02 +441 224 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.752+02 +442 224 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.752+02 +443 225 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.753+02 +444 225 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.753+02 +445 226 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.754+02 +446 226 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.754+02 +447 227 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.755+02 +448 227 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.755+02 +449 228 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.756+02 +450 228 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.756+02 +451 229 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.757+02 +452 229 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.757+02 +453 230 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.758+02 +454 230 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.758+02 +455 231 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.759+02 +456 231 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.759+02 +457 232 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.76+02 +458 232 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.76+02 +459 233 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.761+02 +460 233 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.761+02 +461 234 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.762+02 +462 234 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.762+02 +463 235 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.763+02 +464 235 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.763+02 +465 236 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.764+02 +466 236 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.765+02 +467 237 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.765+02 +468 237 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.766+02 +469 238 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.767+02 +470 238 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.767+02 +471 239 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.767+02 +472 239 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.768+02 +473 240 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.769+02 +474 240 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.769+02 +475 241 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.77+02 +476 241 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.77+02 +477 242 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.771+02 +478 242 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.771+02 +479 243 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.772+02 +480 243 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.772+02 +481 244 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.773+02 +482 244 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.773+02 +483 245 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.774+02 +484 245 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.774+02 +485 246 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.775+02 +486 246 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.775+02 +487 247 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.776+02 +488 247 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.776+02 +489 248 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.777+02 +490 248 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.777+02 +491 249 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.778+02 +492 249 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.778+02 +493 250 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.779+02 +494 250 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.779+02 +495 251 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.78+02 +496 251 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.78+02 +497 252 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.781+02 +498 252 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.781+02 +499 253 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.782+02 +500 253 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.782+02 +501 254 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.784+02 +502 254 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.784+02 +503 255 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.785+02 +504 255 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.785+02 +505 256 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.786+02 +506 256 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.786+02 +507 257 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.787+02 +508 257 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.787+02 +509 258 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.788+02 +510 258 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.788+02 +511 259 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.789+02 +512 259 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.789+02 +513 260 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.79+02 +514 260 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.79+02 +515 261 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.791+02 +516 261 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.791+02 +517 262 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.792+02 +518 262 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.792+02 +519 263 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.793+02 +520 263 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.793+02 +521 264 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.794+02 +522 264 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.794+02 +523 265 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.795+02 +524 265 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.795+02 +525 266 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.796+02 +526 266 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.796+02 +527 267 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.797+02 +528 267 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.797+02 +529 268 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.798+02 +530 268 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.798+02 +531 269 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.799+02 +532 269 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.799+02 +533 270 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.8+02 +534 270 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.8+02 +535 271 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.801+02 +536 271 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.801+02 +537 272 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.802+02 +538 272 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.802+02 +539 273 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.803+02 +540 273 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.803+02 +541 274 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.804+02 +542 274 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.804+02 +543 275 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.805+02 +544 275 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.805+02 +545 276 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.806+02 +546 276 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.806+02 +547 277 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.807+02 +548 277 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.807+02 +549 278 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.808+02 +550 278 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.808+02 +551 279 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.809+02 +552 279 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.809+02 +553 280 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.81+02 +554 280 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.81+02 +555 281 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.811+02 +556 281 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.811+02 +557 282 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.812+02 +558 282 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.812+02 +559 283 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.813+02 +560 283 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.813+02 +561 284 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.814+02 +562 284 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.814+02 +563 285 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.815+02 +564 285 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.815+02 +565 286 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.816+02 +566 286 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.816+02 +567 287 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.817+02 +568 287 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.817+02 +569 288 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.818+02 +570 288 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.818+02 +571 289 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.819+02 +572 289 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.819+02 +573 290 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.82+02 +574 290 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.82+02 +575 291 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.821+02 +576 291 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.821+02 +577 292 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.822+02 +578 292 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.822+02 +579 293 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.823+02 +580 293 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.823+02 +581 294 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.824+02 +582 294 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.824+02 +583 295 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.825+02 +584 295 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.825+02 +585 296 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.826+02 +586 296 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.826+02 +587 297 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.827+02 +588 297 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.827+02 +589 298 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.828+02 +590 298 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.828+02 +591 299 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.829+02 +592 299 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.829+02 +593 300 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.83+02 +594 300 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.831+02 +595 301 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.831+02 +596 301 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.832+02 +597 302 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.832+02 +598 302 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.833+02 +599 303 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.833+02 +600 303 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.834+02 +601 304 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.834+02 +602 304 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.835+02 +603 305 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.835+02 +604 305 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.836+02 +605 306 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.836+02 +606 306 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.837+02 +607 307 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.837+02 +608 307 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.838+02 +609 308 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.838+02 +610 308 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.839+02 +611 309 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.839+02 +612 309 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.84+02 +613 310 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.84+02 +614 310 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.841+02 +615 311 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.841+02 +616 311 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.842+02 +617 312 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.842+02 +618 312 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.843+02 +619 313 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.843+02 +620 313 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.844+02 +621 314 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.844+02 +622 314 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.845+02 +623 315 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.845+02 +624 315 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.846+02 +625 316 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.846+02 +626 316 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.847+02 +627 317 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.847+02 +628 317 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.848+02 +629 318 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.848+02 +630 318 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.849+02 +631 319 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.849+02 +632 319 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.85+02 +633 320 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.85+02 +634 320 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.851+02 +635 321 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.851+02 +636 321 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.852+02 +637 322 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.852+02 +638 322 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.853+02 +639 323 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.853+02 +640 323 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.854+02 +641 324 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.855+02 +642 324 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.855+02 +643 325 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.856+02 +644 325 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.856+02 +645 326 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.857+02 +646 326 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.857+02 +647 327 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.858+02 +648 327 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.858+02 +649 328 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.859+02 +650 328 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.859+02 +651 329 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.859+02 +652 329 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.86+02 +653 330 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.86+02 +654 330 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.861+02 +655 331 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.861+02 +656 331 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.862+02 +657 332 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.862+02 +658 332 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.863+02 +659 333 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.863+02 +660 333 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.864+02 +661 334 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.864+02 +662 334 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.865+02 +663 335 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.865+02 +664 335 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.866+02 +665 336 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.866+02 +666 336 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.867+02 +667 337 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.868+02 +668 337 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.868+02 +669 338 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.869+02 +670 338 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.869+02 +671 339 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.87+02 +672 339 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.87+02 +673 340 74 \N \N 11 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.871+02 +674 340 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.871+02 +675 341 75 \N \N 8 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.872+02 +676 341 74 \N \N 13 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.872+02 +677 342 74 \N \N 14 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.873+02 +678 342 75 \N \N 9 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.873+02 +679 343 75 \N \N 6 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.874+02 +680 343 74 \N \N 10 3 2013-04-12 15:05:56.510458+02 3 2013-04-12 15:05:59.874+02 +681 345 76 0.19385735603137066 \N \N 4 2013-04-15 13:21:48.840464+02 4 2013-04-24 14:50:08.135+02 +\. + + +-- +-- Data for Name: sample_properties_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY sample_properties_history (id, samp_id, stpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) FROM stdin; +682 345 76 0.8084392873570323 \N \N 4 2013-04-15 13:21:49.89+02 2013-04-15 14:02:02.746999+02 +683 345 76 0.3461253938730806 \N \N 4 2013-04-15 14:02:03.947+02 2013-04-15 14:04:10.520983+02 +684 345 76 0.9939973703585565 \N \N 4 2013-04-15 14:04:11.669+02 2013-04-15 15:01:43.682747+02 +685 345 76 0.08065234799869359 \N \N 4 2013-04-15 15:01:44.859+02 2013-04-15 15:01:47.907154+02 +686 345 76 0.13826289144344628 \N \N 4 2013-04-15 15:01:49.039+02 2013-04-15 15:28:36.70976+02 +687 345 76 0.43123351596295834 \N \N 4 2013-04-15 15:28:37.818+02 2013-04-15 16:31:18.463742+02 +688 345 76 0.4818275682628155 \N \N 4 2013-04-15 16:31:19.629+02 2013-04-15 16:46:00.956107+02 +689 345 76 0.6657189030665904 \N \N 4 2013-04-15 16:46:02.061+02 2013-04-15 17:03:29.339456+02 +690 345 76 0.2824553793761879 \N \N 4 2013-04-15 17:03:30.431+02 2013-04-16 09:17:46.878329+02 +691 345 76 0.35273699765093625 \N \N 4 2013-04-16 09:17:48.027+02 2013-04-16 11:56:47.575059+02 +692 345 76 0.3123474239837378 \N \N 4 2013-04-16 11:56:48.911+02 2013-04-16 12:03:56.781438+02 +693 345 76 0.9487383088562638 \N \N 4 2013-04-16 12:03:57.901+02 2013-04-16 14:39:08.423314+02 +694 345 76 0.13386995438486338 \N \N 4 2013-04-16 14:39:09.582+02 2013-04-16 14:43:20.568733+02 +695 345 76 0.4664396811276674 \N \N 4 2013-04-16 14:43:21.692+02 2013-04-17 10:06:38.248521+02 +696 345 76 0.5621447991579771 \N \N 4 2013-04-17 10:06:39.432+02 2013-04-24 14:50:07.953406+02 +\. + + +-- +-- Data for Name: sample_relationships_all; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY sample_relationships_all (id, sample_id_parent, relationship_id, sample_id_child, del_id, pers_id_author, registration_timestamp, modification_timestamp) FROM stdin; +1 345 1 347 \N 3 2013-04-15 09:58:22.702187+02 2013-04-15 09:58:23.387+02 +2 345 1 348 \N 3 2013-04-15 09:58:27.586828+02 2013-04-15 09:58:28.22+02 +3 346 1 345 \N 3 2013-04-15 09:58:48.926426+02 2013-04-15 09:58:50.054+02 +\. + + +-- +-- Data for Name: sample_relationships_history; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY sample_relationships_history (id, main_samp_id, relation_type, expe_id, samp_id, data_id, entity_perm_id, pers_id_author, valid_from_timestamp, valid_until_timestamp, space_id) FROM stdin; +2 2 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:47.477+02 \N \N +3 3 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:47.735+02 \N \N +4 2 CONTAINER \N 4 \N 20130412140151638-22 3 2013-04-12 14:01:51.636+02 \N \N +5 4 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.636+02 \N \N +6 4 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.636+02 \N \N +7 2 CONTAINER \N 5 \N 20130412140151651-23 3 2013-04-12 14:01:51.651+02 \N \N +8 5 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.651+02 \N \N +9 5 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.651+02 \N \N +10 2 CONTAINER \N 6 \N 20130412140151661-24 3 2013-04-12 14:01:51.661+02 \N \N +11 6 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.661+02 \N \N +12 6 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.661+02 \N \N +13 2 CONTAINER \N 7 \N 20130412140151672-25 3 2013-04-12 14:01:51.672+02 \N \N +14 7 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.672+02 \N \N +15 7 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.672+02 \N \N +16 2 CONTAINER \N 8 \N 20130412140151683-26 3 2013-04-12 14:01:51.682+02 \N \N +17 8 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.682+02 \N \N +18 8 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.682+02 \N \N +19 2 CONTAINER \N 9 \N 20130412140151750-27 3 2013-04-12 14:01:51.749+02 \N \N +20 9 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.749+02 \N \N +21 9 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.749+02 \N \N +22 2 CONTAINER \N 10 \N 20130412140151792-28 3 2013-04-12 14:01:51.791+02 \N \N +23 10 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.791+02 \N \N +24 10 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.791+02 \N \N +25 2 CONTAINER \N 11 \N 20130412140151848-29 3 2013-04-12 14:01:51.848+02 \N \N +26 11 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.848+02 \N \N +27 11 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.848+02 \N \N +28 2 CONTAINER \N 12 \N 20130412140151886-30 3 2013-04-12 14:01:51.885+02 \N \N +29 12 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.885+02 \N \N +30 12 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.885+02 \N \N +31 2 CONTAINER \N 13 \N 20130412140151918-31 3 2013-04-12 14:01:51.917+02 \N \N +32 13 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.917+02 \N \N +33 13 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.917+02 \N \N +34 2 CONTAINER \N 14 \N 20130412140151949-32 3 2013-04-12 14:01:51.948+02 \N \N +35 14 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.948+02 \N \N +36 14 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.948+02 \N \N +37 2 CONTAINER \N 15 \N 20130412140151970-33 3 2013-04-12 14:01:51.969+02 \N \N +38 15 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.969+02 \N \N +39 15 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.969+02 \N \N +40 2 CONTAINER \N 16 \N 20130412140151987-34 3 2013-04-12 14:01:51.986+02 \N \N +41 16 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.986+02 \N \N +42 16 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.986+02 \N \N +43 2 CONTAINER \N 17 \N 20130412140151999-35 3 2013-04-12 14:01:51.998+02 \N \N +44 17 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:51.998+02 \N \N +45 17 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:51.998+02 \N \N +46 2 CONTAINER \N 18 \N 20130412140152009-36 3 2013-04-12 14:01:52.009+02 \N \N +47 18 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.009+02 \N \N +48 18 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.009+02 \N \N +49 2 CONTAINER \N 19 \N 20130412140152021-37 3 2013-04-12 14:01:52.02+02 \N \N +50 19 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.02+02 \N \N +51 19 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.02+02 \N \N +52 2 CONTAINER \N 20 \N 20130412140152031-38 3 2013-04-12 14:01:52.03+02 \N \N +53 20 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.03+02 \N \N +54 20 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.03+02 \N \N +55 2 CONTAINER \N 21 \N 20130412140152041-39 3 2013-04-12 14:01:52.04+02 \N \N +56 21 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.04+02 \N \N +57 21 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.04+02 \N \N +58 2 CONTAINER \N 22 \N 20130412140152052-40 3 2013-04-12 14:01:52.051+02 \N \N +59 22 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.051+02 \N \N +60 22 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.051+02 \N \N +61 2 CONTAINER \N 23 \N 20130412140152084-41 3 2013-04-12 14:01:52.083+02 \N \N +62 23 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.083+02 \N \N +63 23 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.083+02 \N \N +64 2 CONTAINER \N 24 \N 20130412140152095-42 3 2013-04-12 14:01:52.094+02 \N \N +65 24 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.094+02 \N \N +66 24 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.094+02 \N \N +67 2 CONTAINER \N 25 \N 20130412140152106-43 3 2013-04-12 14:01:52.106+02 \N \N +68 25 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.106+02 \N \N +69 25 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.106+02 \N \N +70 2 CONTAINER \N 26 \N 20130412140152117-44 3 2013-04-12 14:01:52.116+02 \N \N +71 26 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.116+02 \N \N +72 26 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.116+02 \N \N +73 2 CONTAINER \N 27 \N 20130412140152127-45 3 2013-04-12 14:01:52.127+02 \N \N +74 27 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.127+02 \N \N +75 27 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.127+02 \N \N +76 2 CONTAINER \N 28 \N 20130412140152138-46 3 2013-04-12 14:01:52.137+02 \N \N +77 28 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.137+02 \N \N +78 28 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.137+02 \N \N +79 2 CONTAINER \N 29 \N 20130412140152148-47 3 2013-04-12 14:01:52.147+02 \N \N +80 29 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.147+02 \N \N +81 29 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.147+02 \N \N +82 2 CONTAINER \N 30 \N 20130412140152159-48 3 2013-04-12 14:01:52.158+02 \N \N +83 30 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.158+02 \N \N +84 30 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.158+02 \N \N +85 2 CONTAINER \N 31 \N 20130412140152169-49 3 2013-04-12 14:01:52.169+02 \N \N +86 31 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.169+02 \N \N +87 31 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.169+02 \N \N +88 2 CONTAINER \N 32 \N 20130412140152180-50 3 2013-04-12 14:01:52.179+02 \N \N +89 32 CONTAINED \N 2 \N 20130412140147735-20 3 2013-04-12 14:01:52.179+02 \N \N +90 32 OWNED 2 \N \N 20130412105232616-2 3 2013-04-12 14:01:52.179+02 \N \N +91 2 CONTAINER \N 33 \N 20130412140152190-51 3 2013-04-12 14:01:52.19+02 \N \N +92 33 CONTAINED \N 2 \N 20130412140147735-20 3 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OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.543+02 \N \N +988 174 CONTAINER \N 331 \N 20130412150559554-363 3 2013-04-12 15:05:59.554+02 \N \N +989 331 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.554+02 \N \N +990 331 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.554+02 \N \N +991 174 CONTAINER \N 332 \N 20130412150559565-364 3 2013-04-12 15:05:59.564+02 \N \N +992 332 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.564+02 \N \N +993 332 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.564+02 \N \N +994 174 CONTAINER \N 333 \N 20130412150559575-365 3 2013-04-12 15:05:59.575+02 \N \N +995 333 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.575+02 \N \N +996 333 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.575+02 \N \N +997 174 CONTAINER \N 334 \N 20130412150559586-366 3 2013-04-12 15:05:59.585+02 \N \N +998 334 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.585+02 \N \N +999 334 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.585+02 \N \N +1000 174 CONTAINER \N 335 \N 20130412150559596-367 3 2013-04-12 15:05:59.596+02 \N \N +1001 335 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.596+02 \N \N +1002 335 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.596+02 \N \N +1003 174 CONTAINER \N 336 \N 20130412150559607-368 3 2013-04-12 15:05:59.606+02 \N \N +1004 336 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.606+02 \N \N +1005 336 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.606+02 \N \N +1006 174 CONTAINER \N 337 \N 20130412150559617-369 3 2013-04-12 15:05:59.617+02 \N \N +1007 337 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.617+02 \N \N +1008 337 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.617+02 \N \N +1009 174 CONTAINER \N 338 \N 20130412150559628-370 3 2013-04-12 15:05:59.627+02 \N \N +1010 338 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.627+02 \N \N +1011 338 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.627+02 \N \N +1012 174 CONTAINER \N 339 \N 20130412150559639-371 3 2013-04-12 15:05:59.638+02 \N \N +1013 339 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.638+02 \N \N +1014 339 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.638+02 \N \N +1015 174 CONTAINER \N 340 \N 20130412150559649-372 3 2013-04-12 15:05:59.649+02 \N \N +1016 340 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.649+02 \N \N +1017 340 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.649+02 \N \N +1018 174 CONTAINER \N 341 \N 20130412150559659-373 3 2013-04-12 15:05:59.659+02 \N \N +1019 341 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.659+02 \N \N +1020 341 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.659+02 \N \N +1021 174 CONTAINER \N 342 \N 20130412150559671-374 3 2013-04-12 15:05:59.67+02 \N \N +1022 342 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.67+02 \N \N +1023 342 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.67+02 \N \N +1024 174 CONTAINER \N 343 \N 20130412150559681-375 3 2013-04-12 15:05:59.681+02 \N \N +1025 343 CONTAINED \N 174 \N 20130412150557128-206 3 2013-04-12 15:05:59.681+02 \N \N +1026 343 OWNED 3 \N \N 20130412150049446-204 3 2013-04-12 15:05:59.681+02 \N \N +1027 173 OWNER \N \N 8 20130412151710024-379 2 2013-04-12 15:20:49.452+02 \N \N +1028 173 OWNER \N \N 9 20130412152036861-380 2 2013-04-12 15:20:49.869+02 \N \N +1029 173 OWNER \N \N 10 20130412152038345-381 2 2013-04-12 15:20:50.204+02 \N \N +1031 2 OWNER \N \N 12 20130412153118625-384 2 2013-04-12 15:31:23.741+02 \N \N +1032 2 OWNER \N \N 13 20130412153119864-385 2 2013-04-12 15:31:24.338+02 \N \N +1033 2 OWNER \N \N 17 20130412153659994-391 2 2013-04-12 15:37:03.109+02 \N \N +1040 345 OWNED 6 \N \N 20130415091745099-401 3 2013-04-15 09:19:23.381+02 \N \N +1041 346 OWNED 6 \N \N 20130415091745099-401 3 2013-04-15 09:57:48.361+02 \N \N +1042 347 OWNED 6 \N \N 20130415091745099-401 3 2013-04-15 09:58:23.219+02 \N \N +1043 345 PARENT \N 347 \N 20130415095823341-405 3 2013-04-15 09:58:23.387+02 \N \N +1044 347 CHILD \N 345 \N 20130415091923485-402 3 2013-04-15 09:58:23.387+02 \N \N +1045 348 OWNED 6 \N \N 20130415091745099-401 3 2013-04-15 09:58:28.095+02 \N \N +1046 345 PARENT \N 348 \N 20130415095828217-406 3 2013-04-15 09:58:28.22+02 \N \N +1047 348 CHILD \N 345 \N 20130415091923485-402 3 2013-04-15 09:58:28.22+02 \N \N +1048 346 PARENT \N 345 \N 20130415091923485-402 3 2013-04-15 09:58:50.054+02 \N \N +1049 345 CHILD \N 346 \N 20130415095748527-404 3 2013-04-15 09:58:50.054+02 \N \N +1050 345 OWNER \N \N 21 20130415093804724-403 3 2013-04-15 10:12:40.811+02 \N \N +1055 350 OWNED 5 \N \N 20130412155138019-396 3 2013-04-17 09:49:11.832+02 \N \N +1056 350 OWNER \N \N 28 20130417094936021-428 2 2013-04-17 09:49:41.525+02 \N \N +1057 350 OWNER \N \N 29 20130417094934693-427 2 2013-04-17 09:49:42.056+02 \N \N +1058 350 OWNER \N \N 30 20130417094937144-429 2 2013-04-17 09:49:42.458+02 \N \N +1059 351 OWNED \N \N \N TEST 3 2013-04-24 13:46:57.44+02 \N 3 +1060 351 CONTAINER \N 352 \N 20130424134721644-434 3 2013-04-24 13:47:21.633+02 \N \N +1061 352 CONTAINED \N 351 \N 20130424134657597-433 3 2013-04-24 13:47:21.633+02 \N \N +1062 352 OWNED \N \N \N TEST 3 2013-04-24 13:47:21.633+02 \N 3 +1063 351 CONTAINER \N 353 \N 20130424134742549-435 3 2013-04-24 13:47:42.541+02 \N \N +1064 353 CONTAINED \N 351 \N 20130424134657597-433 3 2013-04-24 13:47:42.541+02 \N \N +1065 353 OWNED \N \N \N TEST 3 2013-04-24 13:47:42.541+02 \N 3 +\. + + +-- +-- Data for Name: sample_type_property_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY sample_type_property_types (id, saty_id, prty_id, is_mandatory, is_managed_internally, pers_id_registerer, registration_timestamp, is_displayed, ordinal, section, script_id, is_shown_edit, show_raw_value) FROM stdin; +1 2 74 f f 1 2013-04-12 10:04:56.658885+02 t 2 \N \N f f +2 2 79 f f 1 2013-04-12 10:04:56.658885+02 t 6 \N \N f f +3 2 27 f f 1 2013-04-12 10:04:56.658885+02 t 8 \N \N f f +4 2 31 f f 1 2013-04-12 10:04:56.658885+02 t 9 \N \N f f +5 2 80 f f 1 2013-04-12 10:04:56.658885+02 t 10 \N \N f f +6 2 73 f f 1 2013-04-12 10:04:56.658885+02 t 11 \N 1 f f +7 2 34 f f 1 2013-04-12 10:04:56.658885+02 t 12 \N \N f f +8 2 22 f f 1 2013-04-12 10:04:56.658885+02 t 15 \N \N f f +9 2 37 f f 1 2013-04-12 10:04:56.658885+02 t 18 \N \N f f +10 2 38 f f 1 2013-04-12 10:04:56.658885+02 t 19 \N \N f f +11 2 19 f f 1 2013-04-12 10:04:56.658885+02 t 20 \N \N f f +12 2 30 f f 1 2013-04-12 10:04:56.658885+02 t 21 \N \N f f +13 2 45 f f 1 2013-04-12 10:04:56.658885+02 t 22 \N \N f f +14 2 83 f f 1 2013-04-12 10:04:56.658885+02 t 23 \N \N f f +15 2 84 f f 1 2013-04-12 10:04:56.658885+02 t 24 \N \N f f +16 2 85 f f 1 2013-04-12 10:04:56.658885+02 t 25 \N \N f f +17 2 77 f f 1 2013-04-12 10:04:56.658885+02 t 26 \N \N f f +18 2 61 f f 1 2013-04-12 10:04:56.658885+02 t 27 \N \N f f +19 2 12 f f 1 2013-04-12 10:04:56.658885+02 t 28 Clustering \N f f +20 2 20 f f 1 2013-04-12 10:04:56.658885+02 t 29 Clustering \N f f +21 2 21 f f 1 2013-04-12 10:04:56.658885+02 t 30 Clustering \N f f +22 2 11 f f 1 2013-04-12 10:04:56.658885+02 t 31 Clustering \N f f +23 2 78 f f 1 2013-04-12 10:04:56.658885+02 t 33 \N \N f f +24 2 4 f f 1 2013-04-12 10:04:56.658885+02 t 35 \N \N f f +25 2 59 f f 1 2013-04-12 10:04:56.658885+02 t 36 \N \N f f +26 3 14 f f 1 2013-04-12 10:04:56.658885+02 t 21 \N \N f f +27 3 59 f f 1 2013-04-12 10:04:56.658885+02 t 24 \N \N f f +28 4 29 f f 1 2013-04-12 10:04:56.658885+02 t 2 \N \N f f +29 4 43 f f 1 2013-04-12 10:04:56.658885+02 t 3 \N \N f f +30 4 66 f f 1 2013-04-12 10:04:56.658885+02 t 4 \N \N f f +31 4 81 f f 1 2013-04-12 10:04:56.658885+02 t 5 \N \N f f +32 4 35 f f 1 2013-04-12 10:04:56.658885+02 t 8 \N \N f f +33 4 36 f f 1 2013-04-12 10:04:56.658885+02 t 9 \N \N f f +34 4 49 f f 1 2013-04-12 10:04:56.658885+02 t 10 \N \N f f +35 4 2 f f 1 2013-04-12 10:04:56.658885+02 t 11 QC Data \N f f +36 4 33 f f 1 2013-04-12 10:04:56.658885+02 t 12 QC Data \N f f +37 4 56 f f 1 2013-04-12 10:04:56.658885+02 t 13 QC Data \N f f +38 4 16 f f 1 2013-04-12 10:04:56.658885+02 t 14 QC Data \N f f +39 4 24 f f 1 2013-04-12 10:04:56.658885+02 t 15 QC Data \N f f +40 4 48 f f 1 2013-04-12 10:04:56.658885+02 t 16 QC Data \N f f +41 4 46 f f 1 2013-04-12 10:04:56.658885+02 t 17 QC Data \N f f +42 4 71 f f 1 2013-04-12 10:04:56.658885+02 t 18 QC Data \N f f +43 4 44 f f 1 2013-04-12 10:04:56.658885+02 t 19 \N \N f f +44 4 23 f f 1 2013-04-12 10:04:56.658885+02 t 20 \N \N f f +45 4 39 f f 1 2013-04-12 10:04:56.658885+02 t 21 \N \N f f +46 4 59 f f 1 2013-04-12 10:04:56.658885+02 t 34 \N \N f f +47 5 29 f f 1 2013-04-12 10:04:56.658885+02 t 2 \N \N f f +48 5 66 f f 1 2013-04-12 10:04:56.658885+02 t 3 \N \N f f +49 5 25 f f 1 2013-04-12 10:04:56.658885+02 t 4 \N \N f f +50 5 72 f f 1 2013-04-12 10:04:56.658885+02 t 5 \N \N f f +51 5 2 f f 1 2013-04-12 10:04:56.658885+02 t 6 QC Data \N f f +52 5 32 f f 1 2013-04-12 10:04:56.658885+02 t 7 QC Data \N f f +53 5 56 f f 1 2013-04-12 10:04:56.658885+02 t 8 QC Data \N f f +54 5 13 f f 1 2013-04-12 10:04:56.658885+02 t 9 QC Data \N f f +55 5 26 f f 1 2013-04-12 10:04:56.658885+02 t 10 QC Data \N f f +56 5 39 f f 1 2013-04-12 10:04:56.658885+02 t 11 \N \N f f +57 5 59 f f 1 2013-04-12 10:04:56.658885+02 t 12 \N \N f f +58 6 7 t f 1 2013-04-12 10:04:56.658885+02 t 2 \N \N f f +59 6 17 t f 1 2013-04-12 10:04:56.658885+02 t 3 \N \N f f +60 6 18 t f 1 2013-04-12 10:04:56.658885+02 t 4 \N \N f f +61 6 69 t f 1 2013-04-12 10:04:56.658885+02 t 5 \N \N f f +62 6 70 t f 1 2013-04-12 10:04:56.658885+02 t 6 \N \N f f +63 6 57 t f 1 2013-04-12 10:04:56.658885+02 t 8 \N \N f f +64 6 75 t f 1 2013-04-12 10:04:56.658885+02 t 22 \N \N f f +65 6 59 f f 1 2013-04-12 10:04:56.658885+02 t 23 \N \N f f +66 7 29 f f 1 2013-04-12 10:04:56.658885+02 t 2 \N \N f f +67 7 15 f f 1 2013-04-12 10:04:56.658885+02 t 5 \N \N f f +68 7 66 f f 1 2013-04-12 10:04:56.658885+02 t 9 \N \N f f +69 7 44 f f 1 2013-04-12 10:04:56.658885+02 t 10 \N \N f f +70 7 47 f f 1 2013-04-12 10:04:56.658885+02 t 11 \N \N f f +71 7 59 f f 1 2013-04-12 10:04:56.658885+02 t 14 \N \N f f +72 10 97 f f 1 2013-04-12 10:05:46.102969+02 t 2 \N \N f f +73 11 96 t f 1 2013-04-12 10:05:46.102969+02 t 2 \N \N f f +74 12 103 f f 1 2013-04-12 10:05:46.102969+02 t 2 \N \N f f +75 12 98 f f 1 2013-04-12 10:05:46.102969+02 t 3 \N \N f f +76 1 1 f f 3 2013-04-15 11:19:18.586725+02 t 1 \N \N t f +\. + + +-- +-- Data for Name: sample_types; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY sample_types (id, code, description, dbin_id, is_listable, generated_from_depth, part_of_depth, modification_timestamp, is_auto_generated_code, generated_code_prefix, is_subcode_unique, inherit_properties, validation_script_id, show_parent_metadata) FROM stdin; +2 ILLUMINA_FLOW_CELL Container of ILLUMINA_FLOW_LANES\\ Can be created automatically by a drop box and the properties can be filled from the RunInfo.xml and runParameters.xml files 1 t 0 0 2013-04-12 10:04:56.658885+02 f FLOWCELL- f f \N f +3 ILLUMINA_FLOW_LANE Child of LIBRARY or POOL 1 t 1 1 2013-04-12 10:04:56.658885+02 f FLOWLANE- f f \N t +4 LIBRARY Child of RAW and potential parent of POOL 1 t 1 0 2013-04-12 10:04:56.658885+02 t BSSE-QGF-LIBRARY- f f \N t +5 LIBRARY_POOL Child of several LIBRARY samples, used for multiplexing 1 t 1 0 2013-04-12 10:04:56.658885+02 t BSSE-QGF-POOL- f f \N t +6 MASTER_SAMPLE Sample Type holding Master Data and a parent to RAW 1 t 0 0 2013-04-12 10:04:56.658885+02 t BSSE-QGF-MASTER- f f \N f +7 RAW_SAMPLE Child of MASTER 1 t 1 0 2013-04-12 10:04:56.658885+02 t BSSE-QGF-RAW- f f \N t +8 MS_INJECTION injection of a biological sample into a MS 1 t 0 0 2013-04-12 10:05:45.583358+02 f S f f \N f +9 SEARCH pointer to an MS_INJECTION sample used as placeholder for searches 1 t 0 0 2013-04-12 10:05:45.583358+02 f S f f \N f +10 CONTROL_WELL \N 1 f 0 0 2013-04-12 10:05:46.102969+02 f C f f \N f +11 PLATE Cell Plate 1 t 0 0 2013-04-12 10:05:46.102969+02 f S f f \N f +12 SIRNA_WELL \N 1 f 0 0 2013-04-12 10:05:46.102969+02 f O f f \N f +13 MICROSCOPY_IMG A sample that shows microscopy images 1 t 1 0 2013-04-12 10:49:40.39914+02 f S f f \N f +1 UNKNOWN Unknown 1 t 1 1 2013-04-12 10:04:52.629266+02 f S f f \N f +\. + + +-- +-- Data for Name: samples_all; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY samples_all (id, perm_id, code, expe_id, saty_id, registration_timestamp, modification_timestamp, pers_id_registerer, del_id, orig_del, dbin_id, space_id, samp_id_part_of, pers_id_modifier, code_unique_check, subcode_unique_check, version) FROM stdin; +4 20130412140151638-22 A1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.636+02 3 \N \N \N 2 2 3 A1,2,2,-1 \N 0 +5 20130412140151651-23 A2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.651+02 3 \N \N \N 2 2 3 A2,2,2,-1 \N 0 +6 20130412140151661-24 A3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.661+02 3 \N \N \N 2 2 3 A3,2,2,-1 \N 0 +7 20130412140151672-25 A4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.672+02 3 \N \N \N 2 2 3 A4,2,2,-1 \N 0 +8 20130412140151683-26 A5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.682+02 3 \N \N \N 2 2 3 A5,2,2,-1 \N 0 +9 20130412140151750-27 A6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.749+02 3 \N \N \N 2 2 3 A6,2,2,-1 \N 0 +10 20130412140151792-28 A7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.791+02 3 \N \N \N 2 2 3 A7,2,2,-1 \N 0 +11 20130412140151848-29 A8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.848+02 3 \N \N \N 2 2 3 A8,2,2,-1 \N 0 +12 20130412140151886-30 A9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.885+02 3 \N \N \N 2 2 3 A9,2,2,-1 \N 0 +13 20130412140151918-31 A10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.917+02 3 \N \N \N 2 2 3 A10,2,2,-1 \N 0 +14 20130412140151949-32 A11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.948+02 3 \N \N \N 2 2 3 A11,2,2,-1 \N 0 +15 20130412140151970-33 A12 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.969+02 3 \N \N \N 2 2 3 A12,2,2,-1 \N 0 +16 20130412140151987-34 B1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.986+02 3 \N \N \N 2 2 3 B1,2,2,-1 \N 0 +17 20130412140151999-35 B2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:51.998+02 3 \N \N \N 2 2 3 B2,2,2,-1 \N 0 +18 20130412140152009-36 B3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.009+02 3 \N \N \N 2 2 3 B3,2,2,-1 \N 0 +19 20130412140152021-37 B4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.02+02 3 \N \N \N 2 2 3 B4,2,2,-1 \N 0 +20 20130412140152031-38 B5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.03+02 3 \N \N \N 2 2 3 B5,2,2,-1 \N 0 +21 20130412140152041-39 B6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.04+02 3 \N \N \N 2 2 3 B6,2,2,-1 \N 0 +22 20130412140152052-40 B7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.051+02 3 \N \N \N 2 2 3 B7,2,2,-1 \N 0 +23 20130412140152084-41 B8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.083+02 3 \N \N \N 2 2 3 B8,2,2,-1 \N 0 +24 20130412140152095-42 B9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.094+02 3 \N \N \N 2 2 3 B9,2,2,-1 \N 0 +25 20130412140152106-43 B10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.106+02 3 \N \N \N 2 2 3 B10,2,2,-1 \N 0 +26 20130412140152117-44 B11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.116+02 3 \N \N \N 2 2 3 B11,2,2,-1 \N 0 +27 20130412140152127-45 C1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.127+02 3 \N \N \N 2 2 3 C1,2,2,-1 \N 0 +28 20130412140152138-46 C2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.137+02 3 \N \N \N 2 2 3 C2,2,2,-1 \N 0 +29 20130412140152148-47 C3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.147+02 3 \N \N \N 2 2 3 C3,2,2,-1 \N 0 +30 20130412140152159-48 C4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.158+02 3 \N \N \N 2 2 3 C4,2,2,-1 \N 0 +31 20130412140152169-49 C5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.169+02 3 \N \N \N 2 2 3 C5,2,2,-1 \N 0 +32 20130412140152180-50 C6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.179+02 3 \N \N \N 2 2 3 C6,2,2,-1 \N 0 +33 20130412140152190-51 C7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.19+02 3 \N \N \N 2 2 3 C7,2,2,-1 \N 0 +34 20130412140152224-52 C8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.224+02 3 \N \N \N 2 2 3 C8,2,2,-1 \N 0 +35 20130412140152236-53 C9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.235+02 3 \N \N \N 2 2 3 C9,2,2,-1 \N 0 +36 20130412140152248-54 C10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.247+02 3 \N \N \N 2 2 3 C10,2,2,-1 \N 0 +37 20130412140152259-55 C11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.258+02 3 \N \N \N 2 2 3 C11,2,2,-1 \N 0 +38 20130412140152270-56 D1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.269+02 3 \N \N \N 2 2 3 D1,2,2,-1 \N 0 +39 20130412140152280-57 D2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.28+02 3 \N \N \N 2 2 3 D2,2,2,-1 \N 0 +40 20130412140152291-58 D3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.291+02 3 \N \N \N 2 2 3 D3,2,2,-1 \N 0 +41 20130412140152303-59 D4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.302+02 3 \N \N \N 2 2 3 D4,2,2,-1 \N 0 +42 20130412140152313-60 D5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.313+02 3 \N \N \N 2 2 3 D5,2,2,-1 \N 0 +43 20130412140152324-61 D6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.324+02 3 \N \N \N 2 2 3 D6,2,2,-1 \N 0 +44 20130412140152334-62 D7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.334+02 3 \N \N \N 2 2 3 D7,2,2,-1 \N 0 +45 20130412140152345-63 D8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.344+02 3 \N \N \N 2 2 3 D8,2,2,-1 \N 0 +46 20130412140152355-64 D9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.355+02 3 \N \N \N 2 2 3 D9,2,2,-1 \N 0 +47 20130412140152365-65 D10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.365+02 3 \N \N \N 2 2 3 D10,2,2,-1 \N 0 +48 20130412140152375-66 D11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.375+02 3 \N \N \N 2 2 3 D11,2,2,-1 \N 0 +49 20130412140152387-67 E1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.386+02 3 \N \N \N 2 2 3 E1,2,2,-1 \N 0 +50 20130412140152420-68 E2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.419+02 3 \N \N \N 2 2 3 E2,2,2,-1 \N 0 +51 20130412140152431-69 E3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.431+02 3 \N \N \N 2 2 3 E3,2,2,-1 \N 0 +52 20130412140152442-70 E4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.441+02 3 \N \N \N 2 2 3 E4,2,2,-1 \N 0 +53 20130412140152470-71 E5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.47+02 3 \N \N \N 2 2 3 E5,2,2,-1 \N 0 +54 20130412140152480-72 E6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.48+02 3 \N \N \N 2 2 3 E6,2,2,-1 \N 0 +55 20130412140152490-73 E7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.49+02 3 \N \N \N 2 2 3 E7,2,2,-1 \N 0 +56 20130412140152501-74 E8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.5+02 3 \N \N \N 2 2 3 E8,2,2,-1 \N 0 +57 20130412140152527-75 E9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.527+02 3 \N \N \N 2 2 3 E9,2,2,-1 \N 0 +58 20130412140152537-76 E10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.537+02 3 \N \N \N 2 2 3 E10,2,2,-1 \N 0 +59 20130412140152548-77 E11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.547+02 3 \N \N \N 2 2 3 E11,2,2,-1 \N 0 +60 20130412140152559-78 F1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.558+02 3 \N \N \N 2 2 3 F1,2,2,-1 \N 0 +61 20130412140152595-79 F2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.594+02 3 \N \N \N 2 2 3 F2,2,2,-1 \N 0 +62 20130412140152606-80 F3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.606+02 3 \N \N \N 2 2 3 F3,2,2,-1 \N 0 +63 20130412140152617-81 F4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.617+02 3 \N \N \N 2 2 3 F4,2,2,-1 \N 0 +64 20130412140152634-82 F5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.633+02 3 \N \N \N 2 2 3 F5,2,2,-1 \N 0 +65 20130412140152645-83 F6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.644+02 3 \N \N \N 2 2 3 F6,2,2,-1 \N 0 +66 20130412140152655-84 F7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.655+02 3 \N \N \N 2 2 3 F7,2,2,-1 \N 0 +67 20130412140152665-85 F8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.665+02 3 \N \N \N 2 2 3 F8,2,2,-1 \N 0 +68 20130412140152675-86 F9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.675+02 3 \N \N \N 2 2 3 F9,2,2,-1 \N 0 +69 20130412140152685-87 F10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.685+02 3 \N \N \N 2 2 3 F10,2,2,-1 \N 0 +70 20130412140152695-88 F11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.695+02 3 \N \N \N 2 2 3 F11,2,2,-1 \N 0 +71 20130412140152706-89 G1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.705+02 3 \N \N \N 2 2 3 G1,2,2,-1 \N 0 +72 20130412140152716-90 G2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.716+02 3 \N \N \N 2 2 3 G2,2,2,-1 \N 0 +73 20130412140152726-91 G3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.726+02 3 \N \N \N 2 2 3 G3,2,2,-1 \N 0 +74 20130412140152738-92 G4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.737+02 3 \N \N \N 2 2 3 G4,2,2,-1 \N 0 +75 20130412140152771-93 G5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.771+02 3 \N \N \N 2 2 3 G5,2,2,-1 \N 0 +76 20130412140152783-94 G6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.782+02 3 \N \N \N 2 2 3 G6,2,2,-1 \N 0 +77 20130412140152794-95 G7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.793+02 3 \N \N \N 2 2 3 G7,2,2,-1 \N 0 +78 20130412140152804-96 G8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.803+02 3 \N \N \N 2 2 3 G8,2,2,-1 \N 0 +79 20130412140152814-97 G9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.814+02 3 \N \N \N 2 2 3 G9,2,2,-1 \N 0 +80 20130412140152825-98 G10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.824+02 3 \N \N \N 2 2 3 G10,2,2,-1 \N 0 +81 20130412140152835-99 G11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.834+02 3 \N \N \N 2 2 3 G11,2,2,-1 \N 0 +82 20130412140152846-100 H1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.845+02 3 \N \N \N 2 2 3 H1,2,2,-1 \N 0 +83 20130412140152921-101 A1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.921+02 3 \N \N \N 2 3 3 A1,3,2,-1 \N 0 +84 20130412140152952-102 A2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.951+02 3 \N \N \N 2 3 3 A2,3,2,-1 \N 0 +85 20130412140152963-103 A3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.962+02 3 \N \N \N 2 3 3 A3,3,2,-1 \N 0 +86 20130412140152976-104 A4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.975+02 3 \N \N \N 2 3 3 A4,3,2,-1 \N 0 +87 20130412140152987-105 A5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.986+02 3 \N \N \N 2 3 3 A5,3,2,-1 \N 0 +88 20130412140152997-106 A6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:52.997+02 3 \N \N \N 2 3 3 A6,3,2,-1 \N 0 +89 20130412140153007-107 A7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.007+02 3 \N \N \N 2 3 3 A7,3,2,-1 \N 0 +90 20130412140153018-108 A8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.017+02 3 \N \N \N 2 3 3 A8,3,2,-1 \N 0 +91 20130412140153040-109 A9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.039+02 3 \N \N \N 2 3 3 A9,3,2,-1 \N 0 +92 20130412140153050-110 A10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.05+02 3 \N \N \N 2 3 3 A10,3,2,-1 \N 0 +93 20130412140153061-111 A11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.06+02 3 \N \N \N 2 3 3 A11,3,2,-1 \N 0 +94 20130412140153071-112 A12 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.07+02 3 \N \N \N 2 3 3 A12,3,2,-1 \N 0 +95 20130412140153081-113 B1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.081+02 3 \N \N \N 2 3 3 B1,3,2,-1 \N 0 +96 20130412140153091-114 B2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.091+02 3 \N \N \N 2 3 3 B2,3,2,-1 \N 0 +97 20130412140153101-115 B3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.101+02 3 \N \N \N 2 3 3 B3,3,2,-1 \N 0 +98 20130412140153111-116 B4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.111+02 3 \N \N \N 2 3 3 B4,3,2,-1 \N 0 +99 20130412140153130-117 B5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.129+02 3 \N \N \N 2 3 3 B5,3,2,-1 \N 0 +100 20130412140153142-118 B6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.142+02 3 \N \N \N 2 3 3 B6,3,2,-1 \N 0 +101 20130412140153153-119 B7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.152+02 3 \N \N \N 2 3 3 B7,3,2,-1 \N 0 +102 20130412140153169-120 B8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.169+02 3 \N \N \N 2 3 3 B8,3,2,-1 \N 0 +103 20130412140153182-121 B9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.181+02 3 \N \N \N 2 3 3 B9,3,2,-1 \N 0 +104 20130412140153192-122 B10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.192+02 3 \N \N \N 2 3 3 B10,3,2,-1 \N 0 +105 20130412140153202-123 B11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.202+02 3 \N \N \N 2 3 3 B11,3,2,-1 \N 0 +106 20130412140153212-124 C1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.212+02 3 \N \N \N 2 3 3 C1,3,2,-1 \N 0 +107 20130412140153222-125 C2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.222+02 3 \N \N \N 2 3 3 C2,3,2,-1 \N 0 +108 20130412140153232-126 C3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.232+02 3 \N \N \N 2 3 3 C3,3,2,-1 \N 0 +109 20130412140153243-127 C4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.242+02 3 \N \N \N 2 3 3 C4,3,2,-1 \N 0 +110 20130412140153253-128 C5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.253+02 3 \N \N \N 2 3 3 C5,3,2,-1 \N 0 +111 20130412140153263-129 C6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.263+02 3 \N \N \N 2 3 3 C6,3,2,-1 \N 0 +112 20130412140153275-130 C7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.275+02 3 \N \N \N 2 3 3 C7,3,2,-1 \N 0 +113 20130412140153296-131 C8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.296+02 3 \N \N \N 2 3 3 C8,3,2,-1 \N 0 +114 20130412140153308-132 C9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.307+02 3 \N \N \N 2 3 3 C9,3,2,-1 \N 0 +115 20130412140153319-133 C10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.319+02 3 \N \N \N 2 3 3 C10,3,2,-1 \N 0 +116 20130412140153329-134 C11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.329+02 3 \N \N \N 2 3 3 C11,3,2,-1 \N 0 +117 20130412140153360-135 D1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.36+02 3 \N \N \N 2 3 3 D1,3,2,-1 \N 0 +118 20130412140153371-136 D2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.371+02 3 \N \N \N 2 3 3 D2,3,2,-1 \N 0 +119 20130412140153382-137 D3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.382+02 3 \N \N \N 2 3 3 D3,3,2,-1 \N 0 +120 20130412140153394-138 D4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.393+02 3 \N \N \N 2 3 3 D4,3,2,-1 \N 0 +121 20130412140153405-139 D5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.404+02 3 \N \N \N 2 3 3 D5,3,2,-1 \N 0 +122 20130412140153450-140 D6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.449+02 3 \N \N \N 2 3 3 D6,3,2,-1 \N 0 +123 20130412140153462-141 D7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.462+02 3 \N \N \N 2 3 3 D7,3,2,-1 \N 0 +124 20130412140153472-142 D8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.472+02 3 \N \N \N 2 3 3 D8,3,2,-1 \N 0 +125 20130412140153483-143 D9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.482+02 3 \N \N \N 2 3 3 D9,3,2,-1 \N 0 +126 20130412140153493-144 D10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.492+02 3 \N \N \N 2 3 3 D10,3,2,-1 \N 0 +127 20130412140153518-145 D11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.517+02 3 \N \N \N 2 3 3 D11,3,2,-1 \N 0 +128 20130412140153544-146 E1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.544+02 3 \N \N \N 2 3 3 E1,3,2,-1 \N 0 +129 20130412140153556-147 E2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.555+02 3 \N \N \N 2 3 3 E2,3,2,-1 \N 0 +130 20130412140153567-148 E3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.566+02 3 \N \N \N 2 3 3 E3,3,2,-1 \N 0 +131 20130412140153577-149 E4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.577+02 3 \N \N \N 2 3 3 E4,3,2,-1 \N 0 +132 20130412140153588-150 E5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.587+02 3 \N \N \N 2 3 3 E5,3,2,-1 \N 0 +133 20130412140153600-151 E6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.599+02 3 \N \N \N 2 3 3 E6,3,2,-1 \N 0 +134 20130412140153640-152 E7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.64+02 3 \N \N \N 2 3 3 E7,3,2,-1 \N 0 +135 20130412140153652-153 E8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.651+02 3 \N \N \N 2 3 3 E8,3,2,-1 \N 0 +136 20130412140153664-154 E9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.664+02 3 \N \N \N 2 3 3 E9,3,2,-1 \N 0 +137 20130412140153695-155 E10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.695+02 3 \N \N \N 2 3 3 E10,3,2,-1 \N 0 +138 20130412140153716-156 E11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.715+02 3 \N \N \N 2 3 3 E11,3,2,-1 \N 0 +139 20130412140153732-157 F1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.731+02 3 \N \N \N 2 3 3 F1,3,2,-1 \N 0 +140 20130412140153745-158 F2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.744+02 3 \N \N \N 2 3 3 F2,3,2,-1 \N 0 +141 20130412140153762-159 F3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.762+02 3 \N \N \N 2 3 3 F3,3,2,-1 \N 0 +142 20130412140153779-160 F4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.779+02 3 \N \N \N 2 3 3 F4,3,2,-1 \N 0 +143 20130412140153789-161 F5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.789+02 3 \N \N \N 2 3 3 F5,3,2,-1 \N 0 +144 20130412140153799-162 F6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.799+02 3 \N \N \N 2 3 3 F6,3,2,-1 \N 0 +145 20130412140153809-163 F7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.809+02 3 \N \N \N 2 3 3 F7,3,2,-1 \N 0 +146 20130412140153821-164 F8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.82+02 3 \N \N \N 2 3 3 F8,3,2,-1 \N 0 +147 20130412140153834-165 F9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.833+02 3 \N \N \N 2 3 3 F9,3,2,-1 \N 0 +148 20130412140153847-166 F10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.846+02 3 \N \N \N 2 3 3 F10,3,2,-1 \N 0 +149 20130412140153858-167 F11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.858+02 3 \N \N \N 2 3 3 F11,3,2,-1 \N 0 +150 20130412140153869-168 G1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.869+02 3 \N \N \N 2 3 3 G1,3,2,-1 \N 0 +151 20130412140153881-169 G2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.88+02 3 \N \N \N 2 3 3 G2,3,2,-1 \N 0 +152 20130412140153911-170 G3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.91+02 3 \N \N \N 2 3 3 G3,3,2,-1 \N 0 +153 20130412140153925-171 G4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.925+02 3 \N \N \N 2 3 3 G4,3,2,-1 \N 0 +154 20130412140153936-172 G5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.935+02 3 \N \N \N 2 3 3 G5,3,2,-1 \N 0 +155 20130412140153947-173 G6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.947+02 3 \N \N \N 2 3 3 G6,3,2,-1 \N 0 +156 20130412140153997-174 G7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:53.997+02 3 \N \N \N 2 3 3 G7,3,2,-1 \N 0 +157 20130412140154008-175 G8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.007+02 3 \N \N \N 2 3 3 G8,3,2,-1 \N 0 +158 20130412140154041-176 G9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.041+02 3 \N \N \N 2 3 3 G9,3,2,-1 \N 0 +159 20130412140154054-177 G10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.053+02 3 \N \N \N 2 3 3 G10,3,2,-1 \N 0 +160 20130412140154072-178 G11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.072+02 3 \N \N \N 2 3 3 G11,3,2,-1 \N 0 +161 20130412140154083-179 H1 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.082+02 3 \N \N \N 2 3 3 H1,3,2,-1 \N 0 +162 20130412140154093-180 H2 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.092+02 3 \N \N \N 2 3 3 H2,3,2,-1 \N 0 +163 20130412140154103-181 H3 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.102+02 3 \N \N \N 2 3 3 H3,3,2,-1 \N 0 +164 20130412140154112-182 H4 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.112+02 3 \N \N \N 2 3 3 H4,3,2,-1 \N 0 +165 20130412140154122-183 H5 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.122+02 3 \N \N \N 2 3 3 H5,3,2,-1 \N 0 +166 20130412140154132-184 H6 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.132+02 3 \N \N \N 2 3 3 H6,3,2,-1 \N 0 +167 20130412140154143-185 H7 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.142+02 3 \N \N \N 2 3 3 H7,3,2,-1 \N 0 +168 20130412140154153-186 H8 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.152+02 3 \N \N \N 2 3 3 H8,3,2,-1 \N 0 +169 20130412140154163-187 H9 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.163+02 3 \N \N \N 2 3 3 H9,3,2,-1 \N 0 +170 20130412140154174-188 H10 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.173+02 3 \N \N \N 2 3 3 H10,3,2,-1 \N 0 +171 20130412140154184-189 H11 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.183+02 3 \N \N \N 2 3 3 H11,3,2,-1 \N 0 +172 20130412140154194-190 H12 2 12 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.193+02 3 \N \N \N 2 3 3 H12,3,2,-1 \N 0 +3 20130412140147736-21 PLATE-2 2 11 2013-04-12 14:01:43.729885+02 2013-04-12 14:01:54.193+02 3 \N \N \N 2 \N 3 PLATE-2,-1,2,-1 \N 0 +199 20130412150558040-231 C2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.04+02 3 \N \N \N 3 173 3 C2,173,3,-1 \N 0 +200 20130412150558052-232 C3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.052+02 3 \N \N \N 3 173 3 C3,173,3,-1 \N 0 +201 20130412150558064-233 C4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.063+02 3 \N \N \N 3 173 3 C4,173,3,-1 \N 0 +202 20130412150558075-234 C5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.074+02 3 \N \N \N 3 173 3 C5,173,3,-1 \N 0 +203 20130412150558085-235 C6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.085+02 3 \N \N \N 3 173 3 C6,173,3,-1 \N 0 +175 20130412150557759-207 A1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.759+02 3 \N \N \N 3 173 3 A1,173,3,-1 \N 0 +176 20130412150557772-208 A2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.771+02 3 \N \N \N 3 173 3 A2,173,3,-1 \N 0 +177 20130412150557784-209 A3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.784+02 3 \N \N \N 3 173 3 A3,173,3,-1 \N 0 +178 20130412150557796-210 A4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.796+02 3 \N \N \N 3 173 3 A4,173,3,-1 \N 0 +179 20130412150557807-211 A5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.807+02 3 \N \N \N 3 173 3 A5,173,3,-1 \N 0 +180 20130412150557818-212 A6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.818+02 3 \N \N \N 3 173 3 A6,173,3,-1 \N 0 +181 20130412150557829-213 A7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.828+02 3 \N \N \N 3 173 3 A7,173,3,-1 \N 0 +182 20130412150557840-214 A8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.84+02 3 \N \N \N 3 173 3 A8,173,3,-1 \N 0 +183 20130412150557851-215 A9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.85+02 3 \N \N \N 3 173 3 A9,173,3,-1 \N 0 +184 20130412150557862-216 A10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.861+02 3 \N \N \N 3 173 3 A10,173,3,-1 \N 0 +185 20130412150557873-217 A11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.873+02 3 \N \N \N 3 173 3 A11,173,3,-1 \N 0 +186 20130412150557884-218 A12 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.883+02 3 \N \N \N 3 173 3 A12,173,3,-1 \N 0 +187 20130412150557895-219 B1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.894+02 3 \N \N \N 3 173 3 B1,173,3,-1 \N 0 +188 20130412150557907-220 B2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.906+02 3 \N \N \N 3 173 3 B2,173,3,-1 \N 0 +189 20130412150557922-221 B3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.922+02 3 \N \N \N 3 173 3 B3,173,3,-1 \N 0 +190 20130412150557934-222 B4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.934+02 3 \N \N \N 3 173 3 B4,173,3,-1 \N 0 +191 20130412150557945-223 B5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.945+02 3 \N \N \N 3 173 3 B5,173,3,-1 \N 0 +192 20130412150557957-224 B6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.957+02 3 \N \N \N 3 173 3 B6,173,3,-1 \N 0 +193 20130412150557970-225 B7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.969+02 3 \N \N \N 3 173 3 B7,173,3,-1 \N 0 +194 20130412150557981-226 B8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.981+02 3 \N \N \N 3 173 3 B8,173,3,-1 \N 0 +195 20130412150557993-227 B9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:57.993+02 3 \N \N \N 3 173 3 B9,173,3,-1 \N 0 +196 20130412150558005-228 B10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.004+02 3 \N \N \N 3 173 3 B10,173,3,-1 \N 0 +197 20130412150558017-229 B11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.016+02 3 \N \N \N 3 173 3 B11,173,3,-1 \N 0 +198 20130412150558029-230 C1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.028+02 3 \N \N \N 3 173 3 C1,173,3,-1 \N 0 +204 20130412150558096-236 C7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.095+02 