From cc66178fa0221bf15e3b4c62cf168cef2621bb5f Mon Sep 17 00:00:00 2001
From: felmer <franz-josef.elmer@id.ethz.ch>
Date: Mon, 28 Sep 2020 08:09:43 +0200
Subject: [PATCH] SSDM-10264: js-test: removing proteomics and screening
---
.../core-plugins/core-plugins.properties | 2 +-
.../openbis-screening-test/html/index.html | 22 -
.../html/openbis-screening-test.js | 857 ------------------
.../openbis-screening-test/plugin.properties | 3 -
4 files changed, 1 insertion(+), 883 deletions(-)
delete mode 100644 js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html
delete mode 100644 js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js
delete mode 100644 js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties
diff --git a/js-test/servers/common/core-plugins/core-plugins.properties b/js-test/servers/common/core-plugins/core-plugins.properties
index d72e0524c10..4f359488d69 100644
--- a/js-test/servers/common/core-plugins/core-plugins.properties
+++ b/js-test/servers/common/core-plugins/core-plugins.properties
@@ -1,2 +1,2 @@
-enabled-modules = proteomics, screening, illumina-ngs, tests, tests-data-import
+enabled-modules = illumina-ngs, tests, tests-data-import
diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html
deleted file mode 100644
index a79d55c0e91..00000000000
--- a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/index.html
+++ /dev/null
@@ -1,22 +0,0 @@
-<!DOCTYPE html>
-<html>
-<head>
- <meta charset="utf-8">
- <title>Openbis-screening.js test</title>
- <link rel="stylesheet" href="../common-test/qunit.css">
-
- <script src="/openbis/resources/js/jquery.js"></script>
- <script src="/openbis/resources/js/openbis.js"></script>
- <script src="/openbis/resources/js/openbis-screening.js"></script>
- <script src="../common-test/qunit.js"></script>
- <script src="../common-test/qunit-reporter-junit.js"></script>
- <script src="../common-test/common-test.js"></script>
- <script src="openbis-screening-test.js"></script>
-
-</head>
-<body>
- <div id="qunit"></div>
- <div id="qunit-fixture"></div>
- <div id="qunit-junit-report"></div>
-</body>
-</html>
diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js
deleted file mode 100644
index 8a0b360e48a..00000000000
--- a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/html/openbis-screening-test.js
+++ /dev/null
@@ -1,857 +0,0 @@
-/*
- * These tests should be run against openBIS instance
- * with screening sprint server database version
- */
-
-var testProtocol = window.location.protocol;
-var testHost = window.location.hostname;
-var testPort = window.location.port;
-var testUrl = testProtocol + "//" + testHost + ":" + testPort;
-
-var testUserId = "openbis_screening_test_js";
-var testUserPassword = "password";
-
-var createFacadeAndLogin = function(action, urlOrNull, timeoutOrNull){
- var url = typeof urlOrNull == "undefined" ? testUrl : urlOrNull;
- createFacadeAndLoginForUserAndPassword(testUserId, testUserPassword, action, url, timeoutOrNull);
-}
-
-var createExperimentIdentfier = function(identifierString){
- var parts = identifierString.split("/");
-
- return {
- "@type" : "ExperimentIdentifier",
- "spaceCode" : parts[1],
- "projectCode" : parts[2],
- "experimentCode" : parts[3]
- };
-}
-
-var createPlateIdentifier = function(identifierString){
- var parts = identifierString.split("/");
-
- return {
- "@type" : "PlateIdentifier",
- "spaceCodeOrNull" : parts[1],
- "plateCode" : parts[2]
- };
-}
-
-var createMaterialIdentifier = function(identifierString){
- var parts = identifierString.split("/");
-
- return {
- "@type" : "MaterialIdentifierScreening",
- "materialTypeIdentifier" : {
- "@type" : "MaterialTypeIdentifierScreening",
- "materialTypeCode" : parts[1]
- },
- "materialCode" : parts[2]
- };
-}
-
-var createMaterialTypeIdentifier = function(typeCode){
- return {
- "@type" : "MaterialTypeIdentifierScreening",
- "materialTypeCode" : typeCode
- };
-}
-
-var createWellIdentifier = function(permId){
- return {
- "@type" : "WellIdentifier",
- "permId" : permId
- };
-}
-
-var createWellPosition = function(wellRow, wellColumn){
- return {
- "@type" : "WellPosition",
- "wellRow" : wellRow,
- "wellColumn" : wellColumn
