diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java index 7bf7c0ec85e1c5f3f661c7ebc6cf36593805c984..e78779680fbf7fb34443422c8207f85f424fdd54 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreening.java @@ -30,14 +30,14 @@ import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractDssServiceRpc; import ch.systemsx.cisd.openbis.dss.generic.server.images.ImageChannelsUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; -import ch.systemsx.cisd.openbis.dss.screening.shared.api.IDssServiceRpcScreening; +import ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDataset; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IFeatureVectorDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IImageDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetMetadata; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateImageReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.WellPosition; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDataset; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IFeatureVectorDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IImageDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetMetadata; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateImageReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellPosition; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ScreeningConstants; /** diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/IDssServiceRpcScreening.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java similarity index 80% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/IDssServiceRpcScreening.java rename to screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java index 0c68e4c6e7fa890a83728b17985446c52dba76ba..7b22d405c27984718251715e63c306e5000eca07 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/IDssServiceRpcScreening.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/IDssServiceRpcScreening.java @@ -14,16 +14,16 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.dss.screening.shared.api; +package ch.systemsx.cisd.openbis.dss.screening.shared.api.v1; import java.io.InputStream; import java.util.List; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDataset; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IFeatureVectorDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IImageDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetMetadata; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateImageReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDataset; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IFeatureVectorDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IImageDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetMetadata; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateImageReference; /** * Public DSS API for screening. Non-compatible changes without consultation are forbidden. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java index 87100c3d2fb4a5304737f849d3670223d843ffd1..0faf4e591150c7dda4e579bc4d874c4cc6a10b15 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ScreeningOpenbisServiceFacade.java @@ -7,19 +7,19 @@ import java.util.List; import java.util.Map; import ch.systemsx.cisd.common.spring.HttpInvokerUtils; -import ch.systemsx.cisd.openbis.dss.screening.shared.api.IDssServiceRpcScreening; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.IScreeningApiServer; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDataset; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IFeatureVectorDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IImageDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetMetadata; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.Plate; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateImageReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateSingleImage; +import ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDataset; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IFeatureVectorDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IImageDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetMetadata; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateImageReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateSingleImage; /** * A client side facade of openBIS and Datastore Server API. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningApiServiceServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningApiServiceServer.java index 29a7600ab89d1c7db83879a2b9272867f6bb83eb..b9148c7d0d5c47e574cb1998e8207428657d67b1 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningApiServiceServer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningApiServiceServer.java @@ -23,7 +23,7 @@ import org.springframework.stereotype.Controller; import org.springframework.web.bind.annotation.RequestMapping; import ch.systemsx.cisd.openbis.plugin.screening.shared.ResourceNames; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.IScreeningApiServer; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer; /** * Exposes the screening openBIS API through HTTP diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java index 47b3dfb5119774bd158b4192e977878de5856748..61464bbbc2b194a60a14dda2880ffbdf2b6595d0 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java @@ -54,12 +54,12 @@ import ch.systemsx.cisd.openbis.plugin.screening.server.logic.PlateContentLoader import ch.systemsx.cisd.openbis.plugin.screening.server.logic.ScreeningApiImpl; import ch.systemsx.cisd.openbis.plugin.screening.shared.IScreeningServer; import ch.systemsx.cisd.openbis.plugin.screening.shared.ResourceNames; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.IScreeningApiServer; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateSingleImageReference; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java index 13fb260fab05b24a68446f2e515d9bc31693269f..52cc24407709444d0f4518a5ea13c97c546c05be 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java @@ -34,12 +34,12 @@ import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Vocabulary; import ch.systemsx.cisd.openbis.generic.shared.dto.Session; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.ExperimentIdentifier; import ch.systemsx.cisd.openbis.plugin.screening.shared.IScreeningServer; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.IScreeningApiServer; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.Plate; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateSingleImageReference; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java index 7d1d8d0774c85e1fc517ca09ed5626df95b83ebb..c8b629f2ab067c83308fd7b4a88a8cf56c6f9464 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/ScreeningApiImpl.java @@ -43,12 +43,12 @@ import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SampleOwnerIdentif import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SpaceIdentifier; import ch.systemsx.cisd.openbis.generic.shared.translator.SampleTypeTranslator; import ch.systemsx.cisd.openbis.plugin.screening.server.IScreeningBusinessObjectFactory; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.DatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ScreeningConstants; /** diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerPlateValidator.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerPlateValidator.java index 9843aa2850ec04bd39c6aa8a3559a6023a6fb0e4..5e00b7521422c5eecddb489b65994aa7ba017020 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerPlateValidator.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerPlateValidator.java @@ -6,7 +6,7 @@ import ch.systemsx.cisd.openbis.generic.shared.authorization.validator.AbstractV import ch.systemsx.cisd.openbis.generic.shared.dto.GroupPE; import ch.systemsx.cisd.openbis.generic.shared.dto.PersonPE; import ch.systemsx.cisd.openbis.generic.shared.dto.RoleAssignmentPE; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate; /** * Filters only samples from the spaces to which the user has rights. This code works only in the diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerReadonlyPlatePredicate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerReadonlyPlatePredicate.java index 7505500d63e583b05a742b07384a594c811a67bd..dbb626ffdc59520d6229ff180e16d4fb164499d3 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerReadonlyPlatePredicate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/authorization/ScreenerReadonlyPlatePredicate.java @@ -21,7 +21,7 @@ import ch.systemsx.cisd.openbis.generic.shared.authorization.predicate.SampleOwn import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.DatabaseInstanceIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SampleOwnerIdentifier; import ch.systemsx.cisd.openbis.generic.shared.dto.identifier.SpaceIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier; /** * @author Tomasz Pylak diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/IScreeningApiServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/IScreeningApiServer.java similarity index 88% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/IScreeningApiServer.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/IScreeningApiServer.java index ecc24d346d0952227ea75e40f238d747e8876713..9635f8cbe00ad7e4158d9bdffc18d359f931bc3a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/IScreeningApiServer.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/IScreeningApiServer.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1; import java.util.List; @@ -27,11 +27,11 @@ import ch.systemsx.cisd.openbis.generic.shared.authorization.annotation.RolesAll import ch.systemsx.cisd.openbis.generic.shared.authorization.predicate.DataSetCodePredicate; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.authorization.ScreenerPlateValidator; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.authorization.ScreenerReadonlyPlatePredicate; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.FeatureVectorDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.ImageDatasetReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.Plate; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier; /** * This interface is a part of the official public screening API. It is forbidden to change it in a diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/DatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java similarity index 94% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/DatasetIdentifier.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java index 3a666695f78fc034ece538559c871aabea640b85..727331fad149d5d2b1b9cc5ed70fa70c35be2f21 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/DatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/DatasetReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java similarity index 91% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/DatasetReference.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java index a46585ae7a796951c6595b0da4676c60c32bda2f..4b77fe435f869406d33152951328749ecdb325fd 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/DatasetReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVector.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java similarity index 90% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVector.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java index a7aa520f53955b4574c181d11d1a01a30d69043a..6d35e3a512b9c0e4f4c929e797786fd2132708d8 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVector.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVectorDataset.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java similarity index 80% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVectorDataset.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java index 65b5dc1143f97ccaccaba7ee8a4b57bbe0de1b95..5dfde08b5ffc2555f7fa1376b92acdf1e9a9ef64 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVectorDataset.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; import java.util.List; @@ -12,13 +12,13 @@ public class FeatureVectorDataset implements Serializable { private static final long serialVersionUID = 1L; - private final IDatasetIdentifier dataset; + private final IFeatureVectorDatasetIdentifier dataset; private final List<String> featureNames; private final List<FeatureVector> featureVectors; - public FeatureVectorDataset(IDatasetIdentifier dataset, List<String> featureNames, + public FeatureVectorDataset(IFeatureVectorDatasetIdentifier dataset, List<String> featureNames, List<FeatureVector> featureVectors) { this.dataset = dataset; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVectorDatasetReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java similarity index 93% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVectorDatasetReference.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java index ca950190a66361aeafd90f9c218181d424c8b6e1..3dcdc208943c4a5719af4868156907c0865213d9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/FeatureVectorDatasetReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; /** * Description of one feature vector dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IDatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java similarity index 93% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IDatasetIdentifier.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java index f6d5c2a908da97c2479fdf50cfadd6530f7314d9..dc9702c0088b0096bc44b06dc5b1da7445c2fd60 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IDatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; /** * Contains data which uniquely define a dataset diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IFeatureVectorDatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java similarity index 91% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IFeatureVectorDatasetIdentifier.