diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/elnTypes.py b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/elnTypes.py
index bf429e989588e5dcfc7708605cdab7f5519182ef..ecf4c7a39e673c742524de51a83e9efb2f478e74 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/elnTypes.py
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/elnTypes.py
@@ -860,6 +860,13 @@ FLY = [FIRST_TIME_VERSIONED, True, True, "FLY", "", [
[FIRST_TIME_VERSIONED, "ANNOTATIONS_STATE", "Comments", "Annotations State", DataType.XML, None, "Annotations State", "ANNOTATIONS_FLY", None]
]];
+SEARCH_QUERY = [MANDATORY_ITEM_VERSION, True, True, "SEARCH_QUERY", "Used to store saved search queries", [
+ [MANDATORY_ITEM_VERSION, "NAME", "General", "Name", DataType.VARCHAR, None, "Name", None, None],
+ [MANDATORY_ITEM_VERSION, "CRITERIA", "General", "Criteria", DataType.XML, None, "Criteria", None, None],
+ [MANDATORY_ITEM_VERSION, "XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users", "COMMENTS_SAMPLE", None],
+ [MANDATORY_ITEM_VERSION, "ANNOTATIONS_STATE", "Comments", "Annotations State", DataType.XML, None, "Annotations State", "ANNOTATIONS_CHEMICAL", None]
+ ]];
+
##
## Sample Types - Non Materials
##
@@ -1048,4 +1055,4 @@ ORDER = [MANDATORY_ITEM_VERSION, False, True, "ORDER", "", [
[MANDATORY_ITEM_VERSION, "ADDITIONAL_INFORMATION", "General", "Additional Information", DataType.VARCHAR, None, "Additional Information", None, None],
[MANDATORY_ITEM_VERSION, "ANNOTATIONS_STATE", "Comments", "Annotations State", DataType.XML, None, "Annotations State", None, None],
[MANDATORY_ITEM_VERSION, "ORDER_STATE", "Comments", "Order State", DataType.VARCHAR, None, "Order State", None, None, None, False]
- ]];
\ No newline at end of file
+ ]];
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/initializemasterdataminimum.py b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/initializemasterdataminimum.py
index fe2669761f80c3211950f8633bea2ceb6cd18177..c2be900823e32d9589eef062899f6512b12d18db 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/initializemasterdataminimum.py
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/initializemasterdataminimum.py
@@ -63,6 +63,7 @@ def initBasicMasterData(tr):
## Sample Types - Non Materials
##
elnTypes.createSampleTypeWithProperties(tr, elnTypes.GENERAL_ELN_SETTINGS);
+ elnTypes.createSampleTypeWithProperties(tr, elnTypes.SEARCH_QUERY);
elnTypes.createSampleTypeWithProperties(tr, elnTypes.EXPERIMENTAL_STEP);
elnTypes.createSampleTypeWithProperties(tr, elnTypes.STORAGE_RACK);
elnTypes.createSampleTypeWithProperties(tr, elnTypes.STORAGE_POSITION);
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/css/style.css b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/css/style.css
index cdc1d86362db61fcf37555301eaefef6427e93de..14e79791d056613412d8bb6f82fb8d49150afed9 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/css/style.css
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/css/style.css
@@ -18,14 +18,18 @@
* Placeholder Patch
* https://github.com/select2/select2/issues/291
*/
-.select2-selection--multiple .select2-search--inline .select2-search__field {
-width: auto !important;
-}
/*
* General Overrides
*/
+.select2-container .select2-selection__rendered > *:first-child.select2-search--inline {
+ width: 100% !important;
+}
+.select2-container .select2-selection__rendered > *:first-child.select2-search--inline .select2-search__field {
+ width: 100% !important;
+}
+
.form-group {
margin-bottom: 5px;
}
@@ -745,4 +749,4 @@ span.fancytree-custom-icon {
background-repeat: no-repeat;
background-position: 0 0;
margin-left: .5em;
-}
\ No newline at end of file
+}
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/ELNDictionary.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/ELNDictionary.js
index 58dedcee5d42c7d45602cf8877bce9ca4fc03e32..8db94a714886760dc0e5d203b912e316aa117baa 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/ELNDictionary.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/ELNDictionary.js
@@ -62,3 +62,9 @@ ELNDictionary.settingsView = {
},
}
}
+
+ELNDictionary.generatedObjects = {
+ searchQueriesProject: {
+ description: 'Generated by ELN for stored search queries.'