- };
-}
-
-var createImageSize = function(width, height){
- return {
- "@type" : "ImageSize",
- "width" : width,
- "height" : height
- };
-}
-
-var createLoadImageConfiguration = function(width, height){
- return {
- "@type" : "LoadImageConfiguration",
- "desiredImageSize" : createImageSize(width, height)
- };
-}
-
-var createImageRepresentationFormat = function(dataSetCode, width, height){
- return {
- "@type" : "ImageRepresentationFormat",
- "dataSetCode" : dataSetCode,
- "width" : width,
- "height" : height
- };
-}
-
-var createSizeCriterion = function(width, height, type){
- return {
- "@type" : "SizeCriterion",
- "width" : width,
- "height" : height,
- "type" : type
- };
-}
-
-var createFeatureVectorWellReference = function(featureVectorDatasetReference, wellRow, wellColumn){
- // little hack to avoid creating FeatureVectorDatasetWellReference
- // object by hand as it is pretty complex to do
- var wellReference = jQuery.extend(true, {}, featureVectorDatasetReference);
- wellReference["@type"] = "FeatureVectorDatasetWellReference";
- wellReference["wellPosition"] = createWellPosition(wellRow, wellColumn);
- return wellReference;
-}
-
-var listImageDatasetReferencesForPlateIdentifier = function(facade, plateIdentifier, action){
- var plateIdentifiers = [ createPlateIdentifier(plateIdentifier) ];
-
- facade.listImageDatasets(plateIdentifiers, function(response){
- action(response.result);
- });
-}
-
-var listImageReferencesForPlateIdentifierAndWellPositionAndChannel = function(facade, plateIdentifier, wellRow, wellColumn, channel, action){
- listImageDatasetReferencesForPlateIdentifier(facade, plateIdentifier, function(dataSetReferences){
- var dataSetIdentifier = dataSetReferences[0];
- var wellPositions = [ createWellPosition(wellRow, wellColumn) ];
-
- facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel(dataSetIdentifier, wellPositions, channel, function(response){
- action(response.result);
- });
- });
-}
-
-var listImageReferencesAndFormatForPlateIdentifierAndWellPositionAndChannel = function(facade, plateIdentifier, wellRow, wellColumn, channel, action){
- listImageDatasetReferencesForPlateIdentifier(facade, plateIdentifier, function(dataSetReferences){
- var dataSetIdentifier = dataSetReferences[0];
- var wellPositions = [ createWellPosition(wellRow, wellColumn) ];
-
- facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel(dataSetIdentifier, wellPositions, channel, function(imageReferencesResponse){
- var imageDataSets = [ dataSetIdentifier ];
-
- facade.listAvailableImageRepresentationFormats(imageDataSets, function(formatResponse){
- action({
- imageReferences : imageReferencesResponse.result,
- format : formatResponse.result[0].imageRepresentationFormats[0]
- });
- });
- });
- });
-}
-
-var listFeatureVectorPhysicalDatasets = function(facade, plateIdentifiers, action){
- facade.listFeatureVectorDatasets(plateIdentifiers, function(response){
- var featureDatasets = response.result;
-
- var physicalFeatureDatasets = featureDatasets.filter(function(featureDataset){
- return featureDataset.dataSetType == "HCS_ANALYSIS_WELL_FEATURES";
- });
-
- action(physicalFeatureDatasets);
- });
-}
-
-var listFeatureVectorContainerDatasets = function(facade, plateIdentifiers, action){
- facade.listFeatureVectorDatasets(plateIdentifiers, function(response){
- var featureDatasets = response.result;
-
- var containerFeatureDatasets = featureDatasets.filter(function(featureDataset){
- return featureDataset.dataSetType == "HCS_ANALYSIS_CONTAINER_WELL_FEATURES";
- });
-
- action(containerFeatureDatasets);
- });
-}
-
-test("listPlates()", function(){
- createFacadeAndLogin(function(facade){
-
- facade.listPlates(function(response){
- assertObjectsCount(response.result, 4);
- facade.close();
- });
- });
-});
-
-
-
-test("listPlatesForExperiment()", function(){
- createFacadeAndLogin(function(facade){
- var experimentIdentifier = createExperimentIdentfier("/PLATONIC/SCREENING-EXAMPLES/EXP-1");
-
- facade.listPlatesForExperiment(experimentIdentifier, function(response){
- assertObjectsCount(response.result, 2);
- assertObjectsWithValues(response.result, "plateCode", ["PLATE-1","PLATE-2"]);