3 \N \N \N 3 173 3 C7,173,3,-1 \N 0 +205 20130412150558106-237 C8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.106+02 3 \N \N \N 3 173 3 C8,173,3,-1 \N 0 +206 20130412150558117-238 C9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.116+02 3 \N \N \N 3 173 3 C9,173,3,-1 \N 0 +207 20130412150558127-239 C10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.126+02 3 \N \N \N 3 173 3 C10,173,3,-1 \N 0 +208 20130412150558137-240 C11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.136+02 3 \N \N \N 3 173 3 C11,173,3,-1 \N 0 +209 20130412150558148-241 D1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.147+02 3 \N \N \N 3 173 3 D1,173,3,-1 \N 0 +210 20130412150558159-242 D2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.159+02 3 \N \N \N 3 173 3 D2,173,3,-1 \N 0 +211 20130412150558170-243 D3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.169+02 3 \N \N \N 3 173 3 D3,173,3,-1 \N 0 +212 20130412150558181-244 D4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.18+02 3 \N \N \N 3 173 3 D4,173,3,-1 \N 0 +213 20130412150558191-245 D5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.191+02 3 \N \N \N 3 173 3 D5,173,3,-1 \N 0 +214 20130412150558202-246 D6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.202+02 3 \N \N \N 3 173 3 D6,173,3,-1 \N 0 +215 20130412150558213-247 D7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.212+02 3 \N \N \N 3 173 3 D7,173,3,-1 \N 0 +216 20130412150558224-248 D8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.223+02 3 \N \N \N 3 173 3 D8,173,3,-1 \N 0 +217 20130412150558234-249 D9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.234+02 3 \N \N \N 3 173 3 D9,173,3,-1 \N 0 +218 20130412150558245-250 D10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.244+02 3 \N \N \N 3 173 3 D10,173,3,-1 \N 0 +219 20130412150558256-251 D11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.255+02 3 \N \N \N 3 173 3 D11,173,3,-1 \N 0 +220 20130412150558267-252 E1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.267+02 3 \N \N \N 3 173 3 E1,173,3,-1 \N 0 +221 20130412150558278-253 E2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.278+02 3 \N \N \N 3 173 3 E2,173,3,-1 \N 0 +222 20130412150558289-254 E3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.289+02 3 \N \N \N 3 173 3 E3,173,3,-1 \N 0 +223 20130412150558302-255 E4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.301+02 3 \N \N \N 3 173 3 E4,173,3,-1 \N 0 +224 20130412150558313-256 E5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.312+02 3 \N \N \N 3 173 3 E5,173,3,-1 \N 0 +225 20130412150558324-257 E6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.323+02 3 \N \N \N 3 173 3 E6,173,3,-1 \N 0 +226 20130412150558335-258 E7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.334+02 3 \N \N \N 3 173 3 E7,173,3,-1 \N 0 +227 20130412150558346-259 E8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.345+02 3 \N \N \N 3 173 3 E8,173,3,-1 \N 0 +228 20130412150558356-260 E9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.356+02 3 \N \N \N 3 173 3 E9,173,3,-1 \N 0 +229 20130412150558367-261 E10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.366+02 3 \N \N \N 3 173 3 E10,173,3,-1 \N 0 +230 20130412150558377-262 E11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.377+02 3 \N \N \N 3 173 3 E11,173,3,-1 \N 0 +231 20130412150558388-263 F1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.388+02 3 \N \N \N 3 173 3 F1,173,3,-1 \N 0 +232 20130412150558399-264 F2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.399+02 3 \N \N \N 3 173 3 F2,173,3,-1 \N 0 +233 20130412150558410-265 F3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.41+02 3 \N \N \N 3 173 3 F3,173,3,-1 \N 0 +234 20130412150558421-266 F4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.42+02 3 \N \N \N 3 173 3 F4,173,3,-1 \N 0 +235 20130412150558431-267 F5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.43+02 3 \N \N \N 3 173 3 F5,173,3,-1 \N 0 +236 20130412150558441-268 F6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.441+02 3 \N \N \N 3 173 3 F6,173,3,-1 \N 0 +237 20130412150558452-269 F7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.451+02 3 \N \N \N 3 173 3 F7,173,3,-1 \N 0 +238 20130412150558462-270 F8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.462+02 3 \N \N \N 3 173 3 F8,173,3,-1 \N 0 +239 20130412150558474-271 F9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.473+02 3 \N \N \N 3 173 3 F9,173,3,-1 \N 0 +240 20130412150558485-272 F10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.485+02 3 \N \N \N 3 173 3 F10,173,3,-1 \N 0 +241 20130412150558496-273 F11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.495+02 3 \N \N \N 3 173 3 F11,173,3,-1 \N 0 +242 20130412150558506-274 G1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.505+02 3 \N \N \N 3 173 3 G1,173,3,-1 \N 0 +243 20130412150558517-275 G2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.516+02 3 \N \N \N 3 173 3 G2,173,3,-1 \N 0 +244 20130412150558527-276 G3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.527+02 3 \N \N \N 3 173 3 G3,173,3,-1 \N 0 +245 20130412150558538-277 G4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.537+02 3 \N \N \N 3 173 3 G4,173,3,-1 \N 0 +246 20130412150558548-278 G5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.547+02 3 \N \N \N 3 173 3 G5,173,3,-1 \N 0 +247 20130412150558558-279 G6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.558+02 3 \N \N \N 3 173 3 G6,173,3,-1 \N 0 +248 20130412150558569-280 G7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.568+02 3 \N \N \N 3 173 3 G7,173,3,-1 \N 0 +249 20130412150558579-281 G8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.579+02 3 \N \N \N 3 173 3 G8,173,3,-1 \N 0 +250 20130412150558590-282 G9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.589+02 3 \N \N \N 3 173 3 G9,173,3,-1 \N 0 +251 20130412150558600-283 G10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.6+02 3 \N \N \N 3 173 3 G10,173,3,-1 \N 0 +252 20130412150558611-284 G11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.61+02 3 \N \N \N 3 173 3 G11,173,3,-1 \N 0 +253 20130412150558621-285 H1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.62+02 3 \N \N \N 3 173 3 H1,173,3,-1 \N 0 +254 20130412150558709-286 A1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.708+02 3 \N \N \N 3 174 3 A1,174,3,-1 \N 0 +255 20130412150558720-287 A2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.719+02 3 \N \N \N 3 174 3 A2,174,3,-1 \N 0 +256 20130412150558731-288 A3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.73+02 3 \N \N \N 3 174 3 A3,174,3,-1 \N 0 +257 20130412150558742-289 A4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.741+02 3 \N \N \N 3 174 3 A4,174,3,-1 \N 0 +258 20130412150558752-290 A5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.752+02 3 \N \N \N 3 174 3 A5,174,3,-1 \N 0 +259 20130412150558763-291 A6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.762+02 3 \N \N \N 3 174 3 A6,174,3,-1 \N 0 +260 20130412150558773-292 A7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.773+02 3 \N \N \N 3 174 3 A7,174,3,-1 \N 0 +261 20130412150558784-293 A8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.784+02 3 \N \N \N 3 174 3 A8,174,3,-1 \N 0 +262 20130412150558796-294 A9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.795+02 3 \N \N \N 3 174 3 A9,174,3,-1 \N 0 +263 20130412150558807-295 A10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.807+02 3 \N \N \N 3 174 3 A10,174,3,-1 \N 0 +264 20130412150558818-296 A11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.818+02 3 \N \N \N 3 174 3 A11,174,3,-1 \N 0 +265 20130412150558828-297 A12 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.828+02 3 \N \N \N 3 174 3 A12,174,3,-1 \N 0 +266 20130412150558839-298 B1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.838+02 3 \N \N \N 3 174 3 B1,174,3,-1 \N 0 +267 20130412150558849-299 B2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.849+02 3 \N \N \N 3 174 3 B2,174,3,-1 \N 0 +268 20130412150558860-300 B3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.859+02 3 \N \N \N 3 174 3 B3,174,3,-1 \N 0 +269 20130412150558870-301 B4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.869+02 3 \N \N \N 3 174 3 B4,174,3,-1 \N 0 +270 20130412150558881-302 B5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.88+02 3 \N \N \N 3 174 3 B5,174,3,-1 \N 0 +271 20130412150558892-303 B6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.892+02 3 \N \N \N 3 174 3 B6,174,3,-1 \N 0 +272 20130412150558904-304 B7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.903+02 3 \N \N \N 3 174 3 B7,174,3,-1 \N 0 +273 20130412150558915-305 B8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.914+02 3 \N \N \N 3 174 3 B8,174,3,-1 \N 0 +274 20130412150558925-306 B9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.925+02 3 \N \N \N 3 174 3 B9,174,3,-1 \N 0 +275 20130412150558936-307 B10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.935+02 3 \N \N \N 3 174 3 B10,174,3,-1 \N 0 +276 20130412150558947-308 B11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.946+02 3 \N \N \N 3 174 3 B11,174,3,-1 \N 0 +277 20130412150558957-309 C1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.957+02 3 \N \N \N 3 174 3 C1,174,3,-1 \N 0 +278 20130412150558968-310 C2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.967+02 3 \N \N \N 3 174 3 C2,174,3,-1 \N 0 +279 20130412150558978-311 C3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.978+02 3 \N \N \N 3 174 3 C3,174,3,-1 \N 0 +280 20130412150558989-312 C4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.988+02 3 \N \N \N 3 174 3 C4,174,3,-1 \N 0 +281 20130412150558999-313 C5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:58.999+02 3 \N \N \N 3 174 3 C5,174,3,-1 \N 0 +282 20130412150559009-314 C6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.009+02 3 \N \N \N 3 174 3 C6,174,3,-1 \N 0 +283 20130412150559020-315 C7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.02+02 3 \N \N \N 3 174 3 C7,174,3,-1 \N 0 +284 20130412150559031-316 C8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.03+02 3 \N \N \N 3 174 3 C8,174,3,-1 \N 0 +285 20130412150559041-317 C9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.041+02 3 \N \N \N 3 174 3 C9,174,3,-1 \N 0 +286 20130412150559052-318 C10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.051+02 3 \N \N \N 3 174 3 C10,174,3,-1 \N 0 +287 20130412150559063-319 C11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.062+02 3 \N \N \N 3 174 3 C11,174,3,-1 \N 0 +288 20130412150559074-320 D1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.073+02 3 \N \N \N 3 174 3 D1,174,3,-1 \N 0 +289 20130412150559085-321 D2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.085+02 3 \N \N \N 3 174 3 D2,174,3,-1 \N 0 +290 20130412150559097-322 D3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.096+02 3 \N \N \N 3 174 3 D3,174,3,-1 \N 0 +291 20130412150559109-323 D4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.108+02 3 \N \N \N 3 174 3 D4,174,3,-1 \N 0 +292 20130412150559120-324 D5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.119+02 3 \N \N \N 3 174 3 D5,174,3,-1 \N 0 +293 20130412150559131-325 D6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.13+02 3 \N \N \N 3 174 3 D6,174,3,-1 \N 0 +294 20130412150559143-326 D7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.143+02 3 \N \N \N 3 174 3 D7,174,3,-1 \N 0 +295 20130412150559160-327 D8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.16+02 3 \N \N \N 3 174 3 D8,174,3,-1 \N 0 +296 20130412150559173-328 D9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.172+02 3 \N \N \N 3 174 3 D9,174,3,-1 \N 0 +297 20130412150559186-329 D10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.185+02 3 \N \N \N 3 174 3 D10,174,3,-1 \N 0 +298 20130412150559198-330 D11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.198+02 3 \N \N \N 3 174 3 D11,174,3,-1 \N 0 +299 20130412150559210-331 E1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.209+02 3 \N \N \N 3 174 3 E1,174,3,-1 \N 0 +300 20130412150559222-332 E2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.221+02 3 \N \N \N 3 174 3 E2,174,3,-1 \N 0 +301 20130412150559234-333 E3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.233+02 3 \N \N \N 3 174 3 E3,174,3,-1 \N 0 +302 20130412150559247-334 E4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.246+02 3 \N \N \N 3 174 3 E4,174,3,-1 \N 0 +303 20130412150559258-335 E5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.258+02 3 \N \N \N 3 174 3 E5,174,3,-1 \N 0 +304 20130412150559270-336 E6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.269+02 3 \N \N \N 3 174 3 E6,174,3,-1 \N 0 +305 20130412150559280-337 E7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.28+02 3 \N \N \N 3 174 3 E7,174,3,-1 \N 0 +306 20130412150559291-338 E8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.291+02 3 \N \N \N 3 174 3 E8,174,3,-1 \N 0 +307 20130412150559302-339 E9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.301+02 3 \N \N \N 3 174 3 E9,174,3,-1 \N 0 +308 20130412150559312-340 E10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.312+02 3 \N \N \N 3 174 3 E10,174,3,-1 \N 0 +309 20130412150559323-341 E11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.322+02 3 \N \N \N 3 174 3 E11,174,3,-1 \N 0 +310 20130412150559333-342 F1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.332+02 3 \N \N \N 3 174 3 F1,174,3,-1 \N 0 +311 20130412150559344-343 F2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.343+02 3 \N \N \N 3 174 3 F2,174,3,-1 \N 0 +312 20130412150559354-344 F3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.354+02 3 \N \N \N 3 174 3 F3,174,3,-1 \N 0 +313 20130412150559364-345 F4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.364+02 3 \N \N \N 3 174 3 F4,174,3,-1 \N 0 +314 20130412150559375-346 F5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.375+02 3 \N \N \N 3 174 3 F5,174,3,-1 \N 0 +315 20130412150559385-347 F6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.385+02 3 \N \N \N 3 174 3 F6,174,3,-1 \N 0 +316 20130412150559396-348 F7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.395+02 3 \N \N \N 3 174 3 F7,174,3,-1 \N 0 +317 20130412150559406-349 F8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.406+02 3 \N \N \N 3 174 3 F8,174,3,-1 \N 0 +318 20130412150559417-350 F9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.416+02 3 \N \N \N 3 174 3 F9,174,3,-1 \N 0 +319 20130412150559427-351 F10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.427+02 3 \N \N \N 3 174 3 F10,174,3,-1 \N 0 +320 20130412150559438-352 F11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.437+02 3 \N \N \N 3 174 3 F11,174,3,-1 \N 0 +321 20130412150559449-353 G1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.448+02 3 \N \N \N 3 174 3 G1,174,3,-1 \N 0 +322 20130412150559460-354 G2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.46+02 3 \N \N \N 3 174 3 G2,174,3,-1 \N 0 +323 20130412150559471-355 G3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.471+02 3 \N \N \N 3 174 3 G3,174,3,-1 \N 0 +324 20130412150559482-356 G4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.481+02 3 \N \N \N 3 174 3 G4,174,3,-1 \N 0 +325 20130412150559492-357 G5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.491+02 3 \N \N \N 3 174 3 G5,174,3,-1 \N 0 +326 20130412150559502-358 G6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.501+02 3 \N \N \N 3 174 3 G6,174,3,-1 \N 0 +327 20130412150559512-359 G7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.512+02 3 \N \N \N 3 174 3 G7,174,3,-1 \N 0 +328 20130412150559523-360 G8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.522+02 3 \N \N \N 3 174 3 G8,174,3,-1 \N 0 +329 20130412150559533-361 G9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.533+02 3 \N \N \N 3 174 3 G9,174,3,-1 \N 0 +330 20130412150559544-362 G10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.543+02 3 \N \N \N 3 174 3 G10,174,3,-1 \N 0 +331 20130412150559554-363 G11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.554+02 3 \N \N \N 3 174 3 G11,174,3,-1 \N 0 +332 20130412150559565-364 H1 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.564+02 3 \N \N \N 3 174 3 H1,174,3,-1 \N 0 +333 20130412150559575-365 H2 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.575+02 3 \N \N \N 3 174 3 H2,174,3,-1 \N 0 +334 20130412150559586-366 H3 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.585+02 3 \N \N \N 3 174 3 H3,174,3,-1 \N 0 +335 20130412150559596-367 H4 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.596+02 3 \N \N \N 3 174 3 H4,174,3,-1 \N 0 +336 20130412150559607-368 H5 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.606+02 3 \N \N \N 3 174 3 H5,174,3,-1 \N 0 +337 20130412150559617-369 H6 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.617+02 3 \N \N \N 3 174 3 H6,174,3,-1 \N 0 +338 20130412150559628-370 H7 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.627+02 3 \N \N \N 3 174 3 H7,174,3,-1 \N 0 +339 20130412150559639-371 H8 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.638+02 3 \N \N \N 3 174 3 H8,174,3,-1 \N 0 +340 20130412150559649-372 H9 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.649+02 3 \N \N \N 3 174 3 H9,174,3,-1 \N 0 +341 20130412150559659-373 H10 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.659+02 3 \N \N \N 3 174 3 H10,174,3,-1 \N 0 +342 20130412150559671-374 H11 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.67+02 3 \N \N \N 3 174 3 H11,174,3,-1 \N 0 +343 20130412150559681-375 H12 3 12 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.681+02 3 \N \N \N 3 174 3 H12,174,3,-1 \N 0 +174 20130412150557128-206 PLATE-2 3 11 2013-04-12 15:05:56.510458+02 2013-04-12 15:05:59.681+02 3 \N \N \N 3 \N 3 PLATE-2,-1,3,-1 \N 0 +348 20130415095828217-406 TEST-SAMPLE-2-CHILD-2 6 1 2013-04-15 09:58:27.586828+02 2013-04-15 09:58:28.095+02 3 \N \N \N 3 \N 3 TEST-SAMPLE-2-CHILD-2,-1,3,-1 \N 0 +173 20130412150557128-205 PLATE-1A 3 11 2013-04-12 15:05:56.510458+02 2013-04-12 15:20:50.204+02 3 \N \N \N 3 \N 2 PLATE-1A,-1,3,-1 \N 0 +347 20130415095823341-405 TEST-SAMPLE-2-CHILD-1 6 1 2013-04-15 09:58:22.702187+02 2013-04-15 09:58:23.219+02 3 \N \N \N 3 \N 3 TEST-SAMPLE-2-CHILD-1,-1,3,-1 \N 0 +346 20130415095748527-404 TEST-SAMPLE-2-PARENT 6 1 2013-04-15 09:57:48.163205+02 2013-04-15 09:58:49.932+02 3 \N \N \N 3 \N 3 TEST-SAMPLE-2-PARENT,-1,3,-1 \N 0 +350 20130417094911967-426 SERIES-1 5 13 2013-04-17 09:49:11.629968+02 2013-04-17 09:49:42.458+02 3 \N \N \N 2 \N 2 SERIES-1,-1,2,-1 \N 0 +352 20130424134721644-434 TEST-SAMPLE-1-CONTAINED-1 \N 1 2013-04-24 13:47:21.515576+02 2013-04-24 13:47:21.633+02 3 \N \N \N 3 351 3 TEST-SAMPLE-1-CONTAINED-1,351,3,-1 \N 0 +353 20130424134742549-435 TEST-SAMPLE-1-CONTAINED-2 \N 1 2013-04-24 13:47:42.455921+02 2013-04-24 13:47:42.541+02 3 \N \N \N 3 351 3 TEST-SAMPLE-1-CONTAINED-2,351,3,-1 \N 0 +351 20130424134657597-433 TEST-SAMPLE-1 \N 1 2013-04-24 13:46:57.422371+02 2013-04-24 13:47:42.541+02 3 \N \N \N 3 \N 3 TEST-SAMPLE-1,-1,3,-1 \N 0 +2 20130412140147735-20 PLATE-1 2 11 2013-04-12 14:01:43.729885+02 2013-04-12 15:37:03.109+02 3 \N \N \N 2 \N 2 PLATE-1,-1,2,-1 \N 42 +345 20130415091923485-402 TEST-SAMPLE-2 6 1 2013-04-15 09:19:23.189016+02 2013-04-24 14:50:08.09+02 3 \N \N \N 3 \N 4 TEST-SAMPLE-2,-1,3,-1 \N 17 +\. + + +-- +-- Data for Name: scripts; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY scripts (id, dbin_id, name, script_type, description, script, registration_timestamp, pers_id_registerer, entity_kind, plugin_type, is_available) FROM stdin; +1 1 Diff_time DYNAMIC_PROPERTY Calculates the difference of two given dates from datetime import datetime\n\ndef dateTimeSplitter(openbisDate):\n dateAndTime, tz = openbisDate.rsplit(" ", 1)\n pythonDateTime = datetime.strptime(dateAndTime, "%Y-%m-%d %H:%M:%S") \n return pythonDateTime\n\ndef calculate():\n \n try:\n start = dateTimeSplitter(entity.propertyValue('FLOW_CELL_SEQUENCED_ON'))\n end = dateTimeSplitter(entity.propertyValue('SEQUENCER_FINISHED'))\n diffTime = end-start\n return str(diffTime)\n except:\n return "N/A"\n 2013-04-12 10:04:56.658885+02 1 SAMPLE JYTHON t +2 1 Has_Parents ENTITY_VALIDATION Check if the Entity has a parent def validate(entity, isNew):\n parents = entity.entityPE().parents\n if parents:\n return None\n else:\n return "No Parents have been selected!"\n 2013-04-12 10:04:56.658885+02 1 SAMPLE JYTHON t +\. + + +-- +-- Data for Name: spaces; Type: TABLE DATA; Schema: public; Owner: - +-- + +COPY spaces (id, code, dbin_id, description, registration_timestamp, pers_id_registerer) FROM stdin; +2 PLATONIC 1 \N 2013-04-12 10:36:41.094731+02 3 +3 TEST 1 \N 2013-04-12 14:59:00.75622+02 3 +\. + + +-- +-- Name: ag_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY authorization_groups + ADD CONSTRAINT ag_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: ag_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY authorization_groups + ADD CONSTRAINT ag_pk PRIMARY KEY (id); + + +-- +-- Name: agp_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY authorization_group_persons + ADD CONSTRAINT agp_pk PRIMARY KEY (pers_id, ag_id); + + +-- +-- Name: atta_expe_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_expe_bk_uk UNIQUE (expe_id, file_name, version); + + +-- +-- Name: atta_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_pk PRIMARY KEY (id); + + +-- +-- Name: atta_proj_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_proj_bk_uk UNIQUE (proj_id, file_name, version); + + +-- +-- Name: atta_samp_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_samp_bk_uk UNIQUE (samp_id, file_name, version); + + +-- +-- Name: copl_name_ver_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY core_plugins + ADD CONSTRAINT copl_name_ver_uk UNIQUE (name, version); + + +-- +-- Name: covo_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY controlled_vocabularies + ADD CONSTRAINT covo_bk_uk UNIQUE (code, is_internal_namespace, dbin_id); + + +-- +-- Name: covo_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY controlled_vocabularies + ADD CONSTRAINT covo_pk PRIMARY KEY (id); + + +-- +-- Name: cvte_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY controlled_vocabulary_terms + ADD CONSTRAINT cvte_bk_uk UNIQUE (code, covo_id); + + +-- +-- Name: cvte_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY controlled_vocabulary_terms + ADD CONSTRAINT cvte_pk PRIMARY KEY (id); + + +-- +-- Name: dast_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_stores + ADD CONSTRAINT dast_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: dast_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_stores + ADD CONSTRAINT dast_pk PRIMARY KEY (id); + + +-- +-- Name: data_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_bk_uk UNIQUE (code); + + +-- +-- Name: data_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_pk PRIMARY KEY (id); + + +-- +-- Name: datarelh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_relationships_history + ADD CONSTRAINT datarelh_pk PRIMARY KEY (id); + + +-- +-- Name: daty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_types + ADD CONSTRAINT daty_bk_uk UNIQUE (code); + + +-- +-- Name: daty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_types + ADD CONSTRAINT daty_pk PRIMARY KEY (id); + + +-- +-- Name: dbin_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY database_instances + ADD CONSTRAINT dbin_bk_uk UNIQUE (code); + + +-- +-- Name: dbin_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY database_instances + ADD CONSTRAINT dbin_pk PRIMARY KEY (id); + + +-- +-- Name: dbin_uuid_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY database_instances + ADD CONSTRAINT dbin_uuid_uk UNIQUE (uuid); + + +-- +-- Name: del_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY deletions + ADD CONSTRAINT del_pk PRIMARY KEY (id); + + +-- +-- Name: dspr_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_bk_uk UNIQUE (ds_id, dstpt_id); + + +-- +-- Name: dspr_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_pk PRIMARY KEY (id); + + +-- +-- Name: dsprh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_properties_history + ADD CONSTRAINT dsprh_pk PRIMARY KEY (id); + + +-- +-- Name: dsre_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_relationships_all + ADD CONSTRAINT dsre_bk_uk UNIQUE (data_id_child, data_id_parent); + + +-- +-- Name: dssdst_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_store_service_data_set_types + ADD CONSTRAINT dssdst_bk_uk UNIQUE (data_store_service_id, data_set_type_id); + + +-- +-- Name: dsse_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_store_services + ADD CONSTRAINT dsse_bk_uk UNIQUE (key, data_store_id); + + +-- +-- Name: dsse_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_store_services + ADD CONSTRAINT dsse_pk PRIMARY KEY (id); + + +-- +-- Name: dstpt_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_type_property_types + ADD CONSTRAINT dstpt_bk_uk UNIQUE (dsty_id, prty_id); + + +-- +-- Name: dstpt_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_type_property_types + ADD CONSTRAINT dstpt_pk PRIMARY KEY (id); + + +-- +-- Name: dsty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_types + ADD CONSTRAINT dsty_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: dsty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY data_set_types + ADD CONSTRAINT dsty_pk PRIMARY KEY (id); + + +-- +-- Name: edms_code_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY external_data_management_systems + ADD CONSTRAINT edms_code_uk UNIQUE (code, dbin_id); + + +-- +-- Name: edms_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY external_data_management_systems + ADD CONSTRAINT edms_pk PRIMARY KEY (id); + + +-- +-- Name: eol_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY entity_operations_log + ADD CONSTRAINT eol_pk PRIMARY KEY (id); + + +-- +-- Name: eol_reg_id_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY entity_operations_log + ADD CONSTRAINT eol_reg_id_uk UNIQUE (registration_id); + + +-- +-- Name: etpt_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_type_property_types + ADD CONSTRAINT etpt_bk_uk UNIQUE (exty_id, prty_id); + + +-- +-- Name: etpt_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_type_property_types + ADD CONSTRAINT etpt_pk PRIMARY KEY (id); + + +-- +-- Name: evnt_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY events + ADD CONSTRAINT evnt_pk PRIMARY KEY (id); + + +-- +-- Name: exac_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY attachment_contents + ADD CONSTRAINT exac_pk PRIMARY KEY (id); + + +-- +-- Name: exda_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_bk_uk UNIQUE (location, loty_id); + + +-- +-- Name: exda_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_pk PRIMARY KEY (data_id); + + +-- +-- Name: expe_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_bk_uk UNIQUE (code, proj_id); + + +-- +-- Name: expe_pi_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_pi_uk UNIQUE (perm_id); + + +-- +-- Name: expe_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_pk PRIMARY KEY (id); + + +-- +-- Name: expr_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_bk_uk UNIQUE (expe_id, etpt_id); + + +-- +-- Name: expr_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_pk PRIMARY KEY (id); + + +-- +-- Name: exprh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_properties_history + ADD CONSTRAINT exprh_pk PRIMARY KEY (id); + + +-- +-- Name: exrelh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_relationships_history + ADD CONSTRAINT exrelh_pk PRIMARY KEY (id); + + +-- +-- Name: exty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_types + ADD CONSTRAINT exty_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: exty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY experiment_types + ADD CONSTRAINT exty_pk PRIMARY KEY (id); + + +-- +-- Name: ffty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY file_format_types + ADD CONSTRAINT ffty_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: ffty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY file_format_types + ADD CONSTRAINT ffty_pk PRIMARY KEY (id); + + +-- +-- Name: filt_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY filters + ADD CONSTRAINT filt_bk_uk UNIQUE (name, dbin_id, grid_id); + + +-- +-- Name: filt_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY filters + ADD CONSTRAINT filt_pk PRIMARY KEY (id); + + +-- +-- Name: grid_custom_columns_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY grid_custom_columns + ADD CONSTRAINT grid_custom_columns_bk_uk UNIQUE (code, dbin_id, grid_id); + + +-- +-- Name: grid_custom_columns_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY grid_custom_columns + ADD CONSTRAINT grid_custom_columns_pk PRIMARY KEY (id); + + +-- +-- Name: lnda_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY link_data + ADD CONSTRAINT lnda_pk PRIMARY KEY (data_id); + + +-- +-- Name: loty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY locator_types + ADD CONSTRAINT loty_bk_uk UNIQUE (code); + + +-- +-- Name: loty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY locator_types + ADD CONSTRAINT loty_pk PRIMARY KEY (id); + + +-- +-- Name: mapr_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_bk_uk UNIQUE (mate_id, mtpt_id); + + +-- +-- Name: mapr_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_pk PRIMARY KEY (id); + + +-- +-- Name: maprh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_properties_history + ADD CONSTRAINT maprh_pk PRIMARY KEY (id); + + +-- +-- Name: mate_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY materials + ADD CONSTRAINT mate_bk_uk UNIQUE (code, maty_id, dbin_id); + + +-- +-- Name: mate_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY materials + ADD CONSTRAINT mate_pk PRIMARY KEY (id); + + +-- +-- Name: maty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_types + ADD CONSTRAINT maty_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: maty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_types + ADD CONSTRAINT maty_pk PRIMARY KEY (id); + + +-- +-- Name: metaproject_assignments_all_mepr_id_data_id_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_mepr_id_data_id_uk UNIQUE (mepr_id, data_id); + + +-- +-- Name: metaproject_assignments_all_mepr_id_expe_id_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_mepr_id_expe_id_uk UNIQUE (mepr_id, expe_id); + + +-- +-- Name: metaproject_assignments_all_mepr_id_mate_id_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_mepr_id_mate_id_uk UNIQUE (mepr_id, mate_id); + + +-- +-- Name: metaproject_assignments_all_mepr_id_samp_id_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_mepr_id_samp_id_uk UNIQUE (mepr_id, samp_id); + + +-- +-- Name: metaproject_assignments_all_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_pk PRIMARY KEY (id); + + +-- +-- Name: metaprojects_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY metaprojects + ADD CONSTRAINT metaprojects_pk PRIMARY KEY (id); + + +-- +-- Name: mtpt_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_type_property_types + ADD CONSTRAINT mtpt_bk_uk UNIQUE (maty_id, prty_id); + + +-- +-- Name: mtpt_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY material_type_property_types + ADD CONSTRAINT mtpt_pk PRIMARY KEY (id); + + +-- +-- Name: pers_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY persons + ADD CONSTRAINT pers_bk_uk UNIQUE (dbin_id, user_id); + + +-- +-- Name: pers_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY persons + ADD CONSTRAINT pers_pk PRIMARY KEY (id); + + +-- +-- Name: prdq_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY