From d1e91dc51a0f5eb53817afdc01d0c01739c25799 Mon Sep 17 00:00:00 2001
From: tpylak <tpylak>
Date: Mon, 16 Aug 2010 09:27:38 +0000
Subject: [PATCH] LMS-1645 dynamix: add a flag to a dataset which says if any
spot has timepoints/depth-stack
SVN: 17465
---
.../openbis/dss/etl/HCSDatasetUploader.java | 8 +--
.../openbis/dss/etl/ImageDatasetInfo.java | 58 +++++++++++++++++++
.../dss/etl/ImagingDatabaseVersionHolder.java | 2 +-
.../dss/etl/PlateStorageProcessor.java | 26 ++++++---
.../etl/ScreeningContainerDatasetInfo.java | 22 -------
.../ScreeningContainerDatasetInfoHelper.java | 13 +++--
.../featurevector/FeatureVectorUploader.java | 2 +-
.../application/detailviewers/WellImages.java | 9 +++
.../logic/PlateImageParametersFactory.java | 1 +
.../basic/dto/PlateImageParameters.java | 13 +++++
.../shared/imaging/HCSDatasetLoader.java | 5 ++
.../shared/imaging/IHCSDatasetLoader.java | 2 +
.../imaging/dataaccess/IImagingQueryDAO.java | 4 +-
.../imaging/dataaccess/ImgDatasetDTO.java | 17 +++++-
.../genedata/FeatureStorageProcessorTest.java | 2 +-
...AnalysisMergedRowsReportingPluginTest.java | 2 +-
.../server/DssServiceRpcScreeningTest.java | 3 +-
.../dataaccess/FeatureVectorDAOTest.java | 2 +-
.../dataaccess/ImagingQueryDAOTest.java | 2 +-
19 files changed, 144 insertions(+), 49 deletions(-)
create mode 100644 screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageDatasetInfo.java
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSDatasetUploader.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSDatasetUploader.java
index c71b2ddd3eb..5178e36ea11 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSDatasetUploader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/HCSDatasetUploader.java
@@ -40,7 +40,7 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.ImgSp
*/
public class HCSDatasetUploader
{
- public static void upload(IImagingQueryDAO dao, ScreeningContainerDatasetInfo info,
+ public static void upload(IImagingQueryDAO dao, ImageDatasetInfo info,
List<AcquiredPlateImage> images, Set<HCSImageFileExtractionResult.Channel> channels)
{
new HCSDatasetUploader(dao).upload(info, images, channels);
@@ -53,7 +53,7 @@ public class HCSDatasetUploader
this.dao = dao;
}
- private void upload(ScreeningContainerDatasetInfo info, List<AcquiredPlateImage> images,
+ private void upload(ImageDatasetInfo info, List<AcquiredPlateImage> images,
Set<HCSImageFileExtractionResult.Channel> channels)
{
ExperimentWithChannelsAndContainer basicStruct =
@@ -360,8 +360,8 @@ public class HCSDatasetUploader
}
}
- private long createDataset(long contId, ScreeningContainerDatasetInfo info)
+ private long createDataset(long contId, ImageDatasetInfo info)
{
- return ScreeningContainerDatasetInfoHelper.createDataset(dao, info, contId);
+ return ScreeningContainerDatasetInfoHelper.createImageDataset(dao, info, contId);
}
}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageDatasetInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageDatasetInfo.java
new file mode 100644
index 00000000000..3dfcfd3014c
--- /dev/null
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImageDatasetInfo.java
@@ -0,0 +1,58 @@
+/*
+ * Copyright 2010 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.systemsx.cisd.openbis.dss.etl;
+
+/**
+ * Describes one image dataset from imaging database.
+ *
+ * @author Tomasz Pylak
+ */
+public class ImageDatasetInfo extends ScreeningContainerDatasetInfo
+{
+ private final int tileRows, tileColumns;
+
+ // has any well timepoints or depth stack images?