- facade.close();
- });
- });
-});
-
-test("getPlateMetadataList()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1"), createPlateIdentifier("/PLATONIC/PLATE-2") ];
-
- facade.getPlateMetadataList(plateIdentifiers, function(response){
- assertObjectsCount(response.result, 2);
- assertObjectsWithValues(response.result, "plateCode", ["PLATE-1","PLATE-2"]);
- facade.close();
- });
- });
-});
-
-test("listAllExperiments()", function(){
- createFacadeAndLogin(function(facade){
- facade.listAllExperiments(function(response){
- assertObjectsCount(response.result, 5);
- assertObjectsWithValues(response.result, "experimentCode", ["EXP-1","EXP-2","TEST-EXPERIMENT","TEST-EXPERIMENT-2","TEST-EXPERIMENT-3"]);
- facade.close();
- });
- });
-});
-
-test("listExperimentsVisibleToUser()", function(){
- createFacadeAndLogin(function(facade){
- var userId = "test_space_admin";
-
- facade.listExperimentsVisibleToUser(userId, function(response){
- assertObjectsCount(response.result, 3);
- assertObjectsWithValues(response.result, "experimentCode", ["TEST-EXPERIMENT","TEST-EXPERIMENT-2","TEST-EXPERIMENT-3"]);
- facade.close();
- });
- });
-});
-
-test("listFeatureVectorDatasets()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- facade.listFeatureVectorDatasets(plateIdentifiers, function(response){
- assertObjectsCount(response.result, 2);
- assertObjectsWithValues(response.result, "datasetCode", ["20130412153659945-390", "20130412153659994-391"]);
- facade.close();
- });
- });
-});
-
-test("listImageDatasets()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- facade.listImageDatasets(plateIdentifiers, function(response){
- assertObjectsCount(response.result, 1);
- assertObjectsWithValues(response.result, "datasetCode", [ "20130412143121081-200"]);
- facade.close();
- });
- });
-});
-
-test("listRawImageDatasets()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- facade.listRawImageDatasets(plateIdentifiers, function(response){
- assertObjectsCount(response.result, 1);
- assertObjectsWithValues(response.result, "datasetCode", [ "20130412143121081-200"]);
- facade.close();
- });
- });
-});
-
-test("listSegmentationImageDatasets()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- facade.listSegmentationImageDatasets(plateIdentifiers, function(response){
- assertObjectsCount(response.result, 1);
- assertObjectsWithValues(response.result, "datasetCode", [ "20130412153119864-385" ]);
- facade.close();
- });
- });
-});
-
-test("getDatasetIdentifiers()", function(){
- createFacadeAndLogin(function(facade){
- var datasetCodes = ["20130412143119901-199", "20130412143121081-200"];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- assertObjectsCount(response.result, 2);
- assertObjectsWithValues(response.result, "datasetCode", datasetCodes);
- facade.close();
- });
- });
-});
-
-test("listPlateWellsForExperimentAndMaterial()", function(){
- createFacadeAndLogin(function(facade){
- var experimentIdentifer = createExperimentIdentfier("/PLATONIC/SCREENING-EXAMPLES/EXP-1");
- var materialIdentifier = createMaterialIdentifier("/GENE/G1");
- var findDatasets = true;
-
- facade.listPlateWellsForExperimentAndMaterial(experimentIdentifer, materialIdentifier, findDatasets, function(response){
- assertObjectsCount(response.result, 98);
- assertObjectsWithValuesFunction(response.result, "plateCode", function(result){
- return result.experimentPlateIdentifier.plateCode;
- }, ["PLATE-1", "PLATE-2"]);
- facade.close();
- });
- });
-});
-
-test("listPlateWellsForMaterial()", function(){
- createFacadeAndLogin(function(facade){
- var materialIdentifier = createMaterialIdentifier("/GENE/G1");
- var findDatasets = true;
-
- facade.listPlateWellsForMaterial(materialIdentifier, findDatasets, function(response){
- assertObjectsCount(response.result, 196);
- assertObjectsWithValuesFunction(response.result, "plateCode", function(result){
- return result.experimentPlateIdentifier.plateCode;
- }, ["PLATE-1", "PLATE-1A", "PLATE-2"]);
- facade.close();
- });
- });
-});
-
-test("listPlateWells()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifier = createPlateIdentifier("/PLATONIC/PLATE-1");
-