+ }
+}
\ No newline at end of file
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/Profile.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/Profile.js
index c8518d38538fe11ea21e8448eb0d6303dcfa7d22..42f079f722fad466df5ab41dd0fd677ea9a575a8 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/Profile.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/config/Profile.js
@@ -229,7 +229,20 @@ $.extend(DefaultProfile.prototype, {
callback();
});
}
-
+
+ this.getHomeSpace = function(defaultToUsername, callback) {
+ mainController.serverFacade.getPersons([mainController.serverFacade.getUserId()], function(persons) {
+ var HOME_SPACE = null;
+ if(persons !== null) {
+ HOME_SPACE = (persons[0].getSpace()?persons[0].getSpace().getCode():null);
+ }
+ if(HOME_SPACE === null && defaultToUsername) {
+ HOME_SPACE = mainController.serverFacade.getUserId().toUpperCase();
+ }
+ callback(HOME_SPACE);
+ });
+ }
+
this.getSampleConfigSpacePrefix = function(sample) {
var prefix = null;
var spaceCode = sample.spaceCode;
@@ -1115,4 +1128,4 @@ $.extend(DefaultProfile.prototype, {
});
}
}
-});
\ No newline at end of file
+});
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/server/ServerFacade.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/server/ServerFacade.js
index cd600c62a48fb79c32b37f4bc6802390ab8e55ce..4495e2483365e33cbf1c286076a3c1b4b00ad7f6 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/server/ServerFacade.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/server/ServerFacade.js
@@ -442,26 +442,22 @@ function ServerFacade(openbisServer) {
this.deleteSamples = function(samplePermIds, reason, callback, confirmDeletions) {
require(["as/dto/sample/id/SamplePermId", "as/dto/sample/delete/SampleDeletionOptions" ],
- function(SamplePermId, SampleDeletionOptions) {
- var samplePermIdsObj = [];
- for(var sPIdx = 0; sPIdx < samplePermIds.length; sPIdx++) {
- samplePermIdsObj.push(new SamplePermId(samplePermIds[sPIdx]));
- }
-
- var deletionOptions = new SampleDeletionOptions();
- deletionOptions.setReason(reason);
-
- // logical deletion (move objects to the trash can)
- mainController.openbisV3.deleteSamples(samplePermIdsObj, deletionOptions).done(function(deletionId) {
- if(confirmDeletions) {
- // Confirm deletion of samples
- mainController.openbisV3.confirmDeletions([deletionId]).then(function() {
- callback({});
- });
- } else {
- callback(deletionId);
- }
- });
+ function(SamplePermId, SampleDeletionOptions) {
+ var samplePermIdsObj = samplePermIds.map(function(permId) { return new SamplePermId(permId)});
+ var deletionOptions = new SampleDeletionOptions();
+ deletionOptions.setReason(reason);
+
+ // logical deletion (move objects to the trash can)
+ mainController.openbisV3.deleteSamples(samplePermIdsObj, deletionOptions).done(function(deletionId) {
+ if(confirmDeletions) {
+ // Confirm deletion of samples
+ mainController.openbisV3.confirmDeletions([deletionId]).then(function() {
+ callback({});
+ });
+ } else {
+ callback(deletionId);
+ }
+ });
});
}
@@ -2163,26 +2159,196 @@ function ServerFacade(openbisServer) {
}
//
- // V3 Save Functions
+ // V3 Functions
//
- this.updateSample = function(sampleV1, callbackFunction) {
- require([ "as/dto/sample/update/SampleUpdate", "as/dto/sample/id/SamplePermId"],
- function(SampleUpdate, SamplePermId) {
- var sampleUpdate = new SampleUpdate();
- sampleUpdate.setSampleId(new SamplePermId(sampleV1.permId));
-
- for(var propertyCode in sampleV1.properties) {
- sampleUpdate.setProperty(propertyCode, sampleV1.properties[propertyCode]);
+ this.getProject = function(projectIdentifier, callbackFunction) {
+ require(["as/dto/project/id/ProjectIdentifier", "as/dto/project/fetchoptions/ProjectFetchOptions"],
+ function(ProjectIdentifier, ProjectFetchOptions) {
+ var projectId = new ProjectIdentifier(projectIdentifier);
+ var fetchOptions = new ProjectFetchOptions();
+
+ mainController.openbisV3.getProjects([projectId], fetchOptions).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
}
+ );
+ }
- mainController.openbisV3.updateSamples([ sampleUpdate ]).done(function() {
- callbackFunction(true);
- }).fail(function(result) {
+ this.searchSamplesV3 = function(sampleType, callbackFunction) {
+ require(["as/dto/sample/search/SampleSearchCriteria", "as/dto/sample/fetchoptions/SampleFetchOptions"],
+ function(SampleSearchCriteria, SampleFetchOptions) {
+ var searchCriteria = new SampleSearchCriteria();
+ searchCriteria.withType().withCode().thatEquals(sampleType);
+ var fetchOptions = new SampleFetchOptions();
+ fetchOptions.withProperties();
+ fetchOptions.withExperiment().withProject().withSpace();
+ fetchOptions.withRegistrator();