post_registration_dataset_queue + ADD CONSTRAINT prdq_pk PRIMARY KEY (id); + + +-- +-- Name: proj_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_bk_uk UNIQUE (code, space_id); + + +-- +-- Name: proj_pi_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_pi_uk UNIQUE (perm_id); + + +-- +-- Name: proj_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_pk PRIMARY KEY (id); + + +-- +-- Name: prrelh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY project_relationships_history + ADD CONSTRAINT prrelh_pk PRIMARY KEY (id); + + +-- +-- Name: prty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_bk_uk UNIQUE (code, is_internal_namespace, dbin_id); + + +-- +-- Name: prty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_pk PRIMARY KEY (id); + + +-- +-- Name: quer_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY queries + ADD CONSTRAINT quer_bk_uk UNIQUE (name, dbin_id); + + +-- +-- Name: quer_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY queries + ADD CONSTRAINT quer_pk PRIMARY KEY (id); + + +-- +-- Name: rety_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY relationship_types + ADD CONSTRAINT rety_pk PRIMARY KEY (id); + + +-- +-- Name: rety_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY relationship_types + ADD CONSTRAINT rety_uk UNIQUE (code, dbin_id); + + +-- +-- Name: roas_ag_instance_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_ag_instance_bk_uk UNIQUE (ag_id_grantee, role_code, dbin_id); + + +-- +-- Name: roas_ag_space_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_ag_space_bk_uk UNIQUE (ag_id_grantee, role_code, space_id); + + +-- +-- Name: roas_pe_instance_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_pe_instance_bk_uk UNIQUE (pers_id_grantee, role_code, dbin_id); + + +-- +-- Name: roas_pe_space_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_pe_space_bk_uk UNIQUE (pers_id_grantee, role_code, space_id); + + +-- +-- Name: roas_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_pk PRIMARY KEY (id); + + +-- +-- Name: samp_code_unique_check_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_code_unique_check_uk UNIQUE (code_unique_check); + + +-- +-- Name: samp_pi_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_pi_uk UNIQUE (perm_id); + + +-- +-- Name: samp_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_pk PRIMARY KEY (id); + + +-- +-- Name: samp_subcode_unique_check_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_subcode_unique_check_uk UNIQUE (subcode_unique_check); + + +-- +-- Name: samprelh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_relationships_history + ADD CONSTRAINT samprelh_pk PRIMARY KEY (id); + + +-- +-- Name: sapr_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_bk_uk UNIQUE (samp_id, stpt_id); + + +-- +-- Name: sapr_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_pk PRIMARY KEY (id); + + +-- +-- Name: saprh_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_properties_history + ADD CONSTRAINT saprh_pk PRIMARY KEY (id); + + +-- +-- Name: sare_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sare_bk_uk UNIQUE (sample_id_child, sample_id_parent, relationship_id); + + +-- +-- Name: sare_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sare_pk PRIMARY KEY (id); + + +-- +-- Name: saty_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_types + ADD CONSTRAINT saty_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: saty_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_types + ADD CONSTRAINT saty_pk PRIMARY KEY (id); + + +-- +-- Name: scri_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY scripts + ADD CONSTRAINT scri_pk PRIMARY KEY (id); + + +-- +-- Name: scri_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY scripts + ADD CONSTRAINT scri_uk UNIQUE (name, dbin_id); + + +-- +-- Name: space_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY spaces + ADD CONSTRAINT space_bk_uk UNIQUE (code, dbin_id); + + +-- +-- Name: space_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY spaces + ADD CONSTRAINT space_pk PRIMARY KEY (id); + + +-- +-- Name: stpt_bk_uk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_type_property_types + ADD CONSTRAINT stpt_bk_uk UNIQUE (saty_id, prty_id); + + +-- +-- Name: stpt_pk; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace: +-- + +ALTER TABLE ONLY sample_type_property_types + ADD CONSTRAINT stpt_pk PRIMARY KEY (id); + + +-- +-- Name: atta_exac_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX atta_exac_fk_i ON attachments USING btree (exac_id); + + +-- +-- Name: atta_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX atta_expe_fk_i ON attachments USING btree (expe_id); + + +-- +-- Name: atta_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX atta_pers_fk_i ON attachments USING btree (pers_id_registerer); + + +-- +-- Name: atta_proj_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX atta_proj_fk_i ON attachments USING btree (proj_id); + + +-- +-- Name: atta_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX atta_samp_fk_i ON attachments USING btree (samp_id); + + +-- +-- Name: covo_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX covo_pers_fk_i ON controlled_vocabularies USING btree (pers_id_registerer); + + +-- +-- Name: cvte_covo_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX cvte_covo_fk_i ON controlled_vocabulary_terms USING btree (covo_id); + + +-- +-- Name: cvte_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX cvte_pers_fk_i ON controlled_vocabulary_terms USING btree (pers_id_registerer); + + +-- +-- Name: dast_dbin_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dast_dbin_fk_i ON data_stores USING btree (dbin_id); + + +-- +-- Name: data_del_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_del_fk_i ON data_all USING btree (del_id); + + +-- +-- Name: data_dsty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_dsty_fk_i ON data_all USING btree (dsty_id); + + +-- +-- Name: data_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_expe_fk_i ON data_all USING btree (expe_id); + + +-- +-- Name: data_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX data_samp_fk_i ON data_all USING btree (samp_id); + + +-- +-- Name: datarelh_data_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX datarelh_data_fk_i ON data_set_relationships_history USING btree (data_id); + + +-- +-- Name: datarelh_main_data_fk_data_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX datarelh_main_data_fk_data_fk_i ON data_set_relationships_history USING btree (main_data_id, data_id); + + +-- +-- Name: datarelh_main_data_fk_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX datarelh_main_data_fk_expe_fk_i ON data_set_relationships_history USING btree (main_data_id, expe_id); + + +-- +-- Name: datarelh_main_data_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX datarelh_main_data_fk_i ON data_set_relationships_history USING btree (main_data_id); + + +-- +-- Name: datarelh_main_data_fk_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX datarelh_main_data_fk_samp_fk_i ON data_set_relationships_history USING btree (main_data_id, samp_id); + + +-- +-- Name: del_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX del_pers_fk_i ON deletions USING btree (pers_id_registerer); + + +-- +-- Name: dspr_cvte_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dspr_cvte_fk_i ON data_set_properties USING btree (cvte_id); + + +-- +-- Name: dspr_ds_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dspr_ds_fk_i ON data_set_properties USING btree (ds_id); + + +-- +-- Name: dspr_dstpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dspr_dstpt_fk_i ON data_set_properties USING btree (dstpt_id); + + +-- +-- Name: dspr_mapr_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dspr_mapr_fk_i ON data_set_properties USING btree (mate_prop_id); + + +-- +-- Name: dspr_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dspr_pers_fk_i ON data_set_properties USING btree (pers_id_registerer); + + +-- +-- Name: dsprh_etpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsprh_etpt_fk_i ON data_set_properties_history USING btree (dstpt_id); + + +-- +-- Name: dsprh_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsprh_expe_fk_i ON data_set_properties_history USING btree (ds_id); + + +-- +-- Name: dsprh_vuts_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsprh_vuts_fk_i ON data_set_properties_history USING btree (valid_until_timestamp); + + +-- +-- Name: dsre_data_fk_i_child; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsre_data_fk_i_child ON data_set_relationships_all USING btree (data_id_child); + + +-- +-- Name: dsre_data_fk_i_parent; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsre_data_fk_i_parent ON data_set_relationships_all USING btree (data_id_parent); + + +-- +-- Name: dsre_del_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsre_del_fk_i ON data_set_relationships_all USING btree (del_id); + + +-- +-- Name: dssdst_ds_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dssdst_ds_fk_i ON data_store_service_data_set_types USING btree (data_store_service_id); + + +-- +-- Name: dssdst_dst_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dssdst_dst_fk_i ON data_store_service_data_set_types USING btree (data_set_type_id); + + +-- +-- Name: dsse_ds_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dsse_ds_fk_i ON data_store_services USING btree (data_store_id); + + +-- +-- Name: dstpt_dsty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dstpt_dsty_fk_i ON data_set_type_property_types USING btree (dsty_id); + + +-- +-- Name: dstpt_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dstpt_pers_fk_i ON data_set_type_property_types USING btree (pers_id_registerer); + + +-- +-- Name: dstpt_prty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX dstpt_prty_fk_i ON data_set_type_property_types USING btree (prty_id); + + +-- +-- Name: entity_operations_log_rid_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX entity_operations_log_rid_i ON entity_operations_log USING btree (registration_id); + + +-- +-- Name: etpt_exty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX etpt_exty_fk_i ON experiment_type_property_types USING btree (exty_id); + + +-- +-- Name: etpt_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX etpt_pers_fk_i ON experiment_type_property_types USING btree (pers_id_registerer); + + +-- +-- Name: etpt_prty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX etpt_prty_fk_i ON experiment_type_property_types USING btree (prty_id); + + +-- +-- Name: evnt_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX evnt_pers_fk_i ON events USING btree (pers_id_registerer); + + +-- +-- Name: exda_cvte_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exda_cvte_fk_i ON external_data USING btree (cvte_id_stor_fmt); + + +-- +-- Name: exda_cvte_stored_on_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exda_cvte_stored_on_fk_i ON external_data USING btree (cvte_id_store); + + +-- +-- Name: exda_ffty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exda_ffty_fk_i ON external_data USING btree (ffty_id); + + +-- +-- Name: exda_loty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exda_loty_fk_i ON external_data USING btree (loty_id); + + +-- +-- Name: expe_del_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expe_del_fk_i ON experiments_all USING btree (del_id); + + +-- +-- Name: expe_exty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expe_exty_fk_i ON experiments_all USING btree (exty_id); + + +-- +-- Name: expe_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expe_pers_fk_i ON experiments_all USING btree (pers_id_registerer); + + +-- +-- Name: expe_proj_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expe_proj_fk_i ON experiments_all USING btree (proj_id); + + +-- +-- Name: expr_cvte_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expr_cvte_fk_i ON experiment_properties USING btree (cvte_id); + + +-- +-- Name: expr_etpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expr_etpt_fk_i ON experiment_properties USING btree (etpt_id); + + +-- +-- Name: expr_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expr_expe_fk_i ON experiment_properties USING btree (expe_id); + + +-- +-- Name: expr_mapr_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expr_mapr_fk_i ON experiment_properties USING btree (mate_prop_id); + + +-- +-- Name: expr_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX expr_pers_fk_i ON experiment_properties USING btree (pers_id_registerer); + + +-- +-- Name: exprh_etpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exprh_etpt_fk_i ON experiment_properties_history USING btree (etpt_id); + + +-- +-- Name: exprh_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exprh_expe_fk_i ON experiment_properties_history USING btree (expe_id); + + +-- +-- Name: exprh_vuts_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exprh_vuts_fk_i ON experiment_properties_history USING btree (valid_until_timestamp); + + +-- +-- Name: exrelh_data_id_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exrelh_data_id_fk_i ON experiment_relationships_history USING btree (data_id); + + +-- +-- Name: exrelh_main_expe_fk_data_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exrelh_main_expe_fk_data_fk_i ON experiment_relationships_history USING btree (main_expe_id, data_id); + + +-- +-- Name: exrelh_main_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exrelh_main_expe_fk_i ON experiment_relationships_history USING btree (main_expe_id); + + +-- +-- Name: exrelh_main_expe_fk_proj_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exrelh_main_expe_fk_proj_fk_i ON experiment_relationships_history USING btree (main_expe_id, proj_id); + + +-- +-- Name: exrelh_main_expe_fk_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exrelh_main_expe_fk_samp_fk_i ON experiment_relationships_history USING btree (main_expe_id, samp_id); + + +-- +-- Name: exrelh_samp_id_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX exrelh_samp_id_fk_i ON experiment_relationships_history USING btree (samp_id); + + +-- +-- Name: filt_dbin_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX filt_dbin_fk_i ON filters USING btree (dbin_id); + + +-- +-- Name: filt_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX filt_pers_fk_i ON filters USING btree (pers_id_registerer); + + +-- +-- Name: grid_custom_columns_dbin_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX grid_custom_columns_dbin_fk_i ON grid_custom_columns USING btree (dbin_id); + + +-- +-- Name: grid_custom_columns_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX grid_custom_columns_pers_fk_i ON grid_custom_columns USING btree (pers_id_registerer); + + +-- +-- Name: mapr_cvte_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mapr_cvte_fk_i ON material_properties USING btree (cvte_id); + + +-- +-- Name: mapr_mapr_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mapr_mapr_fk_i ON material_properties USING btree (mate_prop_id); + + +-- +-- Name: mapr_mate_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mapr_mate_fk_i ON material_properties USING btree (mate_id); + + +-- +-- Name: mapr_mtpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mapr_mtpt_fk_i ON material_properties USING btree (mtpt_id); + + +-- +-- Name: mapr_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mapr_pers_fk_i ON material_properties USING btree (pers_id_registerer); + + +-- +-- Name: maprh_etpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX maprh_etpt_fk_i ON material_properties_history USING btree (mtpt_id); + + +-- +-- Name: maprh_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX maprh_expe_fk_i ON material_properties_history USING btree (mate_id); + + +-- +-- Name: maprh_vuts_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX maprh_vuts_fk_i ON material_properties_history USING btree (valid_until_timestamp); + + +-- +-- Name: mate_maty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mate_maty_fk_i ON materials USING btree (maty_id); + + +-- +-- Name: mate_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mate_pers_fk_i ON materials USING btree (pers_id_registerer); + + +-- +-- Name: metaproject_assignments_all_data_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaproject_assignments_all_data_fk_i ON metaproject_assignments_all USING btree (data_id); + + +-- +-- Name: metaproject_assignments_all_del_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaproject_assignments_all_del_fk_i ON metaproject_assignments_all USING btree (del_id); + + +-- +-- Name: metaproject_assignments_all_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaproject_assignments_all_expe_fk_i ON metaproject_assignments_all USING btree (expe_id); + + +-- +-- Name: metaproject_assignments_all_mate_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaproject_assignments_all_mate_fk_i ON metaproject_assignments_all USING btree (mate_id); + + +-- +-- Name: metaproject_assignments_all_mepr_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaproject_assignments_all_mepr_fk_i ON metaproject_assignments_all USING btree (mepr_id); + + +-- +-- Name: metaproject_assignments_all_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaproject_assignments_all_samp_fk_i ON metaproject_assignments_all USING btree (samp_id); + + +-- +-- Name: metaprojects_name_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaprojects_name_i ON metaprojects USING btree (name); + + +-- +-- Name: metaprojects_name_owner_uk; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE UNIQUE INDEX metaprojects_name_owner_uk ON metaprojects USING btree (lower((name)::text), owner); + + +-- +-- Name: metaprojects_owner_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX metaprojects_owner_fk_i ON metaprojects USING btree (owner); + + +-- +-- Name: mtpt_maty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mtpt_maty_fk_i ON material_type_property_types USING btree (maty_id); + + +-- +-- Name: mtpt_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mtpt_pers_fk_i ON material_type_property_types USING btree (pers_id_registerer); + + +-- +-- Name: mtpt_prty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX mtpt_prty_fk_i ON material_type_property_types USING btree (prty_id); + + +-- +-- Name: pers_is_active_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX pers_is_active_i ON persons USING btree (is_active); + + +-- +-- Name: pers_space_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX pers_space_fk_i ON persons USING btree (space_id); + + +-- +-- Name: proj_pers_fk_i_leader; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX proj_pers_fk_i_leader ON projects USING btree (pers_id_leader); + + +-- +-- Name: proj_pers_fk_i_registerer; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX proj_pers_fk_i_registerer ON projects USING btree (pers_id_registerer); + + +-- +-- Name: proj_space_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX proj_space_fk_i ON projects USING btree (space_id); + + +-- +-- Name: prrelh_main_proj_fk_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX prrelh_main_proj_fk_expe_fk_i ON project_relationships_history USING btree (main_proj_id, expe_id); + + +-- +-- Name: prrelh_main_proj_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX prrelh_main_proj_fk_i ON project_relationships_history USING btree (main_proj_id); + + +-- +-- Name: prrelh_main_proj_fk_space_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX prrelh_main_proj_fk_space_fk_i ON project_relationships_history USING btree (main_proj_id, space_id); + + +-- +-- Name: prty_covo_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX prty_covo_fk_i ON property_types USING btree (covo_id); + + +-- +-- Name: prty_daty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX prty_daty_fk_i ON property_types USING btree (daty_id); + + +-- +-- Name: prty_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX prty_pers_fk_i ON property_types USING btree (pers_id_registerer); + + +-- +-- Name: roas_ag_fk_i_grantee; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX roas_ag_fk_i_grantee ON role_assignments USING btree (ag_id_grantee); + + +-- +-- Name: roas_dbin_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX roas_dbin_fk_i ON role_assignments USING btree (dbin_id); + + +-- +-- Name: roas_pers_fk_i_grantee; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX roas_pers_fk_i_grantee ON role_assignments USING btree (pers_id_grantee); + + +-- +-- Name: roas_pers_fk_i_registerer; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX roas_pers_fk_i_registerer ON role_assignments USING btree (pers_id_registerer); + + +-- +-- Name: roas_space_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX roas_space_fk_i ON role_assignments USING btree (space_id); + + +-- +-- Name: samp_code_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samp_code_i ON samples_all USING btree (code); + + +-- +-- Name: samp_del_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samp_del_fk_i ON samples_all USING btree (del_id); + + +-- +-- Name: samp_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samp_expe_fk_i ON samples_all USING btree (expe_id); + + +-- +-- Name: samp_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samp_pers_fk_i ON samples_all USING btree (pers_id_registerer); + + +-- +-- Name: samp_samp_fk_i_part_of; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samp_samp_fk_i_part_of ON samples_all USING btree (samp_id_part_of); + + +-- +-- Name: samp_saty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samp_saty_fk_i ON samples_all USING btree (saty_id); + + +-- +-- Name: samprelh_data_id_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_data_id_fk_i ON sample_relationships_history USING btree (data_id); + + +-- +-- Name: samprelh_main_samp_fk_data_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_main_samp_fk_data_fk_i ON sample_relationships_history USING btree (main_samp_id, data_id); + + +-- +-- Name: samprelh_main_samp_fk_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_main_samp_fk_expe_fk_i ON sample_relationships_history USING btree (main_samp_id, expe_id); + + +-- +-- Name: samprelh_main_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_main_samp_fk_i ON sample_relationships_history USING btree (main_samp_id); + + +-- +-- Name: samprelh_main_samp_fk_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_main_samp_fk_samp_fk_i ON sample_relationships_history USING btree (main_samp_id, samp_id); + + +-- +-- Name: samprelh_main_samp_fk_space_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_main_samp_fk_space_fk_i ON sample_relationships_history USING btree (main_samp_id, space_id); + + +-- +-- Name: samprelh_samp_id_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX samprelh_samp_id_fk_i ON sample_relationships_history USING btree (samp_id); + + +-- +-- Name: sapr_cvte_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sapr_cvte_fk_i ON sample_properties USING btree (cvte_id); + + +-- +-- Name: sapr_mapr_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sapr_mapr_fk_i ON sample_properties USING btree (mate_prop_id); + + +-- +-- Name: sapr_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sapr_pers_fk_i ON sample_properties USING btree (pers_id_registerer); + + +-- +-- Name: sapr_samp_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sapr_samp_fk_i ON sample_properties USING btree (samp_id); + + +-- +-- Name: sapr_stpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sapr_stpt_fk_i ON sample_properties USING btree (stpt_id); + + +-- +-- Name: saprh_etpt_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX saprh_etpt_fk_i ON sample_properties_history USING btree (stpt_id); + + +-- +-- Name: saprh_expe_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX saprh_expe_fk_i ON sample_properties_history USING btree (samp_id); + + +-- +-- Name: saprh_vuts_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX saprh_vuts_fk_i ON sample_properties_history USING btree (valid_until_timestamp); + + +-- +-- Name: sare_data_fk_i_child; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sare_data_fk_i_child ON sample_relationships_all USING btree (sample_id_child); + + +-- +-- Name: sare_data_fk_i_parent; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sare_data_fk_i_parent ON sample_relationships_all USING btree (sample_id_parent); + + +-- +-- Name: sare_data_fk_i_relationship; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sare_data_fk_i_relationship ON sample_relationships_all USING btree (relationship_id); + + +-- +-- Name: sare_del_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX sare_del_fk_i ON sample_relationships_all USING btree (del_id); + + +-- +-- Name: script_dbin_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX script_dbin_fk_i ON scripts USING btree (dbin_id); + + +-- +-- Name: script_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX script_pers_fk_i ON scripts USING btree (pers_id_registerer); + + +-- +-- Name: space_dbin_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX space_dbin_fk_i ON spaces USING btree (dbin_id); + + +-- +-- Name: space_pers_registered_by_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX space_pers_registered_by_fk_i ON spaces USING btree (pers_id_registerer); + + +-- +-- Name: stpt_pers_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX stpt_pers_fk_i ON sample_type_property_types USING btree (pers_id_registerer); + + +-- +-- Name: stpt_prty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX stpt_prty_fk_i ON sample_type_property_types USING btree (prty_id); + + +-- +-- Name: stpt_saty_fk_i; Type: INDEX; Schema: public; Owner: -; Tablespace: +-- + +CREATE INDEX stpt_saty_fk_i ON sample_type_property_types USING btree (saty_id); + + +-- +-- Name: data_all; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_all AS ON DELETE TO data DO INSTEAD DELETE FROM data_all WHERE ((data_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: data_container_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_container_delete AS ON DELETE TO data_all WHERE (old.ctnr_id IS NOT NULL) DO UPDATE data_set_relationships_history SET valid_until_timestamp = now() WHERE (((((data_set_relationships_history.main_data_id)::bigint = (old.ctnr_id)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) AND ((data_set_relationships_history.relation_type)::text = 'CONTAINER'::text)); + + +-- +-- Name: data_container_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_container_insert AS ON INSERT TO data_all WHERE (new.ctnr_id IS NOT NULL) DO (INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.ctnr_id, 'CONTAINER'::text, new.id, new.code, new.pers_id_modifier, new.modification_timestamp); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.id, 'CONTAINED'::text, new.ctnr_id, (SELECT data_all.code FROM data_all WHERE ((data_all.id)::bigint = (new.ctnr_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: data_container_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_container_remove_update AS ON UPDATE TO data_all WHERE ((old.ctnr_id IS NOT NULL) AND (new.ctnr_id IS NULL)) DO UPDATE data_set_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((((data_set_relationships_history.main_data_id)::bigint = (old.ctnr_id)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) AND ((data_set_relationships_history.relation_type)::text = 'CONTAINER'::text)) OR (((((data_set_relationships_history.main_data_id)::bigint = (old.id)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.ctnr_id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) AND ((data_set_relationships_history.relation_type)::text = 'CONTAINED'::text))); + + +-- +-- Name: data_deleted_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_deleted_delete AS ON DELETE TO data_deleted DO INSTEAD DELETE FROM data_all WHERE ((data_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: data_deleted_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_deleted_update AS ON UPDATE TO data_deleted DO INSTEAD UPDATE data_all SET del_id = new.del_id, orig_del = new.orig_del, modification_timestamp = new.modification_timestamp, version = new.version WHERE ((data_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: data_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_insert AS ON INSERT TO data DO INSTEAD INSERT INTO data_all (id, code, ctnr_id, ctnr_order, del_id, orig_del, expe_id, dast_id, data_producer_code, dsty_id, is_derived, is_placeholder, is_valid, modification_timestamp, pers_id_registerer, pers_id_modifier, production_timestamp, registration_timestamp, samp_id, version) VALUES (new.id, new.code, new.ctnr_id, new.ctnr_order, new.del_id, new.orig_del, new.expe_id, new.dast_id, new.data_producer_code, new.dsty_id, new.is_derived, new.is_placeholder, new.is_valid, new.modification_timestamp, new.pers_id_registerer, new.pers_id_modifier, new.production_timestamp, new.registration_timestamp, new.samp_id, new.version); + + +-- +-- Name: data_parent_child_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_parent_child_delete AS ON DELETE TO data_set_relationships_all WHERE (old.del_id IS NULL) DO UPDATE data_set_relationships_history SET valid_until_timestamp = now() WHERE (((((data_set_relationships_history.main_data_id)::bigint = (old.data_id_parent)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.data_id_child)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) OR ((((data_set_relationships_history.main_data_id)::bigint = (old.data_id_child)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.data_id_parent)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL))); + + +-- +-- Name: data_parent_child_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_parent_child_insert AS ON INSERT TO data_set_relationships_all WHERE (new.del_id IS NULL) DO (INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.data_id_parent, 'PARENT'::text, new.data_id_child, (SELECT data_all.code FROM data_all WHERE ((data_all.id)::bigint = (new.data_id_child)::bigint)), new.pers_id_author, new.modification_timestamp); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.data_id_child, 'CHILD'::text, new.data_id_parent, (SELECT data_all.code FROM data_all WHERE ((data_all.id)::bigint = (new.data_id_parent)::bigint)), new.pers_id_author, new.modification_timestamp); ); + + +-- +-- Name: data_parent_child_revert_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_parent_child_revert_update AS ON UPDATE TO data_set_relationships_all WHERE ((old.del_id IS NOT NULL) AND (new.del_id IS NULL)) DO (INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.data_id_parent, 'PARENT'::text, new.data_id_child, (SELECT data_all.code FROM data_all WHERE ((data_all.id)::bigint = (new.data_id_child)::bigint)), new.pers_id_author, new.modification_timestamp); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.data_id_child, 'CHILD'::text, new.data_id_parent, (SELECT data_all.code FROM data_all WHERE ((data_all.id)::bigint = (new.data_id_parent)::bigint)), new.pers_id_author, new.modification_timestamp); ); + + +-- +-- Name: data_parent_child_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_parent_child_update AS ON UPDATE TO data_set_relationships_all WHERE ((new.del_id IS NOT NULL) AND (old.del_id IS NULL)) DO UPDATE data_set_relationships_history SET valid_until_timestamp = now() WHERE (((((data_set_relationships_history.main_data_id)::bigint = (old.data_id_parent)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.data_id_child)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) OR ((((data_set_relationships_history.main_data_id)::bigint = (old.data_id_child)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.data_id_parent)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL))); + + +-- +-- Name: data_set_properties_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_set_properties_delete AS ON DELETE TO data_set_properties WHERE (((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) OR (old.cvte_id IS NOT NULL)) OR (old.mate_prop_id IS NOT NULL)) AND ((SELECT data_all.del_id FROM data_all WHERE ((data_all.id)::bigint = (old.ds_id)::bigint)) IS NULL)) DO INSERT INTO data_set_properties_history (id, ds_id, dstpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('data_set_property_id_seq'::regclass), old.ds_id, old.dstpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: data_set_properties_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_set_properties_update AS ON UPDATE TO data_set_properties WHERE (((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) AND ((old.value)::text <> (new.value)::text)) OR ((old.cvte_id IS NOT NULL) AND ((old.cvte_id)::bigint <> (new.cvte_id)::bigint))) OR ((old.mate_prop_id IS NOT NULL) AND ((old.mate_prop_id)::bigint <> (new.mate_prop_id)::bigint))) DO INSERT INTO data_set_properties_history (id, ds_id, dstpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('data_set_property_id_seq'::regclass), old.ds_id, old.dstpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: data_set_relationships_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_set_relationships_delete AS ON DELETE TO data_set_relationships DO INSTEAD DELETE FROM data_set_relationships_all WHERE (((data_set_relationships_all.data_id_parent)::bigint = (old.data_id_parent)::bigint) AND ((data_set_relationships_all.data_id_child)::bigint = (old.data_id_child)::bigint)); + + +-- +-- Name: data_set_relationships_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_set_relationships_insert AS ON INSERT TO data_set_relationships DO INSTEAD INSERT INTO data_set_relationships_all (data_id_parent, data_id_child, pers_id_author, registration_timestamp, modification_timestamp) VALUES (new.data_id_parent, new.data_id_child, new.pers_id_author, new.registration_timestamp, new.modification_timestamp); + + +-- +-- Name: data_set_relationships_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_set_relationships_update AS ON UPDATE TO data_set_relationships DO INSTEAD UPDATE data_set_relationships_all SET data_id_parent = new.data_id_parent, data_id_child = new.data_id_child, del_id = new.del_id, pers_id_author = new.pers_id_author, registration_timestamp = new.registration_timestamp, modification_timestamp = new.modification_timestamp WHERE (((data_set_relationships_all.data_id_parent)::bigint = (new.data_id_parent)::bigint) AND ((data_set_relationships_all.data_id_child)::bigint = (new.data_id_child)::bigint)); + + +-- +-- Name: data_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE data_update AS ON UPDATE TO data DO INSTEAD UPDATE data_all SET code = new.code, ctnr_id = new.ctnr_id, ctnr_order = new.ctnr_order, del_id = new.del_id, orig_del = new.orig_del, expe_id = new.expe_id, dast_id = new.dast_id, data_producer_code = new.data_producer_code, dsty_id = new.dsty_id, is_derived = new.is_derived, is_placeholder = new.is_placeholder, is_valid = new.is_valid, modification_timestamp = new.modification_timestamp, pers_id_registerer = new.pers_id_registerer, pers_id_modifier = new.pers_id_modifier, production_timestamp = new.production_timestamp, registration_timestamp = new.registration_timestamp, samp_id = new.samp_id, version = new.version WHERE ((data_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: dataset_container_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_container_update AS ON UPDATE TO data_all WHERE ((((old.ctnr_id)::bigint <> (new.ctnr_id)::bigint) OR (old.ctnr_id IS NULL)) AND (new.ctnr_id IS NOT NULL)) DO (UPDATE data_set_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((((data_set_relationships_history.main_data_id)::bigint = (old.ctnr_id)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) AND ((data_set_relationships_history.relation_type)::text = 'CONTAINER'::text)) OR (((((data_set_relationships_history.main_data_id)::bigint = (old.id)::bigint) AND ((data_set_relationships_history.data_id)::bigint = (old.ctnr_id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)) AND ((data_set_relationships_history.relation_type)::text = 'CONTAINED'::text))); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.ctnr_id, 'CONTAINER'::text, new.id, new.code, new.pers_id_modifier, new.modification_timestamp); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.id, 'CONTAINED'::text, new.ctnr_id, (SELECT data_all.code FROM data_all WHERE ((data_all.id)::bigint = (new.ctnr_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: dataset_experiment_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_experiment_delete AS ON DELETE TO data_all WHERE ((old.expe_id IS NOT NULL) AND (old.samp_id IS NULL)) DO UPDATE experiment_relationships_history SET valid_until_timestamp = now() WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.expe_id)::bigint) AND ((experiment_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); + + +-- +-- Name: dataset_experiment_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_experiment_insert AS ON INSERT TO data_all WHERE ((new.expe_id IS NOT NULL) AND (new.samp_id IS NULL)) DO (INSERT INTO experiment_relationships_history (id, main_expe_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('experiment_relationships_history_id_seq'::regclass), new.expe_id, 'OWNER'::text, new.id, new.code, new.pers_id_modifier, new.modification_timestamp); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, expe_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.expe_id, (SELECT experiments_all.perm_id FROM experiments_all WHERE ((experiments_all.id)::bigint = (new.expe_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: dataset_experiment_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_experiment_remove_update AS ON UPDATE TO data_all WHERE ((old.samp_id IS NULL) AND (new.samp_id IS NOT NULL)) DO (UPDATE experiment_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.expe_id)::bigint) AND ((experiment_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); UPDATE data_set_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((data_set_relationships_history.main_data_id)::bigint = (old.id)::bigint) AND ((data_set_relationships_history.expe_id)::bigint = (old.expe_id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)); ); + + +-- +-- Name: dataset_experiment_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_experiment_update AS ON UPDATE TO data_all WHERE ((((old.expe_id)::bigint <> (new.expe_id)::bigint) OR (old.samp_id IS NOT NULL)) AND (new.samp_id IS NULL)) DO (UPDATE experiment_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.expe_id)::bigint) AND ((experiment_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO experiment_relationships_history (id, main_expe_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('experiment_relationships_history_id_seq'::regclass), new.expe_id, 'OWNER'::text, new.id, new.code, new.pers_id_modifier, new.modification_timestamp); UPDATE data_set_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((data_set_relationships_history.main_data_id)::bigint = (old.id)::bigint) AND ((data_set_relationships_history.expe_id)::bigint = (old.expe_id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, expe_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.expe_id, (SELECT experiments_all.perm_id FROM experiments_all WHERE ((experiments_all.id)::bigint = (new.expe_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: dataset_sample_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_sample_delete AS ON DELETE TO data_all WHERE (old.samp_id IS NOT NULL) DO UPDATE sample_relationships_history SET valid_until_timestamp = now() WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.samp_id)::bigint) AND ((sample_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); + + +-- +-- Name: dataset_sample_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_sample_insert AS ON INSERT TO data_all WHERE (new.samp_id IS NOT NULL) DO (INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.samp_id, 'OWNER'::text, new.id, new.code, new.pers_id_modifier, new.modification_timestamp); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.samp_id, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.samp_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: dataset_sample_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_sample_remove_update AS ON UPDATE TO data_all WHERE ((old.samp_id IS NOT NULL) AND (new.samp_id IS NULL)) DO (UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.samp_id)::bigint) AND ((sample_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); UPDATE data_set_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((data_set_relationships_history.main_data_id)::bigint = (old.id)::bigint) AND ((data_set_relationships_history.samp_id)::bigint = (old.samp_id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)); ); + + +-- +-- Name: dataset_sample_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE dataset_sample_update AS ON UPDATE TO data_all WHERE ((((old.samp_id)::bigint <> (new.samp_id)::bigint) OR (old.samp_id IS NULL)) AND (new.samp_id IS NOT NULL)) DO (UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.samp_id)::bigint) AND ((sample_relationships_history.data_id)::bigint = (old.id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, data_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.samp_id, 'OWNER'::text, new.id, new.code, new.pers_id_modifier, new.modification_timestamp); UPDATE data_set_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((data_set_relationships_history.main_data_id)::bigint = (old.id)::bigint) AND ((data_set_relationships_history.samp_id)::bigint = (old.samp_id)::bigint)) AND (data_set_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO data_set_relationships_history (id, main_data_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('data_set_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.samp_id, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.samp_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: experiment_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_delete AS ON DELETE TO experiments DO INSTEAD DELETE FROM experiments_all WHERE ((experiments_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: experiment_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_insert AS ON INSERT TO experiments DO INSTEAD INSERT INTO experiments_all (id, code, del_id, orig_del, exty_id, is_public, modification_timestamp, perm_id, pers_id_registerer, pers_id_modifier, proj_id, registration_timestamp, version) VALUES (new.id, new.code, new.del_id, new.orig_del, new.exty_id, new.is_public, new.modification_timestamp, new.perm_id, new.pers_id_registerer, new.pers_id_modifier, new.proj_id, new.registration_timestamp, new.version); + + +-- +-- Name: experiment_project_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_project_delete AS ON DELETE TO experiments_all WHERE (old.proj_id IS NOT NULL) DO UPDATE project_relationships_history SET valid_until_timestamp = now() WHERE ((((project_relationships_history.main_proj_id)::bigint = (old.proj_id)::bigint) AND ((project_relationships_history.expe_id)::bigint = (old.id)::bigint)) AND (project_relationships_history.valid_until_timestamp IS NULL)); + + +-- +-- Name: experiment_project_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_project_insert AS ON INSERT TO experiments_all WHERE (new.proj_id IS NOT NULL) DO (INSERT INTO project_relationships_history (id, main_proj_id, relation_type, expe_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('project_relationships_history_id_seq'::regclass), new.proj_id, 'OWNER'::text, new.id, new.perm_id, new.pers_id_modifier, new.modification_timestamp); INSERT INTO experiment_relationships_history (id, main_expe_id, relation_type, proj_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('experiment_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.proj_id, (SELECT projects.code FROM projects WHERE ((projects.id)::bigint = (new.proj_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: experiment_project_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_project_remove_update AS ON UPDATE TO experiments_all WHERE ((old.proj_id IS NOT NULL) AND (new.proj_id IS NULL)) DO (UPDATE project_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((project_relationships_history.main_proj_id)::bigint = (old.proj_id)::bigint) AND ((project_relationships_history.expe_id)::bigint = (old.id)::bigint)) AND (project_relationships_history.valid_until_timestamp IS NULL)); UPDATE experiment_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.id)::bigint) AND ((experiment_relationships_history.proj_id)::bigint = (old.proj_id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); ); + + +-- +-- Name: experiment_project_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_project_update AS ON UPDATE TO experiments_all WHERE ((((old.proj_id)::bigint <> (new.proj_id)::bigint) OR (old.proj_id IS NULL)) AND (new.proj_id IS NOT NULL)) DO (UPDATE project_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((project_relationships_history.main_proj_id)::bigint = (old.proj_id)::bigint) AND ((project_relationships_history.expe_id)::bigint = (old.id)::bigint)) AND (project_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO project_relationships_history (id, main_proj_id, relation_type, expe_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('project_relationships_history_id_seq'::regclass), new.proj_id, 'OWNER'::text, new.id, new.perm_id, new.pers_id_modifier, new.modification_timestamp); UPDATE experiment_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.id)::bigint) AND ((experiment_relationships_history.proj_id)::bigint = (old.proj_id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO experiment_relationships_history (id, main_expe_id, relation_type, proj_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('experiment_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.proj_id, (SELECT projects.code FROM projects WHERE ((projects.id)::bigint = (new.proj_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: experiment_properties_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_properties_delete AS ON DELETE TO experiment_properties WHERE ((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) OR (old.cvte_id IS NOT NULL)) OR (old.mate_prop_id IS NOT NULL)) DO INSERT INTO experiment_properties_history (id, expe_id, etpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('experiment_property_id_seq'::regclass), old.expe_id, old.etpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: experiment_properties_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_properties_update AS ON UPDATE TO experiment_properties WHERE (((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) AND ((old.value)::text <> (new.value)::text)) OR ((old.cvte_id IS NOT NULL) AND ((old.cvte_id)::bigint <> (new.cvte_id)::bigint))) OR ((old.mate_prop_id IS NOT NULL) AND ((old.mate_prop_id)::bigint <> (new.mate_prop_id)::bigint))) DO INSERT INTO experiment_properties_history (id, expe_id, etpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('experiment_property_id_seq'::regclass), old.expe_id, old.etpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: experiment_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiment_update AS ON UPDATE TO experiments DO INSTEAD UPDATE experiments_all SET code = new.code, del_id = new.del_id, orig_del = new.orig_del, exty_id = new.exty_id, is_public = new.is_public, modification_timestamp = new.modification_timestamp, perm_id = new.perm_id, pers_id_registerer = new.pers_id_registerer, pers_id_modifier = new.pers_id_modifier, proj_id = new.proj_id, registration_timestamp = new.registration_timestamp, version = new.version WHERE ((experiments_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: experiments_deleted_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiments_deleted_delete AS ON DELETE TO experiments_deleted DO INSTEAD DELETE FROM experiments_all WHERE ((experiments_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: experiments_deleted_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE experiments_deleted_update AS ON UPDATE TO experiments_deleted DO INSTEAD UPDATE experiments_all SET del_id = new.del_id, orig_del = new.orig_del, modification_timestamp = new.modification_timestamp, version = new.version WHERE ((experiments_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: material_properties_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE material_properties_delete AS ON DELETE TO material_properties WHERE ((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) OR (old.cvte_id IS NOT NULL)) OR (old.mate_prop_id IS NOT NULL)) DO INSERT INTO material_properties_history (id, mate_id, mtpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('material_property_id_seq'::regclass), old.mate_id, old.mtpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: material_properties_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE material_properties_update AS ON UPDATE TO material_properties WHERE (((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) AND ((old.value)::text <> (new.value)::text)) OR ((old.cvte_id IS NOT NULL) AND ((old.cvte_id)::bigint <> (new.cvte_id)::bigint))) OR ((old.mate_prop_id IS NOT NULL) AND ((old.mate_prop_id)::bigint <> (new.mate_prop_id)::bigint))) DO INSERT INTO material_properties_history (id, mate_id, mtpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('material_property_id_seq'::regclass), old.mate_id, old.mtpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: metaproject_assignments_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE metaproject_assignments_delete AS ON DELETE TO metaproject_assignments DO INSTEAD DELETE FROM metaproject_assignments_all WHERE ((metaproject_assignments_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: metaproject_assignments_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE metaproject_assignments_insert AS ON INSERT TO metaproject_assignments DO INSTEAD INSERT INTO metaproject_assignments_all (id, mepr_id, expe_id, samp_id, data_id, mate_id, del_id, creation_date) VALUES (new.id, new.mepr_id, new.expe_id, new.samp_id, new.data_id, new.mate_id, new.del_id, new.creation_date); + + +-- +-- Name: metaproject_assignments_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE metaproject_assignments_update AS ON UPDATE TO metaproject_assignments DO INSTEAD UPDATE metaproject_assignments_all SET id = new.id, mepr_id = new.mepr_id, expe_id = new.expe_id, samp_id = new.samp_id, data_id = new.data_id, mate_id = new.mate_id, del_id = new.del_id, creation_date = new.creation_date WHERE ((metaproject_assignments_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: project_space_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE project_space_insert AS ON INSERT TO projects WHERE (new.space_id IS NOT NULL) DO INSERT INTO project_relationships_history (id, main_proj_id, relation_type, space_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('project_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.space_id, (SELECT spaces.code FROM spaces WHERE ((spaces.id)::bigint = (new.space_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); + + +-- +-- Name: project_space_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE project_space_remove_update AS ON UPDATE TO projects WHERE ((old.space_id IS NOT NULL) AND (new.space_id IS NULL)) DO UPDATE project_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((project_relationships_history.main_proj_id)::bigint = (old.id)::bigint) AND ((project_relationships_history.space_id)::bigint = (old.space_id)::bigint)) AND (project_relationships_history.valid_until_timestamp IS NULL)); + + +-- +-- Name: project_space_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE project_space_update AS ON UPDATE TO projects WHERE ((((old.space_id)::bigint <> (new.space_id)::bigint) OR (old.space_id IS NULL)) AND (new.space_id IS NOT NULL)) DO (UPDATE project_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((project_relationships_history.main_proj_id)::bigint = (old.id)::bigint) AND ((project_relationships_history.space_id)::bigint = (old.space_id)::bigint)) AND (project_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO project_relationships_history (id, main_proj_id, relation_type, space_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('project_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.space_id, (SELECT spaces.code FROM spaces WHERE ((spaces.id)::bigint = (new.space_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: sample_container_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_container_delete AS ON DELETE TO samples_all WHERE (old.samp_id_part_of IS NOT NULL) DO UPDATE sample_relationships_history SET valid_until_timestamp = now() WHERE (((((sample_relationships_history.main_samp_id)::bigint = (old.samp_id_part_of)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) AND ((sample_relationships_history.relation_type)::text = 'CONTAINER'::text)); + + +-- +-- Name: sample_container_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_container_insert AS ON INSERT TO samples_all WHERE (new.samp_id_part_of IS NOT NULL) DO (INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.samp_id_part_of, 'CONTAINER'::text, new.id, new.perm_id, new.pers_id_modifier, new.modification_timestamp); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.id, 'CONTAINED'::text, new.samp_id_part_of, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.samp_id_part_of)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: sample_container_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_container_remove_update AS ON UPDATE TO samples_all WHERE ((old.samp_id_part_of IS NOT NULL) AND (new.samp_id_part_of IS NULL)) DO UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((((sample_relationships_history.main_samp_id)::bigint = (old.samp_id_part_of)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) AND ((sample_relationships_history.relation_type)::text = 'CONTAINER'::text)) OR (((((sample_relationships_history.main_samp_id)::bigint = (old.id)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.samp_id_part_of)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) AND ((sample_relationships_history.relation_type)::text = 'CONTAINED'::text))); + + +-- +-- Name: sample_container_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_container_update AS ON UPDATE TO samples_all WHERE ((((old.samp_id_part_of)::bigint <> (new.samp_id_part_of)::bigint) OR (old.samp_id_part_of IS NULL)) AND (new.samp_id_part_of IS NOT NULL)) DO (UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((((sample_relationships_history.main_samp_id)::bigint = (old.samp_id_part_of)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) AND ((sample_relationships_history.relation_type)::text = 'CONTAINER'::text)) OR (((((sample_relationships_history.main_samp_id)::bigint = (old.id)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.samp_id_part_of)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) AND ((sample_relationships_history.relation_type)::text = 'CONTAINED'::text))); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.samp_id_part_of, 'CONTAINER'::text, new.id, new.perm_id, new.pers_id_modifier, new.modification_timestamp); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.id, 'CONTAINED'::text, new.samp_id_part_of, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.samp_id_part_of)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: sample_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_delete AS ON DELETE TO samples DO INSTEAD DELETE FROM samples_all WHERE ((samples_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: sample_deleted_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_deleted_delete AS ON DELETE TO samples_deleted DO INSTEAD DELETE FROM samples_all WHERE ((samples_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: sample_deleted_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_deleted_update AS ON UPDATE TO samples_deleted DO INSTEAD UPDATE samples_all SET del_id = new.del_id, orig_del = new.orig_del, modification_timestamp = new.modification_timestamp, version = new.version WHERE ((samples_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: sample_experiment_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_experiment_delete AS ON DELETE TO samples_all WHERE (old.expe_id IS NOT NULL) DO UPDATE experiment_relationships_history SET valid_until_timestamp = now() WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.expe_id)::bigint) AND ((experiment_relationships_history.samp_id)::bigint = (old.id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); + + +-- +-- Name: sample_experiment_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_experiment_insert AS ON INSERT TO samples_all WHERE (new.expe_id IS NOT NULL) DO (INSERT INTO experiment_relationships_history (id, main_expe_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('experiment_relationships_history_id_seq'::regclass), new.expe_id, 'OWNER'::text, new.id, new.perm_id, new.pers_id_modifier, new.modification_timestamp); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, expe_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.expe_id, (SELECT experiments_all.perm_id FROM experiments_all WHERE ((experiments_all.id)::bigint = (new.expe_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: sample_experiment_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_experiment_remove_update AS ON UPDATE TO samples_all WHERE ((old.expe_id IS NOT NULL) AND (new.expe_id IS NULL)) DO (UPDATE experiment_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.expe_id)::bigint) AND ((experiment_relationships_history.samp_id)::bigint = (old.id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.id)::bigint) AND ((sample_relationships_history.expe_id)::bigint = (old.expe_id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); ); + + +-- +-- Name: sample_experiment_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_experiment_update AS ON UPDATE TO samples_all WHERE ((((old.expe_id)::bigint <> (new.expe_id)::bigint) OR (old.expe_id IS NULL)) AND (new.expe_id IS NOT NULL)) DO (UPDATE experiment_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((experiment_relationships_history.main_expe_id)::bigint = (old.expe_id)::bigint) AND ((experiment_relationships_history.samp_id)::bigint = (old.id)::bigint)) AND (experiment_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO experiment_relationships_history (id, main_expe_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('experiment_relationships_history_id_seq'::regclass), new.expe_id, 'OWNER'::text, new.id, new.perm_id, new.pers_id_modifier, new.modification_timestamp); UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.id)::bigint) AND ((sample_relationships_history.expe_id)::bigint = (old.expe_id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, expe_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.expe_id, (SELECT experiments_all.perm_id FROM experiments_all WHERE ((experiments_all.id)::bigint = (new.expe_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: sample_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_insert AS ON INSERT TO samples DO INSTEAD INSERT INTO samples_all (id, code, dbin_id, del_id, orig_del, expe_id, modification_timestamp, perm_id, pers_id_registerer, pers_id_modifier, registration_timestamp, samp_id_part_of, saty_id, space_id, version) VALUES (new.id, new.code, new.dbin_id, new.del_id, new.orig_del, new.expe_id, new.modification_timestamp, new.perm_id, new.pers_id_registerer, new.pers_id_modifier, new.registration_timestamp, new.samp_id_part_of, new.saty_id, new.space_id, new.version); + + +-- +-- Name: sample_parent_child_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_parent_child_delete AS ON DELETE TO sample_relationships_all WHERE (old.del_id IS NULL) DO UPDATE sample_relationships_history SET valid_until_timestamp = now() WHERE (((((sample_relationships_history.main_samp_id)::bigint = (old.sample_id_parent)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.sample_id_child)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) OR ((((sample_relationships_history.main_samp_id)::bigint = (old.sample_id_child)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.sample_id_parent)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL))); + + +-- +-- Name: sample_parent_child_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_parent_child_insert AS ON INSERT TO sample_relationships_all WHERE (new.del_id IS NULL) DO (INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.sample_id_parent, 'PARENT'::text, new.sample_id_child, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.sample_id_child)::bigint)), new.pers_id_author, new.modification_timestamp); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.sample_id_child, 'CHILD'::text, new.sample_id_parent, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.sample_id_parent)::bigint)), new.pers_id_author, new.modification_timestamp); ); + + +-- +-- Name: sample_parent_child_revert_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_parent_child_revert_update AS ON UPDATE TO sample_relationships_all WHERE ((new.del_id IS NULL) AND (old.del_id IS NOT NULL)) DO (INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.sample_id_parent, 'PARENT'::text, new.sample_id_child, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.sample_id_child)::bigint)), new.pers_id_author, new.modification_timestamp); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, samp_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.sample_id_child, 'CHILD'::text, new.sample_id_parent, (SELECT samples_all.perm_id FROM samples_all WHERE ((samples_all.id)::bigint = (new.sample_id_parent)::bigint)), new.pers_id_author, new.modification_timestamp); ); + + +-- +-- Name: sample_parent_child_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_parent_child_update AS ON UPDATE TO sample_relationships_all WHERE ((new.del_id IS NOT NULL) AND (old.del_id IS NULL)) DO UPDATE sample_relationships_history SET valid_until_timestamp = now() WHERE (((((sample_relationships_history.main_samp_id)::bigint = (old.sample_id_parent)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.sample_id_child)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)) OR ((((sample_relationships_history.main_samp_id)::bigint = (old.sample_id_child)::bigint) AND ((sample_relationships_history.samp_id)::bigint = (old.sample_id_parent)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL))); + + +-- +-- Name: sample_properties_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_properties_delete AS ON DELETE TO sample_properties WHERE (((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) OR (old.cvte_id IS NOT NULL)) OR (old.mate_prop_id IS NOT NULL)) AND ((SELECT samples_all.del_id FROM samples_all WHERE ((samples_all.id)::bigint = (old.samp_id)::bigint)) IS NULL)) DO INSERT INTO sample_properties_history (id, samp_id, stpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('sample_property_id_seq'::regclass), old.samp_id, old.stpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: sample_properties_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_properties_update AS ON UPDATE TO sample_properties