From cd3466d13ffad3620ff6f763d8391eca805a7651 Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Mon, 12 Jul 2010 13:22:56 +0000
Subject: [PATCH] [LMS-1634] added sample code column
SVN: 16985
---
.../dss/plugins/IlluminaSummaryReportingPlugin.java | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java
index 4dc748e572b..d97ccb65a13 100644
--- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java
+++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/plugins/IlluminaSummaryReportingPlugin.java
@@ -53,6 +53,7 @@ public class IlluminaSummaryReportingPlugin extends AbstractDatastorePlugin impl
public TableModel createReport(List<DatasetDescription> datasets)
{
SimpleTableModelBuilder builder = new SimpleTableModelBuilder();
+ builder.addHeader("Sample Code");
builder.addHeader("Clusters");
builder.addHeader("Clusters (PF)");
builder.addHeader("Yield (kbases)");
@@ -74,7 +75,7 @@ public class IlluminaSummaryReportingPlugin extends AbstractDatastorePlugin impl
{
File file = files.get(0);
IlluminaSummary summary = new IlluminaSummaryXMLLoader(false).readSummaryXML(file);
- describeSummary(builder, summary);
+ describeSummary(builder, summary, dataset);
} else
{
throw new EnvironmentFailureException(String.format(
@@ -83,14 +84,16 @@ public class IlluminaSummaryReportingPlugin extends AbstractDatastorePlugin impl
}
}
- private static void describeSummary(SimpleTableModelBuilder builder, IlluminaSummary summary)
+ private static void describeSummary(SimpleTableModelBuilder builder, IlluminaSummary summary,
+ DatasetDescription dataset)
{
ChipResultsSummary chipResultSummary = summary.getChipResultsSummary();
List<ISerializableComparable> row =
Arrays.<ISerializableComparable> asList(
- new StringTableCell(chipResultSummary.getClusterCountPF()),
- new StringTableCell(chipResultSummary.getClusterCountRaw()),
- new StringTableCell(chipResultSummary.getYield()));
+ new StringTableCell(dataset.getSampleCode()), new StringTableCell(
+ chipResultSummary.getClusterCountPF()), new StringTableCell(
+ chipResultSummary.getClusterCountRaw()), new StringTableCell(
+ chipResultSummary.getYield()));
builder.addRow(row);
}
--
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