+ private final boolean hasImageSeries;
+
+ public ImageDatasetInfo(ScreeningContainerDatasetInfo info, int tileRows, int tileColumns,
+ boolean hasImageSeries)
+ {
+ super.setContainerRows(info.getContainerRows());
+ super.setContainerColumns(info.getContainerColumns());
+ super.setContainerPermId(info.getContainerPermId());
+ super.setDatasetPermId(info.getDatasetPermId());
+ super.setExperimentPermId(info.getExperimentPermId());
+ this.tileRows = tileRows;
+ this.tileColumns = tileColumns;
+ this.hasImageSeries = hasImageSeries;
+ }
+
+ public int getTileRows()
+ {
+ return tileRows;
+ }
+
+ public int getTileColumns()
+ {
+ return tileColumns;
+ }
+
+ public boolean hasImageSeries()
+ {
+ return hasImageSeries;
+ }
+}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseVersionHolder.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseVersionHolder.java
index 16f79dcb957..17cd546d209 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseVersionHolder.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ImagingDatabaseVersionHolder.java
@@ -28,7 +28,7 @@ public class ImagingDatabaseVersionHolder implements IDatabaseVersionHolder
public String getDatabaseVersion()
{
- return "004"; // changed in S86
+ return "005"; // changed in S88
}
}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateStorageProcessor.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateStorageProcessor.java
index f4be0d65f92..e82fc4ec2b9 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateStorageProcessor.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/PlateStorageProcessor.java
@@ -205,16 +205,26 @@ public final class PlateStorageProcessor extends AbstractStorageProcessor
// ---------------------------------
- private ScreeningContainerDatasetInfo createScreeningDatasetInfo(Experiment experiment,
- DataSetInformation dataSetInformation)
+ private ImageDatasetInfo createImageDatasetInfo(Experiment experiment,
+ DataSetInformation dataSetInformation, HCSImageFileExtractionResult extractionResult)
{
ScreeningContainerDatasetInfo info =
ScreeningContainerDatasetInfo.createScreeningDatasetInfo(dataSetInformation);
+ boolean hasImageSeries = hasImageSeries(extractionResult.getImages());
+ return new ImageDatasetInfo(info, spotGeometry.getRows(), spotGeometry.getColumns(),
+ hasImageSeries);
+ }
- info.setTileRows(spotGeometry.getRows());
- info.setTileColumns(spotGeometry.getColumns());
-
- return info;
+ private boolean hasImageSeries(List<AcquiredPlateImage> images)
+ {
+ for (AcquiredPlateImage image : images)
+ {
+ if (image.tryGetTimePoint() != null || image.tryGetDepth() != null)
+ {
+ return true;
+ }
+ }
+ return false;
}
private PlateDimension getPlateGeometry(final DataSetInformation dataSetInformation)
@@ -506,8 +516,8 @@ public final class PlateStorageProcessor extends AbstractStorageProcessor
private void storeInDatabase(Experiment experiment, DataSetInformation dataSetInformation,
HCSImageFileExtractionResult extractionResult)
{
- ScreeningContainerDatasetInfo info =
- createScreeningDatasetInfo(experiment, dataSetInformation);
+ ImageDatasetInfo info =
+ createImageDatasetInfo(experiment, dataSetInformation, extractionResult);
if (currentTransaction != null)
{
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfo.java
index e2665aa68bb..202b9868ba8 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfo.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfo.java
@@ -39,8 +39,6 @@ public class ScreeningContainerDatasetInfo
private int containerRows, containerColumns;
- private int tileRows, tileColumns;
-
public String getExperimentPermId()
{
return experimentPermId;
@@ -91,26 +89,6 @@ public class ScreeningContainerDatasetInfo
this.containerColumns = containerColumns;
}
- public int getTileRows()
- {
- return tileRows;
- }
-
- public void setTileRows(int tileRows)
- {
- this.tileRows = tileRows;
- }
-
- public int getTileColumns()
- {
- return tileColumns;
