From c30b8c6f2011ced2cbff7c35775f137082700227 Mon Sep 17 00:00:00 2001
From: juanf <juanf>
Date: Wed, 10 Dec 2014 11:53:53 +0000
Subject: [PATCH] SSDM-1285 : ELN - Peter Lab Migration
SVN: 33009
---
.../petermigration/1/as/definitions.py | 566 +++++++++---------
.../1/as/initialize-master-data.py | 5 +-
2 files changed, 286 insertions(+), 285 deletions(-)
diff --git a/plasmid/source/core-plugins/petermigration/1/as/definitions.py b/plasmid/source/core-plugins/petermigration/1/as/definitions.py
index 207db3fa251..bd6364c06b9 100644
--- a/plasmid/source/core-plugins/petermigration/1/as/definitions.py
+++ b/plasmid/source/core-plugins/petermigration/1/as/definitions.py
@@ -23,333 +23,333 @@ commentsScriptName = "COMMENTS";
numberOfStorageGroups = 15
stogageGroupPropertyCodes = ["STORAGE_NAME", "STORAGE_ROW", "STORAGE_COLUMN", "STORAGE_BOX_NAME", "STORAGE_USER", "STORAGE_BOX_POSITION"] #This is duplicated below, needs cleanup
storageGroupDefinition = [
- ["STORAGE_NAME_0", "Physical Storage 0", "location", DataType.CONTROLLEDVOCABULARY, "FREEZER", "Storage Name 0", None, None],
- ["STORAGE_ROW_0", "Physical Storage 0", "Storage Row", DataType.INTEGER, None, "Storage Row 0", None, None],
- ["STORAGE_COLUMN_0", "Physical Storage 0", "Storage Column", DataType.INTEGER, None, "Storage Column 0", None, None],
- ["STORAGE_BOX_NAME_0", "Physical Storage 0", "box label", DataType.VARCHAR, None, "Storage Box Name 0", None, None],
- ["STORAGE_USER_0", "Physical Storage 0", "frozen by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "Storage User Id 0", None, None],
- ["STORAGE_BOX_POSITION_0", "Physical Storage 0", "position", DataType.VARCHAR, None, "Storage Box Position 0", None, None]
+ ["STORAGE_NAME_0", "Physical Storage 0", "location", DataType.CONTROLLEDVOCABULARY, "FREEZER", "Storage Name 0", None, None, False],
+ ["STORAGE_ROW_0", "Physical Storage 0", "Storage Row", DataType.INTEGER, None, "Storage Row 0", None, None, False],
+ ["STORAGE_COLUMN_0", "Physical Storage 0", "Storage Column", DataType.INTEGER, None, "Storage Column 0", None, None, False],
+ ["STORAGE_BOX_NAME_0", "Physical Storage 0", "box label", DataType.VARCHAR, None, "Storage Box Name 0", None, None, False],
+ ["STORAGE_USER_0", "Physical Storage 0", "frozen by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "Storage User Id 0", None, None, False],
+ ["STORAGE_BOX_POSITION_0", "Physical Storage 0", "position", DataType.VARCHAR, None, "Storage Box Position 0", None, None, False]
];
#
# Experiment Types
#
experimentDefinition = [
- ["NAME", "General", "Name", DataType.VARCHAR, None, "Name", None, None],
- ["EXPERIMENTAL_GOALS", "General", "Experimental goals", DataType.MULTILINE_VARCHAR, None, "Goal of the experiment", None, None],
- ["GRANT", "General", "Grant", DataType.VARCHAR, None, "grant name", None, None],
- ["START_DATE", "General", "Start Date", DataType.TIMESTAMP, None, "Start Date", None, None],
- ["END_DATE", "General", "End Date", DataType.TIMESTAMP, None, "End Date", None, None],
- ["EXPERIMENTAL_RESULTS", "General", "Experimental results", DataType.MULTILINE_VARCHAR, None, "Brief summary of the results obtained", None, None],
- ["XMLCOMMENTS", "Comments","Comments List", DataType.XML, None, "Several comments can be added by different users", commentsScriptName, None]
+ ["NAME", "General", "Name", DataType.VARCHAR, None, "Name", None, None, False],
+ ["EXPERIMENTAL_GOALS", "General", "Experimental goals", DataType.MULTILINE_VARCHAR, None, "Goal of the experiment", None, None, False],
+ ["GRANT", "General", "Grant", DataType.VARCHAR, None, "grant name", None, None, False],
+ ["START_DATE", "General", "Start Date", DataType.TIMESTAMP, None, "Start Date", None, None, False],
+ ["END_DATE", "General", "End Date", DataType.TIMESTAMP, None, "End Date", None, None, False],