WHERE (((((old.value IS NOT NULL) AND (decode("substring"((old.value)::text, 1, 1), 'escape'::text) <> '\xefbfbd'::bytea)) AND ((old.value)::text <> (new.value)::text)) OR ((old.cvte_id IS NOT NULL) AND ((old.cvte_id)::bigint <> (new.cvte_id)::bigint))) OR ((old.mate_prop_id IS NOT NULL) AND ((old.mate_prop_id)::bigint <> (new.mate_prop_id)::bigint))) DO INSERT INTO sample_properties_history (id, samp_id, stpt_id, value, vocabulary_term, material, pers_id_author, valid_from_timestamp, valid_until_timestamp) VALUES (nextval('sample_property_id_seq'::regclass), old.samp_id, old.stpt_id, old.value, (SELECT ((((t.code)::text || ' ['::text) || (v.code)::text) || ']'::text) FROM (controlled_vocabulary_terms t JOIN controlled_vocabularies v ON (((t.covo_id)::bigint = (v.id)::bigint))) WHERE ((t.id)::bigint = (old.cvte_id)::bigint)), (SELECT ((((m.code)::text || ' ['::text) || (mt.code)::text) || ']'::text) FROM (materials m JOIN material_types mt ON (((m.maty_id)::bigint = (mt.id)::bigint))) WHERE ((m.id)::bigint = (old.mate_prop_id)::bigint)), old.pers_id_author, old.modification_timestamp, now()); + + +-- +-- Name: sample_relationships_delete; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_relationships_delete AS ON DELETE TO sample_relationships DO INSTEAD DELETE FROM sample_relationships_all WHERE ((sample_relationships_all.id)::bigint = (old.id)::bigint); + + +-- +-- Name: sample_relationships_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_relationships_insert AS ON INSERT TO sample_relationships DO INSTEAD INSERT INTO sample_relationships_all (id, sample_id_parent, relationship_id, sample_id_child, pers_id_author, registration_timestamp, modification_timestamp) VALUES (new.id, new.sample_id_parent, new.relationship_id, new.sample_id_child, new.pers_id_author, new.registration_timestamp, new.modification_timestamp); + + +-- +-- Name: sample_relationships_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_relationships_update AS ON UPDATE TO sample_relationships DO INSTEAD UPDATE sample_relationships_all SET sample_id_parent = new.sample_id_parent, relationship_id = new.relationship_id, sample_id_child = new.sample_id_child, del_id = new.del_id, pers_id_author = new.pers_id_author, registration_timestamp = new.registration_timestamp, modification_timestamp = new.modification_timestamp WHERE ((sample_relationships_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: sample_space_insert; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_space_insert AS ON INSERT TO samples_all WHERE ((new.expe_id IS NULL) AND (new.space_id IS NOT NULL)) DO INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, space_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.space_id, (SELECT spaces.code FROM spaces WHERE ((spaces.id)::bigint = (new.space_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); + + +-- +-- Name: sample_space_remove_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_space_remove_update AS ON UPDATE TO samples_all WHERE ((old.space_id IS NOT NULL) AND ((new.space_id IS NULL) OR ((old.expe_id IS NULL) AND (new.expe_id IS NOT NULL)))) DO UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.id)::bigint) AND ((sample_relationships_history.space_id)::bigint = (old.space_id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); + + +-- +-- Name: sample_space_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_space_update AS ON UPDATE TO samples_all WHERE ((((((old.space_id)::bigint <> (new.space_id)::bigint) OR (old.space_id IS NULL)) OR (old.expe_id IS NOT NULL)) AND (new.space_id IS NOT NULL)) AND (new.expe_id IS NULL)) DO (UPDATE sample_relationships_history SET valid_until_timestamp = new.modification_timestamp WHERE ((((sample_relationships_history.main_samp_id)::bigint = (old.id)::bigint) AND ((sample_relationships_history.space_id)::bigint = (old.space_id)::bigint)) AND (sample_relationships_history.valid_until_timestamp IS NULL)); INSERT INTO sample_relationships_history (id, main_samp_id, relation_type, space_id, entity_perm_id, pers_id_author, valid_from_timestamp) VALUES (nextval('sample_relationships_history_id_seq'::regclass), new.id, 'OWNED'::text, new.space_id, (SELECT spaces.code FROM spaces WHERE ((spaces.id)::bigint = (new.space_id)::bigint)), new.pers_id_modifier, new.modification_timestamp); ); + + +-- +-- Name: sample_update; Type: RULE; Schema: public; Owner: - +-- + +CREATE RULE sample_update AS ON UPDATE TO samples DO INSTEAD UPDATE samples_all SET code = new.code, dbin_id = new.dbin_id, del_id = new.del_id, orig_del = new.orig_del, expe_id = new.expe_id, modification_timestamp = new.modification_timestamp, perm_id = new.perm_id, pers_id_registerer = new.pers_id_registerer, pers_id_modifier = new.pers_id_modifier, registration_timestamp = new.registration_timestamp, samp_id_part_of = new.samp_id_part_of, saty_id = new.saty_id, space_id = new.space_id, version = new.version WHERE ((samples_all.id)::bigint = (new.id)::bigint); + + +-- +-- Name: check_created_or_modified_data_set_owner_is_alive; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE CONSTRAINT TRIGGER check_created_or_modified_data_set_owner_is_alive AFTER INSERT OR UPDATE ON data_all DEFERRABLE INITIALLY DEFERRED FOR EACH ROW EXECUTE PROCEDURE check_created_or_modified_data_set_owner_is_alive(); + + +-- +-- Name: check_created_or_modified_sample_owner_is_alive; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE CONSTRAINT TRIGGER check_created_or_modified_sample_owner_is_alive AFTER INSERT OR UPDATE ON samples_all DEFERRABLE INITIALLY DEFERRED FOR EACH ROW EXECUTE PROCEDURE check_created_or_modified_sample_owner_is_alive(); + + +-- +-- Name: check_deletion_consistency_on_experiment_deletion; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE CONSTRAINT TRIGGER check_deletion_consistency_on_experiment_deletion AFTER UPDATE ON experiments_all DEFERRABLE INITIALLY DEFERRED FOR EACH ROW EXECUTE PROCEDURE check_deletion_consistency_on_experiment_deletion(); + + +-- +-- Name: check_deletion_consistency_on_sample_deletion; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE CONSTRAINT TRIGGER check_deletion_consistency_on_sample_deletion AFTER UPDATE ON samples_all DEFERRABLE INITIALLY DEFERRED FOR EACH ROW EXECUTE PROCEDURE check_deletion_consistency_on_sample_deletion(); + + +-- +-- Name: controlled_vocabulary_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER controlled_vocabulary_check BEFORE INSERT OR UPDATE ON property_types FOR EACH ROW EXECUTE PROCEDURE controlled_vocabulary_check(); + + +-- +-- Name: data_set_property_with_material_data_type_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER data_set_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON data_set_properties FOR EACH ROW EXECUTE PROCEDURE data_set_property_with_material_data_type_check(); + + +-- +-- Name: experiment_property_with_material_data_type_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER experiment_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON experiment_properties FOR EACH ROW EXECUTE PROCEDURE experiment_property_with_material_data_type_check(); + + +-- +-- Name: external_data_storage_format_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER external_data_storage_format_check BEFORE INSERT OR UPDATE ON external_data FOR EACH ROW EXECUTE PROCEDURE external_data_storage_format_check(); + + +-- +-- Name: material_property_with_material_data_type_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER material_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON material_properties FOR EACH ROW EXECUTE PROCEDURE material_property_with_material_data_type_check(); + + +-- +-- Name: preserve_deletion_consistency_on_data_set_relationships; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER preserve_deletion_consistency_on_data_set_relationships BEFORE UPDATE ON data_set_relationships_all FOR EACH ROW EXECUTE PROCEDURE preserve_deletion_consistency_on_data_set_relationships(); + + +-- +-- Name: preserve_deletion_consistency_on_sample_relationships; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER preserve_deletion_consistency_on_sample_relationships BEFORE UPDATE ON sample_relationships_all FOR EACH ROW EXECUTE PROCEDURE preserve_deletion_consistency_on_sample_relationships(); + + +-- +-- Name: sample_fill_code_unique_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER sample_fill_code_unique_check BEFORE INSERT OR UPDATE ON samples_all FOR EACH ROW EXECUTE PROCEDURE sample_fill_code_unique_check(); + + +-- +-- Name: sample_fill_subcode_unique_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER sample_fill_subcode_unique_check BEFORE INSERT OR UPDATE ON samples_all FOR EACH ROW EXECUTE PROCEDURE sample_fill_subcode_unique_check(); + + +-- +-- Name: sample_property_with_material_data_type_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER sample_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON sample_properties FOR EACH ROW EXECUTE PROCEDURE sample_property_with_material_data_type_check(); + + +-- +-- Name: sample_type_fill_subcode_unique_check; Type: TRIGGER; Schema: public; Owner: - +-- + +CREATE TRIGGER sample_type_fill_subcode_unique_check AFTER UPDATE ON sample_types FOR EACH ROW EXECUTE PROCEDURE sample_type_fill_subcode_unique_check(); + + +-- +-- Name: ag_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY authorization_groups + ADD CONSTRAINT ag_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: ag_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY authorization_groups + ADD CONSTRAINT ag_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: agp_ag_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY authorization_group_persons + ADD CONSTRAINT agp_ag_fk FOREIGN KEY (ag_id) REFERENCES authorization_groups(id); + + +-- +-- Name: agp_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY authorization_group_persons + ADD CONSTRAINT agp_pers_fk FOREIGN KEY (pers_id) REFERENCES persons(id); + + +-- +-- Name: atta_cont_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_cont_fk FOREIGN KEY (exac_id) REFERENCES attachment_contents(id); + + +-- +-- Name: atta_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id); + + +-- +-- Name: atta_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: atta_proj_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_proj_fk FOREIGN KEY (proj_id) REFERENCES projects(id); + + +-- +-- Name: atta_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY attachments + ADD CONSTRAINT atta_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id); + + +-- +-- Name: covo_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY controlled_vocabularies + ADD CONSTRAINT covo_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: covo_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY controlled_vocabularies + ADD CONSTRAINT covo_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: cvte_covo_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY controlled_vocabulary_terms + ADD CONSTRAINT cvte_covo_fk FOREIGN KEY (covo_id) REFERENCES controlled_vocabularies(id); + + +-- +-- Name: cvte_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY controlled_vocabulary_terms + ADD CONSTRAINT cvte_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: dast_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_stores + ADD CONSTRAINT dast_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: data_ctnr_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_ctnr_fk FOREIGN KEY (ctnr_id) REFERENCES data_all(id); + + +-- +-- Name: data_dast_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_dast_fk FOREIGN KEY (dast_id) REFERENCES data_stores(id); + + +-- +-- Name: data_del_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_del_fk FOREIGN KEY (del_id) REFERENCES deletions(id); + + +-- +-- Name: data_dsty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_dsty_fk FOREIGN KEY (dsty_id) REFERENCES data_set_types(id); + + +-- +-- Name: data_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id); + + +-- +-- Name: data_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: data_pers_fk_mod; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_pers_fk_mod FOREIGN KEY (pers_id_modifier) REFERENCES persons(id); + + +-- +-- Name: data_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_all + ADD CONSTRAINT data_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id); + + +-- +-- Name: data_set_relationships_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_all + ADD CONSTRAINT data_set_relationships_pers_fk FOREIGN KEY (pers_id_author) REFERENCES persons(id); + + +-- +-- Name: datarelh_data_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_history + ADD CONSTRAINT datarelh_data_fk FOREIGN KEY (data_id) REFERENCES data_all(id) ON DELETE SET NULL; + + +-- +-- Name: datarelh_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_history + ADD CONSTRAINT datarelh_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id) ON DELETE SET NULL; + + +-- +-- Name: datarelh_main_data_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_history + ADD CONSTRAINT datarelh_main_data_fk FOREIGN KEY (main_data_id) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: datarelh_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_history + ADD CONSTRAINT datarelh_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id) ON DELETE SET NULL; + + +-- +-- Name: del_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY deletions + ADD CONSTRAINT del_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: dspr_cvte_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_cvte_fk FOREIGN KEY (cvte_id) REFERENCES controlled_vocabulary_terms(id); + + +-- +-- Name: dspr_ds_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_ds_fk FOREIGN KEY (ds_id) REFERENCES data_all(id); + + +-- +-- Name: dspr_dstpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_dstpt_fk FOREIGN KEY (dstpt_id) REFERENCES data_set_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: dspr_mapr_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_mapr_fk FOREIGN KEY (mate_prop_id) REFERENCES materials(id); + + +-- +-- Name: dspr_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties + ADD CONSTRAINT dspr_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: dsprh_ds_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties_history + ADD CONSTRAINT dsprh_ds_fk FOREIGN KEY (ds_id) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: dsprh_dstpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_properties_history + ADD CONSTRAINT dsprh_dstpt_fk FOREIGN KEY (dstpt_id) REFERENCES data_set_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: dsre_data_fk_child; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_all + ADD CONSTRAINT dsre_data_fk_child FOREIGN KEY (data_id_child) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: dsre_data_fk_parent; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_all + ADD CONSTRAINT dsre_data_fk_parent FOREIGN KEY (data_id_parent) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: dsre_del_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_relationships_all + ADD CONSTRAINT dsre_del_fk FOREIGN KEY (del_id) REFERENCES deletions(id); + + +-- +-- Name: dssdst_ds_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_store_service_data_set_types + ADD CONSTRAINT dssdst_ds_fk FOREIGN KEY (data_store_service_id) REFERENCES data_store_services(id) ON DELETE CASCADE; + + +-- +-- Name: dssdst_dst_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_store_service_data_set_types + ADD CONSTRAINT dssdst_dst_fk FOREIGN KEY (data_set_type_id) REFERENCES data_set_types(id) ON DELETE CASCADE; + + +-- +-- Name: dsse_ds_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_store_services + ADD CONSTRAINT dsse_ds_fk FOREIGN KEY (data_store_id) REFERENCES data_stores(id) ON DELETE CASCADE; + + +-- +-- Name: dstpt_dsty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_type_property_types + ADD CONSTRAINT dstpt_dsty_fk FOREIGN KEY (dsty_id) REFERENCES data_set_types(id) ON DELETE CASCADE; + + +-- +-- Name: dstpt_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_type_property_types + ADD CONSTRAINT dstpt_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: dstpt_prty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_type_property_types + ADD CONSTRAINT dstpt_prty_fk FOREIGN KEY (prty_id) REFERENCES property_types(id) ON DELETE CASCADE; + + +-- +-- Name: dstpt_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_type_property_types + ADD CONSTRAINT dstpt_script_fk FOREIGN KEY (script_id) REFERENCES scripts(id); + + +-- +-- Name: dsty_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_types + ADD CONSTRAINT dsty_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: dsty_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY data_set_types + ADD CONSTRAINT dsty_script_fk FOREIGN KEY (validation_script_id) REFERENCES scripts(id); + + +-- +-- Name: edms_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY external_data_management_systems + ADD CONSTRAINT edms_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: etpt_exty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_type_property_types + ADD CONSTRAINT etpt_exty_fk FOREIGN KEY (exty_id) REFERENCES experiment_types(id) ON DELETE CASCADE; + + +-- +-- Name: etpt_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_type_property_types + ADD CONSTRAINT etpt_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: etpt_prty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_type_property_types + ADD CONSTRAINT etpt_prty_fk FOREIGN KEY (prty_id) REFERENCES property_types(id) ON DELETE CASCADE; + + +-- +-- Name: etpt_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_type_property_types + ADD CONSTRAINT etpt_script_fk FOREIGN KEY (script_id) REFERENCES scripts(id); + + +-- +-- Name: evnt_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY events + ADD CONSTRAINT evnt_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: exda_cvte_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_cvte_fk FOREIGN KEY (cvte_id_stor_fmt) REFERENCES controlled_vocabulary_terms(id); + + +-- +-- Name: exda_cvte_stored_on_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_cvte_stored_on_fk FOREIGN KEY (cvte_id_store) REFERENCES controlled_vocabulary_terms(id); + + +-- +-- Name: exda_data_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_data_fk FOREIGN KEY (data_id) REFERENCES data_all(id); + + +-- +-- Name: exda_ffty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_ffty_fk FOREIGN KEY (ffty_id) REFERENCES file_format_types(id); + + +-- +-- Name: exda_loty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY external_data + ADD CONSTRAINT exda_loty_fk FOREIGN KEY (loty_id) REFERENCES locator_types(id); + + +-- +-- Name: expe_del_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_del_fk FOREIGN KEY (del_id) REFERENCES deletions(id); + + +-- +-- Name: expe_exty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_exty_fk FOREIGN KEY (exty_id) REFERENCES experiment_types(id); + + +-- +-- Name: expe_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: expe_pers_fk_mod; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_pers_fk_mod FOREIGN KEY (pers_id_modifier) REFERENCES persons(id); + + +-- +-- Name: expe_proj_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiments_all + ADD CONSTRAINT expe_proj_fk FOREIGN KEY (proj_id) REFERENCES projects(id); + + +-- +-- Name: expr_cvte_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_cvte_fk FOREIGN KEY (cvte_id) REFERENCES controlled_vocabulary_terms(id); + + +-- +-- Name: expr_etpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_etpt_fk FOREIGN KEY (etpt_id) REFERENCES experiment_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: expr_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id); + + +-- +-- Name: expr_mapr_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_mapr_fk FOREIGN KEY (mate_prop_id) REFERENCES materials(id); + + +-- +-- Name: expr_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties + ADD CONSTRAINT expr_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: exprh_etpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties_history + ADD CONSTRAINT exprh_etpt_fk FOREIGN KEY (etpt_id) REFERENCES experiment_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: exprh_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_properties_history + ADD CONSTRAINT exprh_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id) ON DELETE CASCADE; + + +-- +-- Name: exrelh_data_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_relationships_history + ADD CONSTRAINT exrelh_data_fk FOREIGN KEY (data_id) REFERENCES data_all(id) ON DELETE SET NULL; + + +-- +-- Name: exrelh_main_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_relationships_history + ADD CONSTRAINT exrelh_main_expe_fk FOREIGN KEY (main_expe_id) REFERENCES experiments_all(id) ON DELETE CASCADE; + + +-- +-- Name: exrelh_proj_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_relationships_history + ADD CONSTRAINT exrelh_proj_fk FOREIGN KEY (proj_id) REFERENCES projects(id) ON DELETE SET NULL; + + +-- +-- Name: exrelh_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_relationships_history + ADD CONSTRAINT exrelh_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id) ON DELETE SET NULL; + + +-- +-- Name: exty_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_types + ADD CONSTRAINT exty_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: exty_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY experiment_types + ADD CONSTRAINT exty_script_fk FOREIGN KEY (validation_script_id) REFERENCES scripts(id); + + +-- +-- Name: ffty_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY file_format_types + ADD CONSTRAINT ffty_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: filt_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY filters + ADD CONSTRAINT filt_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: filt_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY filters + ADD CONSTRAINT filt_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: grid_custom_columns_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY grid_custom_columns + ADD CONSTRAINT grid_custom_columns_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: grid_custom_columns_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY grid_custom_columns + ADD CONSTRAINT grid_custom_columns_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: lnda_data_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY link_data + ADD CONSTRAINT lnda_data_fk FOREIGN KEY (data_id) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: lnda_edms_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY link_data + ADD CONSTRAINT lnda_edms_fk FOREIGN KEY (edms_id) REFERENCES external_data_management_systems(id); + + +-- +-- Name: mapr_cvte_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_cvte_fk FOREIGN KEY (cvte_id) REFERENCES controlled_vocabulary_terms(id); + + +-- +-- Name: mapr_mapr_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_mapr_fk FOREIGN KEY (mate_prop_id) REFERENCES materials(id); + + +-- +-- Name: mapr_mate_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_mate_fk FOREIGN KEY (mate_id) REFERENCES materials(id); + + +-- +-- Name: mapr_mtpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_mtpt_fk FOREIGN KEY (mtpt_id) REFERENCES material_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: mapr_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties + ADD CONSTRAINT mapr_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: maprh_mate_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties_history + ADD CONSTRAINT maprh_mate_fk FOREIGN KEY (mate_id) REFERENCES materials(id) ON DELETE CASCADE; + + +-- +-- Name: maprh_mtpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_properties_history + ADD CONSTRAINT maprh_mtpt_fk FOREIGN KEY (mtpt_id) REFERENCES material_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: mate_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY materials + ADD CONSTRAINT mate_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: mate_maty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY materials + ADD CONSTRAINT mate_maty_fk FOREIGN KEY (maty_id) REFERENCES material_types(id); + + +-- +-- Name: mate_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY materials + ADD CONSTRAINT mate_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: maty_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_types + ADD CONSTRAINT maty_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: maty_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_types + ADD CONSTRAINT maty_script_fk FOREIGN KEY (validation_script_id) REFERENCES scripts(id); + + +-- +-- Name: metaproject_assignments_all_data_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_data_id_fk FOREIGN KEY (data_id) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: metaproject_assignments_all_del_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_del_id_fk FOREIGN KEY (del_id) REFERENCES deletions(id); + + +-- +-- Name: metaproject_assignments_all_expe_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_expe_id_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id) ON DELETE CASCADE; + + +-- +-- Name: metaproject_assignments_all_mate_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_mate_id_fk FOREIGN KEY (mate_id) REFERENCES materials(id) ON DELETE CASCADE; + + +-- +-- Name: metaproject_assignments_all_mepr_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_mepr_id_fk FOREIGN KEY (mepr_id) REFERENCES metaprojects(id) ON DELETE CASCADE; + + +-- +-- Name: metaproject_assignments_all_samp_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaproject_assignments_all + ADD CONSTRAINT metaproject_assignments_all_samp_id_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id) ON DELETE CASCADE; + + +-- +-- Name: metaprojects_owner_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY metaprojects + ADD CONSTRAINT metaprojects_owner_fk FOREIGN KEY (owner) REFERENCES persons(id) ON DELETE CASCADE; + + +-- +-- Name: mtpt_maty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_type_property_types + ADD CONSTRAINT mtpt_maty_fk FOREIGN KEY (maty_id) REFERENCES material_types(id) ON DELETE CASCADE; + + +-- +-- Name: mtpt_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_type_property_types + ADD CONSTRAINT mtpt_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: mtpt_prty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_type_property_types + ADD CONSTRAINT mtpt_prty_fk FOREIGN KEY (prty_id) REFERENCES property_types(id) ON DELETE CASCADE; + + +-- +-- Name: mtpt_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY material_type_property_types + ADD CONSTRAINT mtpt_script_fk FOREIGN KEY (script_id) REFERENCES scripts(id); + + +-- +-- Name: pers_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY persons + ADD CONSTRAINT pers_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: pers_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY persons + ADD CONSTRAINT pers_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: pers_space_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY persons + ADD CONSTRAINT pers_space_fk FOREIGN KEY (space_id) REFERENCES spaces(id); + + +-- +-- Name: prdq_ds_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY post_registration_dataset_queue + ADD CONSTRAINT prdq_ds_fk FOREIGN KEY (ds_id) REFERENCES data_all(id) ON DELETE CASCADE; + + +-- +-- Name: proj_pers_fk_leader; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_pers_fk_leader FOREIGN KEY (pers_id_leader) REFERENCES persons(id); + + +-- +-- Name: proj_pers_fk_mod; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_pers_fk_mod FOREIGN KEY (pers_id_modifier) REFERENCES persons(id); + + +-- +-- Name: proj_pers_fk_registerer; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_pers_fk_registerer FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: proj_space_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY projects + ADD CONSTRAINT proj_space_fk FOREIGN KEY (space_id) REFERENCES spaces(id); + + +-- +-- Name: prrelh_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY project_relationships_history + ADD CONSTRAINT prrelh_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id) ON DELETE SET NULL; + + +-- +-- Name: prrelh_main_proj_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY project_relationships_history + ADD CONSTRAINT prrelh_main_proj_fk FOREIGN KEY (main_proj_id) REFERENCES projects(id) ON DELETE CASCADE; + + +-- +-- Name: prrelh_space_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY project_relationships_history + ADD CONSTRAINT prrelh_space_fk FOREIGN KEY (space_id) REFERENCES spaces(id) ON DELETE SET NULL; + + +-- +-- Name: prty_covo_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_covo_fk FOREIGN KEY (covo_id) REFERENCES controlled_vocabularies(id); + + +-- +-- Name: prty_daty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_daty_fk FOREIGN KEY (daty_id) REFERENCES data_types(id); + + +-- +-- Name: prty_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: prty_maty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_maty_fk FOREIGN KEY (maty_prop_id) REFERENCES material_types(id) ON DELETE CASCADE; + + +-- +-- Name: prty_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY property_types + ADD CONSTRAINT prty_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: quer_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY queries + ADD CONSTRAINT quer_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: quer_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY queries + ADD CONSTRAINT quer_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: roas_ag_fk_grantee; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_ag_fk_grantee FOREIGN KEY (ag_id_grantee) REFERENCES authorization_groups(id) ON DELETE CASCADE; + + +-- +-- Name: roas_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id) ON DELETE CASCADE; + + +-- +-- Name: roas_pers_fk_grantee; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_pers_fk_grantee FOREIGN KEY (pers_id_grantee) REFERENCES persons(id) ON DELETE CASCADE; + + +-- +-- Name: roas_pers_fk_registerer; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_pers_fk_registerer FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: roas_space_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY role_assignments + ADD CONSTRAINT roas_space_fk FOREIGN KEY (space_id) REFERENCES spaces(id) ON DELETE CASCADE; + + +-- +-- Name: samp_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: samp_del_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_del_fk FOREIGN KEY (del_id) REFERENCES deletions(id); + + +-- +-- Name: samp_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id); + + +-- +-- Name: samp_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: samp_pers_fk_mod; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_pers_fk_mod FOREIGN KEY (pers_id_modifier) REFERENCES persons(id); + + +-- +-- Name: samp_samp_fk_part_of; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_samp_fk_part_of FOREIGN KEY (samp_id_part_of) REFERENCES samples_all(id); + + +-- +-- Name: samp_saty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_saty_fk FOREIGN KEY (saty_id) REFERENCES sample_types(id); + + +-- +-- Name: samp_space_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY samples_all + ADD CONSTRAINT samp_space_fk FOREIGN KEY (space_id) REFERENCES spaces(id); + + +-- +-- Name: sample_relationships_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sample_relationships_pers_fk FOREIGN KEY (pers_id_author) REFERENCES persons(id); + + +-- +-- Name: samprelh_data_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_history + ADD CONSTRAINT samprelh_data_fk FOREIGN KEY (data_id) REFERENCES data_all(id) ON DELETE SET NULL; + + +-- +-- Name: samprelh_expe_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_history + ADD CONSTRAINT samprelh_expe_fk FOREIGN KEY (expe_id) REFERENCES experiments_all(id) ON DELETE SET NULL; + + +-- +-- Name: samprelh_main_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_history + ADD CONSTRAINT samprelh_main_samp_fk FOREIGN KEY (main_samp_id) REFERENCES samples_all(id) ON DELETE CASCADE; + + +-- +-- Name: samprelh_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_history + ADD CONSTRAINT samprelh_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id) ON DELETE SET NULL; + + +-- +-- Name: samprelh_space_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_history + ADD CONSTRAINT samprelh_space_fk FOREIGN KEY (space_id) REFERENCES spaces(id) ON DELETE SET NULL; + + +-- +-- Name: sapr_cvte_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_cvte_fk FOREIGN KEY (cvte_id) REFERENCES controlled_vocabulary_terms(id); + + +-- +-- Name: sapr_mapr_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_mapr_fk FOREIGN KEY (mate_prop_id) REFERENCES materials(id); + + +-- +-- Name: sapr_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: sapr_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id); + + +-- +-- Name: sapr_stpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties + ADD CONSTRAINT sapr_stpt_fk FOREIGN KEY (stpt_id) REFERENCES sample_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: saprh_samp_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties_history + ADD CONSTRAINT saprh_samp_fk FOREIGN KEY (samp_id) REFERENCES samples_all(id) ON DELETE CASCADE; + + +-- +-- Name: saprh_stpt_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_properties_history + ADD CONSTRAINT saprh_stpt_fk FOREIGN KEY (stpt_id) REFERENCES sample_type_property_types(id) ON DELETE CASCADE; + + +-- +-- Name: sare_data_fk_child; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sare_data_fk_child FOREIGN KEY (sample_id_child) REFERENCES samples_all(id) ON DELETE CASCADE; + + +-- +-- Name: sare_data_fk_parent; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sare_data_fk_parent FOREIGN KEY (sample_id_parent) REFERENCES samples_all(id) ON DELETE CASCADE; + + +-- +-- Name: sare_data_fk_relationship; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sare_data_fk_relationship FOREIGN KEY (relationship_id) REFERENCES relationship_types(id); + + +-- +-- Name: sare_del_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_relationships_all + ADD CONSTRAINT sare_del_fk FOREIGN KEY (del_id) REFERENCES deletions(id); + + +-- +-- Name: saty_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_types + ADD CONSTRAINT saty_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: saty_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_types + ADD CONSTRAINT saty_script_fk FOREIGN KEY (validation_script_id) REFERENCES scripts(id); + + +-- +-- Name: scri_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY scripts + ADD CONSTRAINT scri_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: scri_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY scripts + ADD CONSTRAINT scri_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: space_dbin_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY spaces + ADD CONSTRAINT space_dbin_fk FOREIGN KEY (dbin_id) REFERENCES database_instances(id); + + +-- +-- Name: space_pers_fk_registerer; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY spaces + ADD CONSTRAINT space_pers_fk_registerer FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: stpt_pers_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_type_property_types + ADD CONSTRAINT stpt_pers_fk FOREIGN KEY (pers_id_registerer) REFERENCES persons(id); + + +-- +-- Name: stpt_prty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_type_property_types + ADD CONSTRAINT stpt_prty_fk FOREIGN KEY (prty_id) REFERENCES property_types(id) ON DELETE CASCADE; + + +-- +-- Name: stpt_saty_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_type_property_types + ADD CONSTRAINT stpt_saty_fk FOREIGN KEY (saty_id) REFERENCES sample_types(id) ON DELETE CASCADE; + + +-- +-- Name: stpt_script_fk; Type: FK CONSTRAINT; Schema: public; Owner: - +-- + +ALTER TABLE ONLY sample_type_property_types + ADD CONSTRAINT stpt_script_fk FOREIGN KEY (script_id) REFERENCES scripts(id); + + +-- +-- Name: public; Type: ACL; Schema: -; Owner: - +-- + +REVOKE ALL ON SCHEMA public FROM PUBLIC; +REVOKE ALL ON SCHEMA public FROM postgres; +GRANT ALL ON SCHEMA public TO postgres; +GRANT ALL ON SCHEMA public TO PUBLIC; + + +-- +-- Name: attachment_content_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE attachment_content_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE attachment_content_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE attachment_content_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE attachment_content_id_seq TO openbis_readonly; + + +-- +-- Name: attachment_contents; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE attachment_contents FROM PUBLIC; +REVOKE ALL ON TABLE attachment_contents FROM pkupczyk; +GRANT ALL ON TABLE attachment_contents TO pkupczyk; +GRANT SELECT ON TABLE attachment_contents TO openbis_readonly; + + +-- +-- Name: attachment_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE attachment_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE attachment_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE attachment_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE attachment_id_seq TO openbis_readonly; + + +-- +-- Name: attachments; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE attachments FROM PUBLIC; +REVOKE ALL ON TABLE attachments FROM pkupczyk; +GRANT ALL ON TABLE attachments TO pkupczyk; +GRANT SELECT ON TABLE attachments TO openbis_readonly; + + +-- +-- Name: authorization_group_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE authorization_group_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE authorization_group_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE authorization_group_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE authorization_group_id_seq TO openbis_readonly; + + +-- +-- Name: authorization_group_persons; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE authorization_group_persons FROM PUBLIC; +REVOKE ALL ON TABLE authorization_group_persons FROM pkupczyk; +GRANT ALL ON TABLE authorization_group_persons TO pkupczyk; +GRANT SELECT ON TABLE authorization_group_persons TO openbis_readonly; + + +-- +-- Name: authorization_groups; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE authorization_groups FROM PUBLIC; +REVOKE ALL ON TABLE authorization_groups FROM pkupczyk; +GRANT ALL ON TABLE authorization_groups TO pkupczyk; +GRANT SELECT ON TABLE authorization_groups TO openbis_readonly; + + +-- +-- Name: code_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE code_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE code_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE code_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE code_seq TO openbis_readonly; + + +-- +-- Name: controlled_vocabularies; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE controlled_vocabularies FROM PUBLIC; +REVOKE ALL ON TABLE controlled_vocabularies FROM pkupczyk; +GRANT ALL ON TABLE controlled_vocabularies TO pkupczyk; +GRANT SELECT ON TABLE controlled_vocabularies TO openbis_readonly; + + +-- +-- Name: controlled_vocabulary_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE controlled_vocabulary_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE controlled_vocabulary_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE controlled_vocabulary_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE controlled_vocabulary_id_seq TO openbis_readonly; + + +-- +-- Name: controlled_vocabulary_terms; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE controlled_vocabulary_terms FROM PUBLIC; +REVOKE ALL ON TABLE controlled_vocabulary_terms FROM pkupczyk; +GRANT ALL ON TABLE controlled_vocabulary_terms TO pkupczyk; +GRANT SELECT ON TABLE controlled_vocabulary_terms TO openbis_readonly; + + +-- +-- Name: core_plugin_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE core_plugin_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE core_plugin_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE core_plugin_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE core_plugin_id_seq TO openbis_readonly; + + +-- +-- Name: core_plugins; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE core_plugins FROM PUBLIC; +REVOKE ALL ON TABLE core_plugins FROM pkupczyk; +GRANT ALL ON TABLE core_plugins TO pkupczyk; +GRANT SELECT ON TABLE core_plugins TO openbis_readonly; + + +-- +-- Name: cvte_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE cvte_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE cvte_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE cvte_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE cvte_id_seq TO openbis_readonly; + + +-- +-- Name: data_all; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_all FROM PUBLIC; +REVOKE ALL ON TABLE data_all FROM pkupczyk; +GRANT ALL ON TABLE data_all TO pkupczyk; +GRANT SELECT ON TABLE data_all TO openbis_readonly; + + +-- +-- Name: data; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data FROM PUBLIC; +REVOKE ALL ON TABLE data FROM pkupczyk; +GRANT ALL ON TABLE data TO pkupczyk; +GRANT SELECT ON TABLE data TO openbis_readonly; + + +-- +-- Name: data_deleted; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_deleted FROM PUBLIC; +REVOKE ALL ON TABLE data_deleted FROM pkupczyk; +GRANT ALL ON TABLE data_deleted TO pkupczyk; +GRANT SELECT ON TABLE data_deleted TO openbis_readonly; + + +-- +-- Name: data_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_id_seq TO openbis_readonly; + + +-- +-- Name: data_set_properties_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_properties_history FROM PUBLIC; +REVOKE ALL ON TABLE data_set_properties_history FROM pkupczyk; +GRANT ALL ON TABLE data_set_properties_history TO pkupczyk; +GRANT SELECT ON TABLE data_set_properties_history TO openbis_readonly; + + +-- +-- Name: data_set_relationships_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_relationships_history FROM PUBLIC; +REVOKE ALL ON TABLE data_set_relationships_history FROM pkupczyk; +GRANT ALL ON TABLE data_set_relationships_history TO pkupczyk; +GRANT SELECT ON TABLE data_set_relationships_history TO openbis_readonly; + + +-- +-- Name: data_set_history_view; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_history_view FROM PUBLIC; +REVOKE ALL ON TABLE data_set_history_view FROM pkupczyk; +GRANT ALL ON TABLE data_set_history_view TO pkupczyk; +GRANT SELECT ON TABLE data_set_history_view TO openbis_readonly; + + +-- +-- Name: data_set_properties; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_properties FROM PUBLIC; +REVOKE ALL ON TABLE data_set_properties FROM pkupczyk; +GRANT ALL ON TABLE data_set_properties TO pkupczyk; +GRANT SELECT ON TABLE data_set_properties TO openbis_readonly; + + +-- +-- Name: data_set_property_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_set_property_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_set_property_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_set_property_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_set_property_id_seq TO openbis_readonly; + + +-- +-- Name: data_set_relationship_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_set_relationship_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_set_relationship_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_set_relationship_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_set_relationship_id_seq TO openbis_readonly; + + +-- +-- Name: data_set_relationships_all; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_relationships_all FROM PUBLIC; +REVOKE ALL ON TABLE data_set_relationships_all FROM pkupczyk; +GRANT ALL ON TABLE data_set_relationships_all TO pkupczyk; +GRANT SELECT ON TABLE data_set_relationships_all TO openbis_readonly; + + +-- +-- Name: data_set_relationships; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_relationships FROM PUBLIC; +REVOKE ALL ON TABLE data_set_relationships FROM pkupczyk; +GRANT ALL ON TABLE data_set_relationships TO pkupczyk; +GRANT SELECT ON TABLE data_set_relationships TO openbis_readonly; + + +-- +-- Name: data_set_relationships_history_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_set_relationships_history_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_set_relationships_history_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_set_relationships_history_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_set_relationships_history_id_seq TO openbis_readonly; + + +-- +-- Name: data_set_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_set_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_set_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_set_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_set_type_id_seq TO openbis_readonly; + + +-- +-- Name: data_set_type_property_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_type_property_types FROM PUBLIC; +REVOKE ALL ON TABLE data_set_type_property_types FROM pkupczyk; +GRANT ALL ON TABLE data_set_type_property_types TO pkupczyk; +GRANT SELECT ON TABLE data_set_type_property_types TO openbis_readonly; + + +-- +-- Name: data_set_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_set_types FROM PUBLIC; +REVOKE ALL ON TABLE data_set_types FROM pkupczyk; +GRANT ALL ON TABLE data_set_types TO pkupczyk; +GRANT SELECT ON TABLE data_set_types TO openbis_readonly; + + +-- +-- Name: data_store_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_store_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_store_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_store_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_store_id_seq TO openbis_readonly; + + +-- +-- Name: data_store_service_data_set_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_store_service_data_set_types FROM PUBLIC; +REVOKE ALL ON TABLE data_store_service_data_set_types FROM pkupczyk; +GRANT ALL ON TABLE data_store_service_data_set_types TO pkupczyk; +GRANT SELECT ON TABLE data_store_service_data_set_types TO openbis_readonly; + + +-- +-- Name: data_store_services; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_store_services FROM PUBLIC; +REVOKE ALL ON TABLE data_store_services FROM pkupczyk; +GRANT ALL ON TABLE data_store_services TO pkupczyk; +GRANT SELECT ON TABLE data_store_services TO openbis_readonly; + + +-- +-- Name: data_store_services_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_store_services_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_store_services_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_store_services_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_store_services_id_seq TO openbis_readonly; + + +-- +-- Name: data_stores; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_stores FROM PUBLIC; +REVOKE ALL ON TABLE data_stores FROM pkupczyk; +GRANT ALL ON TABLE data_stores TO pkupczyk; +GRANT SELECT ON TABLE data_stores TO openbis_readonly; + + +-- +-- Name: data_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE data_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE data_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE data_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE data_type_id_seq TO openbis_readonly; + + +-- +-- Name: data_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE data_types FROM PUBLIC; +REVOKE ALL ON TABLE data_types FROM pkupczyk; +GRANT ALL ON TABLE data_types TO pkupczyk; +GRANT SELECT ON TABLE data_types TO openbis_readonly; + + +-- +-- Name: database_instance_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE database_instance_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE database_instance_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE database_instance_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE database_instance_id_seq TO openbis_readonly; + + +-- +-- Name: database_instances; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE database_instances FROM PUBLIC; +REVOKE ALL ON TABLE database_instances FROM pkupczyk; +GRANT ALL ON TABLE database_instances TO pkupczyk; +GRANT SELECT ON TABLE database_instances TO openbis_readonly; + + +-- +-- Name: database_version_logs; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE database_version_logs FROM PUBLIC; +REVOKE ALL ON TABLE database_version_logs FROM pkupczyk; +GRANT ALL ON TABLE database_version_logs TO pkupczyk; +GRANT SELECT ON TABLE database_version_logs TO openbis_readonly; + + +-- +-- Name: deletion_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE deletion_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE deletion_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE deletion_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE deletion_id_seq TO openbis_readonly; + + +-- +-- Name: deletions; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE deletions FROM PUBLIC; +REVOKE ALL ON TABLE deletions FROM pkupczyk; +GRANT ALL ON TABLE deletions TO pkupczyk; +GRANT SELECT ON TABLE deletions TO openbis_readonly; + + +-- +-- Name: dstpt_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE dstpt_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE dstpt_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE dstpt_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE dstpt_id_seq TO openbis_readonly; + + +-- +-- Name: entity_operations_log; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE entity_operations_log FROM PUBLIC; +REVOKE ALL ON TABLE entity_operations_log FROM pkupczyk; +GRANT ALL ON TABLE entity_operations_log TO pkupczyk; +GRANT SELECT ON TABLE entity_operations_log TO openbis_readonly; + + +-- +-- Name: entity_operations_log_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE entity_operations_log_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE entity_operations_log_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE entity_operations_log_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE entity_operations_log_id_seq TO openbis_readonly; + + +-- +-- Name: etpt_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE etpt_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE etpt_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE etpt_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE etpt_id_seq TO openbis_readonly; + + +-- +-- Name: event_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE event_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE event_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE event_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE event_id_seq TO openbis_readonly; + + +-- +-- Name: events; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE events FROM PUBLIC; +REVOKE ALL ON TABLE events FROM pkupczyk; +GRANT ALL ON TABLE events TO pkupczyk; +GRANT SELECT ON TABLE events TO openbis_readonly; + + +-- +-- Name: experiment_code_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE experiment_code_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE experiment_code_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE experiment_code_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE experiment_code_seq TO openbis_readonly; + + +-- +-- Name: experiment_properties_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiment_properties_history FROM PUBLIC; +REVOKE ALL ON TABLE experiment_properties_history FROM pkupczyk; +GRANT ALL ON TABLE experiment_properties_history TO pkupczyk; +GRANT SELECT ON TABLE experiment_properties_history TO openbis_readonly; + + +-- +-- Name: experiment_relationships_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiment_relationships_history FROM PUBLIC; +REVOKE ALL ON TABLE experiment_relationships_history FROM pkupczyk; +GRANT ALL ON TABLE experiment_relationships_history TO pkupczyk; +GRANT SELECT ON TABLE experiment_relationships_history TO openbis_readonly; + + +-- +-- Name: experiment_history_view; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiment_history_view FROM PUBLIC; +REVOKE ALL ON TABLE experiment_history_view FROM pkupczyk; +GRANT ALL ON TABLE experiment_history_view TO pkupczyk; +GRANT SELECT ON TABLE experiment_history_view TO openbis_readonly; + + +-- +-- Name: experiment_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE experiment_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE experiment_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE experiment_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE experiment_id_seq TO openbis_readonly; + + +-- +-- Name: experiment_properties; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiment_properties FROM PUBLIC; +REVOKE ALL ON TABLE experiment_properties FROM pkupczyk; +GRANT ALL ON TABLE experiment_properties TO pkupczyk; +GRANT SELECT ON TABLE experiment_properties TO openbis_readonly; + + +-- +-- Name: experiment_property_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE experiment_property_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE experiment_property_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE experiment_property_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE experiment_property_id_seq TO openbis_readonly; + + +-- +-- Name: experiment_relationships_history_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE experiment_relationships_history_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE experiment_relationships_history_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE experiment_relationships_history_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE experiment_relationships_history_id_seq TO openbis_readonly; + + +-- +-- Name: experiment_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE experiment_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE experiment_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE experiment_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE experiment_type_id_seq TO openbis_readonly; + + +-- +-- Name: experiment_type_property_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiment_type_property_types FROM PUBLIC; +REVOKE ALL ON TABLE experiment_type_property_types FROM pkupczyk; +GRANT ALL ON TABLE experiment_type_property_types TO pkupczyk; +GRANT SELECT ON TABLE experiment_type_property_types TO openbis_readonly; + + +-- +-- Name: experiment_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiment_types FROM PUBLIC; +REVOKE ALL ON TABLE experiment_types FROM pkupczyk; +GRANT ALL ON TABLE experiment_types TO pkupczyk; +GRANT SELECT ON TABLE experiment_types TO openbis_readonly; + + +-- +-- Name: experiments_all; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiments_all FROM PUBLIC; +REVOKE ALL ON TABLE experiments_all FROM pkupczyk; +GRANT ALL ON TABLE experiments_all TO pkupczyk; +GRANT SELECT ON TABLE experiments_all TO openbis_readonly; + + +-- +-- Name: experiments; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiments FROM PUBLIC; +REVOKE ALL ON TABLE experiments FROM pkupczyk; +GRANT ALL ON TABLE experiments TO pkupczyk; +GRANT SELECT ON TABLE experiments TO openbis_readonly; + + +-- +-- Name: experiments_deleted; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE experiments_deleted FROM PUBLIC; +REVOKE ALL ON TABLE experiments_deleted FROM pkupczyk; +GRANT ALL ON TABLE experiments_deleted TO pkupczyk; +GRANT SELECT ON TABLE experiments_deleted TO openbis_readonly; + + +-- +-- Name: external_data; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE external_data FROM PUBLIC; +REVOKE ALL ON TABLE external_data FROM pkupczyk; +GRANT ALL ON TABLE external_data TO pkupczyk; +GRANT SELECT ON TABLE external_data TO openbis_readonly; + + +-- +-- Name: external_data_management_system_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE external_data_management_system_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE external_data_management_system_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE external_data_management_system_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE external_data_management_system_id_seq TO openbis_readonly; + + +-- +-- Name: external_data_management_systems; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE external_data_management_systems FROM PUBLIC; +REVOKE ALL ON TABLE external_data_management_systems FROM pkupczyk; +GRANT ALL ON TABLE external_data_management_systems TO pkupczyk; +GRANT SELECT ON TABLE external_data_management_systems TO openbis_readonly; + + +-- +-- Name: file_format_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE file_format_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE file_format_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE file_format_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE file_format_type_id_seq TO openbis_readonly; + + +-- +-- Name: file_format_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE file_format_types FROM PUBLIC; +REVOKE ALL ON TABLE file_format_types FROM pkupczyk; +GRANT ALL ON TABLE file_format_types TO pkupczyk; +GRANT SELECT ON TABLE file_format_types TO openbis_readonly; + + +-- +-- Name: filter_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE filter_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE filter_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE filter_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE filter_id_seq TO openbis_readonly; + + +-- +-- Name: filters; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE filters FROM PUBLIC; +REVOKE ALL ON TABLE filters FROM pkupczyk; +GRANT ALL ON TABLE filters TO pkupczyk; +GRANT SELECT ON TABLE filters TO openbis_readonly; + + +-- +-- Name: grid_custom_columns; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE grid_custom_columns FROM PUBLIC; +REVOKE ALL ON TABLE grid_custom_columns FROM pkupczyk; +GRANT ALL ON TABLE grid_custom_columns TO pkupczyk; +GRANT SELECT ON TABLE grid_custom_columns TO openbis_readonly; + + +-- +-- Name: grid_custom_columns_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE grid_custom_columns_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE grid_custom_columns_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE grid_custom_columns_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE grid_custom_columns_id_seq TO openbis_readonly; + + +-- +-- Name: link_data; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE link_data FROM PUBLIC; +REVOKE ALL ON TABLE link_data FROM pkupczyk; +GRANT ALL ON TABLE link_data TO pkupczyk; +GRANT SELECT ON TABLE link_data TO openbis_readonly; + + +-- +-- Name: locator_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE locator_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE locator_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE locator_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE locator_type_id_seq TO openbis_readonly; + + +-- +-- Name: locator_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE locator_types FROM PUBLIC; +REVOKE ALL ON TABLE locator_types FROM pkupczyk; +GRANT ALL ON TABLE locator_types TO pkupczyk; +GRANT SELECT ON TABLE locator_types TO openbis_readonly; + + +-- +-- Name: material_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE material_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE material_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE material_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE material_id_seq TO openbis_readonly; + + +-- +-- Name: material_properties; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE material_properties FROM PUBLIC; +REVOKE ALL ON TABLE material_properties FROM pkupczyk; +GRANT ALL ON TABLE material_properties TO pkupczyk; +GRANT SELECT ON TABLE material_properties TO openbis_readonly; + + +-- +-- Name: material_properties_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE material_properties_history FROM PUBLIC; +REVOKE ALL ON TABLE material_properties_history FROM pkupczyk; +GRANT ALL ON TABLE material_properties_history TO pkupczyk; +GRANT SELECT ON TABLE material_properties_history TO openbis_readonly; + + +-- +-- Name: material_property_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE material_property_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE material_property_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE material_property_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE material_property_id_seq TO openbis_readonly; + + +-- +-- Name: material_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE material_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE material_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE material_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE material_type_id_seq TO openbis_readonly; + + +-- +-- Name: material_type_property_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE material_type_property_types FROM PUBLIC; +REVOKE ALL ON TABLE material_type_property_types FROM pkupczyk; +GRANT ALL ON TABLE material_type_property_types TO pkupczyk; +GRANT SELECT ON TABLE material_type_property_types TO openbis_readonly; + + +-- +-- Name: material_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE material_types FROM PUBLIC; +REVOKE ALL ON TABLE material_types FROM pkupczyk; +GRANT ALL ON TABLE material_types TO pkupczyk; +GRANT SELECT ON TABLE material_types TO openbis_readonly; + + +-- +-- Name: materials; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE materials FROM PUBLIC; +REVOKE ALL ON TABLE materials FROM pkupczyk; +GRANT ALL ON TABLE materials TO pkupczyk; +GRANT SELECT ON TABLE materials TO openbis_readonly; + + +-- +-- Name: metaproject_assignment_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE metaproject_assignment_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE metaproject_assignment_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE metaproject_assignment_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE metaproject_assignment_id_seq TO openbis_readonly; + + +-- +-- Name: metaproject_assignments_all; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE metaproject_assignments_all FROM PUBLIC; +REVOKE ALL ON TABLE metaproject_assignments_all FROM pkupczyk; +GRANT ALL ON TABLE metaproject_assignments_all TO pkupczyk; +GRANT SELECT ON TABLE metaproject_assignments_all TO openbis_readonly; + + +-- +-- Name: metaproject_assignments; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE metaproject_assignments FROM PUBLIC; +REVOKE ALL ON TABLE metaproject_assignments FROM pkupczyk; +GRANT ALL ON TABLE metaproject_assignments TO pkupczyk; +GRANT SELECT ON TABLE metaproject_assignments TO openbis_readonly; + + +-- +-- Name: metaproject_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE metaproject_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE metaproject_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE metaproject_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE metaproject_id_seq TO openbis_readonly; + + +-- +-- Name: metaprojects; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE metaprojects FROM PUBLIC; +REVOKE ALL ON TABLE metaprojects FROM pkupczyk; +GRANT ALL ON