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java index 9747dce82ca32276672cfe91024b8076501e98c4..871f95de3864c297c96b80bfe1cae5b912a8e3c6 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IFeatureVectorDatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; /** * Contains data which uniquely define a feature vector dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IImageDatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java similarity index 91% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IImageDatasetIdentifier.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java index 093d1a4d70c87a7ce60752f7e6bd51229110c1ee..75cc81382633d5e7e800f2ed1fe80f3287a64d02 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/IImageDatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; /** * Contains data which uniquely define an image dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/ImageDatasetMetadata.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java similarity index 95% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/ImageDatasetMetadata.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java index b8e7d956f1c0b5a57aa8b7940a181fb261354719..1cdc570a532018cb41af1f0b74d4b167542170e9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/ImageDatasetMetadata.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/ImageDatasetReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java similarity index 93% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/ImageDatasetReference.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java index 735ed66f9f47c5a0d76271c8fd700bcbda41de84..f12d8ed52148422f58902a5cf84bc525ea75b971 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/ImageDatasetReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; /** * Description of one image dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/Plate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java similarity index 92% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/Plate.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java index ed8ff9e3ef337dbbcf69daba100a1b9c7356f580..3b4adf06a92f2f4639c03efdefbfedcae78bfd79 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/Plate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java similarity index 94% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateIdentifier.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java index 9d82e988d3145595c46b6cc51832f3b1576040db..a0d26bcd0728e026666696fbfeefe60f40f170f3 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateImageReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java similarity index 80% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateImageReference.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java index c817c0f35e3e4c8d5020d3a31d4c03a8cef00ccf..b91b6da64a3c48cf03cf6a6913ee2c4f7206aa73 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateImageReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; @@ -17,6 +17,11 @@ public class PlateImageReference extends DatasetIdentifier implements Serializab private final int channel; + /** + * @param dataset if image dataset is specified, image will be fetched from it. If a feature + * vector dataset is specified, a connected image dataset will be found and image + * will be fetched from it. + */ public PlateImageReference(int wellRow, int wellColumn, int tile, int channel, IDatasetIdentifier dataset) { diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateSingleImage.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateSingleImage.java similarity index 84% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateSingleImage.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateSingleImage.java index e42e73bbd5f6783dced44468a4723fb94f83b1fb..1c34be646cb4346f71f60dd523906f6a421fc8ca 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/PlateSingleImage.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateSingleImage.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.InputStream; import java.io.Serializable; @@ -49,4 +49,11 @@ public class PlateSingleImage implements Serializable { return image; } + + /** The dataset which has been specified to fetched the image. */ + public IDatasetIdentifier getDataset() + { + return imageReference; + } + } \ No newline at end of file diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/WellPosition.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java similarity index 91% rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/WellPosition.java rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java index 794725176723a85173f5ee96d280c280d0b65795..178943750203e08632352f2eb429e1ac348c51b4 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/dto/WellPosition.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java @@ -1,4 +1,4 @@ -package ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto; +package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; diff --git a/screening/source/java/screening-dssApplicationContext.xml b/screening/source/java/screening-dssApplicationContext.xml index 1342c06b707512efd8973aabcfafa2d0ce331a5c..42ff1a64d86c9180cffc182adadd4cd158d4160e 100644 --- a/screening/source/java/screening-dssApplicationContext.xml +++ b/screening/source/java/screening-dssApplicationContext.xml @@ -29,7 +29,7 @@ <constructor-arg value="${storeroot-dir}" /> </bean> </property> - <property name="serviceInterface" value="ch.systemsx.cisd.openbis.dss.screening.shared.api.IDssServiceRpcScreening" /> + <property name="serviceInterface" value="ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening" /> </bean> diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/ScreeningClientApiTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/ScreeningClientApiTest.java index 2e3a6217b8d1638301293a109864cbefe45b79ae..d4433a03e33de79dcde029c3e15b1368762f2af6 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/ScreeningClientApiTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/ScreeningClientApiTest.java @@ -28,10 +28,10 @@ import java.util.List; import org.apache.log4j.lf5.util.StreamUtils; import ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.IDatasetIdentifier; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateImageReference; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.PlateSingleImage; -import ch.systemsx.cisd.openbis.plugin.screening.shared.api.dto.WellPosition; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.IDatasetIdentifier; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateImageReference; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateSingleImage; +import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellPosition; /** * @author Tomasz Pylak