+ ["EXPERIMENTAL_RESULTS", "General", "Experimental results", DataType.MULTILINE_VARCHAR, None, "Brief summary of the results obtained", None, None, False],
+ ["XMLCOMMENTS", "Comments","Comments List", DataType.XML, None, "Several comments can be added by different users", commentsScriptName, None, False]
];
#
# Sample Types
#
antibodyDefinition = [
- ["NAME", "General", "antibody ID", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_ID_NR", "General", "antibody_id_nr", DataType.VARCHAR, None, "", None, None],
- ["ANTIGEN", "General", "antigen", DataType.VARCHAR, None, "", None, None],
- ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None],
- ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_FACS_BLOCK", "General", "block facs", DataType.CONTROLLEDVOCABULARY, "BLOCK", "", None, None],
- ["ANTIBODY_IF_BLOCK", "General", "block IFF", DataType.CONTROLLEDVOCABULARY, "BLOCK", "", None, None],
- ["ANTIBODY_WB_BLOCK", "General", "block western", DataType.CONTROLLEDVOCABULARY, "BLOCK", "", None, None],
- ["BOX", "General", "box", DataType.VARCHAR, None, "", None, None],
- ["CATALOGUE_NUMBER", "General", "catalog id #", DataType.VARCHAR, None, "", None, None],
- ["CLASS", "General", "class", DataType.CONTROLLEDVOCABULARY, "CLASS", "", None, None],
- ["CLONE", "General", "clone", DataType.VARCHAR, None, "", None, None],
- ["COMPANY", "General", "company", DataType.CONTROLLEDVOCABULARY, "COMPANY", "", None, None],
- ["ANTIBODY_FACS_CONC", "General", "conc facs", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_FACS", "", None, None],
- ["ANTIBODY_IF_CONC", "General", "conc IFF", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_FACS", "", None, None],
- ["ANTIBODY_IP_CONC", "General", "conc ip", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_IP", "", None, None],
- ["ANTIBODY_WB_CONC", "General", "conc western", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_WESTERN", "", None, None],
- ["ANTIBODY_CONCENTRATION", "General", "concentration", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_CROSSREACTIVITY", "General", "crossreactivity", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_FACS_FIX", "General", "fix facs", DataType.CONTROLLEDVOCABULARY, "FIX", "", None, None],
- ["ANTIBODY_IF_FIX", "General", "fix IFF", DataType.CONTROLLEDVOCABULARY, "FIX", "", None, None],
- ["ANTIBODY_WB_FIX", "General", "fix western", DataType.CONTROLLEDVOCABULARY, "FIX", "", None, None],
- ["COMMENTS", "Comments", "info", DataType.VARCHAR, None, "", None, None],
- ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["LABEL", "General", "label", DataType.CONTROLLEDVOCABULARY, "LABEL", "", None, None],
- ["LOTNUMBER", "General", "lotnumber", DataType.VARCHAR, None, "", None, None],
- ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["MONO_POLYCLONAL", "General", "mono/polyclonal", DataType.CONTROLLEDVOCABULARY, "MONO-POLYCLONAL", "", None, None],
- ["ANTIBODY_FACS_NOTES", "General", "notes FACS", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_IF_NOTES", "General", "notes IFF", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_IP_NOTES", "General", "notes IP", DataType.VARCHAR, None, "", None, None],
- ["ANTIBODY_WB_NOTES", "General", "notes western", DataType.VARCHAR, None, "", None, None],
- ["RACK", "General", "rack", DataType.VARCHAR, None, "", None, None],
- ["PUBLISHED_IN", "Reference", "reference", DataType.VARCHAR, None, "", None, None],
- ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None],
- ["ANTIGEN_SIZE", "General", "size", DataType.VARCHAR, None, "", None, None],
- ["SOURCE", "General", "source", DataType.CONTROLLEDVOCABULARY, "SOURCE", "", None, None],
- ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None],
- ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None],
- ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None]