- facade.listPlateWells(plateIdentifier, function(response){
- assertObjectsCount(response.result, 79);
- facade.close();
- });
- });
-});
-
-test("getWellSample()", function(){
- createFacadeAndLogin(function(facade){
- var wellIdentifier = createWellIdentifier("20130412140151999-35");
-
- facade.getWellSample(wellIdentifier, function(response){
- equal(response.result.code, "PLATE-1:B2", "Well code is correct");
- facade.close();
- });
- });
-});
-
-test("getPlateSample()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifier = createPlateIdentifier("/PLATONIC/PLATE-1");
-
- facade.getPlateSample(plateIdentifier, function(response){
- equal(response.result.code, "PLATE-1", "Plate code is correct");
- facade.close();
- });
- });
-});
-
-test("listPlateMaterialMapping()", function(){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
- var materialTypeIdentifierOrNull = createMaterialTypeIdentifier("GENE");
-
- facade.listPlateMaterialMapping(plateIdentifiers, materialTypeIdentifierOrNull, function(response){
- assertObjectsCount(response.result, 1);
- assertObjectsWithValuesFunction(response.result, "plateCode", function(result){
- return result.plateIdentifier.plateCode;
- }, ["PLATE-1"]);
- facade.close();
- });
- });
-});
-
-test("getExperimentImageMetadata()", function(){
- createFacadeAndLogin(function(facade){
- var experimentIdentifier = createExperimentIdentfier("/PLATONIC/SCREENING-EXAMPLES/EXP-1");
-
- facade.getExperimentImageMetadata(experimentIdentifier, function(response){
- equal(response.result.identifier.experimentCode, "EXP-1", "Experiment code is correct");
- equal(response.result.plateGeometry.width, 12, "Plate width is correct");
- equal(response.result.plateGeometry.height, 8, "Plate height is correct");
- facade.close();
- });
- });
-});
-
-var testListAvailableFeatureCodes = function(listFeatureVectorDatasetsFunction){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- listFeatureVectorDatasetsFunction(facade, plateIdentifiers, function(featureDatasets){
- facade.listAvailableFeatureCodes(featureDatasets, function(response){
- assertObjectsCount(response.result, 4);
- assertArrays(response.result, ["ROW_NUMBER", "COLUMN_NUMBER", "TPU", "STATE"], "Feature codes are correct");
- facade.close();
- });
- });
- });
-}
-
-test("listAvailableFeatureCodes() for physical data set", function(){
- testListAvailableFeatureCodes(listFeatureVectorPhysicalDatasets);
-});
-
-test("listAvailableFeatureCodes() for container data set", function(){
- testListAvailableFeatureCodes(listFeatureVectorContainerDatasets);
-});
-
-var testListAvailableFeatures = function(listFeatureVectorDatasetsFunction){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- listFeatureVectorDatasetsFunction(facade, plateIdentifiers, function(featureDatasets){
- facade.listAvailableFeatures(featureDatasets, function(response){
- assertObjectsCount(response.result, 4);
- assertObjectsWithValues(response.result, 'code', ["ROW_NUMBER", "COLUMN_NUMBER", "TPU", "STATE"]);
- facade.close();
- });
- });
- });
-}
-
-test("listAvailableFeatures() for physical data set", function(){
- testListAvailableFeatures(listFeatureVectorPhysicalDatasets);
-});
-
-test("listAvailableFeatures() for container data set", function(){
- testListAvailableFeatures(listFeatureVectorContainerDatasets);
-});
-
-var testLoadFeaturesForDatasetWellReferences = function(listFeatureVectorDatasetsFunction){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- listFeatureVectorDatasetsFunction(facade, plateIdentifiers, function(featureDatasets){
- var datasetWellReferences = [ createFeatureVectorWellReference(featureDatasets[0], 1, 2) ];
- var featureCodes = ["ROW_NUMBER", "STATE"];
-
- facade.loadFeaturesForDatasetWellReferences(datasetWellReferences, featureCodes, function(response){
- assertObjectsCount(response.result, 1);
- assertArrays(response.result[0].featureCodes, featureCodes, 'Feature codes are correct');
- equal(response.result[0].wellPosition.wellRow, 1, 'Well row is correct');
- equal(response.result[0].wellPosition.wellColumn, 2, 'Well column is correct');
- facade.close();
- });
- });
- });
-}
-
