diff --git a/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html b/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html index 8586569f4e6ba1f5f547b778634ab5ce13b817d5..eca3166f7c01175312ba759cb9ed596c60c0071a 100644 --- a/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html +++ b/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html @@ -131,7 +131,8 @@ <li> For creating some samples we use the 'Sample Registration'. This is available under the 'Import' menu: <br> Import -> Sample Registration -> Choose sample type '(multiple)' and browse to the file: <div class="sourcecode"> ${DSS_ROOT_DIR}/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv</div> - Press the 'Save' button. <br> + + Tick 'Update existing'and press the 'Save' button. <br> This created several samples which can be viewed via Browse -> Samples. You might need to select the Sample Type 'all' <br> and the Space 'all'. <br> Note that the samples are in a parent-/child relationship indicated by the samples shown in the 'Parents' column. diff --git a/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv b/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv index 032fdf60e00c0a7c0e9580b7c5f97c24cd538529..44ec8cc76928c583ab09107ff58f0eec855d8c61 100644 --- a/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv +++ b/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv @@ -1 +1 @@ -[MASTER_SAMPLE] identifier container parents experiment BIOLOGICAL_SAMPLE_ARRIVED CONTACT_PERSON_EMAIL PRINCIPAL_INVESTIGATOR_EMAIL CONTACT_PERSON_NAME PRINCIPAL_INVESTIGATOR_NAME NOTES NCBI_ORGANISM_TAXONOMY SAMPLE_KIND /BSSE_FLOWCELLS/BSSE-QGF-MASTER-4 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment 2013-04-24 11:00:00 +0100 My name mail22bsse mail@bsse PI Name 9606 CHIP [RAW_SAMPLE] identifier container parents experiment CONCENTRATION_ORIGINAL_ILLUMINA EXTERNAL_SAMPLE_NAME LIBRARY_PROCESSING_POSSIBLE_YES_NO NOTES PREPARED_BY KIT_PREPARED /BSSE_FLOWCELLS/BSSE-QGF-RAW-6 /BSSE_FLOWCELLS/BSSE-QGF-MASTER-4 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment 4 Chip Seq1 YES me 2013-04-23 11:00:00 +0100 /BSSE_FLOWCELLS/BSSE-QGF-RAW-8 /BSSE_FLOWCELLS/BSSE-QGF-MASTER-4 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment 6 CHiP2 YES Linda 2013-04-20 11:00:00 +0100 [LIBRARY] identifier container parents experiment AGILENT_KIT CONCENTRATION_PREPARED_ILLUMINA DNA_CONCENTRATION_OF_LIBRARY DATA_TRANSFERRED EXTERNAL_SAMPLE_NAME FRAGMENT_SIZE_PREPARED_ILLUMINA INDEX1 INDEX2 INVOICE LOT KIT LIBRARY_PROCESSING_FAILED LIBRARY_PROCESSING_SUCCESSFUL NANO_DROP NOTES PREPARED_BY QC_AT_DBSSE KIT_PREPARED STARTING_AMOUNT_OF_SAMPLE_IN_NG /BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-1 /BSSE_FLOWCELLS/BSSE-QGF-RAW-6 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment AGILENT_DNA_KIT_1000 5 6 CHiP1 ATCACGA FALSE CHIP_SEQ_SAMPLE_PREP FALSE FALSE CONCND3300 2013-04-24 11:00:00 +0100 /BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-2 /BSSE_FLOWCELLS/BSSE-QGF-RAW-8 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment AGILENT_DNA_KIT_1000 5 6 CHiP2 CGATGTA FALSE CHIP_SEQ_SAMPLE_PREP FALSE FALSE CONCND3300 2013-04-24 11:00:00 +0100 [LIBRARY_POOL] identifier container parents experiment AGILENT_KIT CONCENTRATION DNA_CONCENTRATION_POOL DNA_CONCENTRATION_QGF EXTERNAL_SAMPLE_NAME FRAGMENT_SIZE_BASE_PAIRS INVOICE NANO_DROP NOTES PREPARED_BY QC_REQUIRED /BSSE_FLOWCELLS/BSSE-QGF-POOL-10 "/BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-1,/BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-2" /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment AGILENT_HIGH_SENSITIVITY_DNA_KIT 4 44 2 400 FALSE CONCND3300 Manuel YES \ No newline at end of file +[MASTER_SAMPLE] identifier container parents experiment BIOLOGICAL_SAMPLE_ARRIVED CONTACT_PERSON_EMAIL PRINCIPAL_INVESTIGATOR_EMAIL CONTACT_PERSON_NAME PRINCIPAL_INVESTIGATOR_NAME NOTES NCBI_ORGANISM_TAXONOMY SAMPLE_KIND /BSSE_FLOWCELLS/BSSE-QGF-MASTER-4 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment 2013-04-24 11:00:00 +0100 My name mail22bsse mail@bsse PI Name 9606 CHIP [RAW_SAMPLE] identifier container parents experiment CONCENTRATION_ORIGINAL_ILLUMINA EXTERNAL_SAMPLE_NAME LIBRARY_PROCESSING_POSSIBLE_YES_NO NOTES PREPARED_BY KIT_PREPARED /BSSE_FLOWCELLS/BSSE-QGF-RAW-6 /BSSE_FLOWCELLS/BSSE-QGF-MASTER-4 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment 4 Chip Seq1 YES me 2013-04-23 11:00:00 +0100 /BSSE_FLOWCELLS/BSSE-QGF-RAW-8 /BSSE_FLOWCELLS/BSSE-QGF-MASTER-4 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment 6 CHiP2 YES Linda 2013-04-20 11:00:00 +0100 [LIBRARY] identifier container parents experiment AGILENT_KIT CONCENTRATION_PREPARED_ILLUMINA DNA_CONCENTRATION_OF_LIBRARY DATA_TRANSFERRED EXTERNAL_SAMPLE_NAME FRAGMENT_SIZE_PREPARED_ILLUMINA INDEX1 INDEX2 INVOICE LOT KIT LIBRARY_PROCESSING_FAILED LIBRARY_PROCESSING_SUCCESSFUL NANO_DROP NOTES PREPARED_BY QC_AT_DBSSE KIT_PREPARED STARTING_AMOUNT_OF_SAMPLE_IN_NG /BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-1 /BSSE_FLOWCELLS/BSSE-QGF-RAW-6 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment AGILENT_DNA_KIT_1000 5 6 CHiP1 ATCACGA FALSE CHIP_SEQ_SAMPLE_PREP FALSE FALSE CONCND3300 2013-04-24 11:00:00 +0100 /BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-2 /BSSE_FLOWCELLS/BSSE-QGF-RAW-8 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment AGILENT_DNA_KIT_1000 5 6 CHiP2 CGATGTA FALSE CHIP_SEQ_SAMPLE_PREP FALSE FALSE CONCND3300 2013-04-24 11:00:00 +0100 [LIBRARY_POOL] identifier container parents experiment AGILENT_KIT CONCENTRATION DNA_CONCENTRATION_POOL DNA_CONCENTRATION_QGF EXTERNAL_SAMPLE_NAME FRAGMENT_SIZE_BASE_PAIRS INVOICE NANO_DROP NOTES PREPARED_BY QC_REQUIRED /BSSE_FLOWCELLS/BSSE-QGF-POOL-10 "/BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-1,/BSSE_FLOWCELLS/BSSE-QGF-LIBRARY-2" /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment AGILENT_HIGH_SENSITIVITY_DNA_KIT 4 44 2 400 FALSE CONCND3300 Manuel YES [ILLUMINA_FLOW_LANE] identifier container parents experiment default_space CONCENTRATION_FLOWLANE NOTES /BSSE_FLOWCELLS/C0P8LACXX:1 /BSSE_FLOWCELLS/C0P8LACXX /BSSE_FLOWCELLS/BSSE-QGF-POOL-10 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment /BSSE_FLOWCELLS/C0P8LACXX:2 /BSSE_FLOWCELLS/C0P8LACXX /BSSE_FLOWCELLS/BSSE-QGF-POOL-10 /BSSE_FLOWCELLS/FLOWCELLS/Test-Experiment \ No newline at end of file