+ ["NAME", "General", "antibody ID", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_ID_NR", "General", "antibody_id_nr", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIGEN", "General", "antigen", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_FACS_BLOCK", "General", "block facs", DataType.CONTROLLEDVOCABULARY, "BLOCK", "", None, None, False],
+ ["ANTIBODY_IF_BLOCK", "General", "block IFF", DataType.CONTROLLEDVOCABULARY, "BLOCK", "", None, None, False],
+ ["ANTIBODY_WB_BLOCK", "General", "block western", DataType.CONTROLLEDVOCABULARY, "BLOCK", "", None, None, False],
+ ["BOX", "General", "box", DataType.VARCHAR, None, "", None, None, False],
+ ["CATALOGUE_NUMBER", "General", "catalog id #", DataType.VARCHAR, None, "", None, None, False],
+ ["CLASS", "General", "class", DataType.CONTROLLEDVOCABULARY, "CLASS", "", None, None, False],
+ ["CLONE", "General", "clone", DataType.VARCHAR, None, "", None, None, False],
+ ["COMPANY", "General", "company", DataType.CONTROLLEDVOCABULARY, "COMPANY", "", None, None, False],
+ ["ANTIBODY_FACS_CONC", "General", "conc facs", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_FACS", "", None, None, False],
+ ["ANTIBODY_IF_CONC", "General", "conc IFF", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_FACS", "", None, None, False],
+ ["ANTIBODY_IP_CONC", "General", "conc ip", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_IP", "", None, None, False],
+ ["ANTIBODY_WB_CONC", "General", "conc western", DataType.CONTROLLEDVOCABULARY, "CONCENTRATION_WESTERN", "", None, None, False],
+ ["ANTIBODY_CONCENTRATION", "General", "concentration", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_CROSSREACTIVITY", "General", "crossreactivity", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_FACS_FIX", "General", "fix facs", DataType.CONTROLLEDVOCABULARY, "FIX", "", None, None, False],
+ ["ANTIBODY_IF_FIX", "General", "fix IFF", DataType.CONTROLLEDVOCABULARY, "FIX", "", None, None, False],
+ ["ANTIBODY_WB_FIX", "General", "fix western", DataType.CONTROLLEDVOCABULARY, "FIX", "", None, None, False],
+ ["COMMENTS", "Comments", "info", DataType.VARCHAR, None, "", None, None, False],
+ ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["LABEL", "General", "label", DataType.CONTROLLEDVOCABULARY, "LABEL", "", None, None, False],
+ ["LOTNUMBER", "General", "lotnumber", DataType.VARCHAR, None, "", None, None, False],
+ ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["MONO_POLYCLONAL", "General", "mono/polyclonal", DataType.CONTROLLEDVOCABULARY, "MONO-POLYCLONAL", "", None, None, False],
+ ["ANTIBODY_FACS_NOTES", "General", "notes FACS", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_IF_NOTES", "General", "notes IFF", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_IP_NOTES", "General", "notes IP", DataType.VARCHAR, None, "", None, None, False],
+ ["ANTIBODY_WB_NOTES", "General", "notes western", DataType.VARCHAR, None, "", None, None, False],
+ ["RACK", "General", "rack", DataType.VARCHAR, None, "", None, None, False],
+ ["PUBLISHED_IN", "Reference", "reference", DataType.VARCHAR, None, "", None, None, False],
+ ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None, False],
+ ["ANTIGEN_SIZE", "General", "size", DataType.VARCHAR, None, "", None, None, False],
+ ["SOURCE", "General", "source", DataType.CONTROLLEDVOCABULARY, "SOURCE", "", None, None, False],
+ ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False]
];
cellDefinition = [
- ["CO2", "General", "%CO2", DataType.CONTROLLEDVOCABULARY, "CO2", "", None, None],
- ["ATCC_NUM", "General", "ATCC No.", DataType.VARCHAR, None, "", None, None],
- ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None],
- ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None],
- ["CELL_ID_NR", "General", "cell_id_nr", DataType.VARCHAR, None, "", None, None],
- ["CELL_ID_NR_COPY", "General", "cell_id_nr Copy", DataType.VARCHAR, None, "", None, None],