- }
-
- public void setTileColumns(int tileColumns)
- {
- this.tileColumns = tileColumns;
- }
-
public static ScreeningContainerDatasetInfo createScreeningDatasetInfo(
DataSetInformation dataSetInformation)
{
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfoHelper.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfoHelper.java
index 1950bf52606..d8c418fc7c7 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfoHelper.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/ScreeningContainerDatasetInfoHelper.java
@@ -49,18 +49,21 @@ public class ScreeningContainerDatasetInfoHelper
return getOrCreateExperimentAndContainer(dao, info);
}
- public long createDataset(long contId, ScreeningContainerDatasetInfo info)
+ public long createFeatureVectorDataset(long contId, ScreeningContainerDatasetInfo info)
{
- return createDataset(dao, info, contId);
+ boolean isMultidimensional = false;
+ ImgDatasetDTO dataset =
+ new ImgDatasetDTO(info.getDatasetPermId(), 0, 0, contId, isMultidimensional);
+ return dao.addDataset(dataset);
}
// Package-visible static methods
- public static long createDataset(IImagingQueryDAO dao, ScreeningContainerDatasetInfo info,
- long contId)
+
+ public static long createImageDataset(IImagingQueryDAO dao, ImageDatasetInfo info, long contId)
{
ImgDatasetDTO dataset =
new ImgDatasetDTO(info.getDatasetPermId(), info.getTileRows(), info
- .getTileColumns(), contId);
+ .getTileColumns(), contId, info.hasImageSeries());
return dao.addDataset(dataset);
}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorUploader.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorUploader.java
index 93a7ac8d55f..cf03d77e198 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorUploader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorUploader.java
@@ -49,7 +49,7 @@ public class FeatureVectorUploader
{
ScreeningContainerDatasetInfoHelper helper = new ScreeningContainerDatasetInfoHelper(dao);
long contId = helper.getOrCreateExperimentAndContainer(info).getContainerId();
- long dataSetId = helper.createDataset(contId, info);
+ long dataSetId = helper.createFeatureVectorDataset(contId, info);
uploadFeatureVectors(dao, fvecs, dataSetId);
}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellImages.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellImages.java
index a7903535a17..c8c722b2393 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellImages.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellImages.java
@@ -41,11 +41,15 @@ public class WellImages
private final WellLocation location;
+ // has timepoints or depth stack?
+ private final boolean isMultidimensional;
+
public WellImages(PlateImageParameters imageParams, String downloadUrl, WellLocation location)
{
this.tileRowsNum = imageParams.getTileRowsNum();
this.tileColsNum = imageParams.getTileColsNum();
this.channelsNames = imageParams.getChannelsNames();
+ this.isMultidimensional = imageParams.isMultidimensional();
this.datasetCode = imageParams.getDatasetCode();
this.downloadUrl = downloadUrl;
this.location = location;
@@ -85,4 +89,9 @@ public class WellImages
{
return datasetCode;
}
+
+ public boolean isMultidimensional()
+ {
+ return isMultidimensional;
+ }
}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateImageParametersFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateImageParametersFactory.java
index 87f34c1e828..844206a7169 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateImageParametersFactory.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateImageParametersFactory.java
@@ -45,6 +45,7 @@ public class PlateImageParametersFactory
params.setColsNum(plateGeometry.getColumns());
params.setTileRowsNum(wellGeometry.getRows());
params.setTileColsNum(wellGeometry.getColumns());
+ params.setIsMultidimensional(loader.isMultidimensional());
List<String> escapedChannelNames = new ArrayList<String>();
for (String name : channelsNames)
{