-test("loadFeaturesForDatasetWellReferences() for physical data set", function(){
- testLoadFeaturesForDatasetWellReferences(listFeatureVectorPhysicalDatasets);
-});
-
-test("loadFeaturesForDatasetWellReferences() for container data set", function(){
- testLoadFeaturesForDatasetWellReferences(listFeatureVectorContainerDatasets);
-});
-
-var testLoadFeatures = function(listFeatureVectorDatasetsFunction){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- listFeatureVectorDatasetsFunction(facade, plateIdentifiers, function(featureDatasets){
- var featureCodes = ["ROW_NUMBER", "STATE"];
-
- facade.loadFeatures(featureDatasets, featureCodes, function(response){
- assertObjectsCount(response.result, 1);
- assertArrays(response.result[0].featureCodes, featureCodes, 'Feature codes are correct');
- equal(response.result[0].featureVectors.length, 96, 'Feature vectors count is correct');
- facade.close();
- });
- });
- });
-}
-
-test("loadFeatures() for physical data set", function(){
- testLoadFeatures(listFeatureVectorPhysicalDatasets);
-});
-
-test("loadFeatures() for container data set", function(){
- testLoadFeatures(listFeatureVectorContainerDatasets);
-});
-
-
-test("loadImagesBase64ForImageReferencesAndImageConversion()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){
- var convertToPng = false;
-
- facade.loadImagesBase64ForImageReferencesAndImageConversion(imageReferences, convertToPng, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("loadThumbnailImagesBase64ForImageReferences()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){
- facade.loadThumbnailImagesBase64ForImageReferences(imageReferences, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("loadImagesBase64ForImageReferencesAndImageSize()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){
- var imageSize = createImageSize(100, 100);
-
- facade.loadImagesBase64ForImageReferencesAndImageSize(imageReferences, imageSize, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("loadImagesBase64ForImageReferences()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){
- facade.loadImagesBase64ForImageReferences(imageReferences, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("loadImagesBase64ForImageReferencesAndImageConfiguration()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){
- var configuration = createLoadImageConfiguration(100, 100);
-
- facade.loadImagesBase64ForImageReferencesAndImageConfiguration(imageReferences, configuration, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("loadImagesBase64ForImageReferencesAndImageRepresentationFormat()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesAndFormatForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(results){
- facade.loadImagesBase64ForImageReferencesAndImageRepresentationFormat(results.imageReferences, results.format, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("loadImagesBase64ForImageReferencesAndImageRepresentationFormatCriteria()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(imageReferences){
- var criteria = [ createSizeCriterion(100, 100, 'SMALLEST_COVERING_BOUNDING_BOX') ];
-
- facade.loadImagesBase64ForImageReferencesAndImageRepresentationFormatCriteria(imageReferences, criteria, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-test("listImageMetadata()", function(){
- createFacadeAndLogin(function(facade){
- listImageDatasetReferencesForPlateIdentifier(facade, "/PLATONIC/PLATE-1", function(imageDataSets){
- facade.listImageMetadata(imageDataSets, function(response){
- assertObjectsCount(response.result, 1);
- assertObjectsWithValuesFunction(response.result, "datasetCode", function(result){
- return result.imageDataset.datasetCode;
- }, ["20130412143121081-200"]);
- facade.close();
- });
- });
- });
-});
-
-var testListAvailableImageRepresentationFormats = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var dataSetIdentifiers = response.result;
-
- facade.listAvailableImageRepresentationFormats(dataSetIdentifiers, function(response){
- assertObjectsCount(response.result, 1);
- assertObjectsWithValuesFunction(response.result, "datasetCode", function(result){
- return result.dataset.datasetCode;
- }, [datasetCode]);