- ["NAME", "General", "cell ID", DataType.VARCHAR, None, "", None, None],
- ["CELL_ID_COPY", "General", "cell ID Copy", DataType.VARCHAR, None, "", None, None],
- ["CLONE", "General", "clone #", DataType.INTEGER, None, "", None, None],
- ["COMPARE_FIELD", "General", "compare field", DataType.VARCHAR, None, "", None, None],
- ["CONC1", "General", "conc.1", DataType.REAL, None, "", None, None],
- ["CONC_UNIT1", "General", "concentration unit 1", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CONC2", "General", "conc.2", DataType.REAL, None, "", None, None],
- ["CONC_UNIT2", "General", "concentration unit 2", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CONC3", "General", "conc.3", DataType.REAL, None, "", None, None],
- ["CONC_UNIT3", "General", "concentration unit 3", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CONC4", "General", "conc.4", DataType.REAL, None, "", None, None],
- ["CONC_UNIT4", "General", "concentration unit 4", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None],
- ["DATE", "General", "date", DataType.TIMESTAMP, None, "", None, None],
- ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None],
- ["GROWTH_TEMPERATURE", "General", "growth temperature", DataType.CONTROLLEDVOCABULARY, "GROWTH_TEMPERATURE", "", None, None],
- ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["COMMENTS", "Comments", "info", DataType.VARCHAR, None, "", None, None],
- ["LINE_NAME", "General", "line name", DataType.VARCHAR, None, "", None, None],
- ["MEDIUM", "General", "medium", DataType.CONTROLLEDVOCABULARY, "MEDIUM", "", None, None],
- ["MEDIUM_SPECIALS", "General", "medium specials", DataType.VARCHAR, None, "", None, None],
- ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None],
- ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["MYCOPLASM_TESTED", "General", "mycoplasm_tested", DataType.BOOLEAN, None, "", None, None],
- ["OBTAINED_FROM", "General", "obtained from", DataType.CONTROLLEDVOCABULARY, "CELL_OBTAINED_FROM", "", None, None],
- ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None],
- ["PARENTAL_CELL", "General", "parental cell", DataType.VARCHAR, None, "", None, None],
- ["PASSAGE", "General", "passage", DataType.VARCHAR, None, "", None, None],
- ["PERS_CELL_NUMBER", "General", "PersCellNumber", DataType.VARCHAR, None, "", None, None],
- ["PLASMID_ID1", "General", "plasmid ID 1", DataType.VARCHAR, None, "", None, None],
- ["PLASMID_ID2", "General", "plasmid ID 2", DataType.VARCHAR, None, "", None, None],
- ["PUBLISHED_IN", "Reference", "reference", DataType.VARCHAR, None, "", None, None],
- ["SELECTION_PLASMID1", "General", "sel.1", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None],
- ["SELECTION_PLASMID2", "General", "sel.2", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None],
- ["SELECTION_PLASMID3", "General", "sel.3", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None],
- ["SELECTION_PLASMID4", "General", "sel.4", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None],
- ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None],
- ["SPECIES", "General", "species", DataType.CONTROLLEDVOCABULARY, "CELL_SPECIES", "", None, None],
- ["VIRUS_ID1", "General", "virus ID 1", DataType.VARCHAR, None, "", None, None],
- ["VIRUS_ID2", "General", "virus ID 2", DataType.VARCHAR, None, "", None, None]
+ ["CO2", "General", "%CO2", DataType.CONTROLLEDVOCABULARY, "CO2", "", None, None, False],
+ ["ATCC_NUM", "General", "ATCC No.", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False],
+ ["CELL_ID_NR", "General", "cell_id_nr", DataType.VARCHAR, None, "", None, None, False],
+ ["CELL_ID_NR_COPY", "General", "cell_id_nr Copy", DataType.VARCHAR, None, "", None, None, False],
+ ["NAME", "General", "cell ID", DataType.VARCHAR, None, "", None, None, False],
+ ["CELL_ID_COPY", "General", "cell ID Copy", DataType.VARCHAR, None, "", None, None, False],