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/PlateImageParameters.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/PlateImageParameters.java
index d220609c506..5f3dbc41fcd 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/PlateImageParameters.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/PlateImageParameters.java
@@ -40,6 +40,9 @@ public class PlateImageParameters implements IsSerializable
private List<String> channelsNames;
+ // true if any well in the dataset has a time series (or depth stack) of images
+ private boolean isMultidimensional;
+
public int getRowsNum()
{
return rowsNum;
@@ -105,4 +108,14 @@ public class PlateImageParameters implements IsSerializable
return channelsNames.size();
}
+ public boolean isMultidimensional()
+ {
+ return isMultidimensional;
+ }
+
+ public void setIsMultidimensional(boolean isMultidimensional)
+ {
+ this.isMultidimensional = isMultidimensional;
+ }
+
}
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java
index 5b27abff787..eb86a4ad9d1 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java
@@ -110,4 +110,9 @@ public class HCSDatasetLoader implements IHCSDatasetLoader
}
return channelNames;
}
+
+ public boolean isMultidimensional()
+ {
+ return dataset.getIsMultidimensional();
+ }
}
\ No newline at end of file
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java
index 14feaf5983a..c8c5c933b13 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java
@@ -37,4 +37,6 @@ public interface IHCSDatasetLoader
List<String> getChannelsNames();
+ boolean isMultidimensional();
+
}
\ No newline at end of file
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/IImagingQueryDAO.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/IImagingQueryDAO.java
index 3be6357d8d2..2215a84ca86 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/IImagingQueryDAO.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/IImagingQueryDAO.java
@@ -132,9 +132,9 @@ public interface IImagingQueryDAO extends TransactionQuery
+ "(?{1.permId}, ?{1.numberOfColumns}, ?{1.numberOfRows}, ?{1.experimentId}) returning ID")
public long addContainer(ImgContainerDTO container);
- @Select("insert into DATA_SETS (PERM_ID, FIELDS_WIDTH, FIELDS_HEIGHT, CONT_ID) values "
+ @Select("insert into DATA_SETS (PERM_ID, FIELDS_WIDTH, FIELDS_HEIGHT, CONT_ID, IS_MULTIDIMENSIONAL) values "
+ "(?{1.permId}, ?{1.fieldNumberOfColumns}, "
- + "?{1.fieldNumberOfRows}, ?{1.containerId}) returning ID")
+ + "?{1.fieldNumberOfRows}, ?{1.containerId}, ?{1.isMultidimensional}) returning ID")
public long addDataset(ImgDatasetDTO dataset);
@Select("insert into SPOTS (X, Y, CONT_ID, PERM_ID) values "
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgDatasetDTO.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgDatasetDTO.java
index 58cf4871a10..0cdc5b7e641 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgDatasetDTO.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgDatasetDTO.java
@@ -41,6 +41,11 @@ public class ImgDatasetDTO extends AbstractHashable
@ResultColumn("CONT_ID")
private long containerId;
+ // a redundant information if there are timepoint or depth stack data for any spots in this
+ // dataset
+ @ResultColumn("IS_MULTIDIMENSIONAL")
+ private boolean isMultidimensional;
+
@SuppressWarnings("unused")
private ImgDatasetDTO()
{
@@ -48,12 +53,13 @@ public class ImgDatasetDTO extends AbstractHashable
}
public ImgDatasetDTO(String permId, Integer fieldNumberOfRowsOrNull,
- Integer fieldNumberOfColumnsOrNull, long containerId)
+ Integer fieldNumberOfColumnsOrNull, long containerId, boolean isMultidimensional)
{
this.permId = permId;
this.fieldNumberOfColumnsOrNull = fieldNumberOfColumnsOrNull;
this.fieldNumberOfRowsOrNull = fieldNumberOfRowsOrNull;
this.containerId = containerId;
+ this.isMultidimensional = isMultidimensional;
}
public long getId()
@@ -106,4 +112,13 @@ public class ImgDatasetDTO extends AbstractHashable
this.containerId = containerId;