+ fetchOptions.sortBy().modificationDate().desc();
+ mainController.openbisV3.searchSamples(searchCriteria, fetchOptions).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
Util.showError("Call failed to server: " + JSON.stringify(result));
callbackFunction(false);
});
- });
+ });
+ }
+
+ this.getSamples = function(permIds, callbackFunction) {
+ require(["as/dto/sample/id/SamplePermId", "as/dto/sample/fetchoptions/SampleFetchOptions"],
+ function(SamplePermId, SampleFetchOptions) {
+ var samplePermIds = permIds.map(function(permId) { return new SamplePermId(permId) });
+ var fetchOptions = new SampleFetchOptions();
+ fetchOptions.withProperties();
+ fetchOptions.withExperiment().withProject().withSpace();
+ fetchOptions.withRegistrator();
+ fetchOptions.sortBy().modificationDate().desc();
+ mainController.openbisV3.getSamples(samplePermIds, fetchOptions).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ }
+ );
+ }
+
+ this.createSample = function(sampleType, experiment, properties, callbackFunction) {
+ require(["as/dto/sample/create/SampleCreation", "as/dto/entitytype/id/EntityTypePermId",
+ "as/dto/experiment/id/ExperimentPermId", "as/dto/space/id/SpacePermId"],
+ function(SampleCreation, EntityTypePermId, ExperimentPermId, SpacePermId) {
+ var experimentPermId = experiment.permId.permId;
+ var space = experiment.project.space.code;
+ var sampleCreation = new SampleCreation();
+ sampleCreation.setTypeId(new EntityTypePermId(sampleType));
+ sampleCreation.setExperimentId(new ExperimentPermId(experimentPermId));
+ sampleCreation.setSpaceId(new SpacePermId(space));
+ if (properties) {
+ for (var property in properties) {
+ if (properties.hasOwnProperty(property)) {
+ sampleCreation.setProperty(property, properties[property]);
+ }
+ }
+ }
+
+ mainController.openbisV3.createSamples([sampleCreation]).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ });
+
+ }
+
+ this.createProject = function(space, code, description, callbackFunction) {
+ require(["as/dto/project/create/ProjectCreation", "as/dto/space/id/SpacePermId"],
+ function(ProjectCreation, SpacePermId) {
+ var projectCreation = new ProjectCreation();
+ projectCreation.setSpaceId(new SpacePermId(space));
+ projectCreation.setCode(code);
+ projectCreation.setDescription(description);
+
+ mainController.openbisV3.createProjects([projectCreation]).done(function(result) {
+ callbackFunction(true);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ });
+ }
+
+ this.searchExperimentTypes = function(experimentTypeCode, callbackFunction) {
+ require(["as/dto/experiment/search/ExperimentTypeSearchCriteria", "as/dto/experiment/fetchoptions/ExperimentTypeFetchOptions"],
+ function(ExperimentTypeSearchCriteria, ExperimentTypeFetchOptions) {
+ var searchCriteria = new ExperimentTypeSearchCriteria();
+ var fetchOptions = new ExperimentTypeFetchOptions();
+ searchCriteria.withCode().thatEquals(experimentTypeCode);
+
+ mainController.openbisV3.searchExperimentTypes(searchCriteria, fetchOptions).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ }
+ );
+ }
+
+ this.getExperiments = function(experimentPermIds, callbackFunction) {
+ require(["as/dto/experiment/id/ExperimentPermId", "as/dto/experiment/fetchoptions/ExperimentFetchOptions"],
+ function(ExperimentPermId, ExperimentFetchOptions) {
+ var expPermIds = experimentPermIds.map(function(permId) { return new ExperimentPermId(permId)});
+ var fetchOptions = new ExperimentFetchOptions();
+ fetchOptions.withProject().withSpace();
+
+ mainController.openbisV3.getExperiments(expPermIds, fetchOptions).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ }
+ );
+ }
+
+ this.searchExperiments = function(projectCode, experimentCode, callbackFunction) {
+ require(["as/dto/experiment/search/ExperimentSearchCriteria", "as/dto/experiment/fetchoptions/ExperimentFetchOptions"],
+ function(ExperimentSearchCriteria, ExperimentFetchOptions) {
+ var searchCriteria = new ExperimentSearchCriteria();
+ var fetchOptions = new ExperimentFetchOptions();
+ searchCriteria.withProject().withCode().thatEquals(projectCode);
+ searchCriteria.withCode().thatEquals(experimentCode);
+ fetchOptions.withProject().withSpace();
+
+ mainController.openbisV3.searchExperiments(searchCriteria, fetchOptions).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ }
+ );
+ }
+
+ this.createExperiment = function(experimentTypePermId, projectIdentifier, code, callbackFunction) {
+ require(["as/dto/experiment/create/ExperimentCreation", "as/dto/project/id/ProjectIdentifier", "as/dto/entitytype/id/EntityTypePermId"],
+ function(ExperimentCreation, ProjectIdentifier, EntityTypePermId) {
+ var experimentCreation = new ExperimentCreation();