+ ["CLONE", "General", "clone #", DataType.INTEGER, None, "", None, None, False],
+ ["COMPARE_FIELD", "General", "compare field", DataType.VARCHAR, None, "", None, None, False],
+ ["CONC1", "General", "conc.1", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT1", "General", "concentration unit 1", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CONC2", "General", "conc.2", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT2", "General", "concentration unit 2", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CONC3", "General", "conc.3", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT3", "General", "concentration unit 3", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CONC4", "General", "conc.4", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT4", "General", "concentration unit 4", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["DATE", "General", "date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False],
+ ["GROWTH_TEMPERATURE", "General", "growth temperature", DataType.CONTROLLEDVOCABULARY, "GROWTH_TEMPERATURE", "", None, None, False],
+ ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["COMMENTS", "Comments", "info", DataType.VARCHAR, None, "", None, None, False],
+ ["LINE_NAME", "General", "line name", DataType.VARCHAR, None, "", None, None, False],
+ ["MEDIUM", "General", "medium", DataType.CONTROLLEDVOCABULARY, "MEDIUM", "", None, None, False],
+ ["MEDIUM_SPECIALS", "General", "medium specials", DataType.VARCHAR, None, "", None, None, False],
+ ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["MYCOPLASM_TESTED", "General", "mycoplasm_tested", DataType.BOOLEAN, None, "", None, None, False],
+ ["OBTAINED_FROM", "General", "obtained from", DataType.CONTROLLEDVOCABULARY, "CELL_OBTAINED_FROM", "", None, None, False],
+ ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None, False],
+ ["PARENTAL_CELL", "General", "parental cell", DataType.VARCHAR, None, "", None, None, False],
+ ["PASSAGE", "General", "passage", DataType.VARCHAR, None, "", None, None, False],
+ ["PERS_CELL_NUMBER", "General", "PersCellNumber", DataType.VARCHAR, None, "", None, None, False],
+ ["PLASMID_ID1", "General", "plasmid ID 1", DataType.VARCHAR, None, "", None, None, False],
+ ["PLASMID_ID2", "General", "plasmid ID 2", DataType.VARCHAR, None, "", None, None, False],
+ ["PUBLISHED_IN", "Reference", "reference", DataType.VARCHAR, None, "", None, None, False],
+ ["SELECTION_PLASMID1", "General", "sel.1", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None, False],
+ ["SELECTION_PLASMID2", "General", "sel.2", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None, False],
+ ["SELECTION_PLASMID3", "General", "sel.3", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None, False],
+ ["SELECTION_PLASMID4", "General", "sel.4", DataType.CONTROLLEDVOCABULARY, "SELECTION", "", None, None, False],
+ ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None, False],
+ ["SPECIES", "General", "species", DataType.CONTROLLEDVOCABULARY, "CELL_SPECIES", "", None, None, False],
+ ["VIRUS_ID1", "General", "virus ID 1", DataType.VARCHAR, None, "", None, None, False],
+ ["VIRUS_ID2", "General", "virus ID 2", DataType.VARCHAR, None, "", None, None, False]
];
strainDefinition = [
- ["CO2", "General", "%CO2", DataType.CONTROLLEDVOCABULARY, "CO2", "", None, None],
- ["BACKGROUND", "General", "background", DataType.CONTROLLEDVOCABULARY, "STRAIN_BACKGROUND", "", None, None],
- ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None],
- ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None],
- ["CIR", "General", "cir", DataType.CONTROLLEDVOCABULARY, "CIR", "", None, None],
- ["CONC_INDUCER1", "General", "conc. inducer 1", DataType.VARCHAR, None, "", None, None],
- ["CONC_INDUCER2", "General", "conc. inducer 2", DataType.VARCHAR, None, "", None, None],
