diff --git a/sanofi/resource/managed_property/sanofi-upgrade-lib-template.sql b/sanofi/resource/managed_property/sanofi-upgrade-lib-template.sql index 40d83d41a8b7b4b883a7a6ca91ea9d70ea4c8c08..0236798b787a388bb98d483888eb33e32ff8157a 100644 --- a/sanofi/resource/managed_property/sanofi-upgrade-lib-template.sql +++ b/sanofi/resource/managed_property/sanofi-upgrade-lib-template.sql @@ -1,7 +1,3 @@ -DELETE - FROM scripts - WHERE NAME = 'SANOFI_LIBRARY_TEMPLATE'; - INSERT INTO scripts (id, dbin_id, name, description, pers_id_registerer, entity_kind, script_type, script) @@ -106,4 +102,4 @@ SET WHERE prty_id = (select id from property_types where code='LIBRARY_TEMPLATE') AND - exty_id = (select id from experiment_types where code='COMPOUND_HCS') \ No newline at end of file + exty_id = (select id from experiment_types where code='COMPOUND_HCS'); diff --git a/sanofi/resource/managed_property/sanofi-upgrade.sql b/sanofi/resource/managed_property/sanofi-upgrade.sql deleted file mode 100644 index 9126e592af7adffc474384f4963b47f95a1b1c09..0000000000000000000000000000000000000000 --- a/sanofi/resource/managed_property/sanofi-upgrade.sql +++ /dev/null @@ -1,109 +0,0 @@ -DELETE - FROM scripts - WHERE NAME = 'SANOFI_LIBRARY_TEMPLATE'; - -INSERT - INTO scripts - (id, dbin_id, name, description, pers_id_registerer, entity_kind, script_type, script) - - VALUES - ( - nextval('script_id_seq'), - (select max(id) from database_instances), - 'SANOFI_LIBRARY_TEMPLATE', - 'Script for managed property library template', - (select id from persons where user_id='admin'), - 'EXPERIMENT', - 'MANAGED_PROPERTY', - E' -from java.text import DecimalFormat -from ch.systemsx.cisd.common.geometry import ConversionUtils - -def parseLines(value): - lines = [] - if value: - lines = value.strip().split("\\n") - - return [ line.split("\\t") for line in lines ] - -def getMaxWidth(lines): - maxWidth = 0 - for line in lines: - maxWidth = max(maxWidth, len(line)) - return maxWidth - -def isControlWell(value): - return value in ["H", "L"] - -def isCompoundWell(value): - try: - numberParser = DecimalFormat() - numberParser.parse(value) - return True - except: - return False - -def validate(lines): - for line in lines: - for value in line: - normalizedValue = value.strip().upper() - if normalizedValue: - if isControlWell(normalizedValue): - pass - elif isCompoundWell(normalizedValue): - pass - else: - raise ValidationException("Invalid value found in template : " + normalizedValue) - - -def configureUI(): - propValue = "" - if not property.isSpecialValue(): - propValue = property.getValue() - lines = parseLines(propValue) - tableBuilder = createTableBuilder() - - if lines: - width = getMaxWidth(lines) - header = [ str(item) for item in range(1, width + 1) ] - header.insert(0, " ") - tableBuilder.addFullHeader(header) - - for i in range(0, len(lines)): - rowLetterCode = ConversionUtils.translateRowNumberIntoLetterCode(i+1) - row = [ rowLetterCode ] + lines[i] - tableBuilder.addFullRow(row) - - property.setOwnTab(True) - uiDesc = property.getUiDescription() - uiDesc.useTableOutput(tableBuilder.getTableModel()) - - factory = inputWidgetFactory() - editAction = uiDesc.addTableAction("Edit").setDescription("Edit the library template. " - "Copy the template from Excel and paste it in the text are below.") - textArea = factory.createMultilineTextInputField("Text") - textArea.setValue(propValue) - editAction.addInputWidgets([ textArea ]) - -def updateFromUI(action): - """in the "Edit" action we simply replace the entire property content""" - if action.getName() == "Edit": - newValue = action.getInputWidgetDescriptions()[0].getValue() - lines = parseLines(newValue) - validate(lines) - if not newValue: - property.setValue("") - else: - property.setValue(newValue) - -'); - - -UPDATE experiment_type_property_types -SET - is_managed_internally=True, - script_id=(select id from scripts where name='SANOFI_LIBRARY_TEMPLATE') -WHERE - prty_id = (select id from property_types where code='LIBRARY_TEMPLATE') - AND - exty_id = (select id from experiment_types where code='COMPOUND_HCS') \ No newline at end of file