+ experimentCreation.setTypeId(new EntityTypePermId(experimentTypePermId));
+ experimentCreation.setProjectId(new ProjectIdentifier(projectIdentifier));
+ experimentCreation.setCode(code);
+
+ mainController.openbisV3.createExperiments([experimentCreation]).done(function(result) {
+ callbackFunction(result);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ }
+ );
+ }
+
+ this.updateSample = function(sampleV1, callbackFunction) {
+ require([ "as/dto/sample/update/SampleUpdate", "as/dto/sample/id/SamplePermId"],
+ function(SampleUpdate, SamplePermId) {
+ var sampleUpdate = new SampleUpdate();
+ sampleUpdate.setSampleId(new SamplePermId(sampleV1.permId));
+ for(var propertyCode in sampleV1.properties) {
+ sampleUpdate.setProperty(propertyCode, sampleV1.properties[propertyCode]);
+ }
+
+ mainController.openbisV3.updateSamples([ sampleUpdate ]).done(function() {
+ callbackFunction(true);
+ }).fail(function(result) {
+ Util.showError("Call failed to server: " + JSON.stringify(result));
+ callbackFunction(false);
+ });
+ }
+ );
}
this.updateDataSet = function(dataSetPermId, newPhysicalData, callbackFunction) {
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/util/FormUtil.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/util/FormUtil.js
index 033403ce3159c073c13fcdbd9ee499ff77be1aab..6dd24d4506e925591ddf72e21dc74da723f532a8 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/util/FormUtil.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/util/FormUtil.js
@@ -1299,6 +1299,7 @@ var FormUtil = new function() {
// params.buttons: array of buttons
// params.css: css as a map
// params.callback: function to be called on submit
+ // params.onBlock: function to be called when dialog is rendered
this.showDialog = function(params) {
var $window = $('<form>', { 'action' : 'javascript:void(0);' });
@@ -1320,6 +1321,9 @@ var FormUtil = new function() {
if (params.focuseComponent) {
params.focuseComponent.focus();
}
+ if (params.onBlock) {
+ params.onBlock();
+ }
});
}
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchController.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchController.js
index 307e6bb426f8d209509930c3c47a2a9ac78ac722..25b7daad6b40f0d9659da200406abfc2444bc26a 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchController.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchController.js
@@ -21,9 +21,11 @@ function AdvancedSearchController(mainController, forceSearch) {
this.init = function(views) {
var _this = this;
- _this._advancedSearchView.repaint(views);
+ this._loadSavedSearches(function() {
+ _this._advancedSearchView.repaint(views);
+ });
}
-
+
this.search = function() {
var criteria = this._advancedSearchModel.criteria;
var numberOfGeneralRules = 0;
@@ -217,4 +219,184 @@ function AdvancedSearchController(mainController, forceSearch) {
}
}
}
-}
\ No newline at end of file
+
+ //
+ // query loading / saving
+ //
+
+ this.selectSavedSearch = function(selcetedSavedSearchIndex) {
+ var savedSearch = this._advancedSearchModel.savedSearches[selcetedSavedSearchIndex];
+ this._advancedSearchModel.selcetedSavedSearchIndex = selcetedSavedSearchIndex;
+ this._advancedSearchModel.criteria = savedSearch.criteria;
+ this._advancedSearchModel.forceLoadCriteria = true;
+ this._advancedSearchView.repaintContent();
+ }
+
+ // params.name
+ // params.experiment
+ this.saveNewSample = function(params, callback) {
+ var _this = this;
+ var criteria = _this._getSerializedCriteria();
+
+ this._ensureProjectAndExperiment(params.experiment, function(experiment) {
+ _this._doIfAdmin(experiment, function() {
+ _this._mainController.serverFacade.createSample('SEARCH_QUERY', experiment, {
+ NAME: params.name,
+ CRITERIA: criteria,
+ }, function(result) {
+ var permId = result[0].permId;
+ _this._mainController.serverFacade.getSamples([permId], function(result) {
+ if (result[permId]) {
+ var savedSearch = _this._sampleToSavedSearch(result[permId]);
+ _this._advancedSearchModel.savedSearches.push(savedSearch);
+ _this.selectSavedSearch(_this._advancedSearchModel.savedSearches.length - 1);
+ }
+ callback();
+ });
+ });
+ });
+ });
+ }
+
+ this.updateSelectedSample = function(callback) {
+ var _this = this;
+ var criteria = _this._getSerializedCriteria();
+ var savedSearch = _this._advancedSearchModel.savedSearches[_this._advancedSearchModel.selcetedSavedSearchIndex];
+ _this._doIfAdmin(savedSearch.sample.experiment, function() {
+ _this._mainController.serverFacade.updateSample({
+ permId: savedSearch.sample.permId.permId,
+ properties: {
+ CRITERIA: criteria,
+ },
+ }, function(success) {
+ if (success) {
+ Util.showSuccess('Search updated.');
+ }
+ callback();
+ });
+ });
+ }
+