- ["CONC_INDUCER3", "General", "conc. inducer 3", DataType.VARCHAR, None, "", None, None],
- ["CONC1", "General", "conc.1", DataType.REAL, None, "", None, None],
- ["CONC_UNIT1", "General", "concentration unit 1", DataType.VARCHAR, None, "", None, None],
- ["CONC2", "General", "conc.2", DataType.REAL, None, "", None, None],
- ["CONC_UNIT2", "General", "concentration unit 2", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CONC3", "General", "conc.3", DataType.REAL, None, "", None, None],
- ["CONC_UNIT3", "General", "concentration unit 3", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None],
- ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None],
- ["DERIVATION", "General", "derivation", DataType.CONTROLLEDVOCABULARY, "DERIVATION", "", None, None],
- ["EXPRESSED_PROTEIN1", "General", "expressed protein 1", DataType.VARCHAR, None, "", None, None],
- ["EXPRESSED_PROTEIN2", "General", "expressed protein 2", DataType.VARCHAR, None, "", None, None],
- ["EXPRESSED_PROTEIN3", "General", "expressed protein 3", DataType.VARCHAR, None, "", None, None],
- ["FREE_PLASMID", "General", "freeplasmid", DataType.VARCHAR, None, "", None, None],
- ["FREEZEDATE", "General", "freezedate", DataType.VARCHAR, None, "", None, None],
- ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None],
- ["GAL", "General", "gal", DataType.CONTROLLEDVOCABULARY, "GAL", "", None, None],
- ["GENE_EXPRESSION1", "General", "gene expression 1", DataType.VARCHAR, None, "", None, None],
- ["GENE_EXPRESSION2", "General", "gene expression 2", DataType.VARCHAR, None, "", None, None],
- ["GROWTH_TEMPERATURE", "General", "growth temperature", DataType.CONTROLLEDVOCABULARY, "GROWTH_TEMPERATURE", "", None, None],
- ["INDUCER1", "General", "inducer 1", DataType.VARCHAR, None, "", None, None],
- ["INDUCER2", "General", "inducer 2", DataType.VARCHAR, None, "", None, None],
- ["INDUCER3", "General", "inducer 3", DataType.VARCHAR, None, "", None, None],
- ["COMMENTS", "General", "info", DataType.VARCHAR, None, "", None, None],
- ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None],
- ["MAT", "General", "mat", DataType.CONTROLLEDVOCABULARY, "MAT", "", None, None],
- ["MEDIUM", "General", "medium", DataType.CONTROLLEDVOCABULARY, "MEDIUM", "", None, None],
- ["MEDIUM_SPECIALS", "General", "medium specials", DataType.VARCHAR, None, "", None, None],
- ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None],
- ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["NUMBER", "General", "number", DataType.VARCHAR, None, "", None, None],
- ["OBTAINED_FROM", "General", "obtained from", DataType.VARCHAR, None, "", None, None],
- ["ORF", "General", "orf", DataType.VARCHAR, None, "", None, None],
- ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None],
- ["PARENTAL_CELL", "General", "parental cell", DataType.VARCHAR, None, "", None, None],
- ["PASSAGE", "General", "passage", DataType.VARCHAR, None, "", None, None],
- ["PERSYEASTNUMBER", "General", "persyeastnumber", DataType.INTEGER, None, "", None, None],
- ["PETERYEASTNUMBER", "General", "peteryeastnumber", DataType.INTEGER, None, "", None, None],
- ["PLASMID_ID1", "General", "plasmid ID 1", DataType.VARCHAR, None, "", None, None],
- ["PLASMID_ID2", "General", "plasmid ID 2", DataType.VARCHAR, None, "", None, None],
- ["PLASMID_ID3", "General", "plasmid ID 3", DataType.VARCHAR, None, "", None, None],
- ["PROMOTER1", "General", "promoter 1", DataType.VARCHAR, None, "", None, None],
- ["PROMOTER2", "General", "promoter 2", DataType.VARCHAR, None, "", None, None],
- ["PROMOTER3", "General", "promoter 3", DataType.VARCHAR, None, "", None, None],
- ["PUBLISHED_IN", "General", "reference", DataType.VARCHAR, None, "", None, None],
- ["SELECTION1", "General", "sel.1", DataType.VARCHAR, None, "", None, None],
- ["SELECTION2", "General", "sel.2", DataType.VARCHAR, None, "", None, None],