}
+ public boolean getIsMultidimensional()
+ {
+ return isMultidimensional;
+ }
+
+ public void setMultidimensional(boolean isMultidimensional)
+ {
+ this.isMultidimensional = isMultidimensional;
+ }
}
diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessorTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessorTest.java
index 6cfc05a3cce..bd5de1755f2 100644
--- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessorTest.java
+++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/etl/genedata/FeatureStorageProcessorTest.java
@@ -90,7 +90,7 @@ public class FeatureStorageProcessorTest extends AbstractFileSystemTestCase
one(dao).tryGetContainerIdPermId(CONTAINER_PERM_ID);
will(returnValue((long) 1));
- ImgDatasetDTO dataSetDTO = new ImgDatasetDTO(DATA_SET_PERM_ID, 3, 2, 1);
+ ImgDatasetDTO dataSetDTO = new ImgDatasetDTO(DATA_SET_PERM_ID, 3, 2, 1, false);
dataSetDTO.setId(1);
one(dao).tryGetDatasetByPermId(DATA_SET_PERM_ID);
will(returnValue(dataSetDTO));
diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisMergedRowsReportingPluginTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisMergedRowsReportingPluginTest.java
index 111f1106b35..3d90f3cad96 100644
--- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisMergedRowsReportingPluginTest.java
+++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ImageAnalysisMergedRowsReportingPluginTest.java
@@ -165,7 +165,7 @@ public class ImageAnalysisMergedRowsReportingPluginTest extends AssertJUnit
private ImgDatasetDTO createDataSet(long id)
{
- ImgDatasetDTO datasetDTO = new ImgDatasetDTO("ds" + id, null, null, 100 + id);
+ ImgDatasetDTO datasetDTO = new ImgDatasetDTO("ds" + id, null, null, 100 + id, false);
datasetDTO.setId(id);
return datasetDTO;
}
diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java
index cfee975dad3..f04be63eec0 100644
--- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java
+++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java
@@ -196,7 +196,8 @@ public class DssServiceRpcScreeningTest extends AssertJUnit
{
String permID = "ds" + dataSetID;
one(dao).tryGetDatasetByPermId(permID);
- ImgDatasetDTO dataSet = new ImgDatasetDTO(permID, null, null, 100 + dataSetID);
+ ImgDatasetDTO dataSet =
+ new ImgDatasetDTO(permID, null, null, 100 + dataSetID, false);
dataSet.setId(dataSetID);
will(returnValue(dataSet));
diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/FeatureVectorDAOTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/FeatureVectorDAOTest.java
index fdc7524e893..eafbf6a7be6 100644
--- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/FeatureVectorDAOTest.java
+++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/FeatureVectorDAOTest.java
@@ -76,7 +76,7 @@ public class FeatureVectorDAOTest extends AbstractDBTest
final Integer fieldsWidth = 1;
final Integer fieldsHeight = 2;
final ImgDatasetDTO ds =
- new ImgDatasetDTO(DS_PERM_ID, fieldsHeight, fieldsWidth, containerId);
+ new ImgDatasetDTO(DS_PERM_ID, fieldsHeight, fieldsWidth, containerId, false);
final long datasetId = imagingDao.addDataset(ds);
ds.setId(datasetId);
diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImagingQueryDAOTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImagingQueryDAOTest.java
index cebff7e0f88..e43394408cf 100644
--- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImagingQueryDAOTest.java
+++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImagingQueryDAOTest.java
@@ -210,7 +210,7 @@ public class ImagingQueryDAOTest extends AbstractDBTest
final Integer fieldsWidth = 1;
final Integer fieldsHeight = 2;
final ImgDatasetDTO dataset =
- new ImgDatasetDTO(permId, fieldsHeight, fieldsWidth, containerId);
+ new ImgDatasetDTO(permId, fieldsHeight, fieldsWidth, containerId, false);
final long datasetId = dao.addDataset(dataset);
final ImgDatasetDTO loadedDataset = dao.tryGetDatasetByPermId(DS_PERM_ID);
--
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