+ this.delete = function(selcetedSavedSearchIndex, callback) {
+ var _this = this;
+ var savedSearch = _this._advancedSearchModel.savedSearches[selcetedSavedSearchIndex];
+ this._mainController.serverFacade.deleteSamples(
+ [savedSearch.sample.permId.permId],
+ 'Search query deletion by user',
+ function(deletionId) {
+ if (deletionId) {
+ _this._advancedSearchModel.selcetedSavedSearchIndex = -1;
+ Util.showSuccess('Search deleted.');
+ _this._loadSavedSearches(function() {
+ _this._advancedSearchView.repaintContent();
+ });
+ }
+ callback();
+ }
+ );
+ }
+
+ this._loadSavedSearches = function(callback) {
+ var _this = this;
+ this._mainController.serverFacade.searchSamplesV3('SEARCH_QUERY', function(result) {
+ _this._advancedSearchModel.savedSearches = [];
+ if(result != null && result.objects != null) {
+ var samples = _this._sortSavedSearchSamples(result.objects);
+ for (var i=0; i<samples.length; i++) {
+ _this._advancedSearchModel.savedSearches.push(_this._sampleToSavedSearch(samples[i]));
+ }
+ }
+ callback();
+ });
+ }
+
+ // puts own samples on top
+ // samples are assumed to already be sorted by date
+ this._sortSavedSearchSamples = function(samples) {
+ var ownSamples = [];
+ var otherSamples = [];
+ for (var i=0; i<samples.length; i++) {
+ if (samples[i].registrator.userId == this._mainController.serverFacade.getUserId()) {
+ ownSamples.push(samples[i]);
+ } else {
+ otherSamples.push(samples[i]);
+ }
+ }
+ return ownSamples.concat(otherSamples);
+ }
+
+ this._ensureProjectAndExperiment = function(experiment, callback) {
+ var _this = this;
+ if (experiment.defaultDummyExperiment) {
+ var dummyExperiment = experiment;
+ _this._mainController.serverFacade.getProject(dummyExperiment.projectIdentifier, function(result) {
+ if ($.isEmptyObject(result)) {
+ var description = ELNDictionary.generatedObjects.searchQueriesProject.description;
+ _this._mainController.serverFacade.createProject(
+ dummyExperiment.space, dummyExperiment.projectCode, description, function(result) {
+ _this._ensureExperiment(dummyExperiment, callback);
+ }
+ );
+ } else {
+ _this._ensureExperiment(experiment, callback);
+ }
+ });
+ } else {
+ _this._loadExperimentWithProjectAndSpace(experiment, callback);
+ }
+ }
+
+ this._loadExperimentWithProjectAndSpace = function(experiment, callback) {
+ this._mainController.serverFacade.getExperiments([experiment.permId.permId], function(result) {
+ callback(result[experiment.permId.permId]);
+ })
+ }
+
+ this._ensureExperiment = function(dummyExperiment, callback) {
+ var _this = this;
+ _this._mainController.serverFacade.searchExperiments(
+ dummyExperiment.projectCode, dummyExperiment.code, function(result) {
+ if (result != null && result.objects != null && result.objects.length > 0) {
+ callback(result.objects[0]);
+ } else {
+ var experimentTypePermId = 'COLLECTION';
+ _this._mainController.serverFacade.createExperiment(
+ experimentTypePermId, dummyExperiment.projectIdentifier, dummyExperiment.code, function(result) {
+ if (result && result.length > 0) {
+ var experimentPermId = result[0].permId;
+ _this._mainController.serverFacade.getExperiments([experimentPermId], function(result) {
+ callback(result[experimentPermId]);
+ });
+ }
+ });
+ }
+ });
+ }
+
+ this._sampleToSavedSearch = function(sample) {
+ return {
+ sample: sample,
+ name: sample.properties.NAME,
+ criteria: JSON.parse(atob(sample.properties.CRITERIA.replace('<criteria>', '').replace('</criteria>', ''))),
+ };
+ }
+
+ this._getSerializedCriteria = function() {
+ return '<criteria>' + btoa(JSON.stringify(this._advancedSearchModel.criteria)) + '</criteria>';
+ }
+
+ this._doIfAdmin = function(experiment, action) {
+ var _this = this;
+ _this._mainController.getUserRole({
+ space: experiment.project.code,
+ project: experiment.project.space.code,
+ }, function(roles) {
+ var hasAdmin = roles.filter(function(role) { return role.indexOf('ADMIN') > -1 }).length > 0;
+ if (hasAdmin) {
+ action();
+ } else {
+ Util.showUserError('You need to be admin in the related space or project to save queries.');
+ }
+ });
+ }
+}
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchModel.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchModel.js
index 638cb193a808d4961151b26ea9c67401d99f035c..0bc09d820013cdd67a1ca9f2a668a6f9bc97fbbc 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchModel.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchModel.js
@@ -23,7 +23,9 @@ function AdvancedSearchModel(forceSearch) {
logicalOperator : null,
rules : { } // { "UUIDv4" : { type : "PROPERTY", name : "GENE", value : "aa" } }
}
-
+ this.savedSearches = []; // [{ sample: v3Sample, name: "name", criteria: { see this.criteria }}, ...]