- ["SELECTION3", "General", "sel.3", DataType.VARCHAR, None, "", None, None],
- ["SELECTION", "General", "selection", DataType.CONTROLLEDVOCABULARY, "SELECTION_YEAST", "", None, None],
- ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None],
- ["STRAIN_SOURCE", "General", "source", DataType.CONTROLLEDVOCABULARY, "STRAIN_SOURCE", "", None, None],
- ["SPECIES", "General", "species", DataType.VARCHAR, None, "", None, None],
- ["STRAIN_ID_NR", "General", "strain_id_nr", DataType.VARCHAR, None, "", None, None],
- ["NAME", "General", "strain ID", DataType.VARCHAR, None, "", None, None],
- ["STRAIN_NAME", "General", "strain name", DataType.VARCHAR, None, "", None, None]
+ ["CO2", "General", "%CO2", DataType.CONTROLLEDVOCABULARY, "CO2", "", None, None, False],
+ ["BACKGROUND", "General", "background", DataType.CONTROLLEDVOCABULARY, "STRAIN_BACKGROUND", "", None, None, False],
+ ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False],
+ ["CIR", "General", "cir", DataType.CONTROLLEDVOCABULARY, "CIR", "", None, None, False],
+ ["CONC_INDUCER1", "General", "conc. inducer 1", DataType.VARCHAR, None, "", None, None, False],
+ ["CONC_INDUCER2", "General", "conc. inducer 2", DataType.VARCHAR, None, "", None, None, False],
+ ["CONC_INDUCER3", "General", "conc. inducer 3", DataType.VARCHAR, None, "", None, None, False],
+ ["CONC1", "General", "conc.1", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT1", "General", "concentration unit 1", DataType.VARCHAR, None, "", None, None, False],
+ ["CONC2", "General", "conc.2", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT2", "General", "concentration unit 2", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CONC3", "General", "conc.3", DataType.REAL, None, "", None, None, False],
+ ["CONC_UNIT3", "General", "concentration unit 3", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None, False],
+ ["DERIVATION", "General", "derivation", DataType.CONTROLLEDVOCABULARY, "DERIVATION", "", None, None, False],
+ ["EXPRESSED_PROTEIN1", "General", "expressed protein 1", DataType.VARCHAR, None, "", None, None, False],
+ ["EXPRESSED_PROTEIN2", "General", "expressed protein 2", DataType.VARCHAR, None, "", None, None, False],
+ ["EXPRESSED_PROTEIN3", "General", "expressed protein 3", DataType.VARCHAR, None, "", None, None, False],
+ ["FREE_PLASMID", "General", "freeplasmid", DataType.VARCHAR, None, "", None, None, False],
+ ["FREEZEDATE", "General", "freezedate", DataType.VARCHAR, None, "", None, None, False],
+ ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False],
+ ["GAL", "General", "gal", DataType.CONTROLLEDVOCABULARY, "GAL", "", None, None, False],
+ ["GENE_EXPRESSION1", "General", "gene expression 1", DataType.VARCHAR, None, "", None, None, False],
+ ["GENE_EXPRESSION2", "General", "gene expression 2", DataType.VARCHAR, None, "", None, None, False],
+ ["GROWTH_TEMPERATURE", "General", "growth temperature", DataType.CONTROLLEDVOCABULARY, "GROWTH_TEMPERATURE", "", None, None, False],
+ ["INDUCER1", "General", "inducer 1", DataType.VARCHAR, None, "", None, None, False],
+ ["INDUCER2", "General", "inducer 2", DataType.VARCHAR, None, "", None, None, False],
+ ["INDUCER3", "General", "inducer 3", DataType.VARCHAR, None, "", None, None, False],
+ ["COMMENTS", "General", "info", DataType.VARCHAR, None, "", None, None, False],
+ ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None, False],
+ ["MAT", "General", "mat", DataType.CONTROLLEDVOCABULARY, "MAT", "", None, None, False],
+ ["MEDIUM", "General", "medium", DataType.CONTROLLEDVOCABULARY, "MEDIUM", "", None, None, False],
+ ["MEDIUM_SPECIALS", "General", "medium specials", DataType.VARCHAR, None, "", None, None, False],
+ ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["NUMBER", "General", "number", DataType.VARCHAR, None, "", None, None, False],
+ ["OBTAINED_FROM", "General", "obtained from", DataType.VARCHAR, None, "", None, None, False],