- facade.close();
- });
- });
- });
-}
-
-test("listAvailableImageRepresentationFormats() for physical data set", function(){
- testListAvailableImageRepresentationFormats("20130412143119901-199");
-});
-
-test("listAvailableImageRepresentationFormats() for container data set", function(){
- testListAvailableImageRepresentationFormats("20130412143121081-200");
-});
-
-test("loadPhysicalThumbnailsBase64ForImageReferencesAndImageRepresentationFormat()", function(){
- createFacadeAndLogin(function(facade){
- listImageReferencesAndFormatForPlateIdentifierAndWellPositionAndChannel(facade, "/PLATONIC/PLATE-1", 1, 1, "DAPI", function(results){
- facade.loadPhysicalThumbnailsBase64ForImageReferencesAndImageRepresentationFormat(results.imageReferences, results.format, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-});
-
-testLoadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var dataSetIdentifier = response.result[0];
- var wellPositions = [ createWellPosition(1, 1) ];
- var channel = "DAPI";
- var thumbnailSizeOrNull = createImageSize(100, 100);
-
- facade.loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize(dataSetIdentifier, wellPositions , channel, thumbnailSizeOrNull, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize() for physical data set", function(){
- testLoadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize("20130412143119901-199");
-});
-*/
-
-test("loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize() for container data set", function(){
- testLoadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize("20130412143121081-200");
-});
-
-var testLoadImagesBase64ForDataSetIdentifierAndChannelAndImageSize = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var datasetIdentifier = response.result[0];
- var channel = "RGB";
- var thumbnailSizeOrNull = createImageSize(100, 100);
-
- facade.loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize(datasetIdentifier, channel, thumbnailSizeOrNull, function(response){
- assertObjectsCount(response.result, 1);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize() for physical data set", function(){
- testLoadImagesBase64ForDataSetIdentifierAndChannelAndImageSize("20130417094936021-428");
-});
-*/
-
-test("loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize() for container data set", function(){
- testLoadImagesBase64ForDataSetIdentifierAndChannelAndImageSize("20130417094937144-429");
-});
-
-var testLoadThumbnailImagesBase64ForDataSetIdentifierAndChannels = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var datasetIdentifier = response.result[0];
- var channels = ["RGB"];
-
- facade.loadThumbnailImagesBase64ForDataSetIdentifierAndChannels(datasetIdentifier, channels, function(response){
- assertObjectsCount(response.result, 1);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("loadThumbnailImagesBase64ForDataSetIdentifierAndChannels() for physical data set", function(){
- testLoadThumbnailImagesBase64ForDataSetIdentifierAndChannels("20130417094934693-427");
-});
-*/
-
-test("loadThumbnailImagesBase64ForDataSetIdentifierAndChannels() for container data set", function(){
- testLoadThumbnailImagesBase64ForDataSetIdentifierAndChannels("20130417094937144-429");
-});
-
-var testListPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var dataSetIdentifier = response.result[0];
- var wellPositions = [ createWellPosition(1, 1) ];
- var channel = "DAPI";
-
- facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel(dataSetIdentifier, wellPositions , channel, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel() for physical data set", function(){
- testListPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel("20130412143119901-199");
-});
-*/
-
-test("listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel() for container data set", function(){
- testListPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel("20130412143121081-200");
-});
-
-
-var testListPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var dataSetIdentifier = response.result[0];
- var wellPositions = [ createWellPosition(1, 1) ];
- var channels = ["DAPI"];
-