+ this.selcetedSavedSearchIndex = -1;
+
if(typeof forceSearch === 'object') {
this.criteria = forceSearch;
this.forceLoadCriteria = true;
@@ -50,4 +52,4 @@ function AdvancedSearchModel(forceSearch) {
this.criteria.entityKind = entityKind;
this.criteria.rules = {};
}
-}
\ No newline at end of file
+}
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchView.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchView.js
index 8244e45dc70b90b8b98fff73f966623a26e7bb21..643c801d6f82f8d5d6cfb8f81f0080e39370aca5 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchView.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/AdvancedSearch/AdvancedSearchView.js
@@ -23,6 +23,8 @@ function AdvancedSearchView(advancedSearchController, advancedSearchModel) {
this._$searchCriteriaPanelContainer = null;
this._$tbody = null;
this._$dataGridContainer = null;
+ this._$saveLoadContainer = null;
+ this._$savedSearchesDropdown = null;
//
// Main Repaint Method
@@ -40,7 +42,9 @@ function AdvancedSearchView(advancedSearchController, advancedSearchModel) {
'action' : 'javascript:void(0);'
});
$mainPanelHeader.append($("<h2>").append("Advanced Search"));
- this._paintMenuPanel($mainPanelHeader);
+ this._$saveLoadContainer = $("<div>");
+ $mainPanelHeader.append(this._$saveLoadContainer);
+ this._paintSaveLoadPanel(this._$saveLoadContainer);
$header.append($mainPanelHeader);
//Search Criteria Panel
@@ -70,12 +74,127 @@ function AdvancedSearchView(advancedSearchController, advancedSearchModel) {
}
}
-
+
+ this.repaintContent = function() {
+ this._paintSaveLoadPanel(this._$saveLoadContainer);
+ this._paintCriteriaPanel(this._$searchCriteriaPanelContainer);
+ }
+
//
// Repaint Panels Methods
//
-
- this._paintMenuPanel = function($menuPanelContainer) {
+
+ this._save = function() {
+ var _this = this;
+ profile.getHomeSpace(false, function(HOME_SPACE) {
+
+ Â Â Â Â var $nameField = FormUtil.getTextInputField('Name', 'Name', true);
+
+ Â Â Â Â var $searchDropdownContainer = $('<div>');
+ Â Â Â Â var advancedEntitySearchDropdown = new AdvancedEntitySearchDropdown(false, true, "search entity to store query", true, false, false, false);
+ Â Â Â Â advancedEntitySearchDropdown.init($searchDropdownContainer);
+ if (HOME_SPACE) {
+ Â Â Â Â advancedEntitySearchDropdown.addSelected({
+ Â Â Â Â Â Â defaultDummyExperiment: true,
+ space: HOME_SPACE,
+ code: 'QUERIES_COLLECTION',
+ projectCode: 'QUERIES',
+ projectIdentifier: IdentifierUtil.getProjectIdentifier(HOME_SPACE, 'QUERIES'),
+ Â Â Â Â Â Â identifier: { identifier: IdentifierUtil.getExperimentIdentifier(HOME_SPACE, 'QUERIES', 'QUERIES_COLLECTION') },
+ Â Â Â Â Â Â permId: { permId: 'permId' },
+ Â Â Â Â });
+ }
+
+ Â Â Â Â var $btnSave = $('<input>', { 'type': 'submit', 'class' : 'btn btn-primary', 'value' : 'Save' });
+ Â Â Â Â var $btnCancel = $('<a>', { 'class' : 'btn btn-default' }).append('Cancel');
+ Â Â Â Â $btnCancel.click(function() {
+ Â Â Â Â Â Â Util.unblockUI();
+ Â Â Â Â });
+
+ Â Â Â Â // update existing sample or save new one
+ Â Â Â Â if (_this._advancedSearchModel.selcetedSavedSearchIndex > -1) {
+ Â Â Â Â Â Â Util.blockUI();
+ Â Â Â Â Â Â _this._advancedSearchController.updateSelectedSample(function() {
+ Â Â Â Â Â Â Â Â Util.unblockUI();
+ Â Â Â Â Â Â });
+ Â Â Â Â } else {
+ Â Â Â Â Â Â FormUtil.showDialog({
+ Â Â Â Â Â Â Â Â css: {'text-align': 'left'},
+ Â Â Â Â Â Â Â Â title: 'Save search query',
+ Â Â Â Â Â Â Â Â components: [$nameField, $searchDropdownContainer],
+ Â Â Â Â Â Â Â Â buttons: [$btnSave, $btnCancel],
+ Â Â Â Â Â Â Â Â callback: function() {
+ Â Â Â Â Â Â Â Â Â Â Util.unblockUI();
+ Â Â Â Â Â Â Â Â Â Â Util.blockUI();
+ Â Â Â Â Â Â Â Â Â Â _this._advancedSearchController.saveNewSample({