TABLE metaprojects TO pkupczyk; +GRANT SELECT ON TABLE metaprojects TO openbis_readonly; + + +-- +-- Name: mtpt_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE mtpt_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE mtpt_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE mtpt_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE mtpt_id_seq TO openbis_readonly; + + +-- +-- Name: perm_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE perm_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE perm_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE perm_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE perm_id_seq TO openbis_readonly; + + +-- +-- Name: person_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE person_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE person_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE person_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE person_id_seq TO openbis_readonly; + + +-- +-- Name: persons; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE persons FROM PUBLIC; +REVOKE ALL ON TABLE persons FROM pkupczyk; +GRANT ALL ON TABLE persons TO pkupczyk; +GRANT SELECT ON TABLE persons TO openbis_readonly; + + +-- +-- Name: post_registration_dataset_queue; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE post_registration_dataset_queue FROM PUBLIC; +REVOKE ALL ON TABLE post_registration_dataset_queue FROM pkupczyk; +GRANT ALL ON TABLE post_registration_dataset_queue TO pkupczyk; +GRANT SELECT ON TABLE post_registration_dataset_queue TO openbis_readonly; + + +-- +-- Name: post_registration_dataset_queue_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE post_registration_dataset_queue_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE post_registration_dataset_queue_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE post_registration_dataset_queue_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE post_registration_dataset_queue_id_seq TO openbis_readonly; + + +-- +-- Name: project_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE project_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE project_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE project_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE project_id_seq TO openbis_readonly; + + +-- +-- Name: project_relationships_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE project_relationships_history FROM PUBLIC; +REVOKE ALL ON TABLE project_relationships_history FROM pkupczyk; +GRANT ALL ON TABLE project_relationships_history TO pkupczyk; +GRANT SELECT ON TABLE project_relationships_history TO openbis_readonly; + + +-- +-- Name: project_relationships_history_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE project_relationships_history_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE project_relationships_history_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE project_relationships_history_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE project_relationships_history_id_seq TO openbis_readonly; + + +-- +-- Name: projects; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE projects FROM PUBLIC; +REVOKE ALL ON TABLE projects FROM pkupczyk; +GRANT ALL ON TABLE projects TO pkupczyk; +GRANT SELECT ON TABLE projects TO openbis_readonly; + + +-- +-- Name: property_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE property_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE property_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE property_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE property_type_id_seq TO openbis_readonly; + + +-- +-- Name: property_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE property_types FROM PUBLIC; +REVOKE ALL ON TABLE property_types FROM pkupczyk; +GRANT ALL ON TABLE property_types TO pkupczyk; +GRANT SELECT ON TABLE property_types TO openbis_readonly; + + +-- +-- Name: queries; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE queries FROM PUBLIC; +REVOKE ALL ON TABLE queries FROM pkupczyk; +GRANT ALL ON TABLE queries TO pkupczyk; +GRANT SELECT ON TABLE queries TO openbis_readonly; + + +-- +-- Name: query_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE query_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE query_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE query_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE query_id_seq TO openbis_readonly; + + +-- +-- Name: relationship_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE relationship_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE relationship_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE relationship_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE relationship_type_id_seq TO openbis_readonly; + + +-- +-- Name: relationship_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE relationship_types FROM PUBLIC; +REVOKE ALL ON TABLE relationship_types FROM pkupczyk; +GRANT ALL ON TABLE relationship_types TO pkupczyk; +GRANT SELECT ON TABLE relationship_types TO openbis_readonly; + + +-- +-- Name: role_assignment_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE role_assignment_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE role_assignment_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE role_assignment_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE role_assignment_id_seq TO openbis_readonly; + + +-- +-- Name: role_assignments; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE role_assignments FROM PUBLIC; +REVOKE ALL ON TABLE role_assignments FROM pkupczyk; +GRANT ALL ON TABLE role_assignments TO pkupczyk; +GRANT SELECT ON TABLE role_assignments TO openbis_readonly; + + +-- +-- Name: sample_code_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE sample_code_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE sample_code_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE sample_code_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE sample_code_seq TO openbis_readonly; + + +-- +-- Name: sample_properties_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_properties_history FROM PUBLIC; +REVOKE ALL ON TABLE sample_properties_history FROM pkupczyk; +GRANT ALL ON TABLE sample_properties_history TO pkupczyk; +GRANT SELECT ON TABLE sample_properties_history TO openbis_readonly; + + +-- +-- Name: sample_relationships_history; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_relationships_history FROM PUBLIC; +REVOKE ALL ON TABLE sample_relationships_history FROM pkupczyk; +GRANT ALL ON TABLE sample_relationships_history TO pkupczyk; +GRANT SELECT ON TABLE sample_relationships_history TO openbis_readonly; + + +-- +-- Name: sample_history_view; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_history_view FROM PUBLIC; +REVOKE ALL ON TABLE sample_history_view FROM pkupczyk; +GRANT ALL ON TABLE sample_history_view TO pkupczyk; +GRANT SELECT ON TABLE sample_history_view TO openbis_readonly; + + +-- +-- Name: sample_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE sample_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE sample_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE sample_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE sample_id_seq TO openbis_readonly; + + +-- +-- Name: sample_properties; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_properties FROM PUBLIC; +REVOKE ALL ON TABLE sample_properties FROM pkupczyk; +GRANT ALL ON TABLE sample_properties TO pkupczyk; +GRANT SELECT ON TABLE sample_properties TO openbis_readonly; + + +-- +-- Name: sample_property_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE sample_property_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE sample_property_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE sample_property_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE sample_property_id_seq TO openbis_readonly; + + +-- +-- Name: sample_relationship_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE sample_relationship_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE sample_relationship_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE sample_relationship_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE sample_relationship_id_seq TO openbis_readonly; + + +-- +-- Name: sample_relationships_all; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_relationships_all FROM PUBLIC; +REVOKE ALL ON TABLE sample_relationships_all FROM pkupczyk; +GRANT ALL ON TABLE sample_relationships_all TO pkupczyk; +GRANT SELECT ON TABLE sample_relationships_all TO openbis_readonly; + + +-- +-- Name: sample_relationships; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_relationships FROM PUBLIC; +REVOKE ALL ON TABLE sample_relationships FROM pkupczyk; +GRANT ALL ON TABLE sample_relationships TO pkupczyk; +GRANT SELECT ON TABLE sample_relationships TO openbis_readonly; + + +-- +-- Name: sample_relationships_history_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE sample_relationships_history_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE sample_relationships_history_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE sample_relationships_history_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE sample_relationships_history_id_seq TO openbis_readonly; + + +-- +-- Name: sample_type_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE sample_type_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE sample_type_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE sample_type_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE sample_type_id_seq TO openbis_readonly; + + +-- +-- Name: sample_type_property_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_type_property_types FROM PUBLIC; +REVOKE ALL ON TABLE sample_type_property_types FROM pkupczyk; +GRANT ALL ON TABLE sample_type_property_types TO pkupczyk; +GRANT SELECT ON TABLE sample_type_property_types TO openbis_readonly; + + +-- +-- Name: sample_types; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE sample_types FROM PUBLIC; +REVOKE ALL ON TABLE sample_types FROM pkupczyk; +GRANT ALL ON TABLE sample_types TO pkupczyk; +GRANT SELECT ON TABLE sample_types TO openbis_readonly; + + +-- +-- Name: samples_all; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE samples_all FROM PUBLIC; +REVOKE ALL ON TABLE samples_all FROM pkupczyk; +GRANT ALL ON TABLE samples_all TO pkupczyk; +GRANT SELECT ON TABLE samples_all TO openbis_readonly; + + +-- +-- Name: samples; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE samples FROM PUBLIC; +REVOKE ALL ON TABLE samples FROM pkupczyk; +GRANT ALL ON TABLE samples TO pkupczyk; +GRANT SELECT ON TABLE samples TO openbis_readonly; + + +-- +-- Name: samples_deleted; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE samples_deleted FROM PUBLIC; +REVOKE ALL ON TABLE samples_deleted FROM pkupczyk; +GRANT ALL ON TABLE samples_deleted TO pkupczyk; +GRANT SELECT ON TABLE samples_deleted TO openbis_readonly; + + +-- +-- Name: script_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE script_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE script_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE script_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE script_id_seq TO openbis_readonly; + + +-- +-- Name: scripts; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE scripts FROM PUBLIC; +REVOKE ALL ON TABLE scripts FROM pkupczyk; +GRANT ALL ON TABLE scripts TO pkupczyk; +GRANT SELECT ON TABLE scripts TO openbis_readonly; + + +-- +-- Name: space_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE space_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE space_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE space_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE space_id_seq TO openbis_readonly; + + +-- +-- Name: spaces; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON TABLE spaces FROM PUBLIC; +REVOKE ALL ON TABLE spaces FROM pkupczyk; +GRANT ALL ON TABLE spaces TO pkupczyk; +GRANT SELECT ON TABLE spaces TO openbis_readonly; + + +-- +-- Name: stpt_id_seq; Type: ACL; Schema: public; Owner: - +-- + +REVOKE ALL ON SEQUENCE stpt_id_seq FROM PUBLIC; +REVOKE ALL ON SEQUENCE stpt_id_seq FROM pkupczyk; +GRANT ALL ON SEQUENCE stpt_id_seq TO pkupczyk; +GRANT SELECT ON SEQUENCE stpt_id_seq TO openbis_readonly; + + +-- +-- PostgreSQL database dump complete +-- + diff --git a/js-test/servers/common/openBIS-server/etc/log.xml b/js-test/servers/common/openBIS-server/etc/log.xml new file mode 100644 index 0000000000000000000000000000000000000000..c437339ded6a0516430f8b148c172fccb4ec73f3 --- /dev/null +++ b/js-test/servers/common/openBIS-server/etc/log.xml @@ -0,0 +1,62 @@ +<?xml version="1.0" encoding="UTF-8" ?> +<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd"> + +<!-- + // This configuration file is suitable for testing purposes. +--> +<log4j:configuration debug="true" xmlns:log4j='http://jakarta.apache.org/log4j/'> + + <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender"> + <layout class="org.apache.log4j.PatternLayout"> + <!-- + // %d: outputs the date of the logging event. + // %-5p: priority (i.e. level) of the logging event should be left justified to + // a width of five characters. + // %t: outputs the name of the thread that generated the logging event. + // %c: outputs the category of the logging event. + // %m: outputs the application supplied message associated with the logging event. + // %n: outputs the platform dependent line separator character or characters. + // %X: outputs the MDC (mapped diagnostic context) associated with the thread that generated the logging event. + --> + <param name="ConversionPattern" + value="%d %-5p [%t]%X{sessionInfo} %c - %m%n" /> + </layout> + </appender> + + <!-- + // Defined but not used right now. + --> + <appender name="NULL" class="org.apache.log4j.varia.NullAppender" /> + + <!-- + // Enable full wire (header and content) + context logging + // For more information look at http://jakarta.apache.org/commons/httpclient/logging.html. + // We do not need to set a level value here as loggers inherit their level from the root logger. + --> + + <!-- + // Do not use log level debug otherwise plain passwords are readable. + --> + <logger name="httpclient.wire"> + <level value="ERROR" /> + </logger> + + <!-- + // Uncomment this for debugging value binding in Hibernate + <category name="org.hibernate.type"> + <priority value="TRACE"/> + </category> + --> + + <!-- + <logger name="org.apache.commons.httpclient"> + <level value="DEBUG" /> + </logger> + --> + + <root> + <priority value="info" /> + <appender-ref ref="STDOUT" /> + </root> + +</log4j:configuration> diff --git a/js-test/servers/common/openBIS-server/etc/service.properties b/js-test/servers/common/openBIS-server/etc/service.properties new file mode 100644 index 0000000000000000000000000000000000000000..99ee77419cfc2446e4cdf6e1e89efd9864a01aff --- /dev/null +++ b/js-test/servers/common/openBIS-server/etc/service.properties @@ -0,0 +1,254 @@ +# --------------------------------------------------------------------------- +# Core plugins configuration +# --------------------------------------------------------------------------- + +core-plugins-folder=../core-plugins + +# --------------------------------------------------------------------------- +# Database configuration +# --------------------------------------------------------------------------- +# The database instance local unique identifier. Used when the new database is created. +database-instance = DEFAULT + +# The host and optionally port. Default is 'localhost'. +# database.url-host-part = +database.kind = test_js_common +# User who owns the database. Default: Operating system user running the server. +database.owner = +database.owner-password = +# Superuser of the database. Default: database-dependent. +database.admin-user = +database.admin-password = +# Max. number of active database connections. Default: 20. +database.max-active-connections = +# Max. number of idle database connections to keep open. Default: 20. +database.max-idle-connections = +# Log interval (in seconds) between two regular log entries of the number of active database +# connections. Default: 3600s. +database.active-connections-log-interval = + +# --------------------------------------------------------------------------- +# Authentication configuration +# --------------------------------------------------------------------------- +# Supported Authentication options are: +# 'file-authentication-service' +# 'ldap-authentication-service' +# 'crowd-authentication-service' +# 'file-crowd-authentication-service' +# 'file-ldap-authentication-service' +# 'stacked-authentication-service' : ldap - crowd +# For a detailed description please have a look at the Installation and Administrator +# Guide of the openBIS Server: https://wiki-bsse.ethz.ch/x/oYIUBQ + +authentication-service = dummy-authentication-service +dss-rpc.put.dss-code = DSS1 + +# --------------------------------------------------------------------------- +# Crowd configuration +# --------------------------------------------------------------------------- +crowd.service.host = crowd-bsse.ethz.ch +crowd.service.port = 8443 +crowd.application.name = openbis +crowd.application.password = + +# --------------------------------------------------------------------------- +# LDAP configuration +# --------------------------------------------------------------------------- +# The URL of the LDAP server, e.g. "ldap://d.ethz.ch/DC=d,DC=ethz,DC=ch" +ldap.server.url = <LDAP URL> +# The distinguished name of the security principal, +# e.g. "CN=carl,OU=EthUsers,DC=d,DC=ethz,DC=ch" +ldap.security.principal.distinguished.name = <distinguished name to login to the LDAP server> +# Password of the LDAP user account that will be used to login to the LDAP server to perform the queries +ldap.security.principal.password = <password of the user to connect to the LDAP server> +# The security protocol to use, use "ssl" or "none", default is "ssl" +ldap.security.protocol = +# The authentication method to use: "none" (no authentication), "simple", "strong" (SASL), defaults to "simple" +ldap.security.authentication-method = +# The referral mode: +# "follow" - follow referrals automatically (the default) +# "ignore" - ignore referrals +# "throw" - throw ReferralException when a referral is encountered +ldap.referral = +# The attribute name for the user id, defaults to "uid" +ldap.attributenames.user.id = +# The attribute name for the email, defaults to "mail" +ldap.attributenames.email = +# The attribute name for the first name, defaults to "givenName" +ldap.attributenames.first.name = +# The attribute name for the last name, defaults to "sn" +ldap.attributenames.last.name = +# Set to true to also query for email aliases +ldap.queryEmailForAliases = true +# The query template, needs to contain %s which will be filled with the query term, e.g. uid=username +# The default is: +# ldap.queryTemplate = (&(objectClass=organizationalPerson)(objectCategory=person)(objectClass=user)(%s)) +# which is known to work for many Active Directory installations. +# For OpenLDAP, replace by: +# ldap.queryTemplate = (&(%s)) +# For restriction to BSSE accounts in OpenLDAP, set to: +# ldap.queryTemplate = (&(objectClass=bssePosixAccount)(%s)) +ldap.queryTemplate = +# The number of times a failed LDAP query is retried at the max. Default: 1. +ldap.maxRetries = +# The timeout (in ms) to wait for an LDAP query to return, -1 for "wait indefinitely". Default: 10000. +ldap.timeout = +# Time time (in ms) to wait after a failure before retrying the query. Default: 10000. +ldap.timeToWaitAfterFailure= + +# --------------------------------------------------------------------------- +# Anonymous login configuration (optional) +# --------------------------------------------------------------------------- +# Login of the existing user whose settings will be used for anonymous login +#user-for-anonymous-login = <user-login> + +# --------------------------------------------------------------------------- +# Client configuration +# --------------------------------------------------------------------------- +# Name of the file that stores Web Client configuration +web-client-configuration-file = etc/web-client.properties + +# A comma-separated list of trusted cross-origin domains, that are allowed to +# query openBIS content. Typically these are lightweight webapps that integrate with openBIS +# via JSON-RPC services, but are not directly hosted within the openBIS application. +# +# Example 1 (two different domains configured): +# +# trusted-cross-origin-domains=https://myapp.domain.com:8443, http://other.domain.com +# +# Example 2 (match every domain): +# +# trusted-cross-origin-domains= * +# +# The '*' matches any arbitrary domain. It should be used with care as it opens openBIS +# for potential cross-site scripting attacks. +# +#trusted-cross-origin-domains= + +# --------------------------------------------------------------------------- +# Session configuration +# --------------------------------------------------------------------------- +# The time after which an inactive session is expired by the service (in minutes). +session-timeout = 720 + +# --------------------------------------------------------------------------- +# Business rules configuration +# --------------------------------------------------------------------------- +# When set to "true" enables the system to store material codes containing non-alphanumeric characters. +# Regardless of the value of this property no white spaces are allowed in the material codes. +#material-relax-code-constraints=false + +# --------------------------------------------------------------------------- +# CIFEX connection configuration. +# --------------------------------------------------------------------------- +# The URL of the CIFEX server +cifex-url = https://cifex.ethz.ch:443 +# Cifex users that will receive and automatically manage uploaded data. +# The user names should be prepended with 'id:' prefix for example. +# Example: +# cifex-recipient = id:dropboxuser, id:backpuser +cifex-recipient = + +# --------------------------------------------------------------------------- +# Hibernate Search +# --------------------------------------------------------------------------- +# The working directory. +hibernate.search.index-base = ./indices +# One of NO_INDEX, SKIP_IF_MARKER_FOUND, INDEX_FROM_SCRATCH. +# If not specified, default (SKIP_IF_MARKER_FOUND) is taken. +hibernate.search.index-mode = SKIP_IF_MARKER_FOUND +# Defines the maximum number of elements indexed before flushing the transaction-bound queue. +# Default is 1000. +hibernate.search.batch-size = 1000 +# Maximum number of search results +hibernate.search.maxResults = 100000 +# If 'async', the update of indices will be done in a separate thread. +hibernate.search.worker.execution=async + +# --------------------------------------------------------------------------- +# Online Help +# --------------------------------------------------------------------------- +# Online help is broken into two sections -- generic and specific. Generic help links back to +# the CISD. Specific help is provided by the host of the installation +# +# OpenBIS needs to know the root URL for the online help and a template for the individual pages. +# The template should have on parameter, called title, and should be constructed to automatically +# create the page if it does not already exist. +# The template can be created by going to the root page, adding a new link to the page, and +# replacing the title of the new page with the ${title} +onlinehelp.generic.root-url = https://wiki-bsse.ethz.ch/display/CISDDoc/OnlineHelp +onlinehelp.generic.page-template = https://wiki-bsse.ethz.ch/pages/createpage.action?spaceKey=CISDDoc&title=${title}&linkCreation=true&fromPageId=40633829 +#onlinehelp.specific.root-url = https://wiki-bsse.ethz.ch/display/CISDDoc/OnlineHelp +#onlinehelp.specific.page-template = https://wiki-bsse.ethz.ch/pages/createpage.action?spaceKey=CISDDoc&title=${title}&linkCreation=true&fromPageId=40633829 + +# --------------------------------------------------------------------------- +# JMX memory monitor +# --------------------------------------------------------------------------- +# Interval between two runs of the memory monitor (in seconds). +# Set to -1 to disable the memory monitor. +memorymonitor-monitoring-interval = 60 +# Interval between two regular log call of the memory monitor (in seconds). +# Set to -1 to disable regular memory usage logging. +memorymonitor-log-interval = 3600 +# The percentage of memory that, if exceeded, triggers a notify log of the memory manager, +# Set to 100 to disable. +memorymonitor-high-watermark-percent = 90 + +# --------------------------------------------------------------------------- +# Database Configurations for Query module (optional) +# --------------------------------------------------------------------------- +# Comma separated keys of databases configured for Query module. +# Each database should have configuration properties prefixed with its key. +# Mandatory properties for each <database> include: +# <database>.label - name shown to the openBIS user when adding or editing a customized query +# <database>.database-driver - JDBC Driver of the database (e.g. org.postgresql.Driver) +# <database>.database-url - JDBC URL to the database (e.g. jdbc:postgresql://localhost/openbis) +# Optional properties for each <database> include: +# <database>.database-user - name of the database user (default: user.name from system properties) +# <database>.database-password - password of the database user +# <database>.creator-minimal-role - minimal role required to create/edit queries on this database (default: POWER_USER) +# <database>.data-space - If NOT specified OBSERVER of any space will be allowed to perform +# queries and <creator-minimal-role> of any space will allowed +# to create/edit queries on this DB. +# - If specified only OBSERVER of the space will be allowed to perform +# queries and <creator-minimal-role> of the space will allowed +# to create/edit queries on this DB. +#query-databases = openbisDB +# +#openbisDB.label = openBIS meta data +#openbisDB.data-space = CISD +#openbisDB.creator-minimal-role = SPACE_ADMIN +#openbisDB.database-driver = org.postgresql.Driver +#openbisDB.database-url = jdbc:postgresql://localhost/openbis_standard-technologies +#openbisDB.database-username = +#openbisDB.database-password = + +# --------------------------------------------------------------------------- +# Maintenance plugins configuration (optional) +# --------------------------------------------------------------------------- +# Comma separated names of maintenance plugins. +# Each plugin should have configuration properties prefixed with its name. +# Mandatory properties for each <plugin> include: +# <plugin>.class - Fully qualified plugin class name +# <plugin>.interval - The time between plugin executions (in seconds) +# Optional properties for each <plugin> include: +# <plugin>.start - Time of the first execution (HH:mm) +# <plugin>.execute-only-once - If true the task will be executed exactly once, +# interval will be ignored. By default set to false. +#maintenance-plugins = demo +# +#demo.class = ch.systemsx.cisd.openbis.generic.server.task.DemoMaintenanceTask +#demo.interval = 60 +#demo.property_1 = some value +#demo.property_2 = some value 2 + +# +# Internal - do not change +# + +# Authorization +# Supported: 'no-authorization' and 'active-authorization' +authorization-component-factory = active-authorization + +script-folder = . + diff --git a/js-test/servers/common/openBIS-server/etc/web-client.properties b/js-test/servers/common/openBIS-server/etc/web-client.properties new file mode 100644 index 0000000000000000000000000000000000000000..f946e8e9637b650d76c5bb464b0dffb5d75843af --- /dev/null +++ b/js-test/servers/common/openBIS-server/etc/web-client.properties @@ -0,0 +1,77 @@ +# Experimental: Enable moving entities to trash (non-permanent deletion). +# Default value: false +enable-trash = true + +# Default view mode that should be used if user doesn't have it specified in URL. +# Options: 'NORMAL' (standard mode - default), 'SIMPLE' (readonly mode with simplified GUI). +# +#default-view-mode = SIMPLE + +# Flag specifying whether default login mode is anonymous or not. +# If true a user-for-anonymous-login has to be defined in service.properties +# Default value: false +#default-anonymous-login = true + +# Maximal number of visible columns in tables. Default: 50. +max-visible-columns = 25 + +# Should the feature of adding unofficial/ad-hoc terms to vocabularies be turned on. +# Default value: false +allow-adding-unofficial-terms = true + +# (optional) List of data set types for which there should be an image overview shown in dataset tables. +# If not specified image overview will not be shown for any datasets. +data-set-types-with-image-overview = HCS_IMAGE, UNKNOWN + +# (optional) Allows power users adding vocabulary terms when editing the form. +# If not specified, default is false +# allow-adding-unofficial-terms = true + +# Configuration of entity (experiment, sample, data set, material) detail views. +# +# Mandatory properties: +# - view (entity detail view id) +# - types (list of entity type codes) +# Optional properties: +# - hide-sections (list of section ids) +# - hide-smart-view (removes "Smart View" from Data Set Detail View -> Data View) (generic_dataset_viewer) +# - hide-file-view (removes "File View" from Data Set Detail View -> Data View) (generic_dataset_viewer) +# Available sections in entity-detail-views: +# generic_dataset_viewer +# data-set-data-section +# data-set-parents-section +# data-set-children-section +# data-set-contained-section +# query-section +# generic_experiment_viewer +# data-sets-section +# attachment-section +# query-section +# experiment-sample-section +# generic_sample_viewer +# container-sample-section +# derived-samples-section +# parent-samples-section +# data-sets-section +# attachment-section +# query-section +# generic_material_viewer +# query-section +# +# Example: +# +detail-views = sample-view, experiment-view, data-view + +sample-view.view = generic_sample_viewer +sample-view.types = CELL_PLATE, CONTROL_LAYOUT +sample-view.hide-sections = attachment-section, module-section + +experiment-view.view = generic_experiment_viewer +experiment-view.types = COMPOUND_HCS +experiment-view.hide-sections = attachment-section + +data-view.view = generic_dataset_viewer +data-view.types = HCS_IMAGE +data-view.hide-smart-view = false +data-view.hide-file-view = false + diff --git a/js-test/servers/common/openBIS-server/resource/corncob_lowercase.txt b/js-test/servers/common/openBIS-server/resource/corncob_lowercase.txt new file mode 100644 index 0000000000000000000000000000000000000000..f5553f01f41d3c1c421660b40cd46d72531426d7 --- /dev/null +++ b/js-test/servers/common/openBIS-server/resource/corncob_lowercase.txt @@ -0,0 +1,58112 @@ +aardvark +aardwolf +aaron +aback +abacus +abaft +abalone +abandon +abandoned +abandonment +abandons +abase +abased +abasement +abash +abashed +abate +abated +abatement +abates +abattoir +abattoirs +abbe +abbess +abbey +abbeys +abbot +abbots +abbreviate +abbreviated +abbreviates +abbreviating +abbreviation +abbreviations +abdicate +abdicated +abdicates +abdicating +abdication +abdomen +abdomens +abdominal +abduct +abducted +abducting +abduction +abductions +abductor +abductors +abducts +abe +abeam +abel +abele +aberdeen 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