- facade.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels(dataSetIdentifier, wellPositions , channels, function(response){
- assertObjectsCount(response.result, 9);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels() for physical data set", function(){
- testListPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels("20130412143119901-199");
-});
-*/
-
-test("listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels() for container data set", function(){
- testListPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels("20130412143121081-200");
-});
-
-var testListImageReferencesForDataSetIdentifierAndChannel = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var datasetIdentifier = response.result[0];
- var channel = "RGB";
-
- facade.listImageReferencesForDataSetIdentifierAndChannel(datasetIdentifier, channel, function(response){
- assertObjectsCount(response.result, 1);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("listImageReferencesForDataSetIdentifierAndChannel() for physical data set", function(){
- testListImageReferencesForDataSetIdentifierAndChannel("20130417094936021-428");
-});
-*/
-
-test("listImageReferencesForDataSetIdentifierAndChannel() for container data set", function(){
- testListImageReferencesForDataSetIdentifierAndChannel("20130417094937144-429");
-});
-
-var testListImageReferencesForDataSetIdentifierAndChannels = function(datasetCode){
- createFacadeAndLogin(function(facade){
- var datasetCodes = [datasetCode];
-
- facade.getDatasetIdentifiers(datasetCodes, function(response){
- var datasetIdentifier = response.result[0];
- var channels = ["RGB"];
-
- facade.listImageReferencesForDataSetIdentifierAndChannels(datasetIdentifier, channels, function(response){
- assertObjectsCount(response.result, 1);
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("listImageReferencesForDataSetIdentifierAndChannels() for physical data set", function(){
- testListImageReferencesForDataSetIdentifierAndChannels("20130417094936021-428");
-});
-*/
-
-test("listImageReferencesForDataSetIdentifierAndChannels() for container data set", function(){
- testListImageReferencesForDataSetIdentifierAndChannels("20130417094937144-429");
-});
-
-var testListAvailableFeatureLists = function(listFeatureVectorDatasetsFunction){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- listFeatureVectorDatasetsFunction(facade, plateIdentifiers, function(featureDatasets){
- facade.listAvailableFeatureLists(featureDatasets[0], function(response){
- assertObjectsCount(response.result, 2);
- assertArrays(response.result, ["BARCODE_AND_STATE_FEATURE_LIST","NUMBER_FEATURE_LIST"], "Feature lists are correct");
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("listAvailableFeatureLists() for physical data set", function(){
- testListAvailableFeatureLists(listFeatureVectorPhysicalDatasets);
-});
-*/
-
-test("listAvailableFeatureLists() for container data set", function(){
- testListAvailableFeatureLists(listFeatureVectorContainerDatasets);
-});
-
-var testGetFeatureList = function(listFeatureVectorDatasetsFunction){
- createFacadeAndLogin(function(facade){
- var plateIdentifiers = [ createPlateIdentifier("/PLATONIC/PLATE-1") ];
-
- listFeatureVectorDatasetsFunction(facade, plateIdentifiers, function(featureDatasets){
- var featureDataset = featureDatasets[0];
-
- facade.getFeatureList(featureDataset, "BARCODE_AND_STATE_FEATURE_LIST", function(response){
- assertObjectsCount(response.result, 2);
- assertArrays(response.result, ["barcode","STATE"], "Feature list items are correct");
- facade.close();
- });
- });
- });
-}
-
-/* FAILS
-test("getFeatureList() for physical data set", function(){
- testGetFeatureList(listFeatureVectorPhysicalDatasets);
-});
-*/
-
-test("getFeatureList() for container data set", function(){
- testGetFeatureList(listFeatureVectorContainerDatasets);
-});
diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties
deleted file mode 100644
index c8e67174428..00000000000
--- a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-screening-test/plugin.properties
+++ /dev/null
@@ -1,3 +0,0 @@
-webapp-folder = html
-openbisui-contexts = modules-menu
-label = openbis-screening-test.js
--
GitLab