+ Â Â Â Â Â Â Â Â Â Â Â Â name: $nameField.val(),
+ Â Â Â Â Â Â Â Â Â Â Â Â experiment: advancedEntitySearchDropdown.getSelected()[0],
+ Â Â Â Â Â Â Â Â Â Â }, Util.unblockUI);Â
+ Â Â Â Â Â Â Â Â },
+ Â Â Â Â Â Â });
+ Â Â Â Â }
+
+ });
+ }
+
+ this._delete = function() {
+ var i = this._advancedSearchModel.selcetedSavedSearchIndex;
+ if (i !== null && i > -1) {
+ Util.blockUI();
+ this._advancedSearchController.delete(i, function() {
+ Util.unblockUI();
+ });
+ }
+ }
+
+ this._paintSaveLoadPanel = function($container) {
+ var _this = this;
+ $container.empty();
+
+ var savedSearchOptions = [{
+ label: 'load a saved search',
+ value: -1,
+ disabled: true,
+ selected: _this._advancedSearchModel.selcetedSavedSearchIndex == -1,
+ }];
+ for (var i=0; i<this._advancedSearchModel.savedSearches.length; i++) {
+ var savedSearch = this._advancedSearchModel.savedSearches[i];
+ savedSearchOptions.push({
+ label: savedSearch.name,
+ value: i,
+ selected: _this._advancedSearchModel.selcetedSavedSearchIndex == i,
+ });
+ }
+ this._$savedSearchesDropdown = FormUtil.getPlainDropdown(savedSearchOptions);
+ this._$savedSearchesDropdown.change(function(change) {
+ var i = _this._$savedSearchesDropdown.val();
+ _this._advancedSearchController.selectSavedSearch(i);
+ });
+ $container.append(this._$savedSearchesDropdown);
+ this._$savedSearchesDropdown.select2({
+ width: '400px',
+ theme: "bootstrap"
+ });
+
+ var $buttonSave = FormUtil.getButtonWithIcon('glyphicon-floppy-disk', function() {
+ _this._save();
+ }, 'Save');
+ $buttonSave.css({ 'margin-left': '8px'});
+ $container.append($buttonSave);
+
+ var $buttonDelete = FormUtil.getButtonWithIcon('glyphicon-trash', function() {
+ _this._delete();
+ }, 'Delete');
+ $buttonDelete.css({ 'margin-left': '8px'});
+ var i = this._advancedSearchModel.selcetedSavedSearchIndex;
+ if (i == null || i < 0) {
+ $buttonDelete.attr('disabled', '');
+ }
+ $container.append($buttonDelete);
+
+ }
+
+ this._paintTypeSelectionPanel = function($menuPanelContainer) {
this._$entityTypeDropdown = this._getEntityTypeDropdown();
var entityTypeDropdownFormGroup = FormUtil.getFieldForComponentWithLabel(this._$entityTypeDropdown, "Search For", null, true);
entityTypeDropdownFormGroup.css("width","50%");
@@ -105,9 +224,12 @@ function AdvancedSearchView(advancedSearchController, advancedSearchModel) {
this._paintCriteriaPanel = function($searchCriteriaPanelContainer) {
$searchCriteriaPanelContainer.empty();
$searchCriteriaPanelContainer.append($("<legend>").append("Criteria"));
-
+
+ this._paintTypeSelectionPanel(this._$searchCriteriaPanelContainer);
+
var _this = this;
var $table = $("<table>", { class : "table table-bordered"});
+ $table.css({ 'margin-top': '10px' });
$thead = $("<thead>");
this._$tbody = $("<tbody>");
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/DataSetForm/widgets/AdvancedEntitySearchDropdown.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/DataSetForm/widgets/AdvancedEntitySearchDropdown.js
index f4e736a874123d7a5fd74bbf1ca1b11848115cf4..6dae6dfcfe24c34902d4c4657174de093ff5b7ef 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/DataSetForm/widgets/AdvancedEntitySearchDropdown.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/DataSetForm/widgets/AdvancedEntitySearchDropdown.js
@@ -342,4 +342,4 @@ function AdvancedEntitySearchDropdown( isMultiple,
}
}
-}
\ No newline at end of file
+}
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/SideMenu/SideMenuWidgetView.js b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/SideMenu/SideMenuWidgetView.js
index 4ebfcadbbeca3fa4d8826f4528cc61cfaf017b2e..222598d3b4a3238654e80c7b27495f323957b3d4 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/SideMenu/SideMenuWidgetView.js
