diff --git a/screening/sourceTest/core-plugins/SimpleImageDropboxTest/1/dss/drop-boxes/SimpleImageDropboxTest-drop-box/hcs-dropbox.py b/screening/sourceTest/core-plugins/SimpleImageDropboxTest/1/dss/drop-boxes/SimpleImageDropboxTest-drop-box/hcs-dropbox.py index e553d0d57d566b8dce47591667ff5b57ab2a4de0..6797bef2af7ab0d6148e7aabf88ca1a4a43ecf0b 100644 --- a/screening/sourceTest/core-plugins/SimpleImageDropboxTest/1/dss/drop-boxes/SimpleImageDropboxTest-drop-box/hcs-dropbox.py +++ b/screening/sourceTest/core-plugins/SimpleImageDropboxTest/1/dss/drop-boxes/SimpleImageDropboxTest-drop-box/hcs-dropbox.py @@ -68,6 +68,13 @@ class MyImageDataSetConfig(SimpleImageDataConfig): image_tokens.channelCode = channelCode return image_tokens + def getChannelColor(self, channelCode): + dict = { "DAPI" : ChannelColor.GREEN, "CY3" : ChannelColor.BLUE } + if channelCode in dict: + return dict[channelCode] + else: + return None + def getTileGeometry(self, imageTokens, maxTileNumber): return Geometry.createFromRowColDimensions(maxTileNumber / 3, 3)