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/views/SideMenu/SideMenuWidgetView.js
@@ -264,15 +264,8 @@ function SideMenuWidgetView(sideMenuWidgetController, sideMenuWidgetModel) {
var showLabNotebooks = function(dfd, showEnabled, showDisabled) {
var spaceRules = { entityKind : "SPACE", logicalOperator : "AND", rules : { } };
- mainController.serverFacade.getPersons([mainController.serverFacade.getUserId()], function(persons) {
+ profile.getHomeSpace(true, function(HOME_SPACE) {
mainController.serverFacade.searchForSpacesAdvanced(spaceRules, null, function(searchResult) {
- var HOME_SPACE = null;
- if(persons !== null) {
- HOME_SPACE = (persons[0].getSpace()?persons[0].getSpace().getCode():null);
- }
- if(HOME_SPACE === null) {
- HOME_SPACE = mainController.serverFacade.getUserId().toUpperCase();
- }
var results = [];
var spaces = searchResult.objects;
var nonInventoryNonHiddenSpaces = [];
@@ -315,15 +308,8 @@ function SideMenuWidgetView(sideMenuWidgetController, sideMenuWidgetModel) {
switch(type) {
case "LAB_NOTEBOOK":
var spaceRules = { entityKind : "SPACE", logicalOperator : "AND", rules : { } };
- mainController.serverFacade.getPersons([mainController.serverFacade.getUserId()], function(persons) {
+ profile.getHomeSpace(true, function(HOME_SPACE) {
mainController.serverFacade.searchForSpacesAdvanced(spaceRules, null, function(searchResult) {
- var HOME_SPACE = null;
- if(persons !== null) {
- HOME_SPACE = (persons[0].getSpace()?persons[0].getSpace().getCode():null);
- }
- if(HOME_SPACE === null) {
- HOME_SPACE = mainController.serverFacade.getUserId().toUpperCase();
- }
var results = [];
var spaces = searchResult.objects;
for (var i = 0; i < spaces.length; i++) {
@@ -395,14 +381,18 @@ function SideMenuWidgetView(sideMenuWidgetController, sideMenuWidgetModel) {
mainController.serverFacade.searchForProjectsAdvanced({ entityKind : "PROJECT", logicalOperator : "AND", rules : projectRules }, null, function(searchResult) {
var results = [];
var projects = searchResult.objects;
- for (var i = 0; i < projects.length; i++) {
- var project = projects[i];
- var normalizedProjectTitle = Util.getDisplayNameFromCode(project.code);
- var projectLink = _this.getLinkForNode(normalizedProjectTitle, project.getPermId().getPermId(), "showProjectPageFromPermId", project.getPermId().getPermId());
- results.push({ title : projectLink, entityType: "PROJECT", key : project.getPermId().getPermId(), folder : true, lazy : true, view : "showProjectPageFromPermId", viewData: project.getPermId().getPermId() });
-
- }
- dfd.resolve(results);
+ for (var i = 0; i < projects.length; i++) {
+ var project = projects[i];
+ if (project.code == 'QUERIES' &&
+ project.description == ELNDictionary.generatedObjects.searchQueriesProject.description) {
+ continue;
+ }
+ var normalizedProjectTitle = Util.getDisplayNameFromCode(project.code);
+ var projectLink = _this.getLinkForNode(normalizedProjectTitle, project.getPermId().getPermId(), "showProjectPageFromPermId", project.getPermId().getPermId());
+ results.push({ title : projectLink, entityType: "PROJECT", key : project.getPermId().getPermId(), folder : true, lazy : true, view : "showProjectPageFromPermId", viewData: project.getPermId().getPermId() });
+
+ }
+ dfd.resolve(results);
});
break;
case "PROJECT":
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/4 b/openbis_standard_technologies/dist/core-plugins/eln-lims/4
new file mode 120000
index 0000000000000000000000000000000000000000..56a6051ca2b02b04ef92d5150c9ef600403cb1de
--- /dev/null
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/4
@@ -0,0 +1 @@
+1
\ No newline at end of file