+ ["ORF", "General", "orf", DataType.VARCHAR, None, "", None, None, False],
+ ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None, False],
+ ["PARENTAL_CELL", "General", "parental cell", DataType.VARCHAR, None, "", None, None, False],
+ ["PASSAGE", "General", "passage", DataType.VARCHAR, None, "", None, None, False],
+ ["PERSYEASTNUMBER", "General", "persyeastnumber", DataType.INTEGER, None, "", None, None, False],
+ ["PETERYEASTNUMBER", "General", "peteryeastnumber", DataType.INTEGER, None, "", None, None, False],
+ ["PLASMID_ID1", "General", "plasmid ID 1", DataType.VARCHAR, None, "", None, None, False],
+ ["PLASMID_ID2", "General", "plasmid ID 2", DataType.VARCHAR, None, "", None, None, False],
+ ["PLASMID_ID3", "General", "plasmid ID 3", DataType.VARCHAR, None, "", None, None, False],
+ ["PROMOTER1", "General", "promoter 1", DataType.VARCHAR, None, "", None, None, False],
+ ["PROMOTER2", "General", "promoter 2", DataType.VARCHAR, None, "", None, None, False],
+ ["PROMOTER3", "General", "promoter 3", DataType.VARCHAR, None, "", None, None, False],
+ ["PUBLISHED_IN", "General", "reference", DataType.VARCHAR, None, "", None, None, False],
+ ["SELECTION1", "General", "sel.1", DataType.VARCHAR, None, "", None, None, False],
+ ["SELECTION2", "General", "sel.2", DataType.VARCHAR, None, "", None, None, False],
+ ["SELECTION3", "General", "sel.3", DataType.VARCHAR, None, "", None, None, False],
+ ["SELECTION", "General", "selection", DataType.CONTROLLEDVOCABULARY, "SELECTION_YEAST", "", None, None, False],
+ ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None, False],
+ ["STRAIN_SOURCE", "General", "source", DataType.CONTROLLEDVOCABULARY, "STRAIN_SOURCE", "", None, None, False],
+ ["SPECIES", "General", "species", DataType.VARCHAR, None, "", None, None, False],
+ ["STRAIN_ID_NR", "General", "strain_id_nr", DataType.VARCHAR, None, "", None, None, False],
+ ["NAME", "General", "strain ID", DataType.VARCHAR, None, "", None, None, False],
+ ["STRAIN_NAME", "General", "strain name", DataType.VARCHAR, None, "", None, None, False]
];
oligoDefinition = [
#["ADENOSINE", "General", "adenosine", DataType.XML, None, "", adenineScriptName],
- ["AMOUNT", "General", "amount", DataType.REAL, None, "", None, None],
- ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None],
- ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None],
- ["COMPANY", "General", "company", DataType.CONTROLLEDVOCABULARY, "OLIGO_COMPANY", "", None, None],
- ["CONCENTRATION", "General", "concentration", DataType.REAL, None, "", None, None],
- ["CONCENTRATION_UNIT", "General", "concentration unit", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None],
+ ["AMOUNT", "General", "amount", DataType.REAL, None, "", None, None, False],
+ ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False],
+ ["COMPANY", "General", "company", DataType.CONTROLLEDVOCABULARY, "OLIGO_COMPANY", "", None, None, False],
+ ["CONCENTRATION", "General", "concentration", DataType.REAL, None, "", None, None, False],
+ ["CONCENTRATION_UNIT", "General", "concentration unit", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False],
# ["CYTOSINE", "General", "cytosine", DataType.XML, None, "", cytosineScriptName],
- ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None],
- ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None],
+ ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None, False],
+ ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False],
#["GC", "General", "gc", DataType.XML, None, "", gcScriptName],
- ["GENE_LOCUS", "General", "gene locus", DataType.VARCHAR, None, "", None, None],
- ["GRADE", "General", "grade", DataType.CONTROLLEDVOCABULARY, "OLIGO_GRADE", "", None, None],
+ ["GENE_LOCUS", "General", "gene locus", DataType.VARCHAR, None, "", None, None, False],
+ ["GRADE", "General", "grade", DataType.CONTROLLEDVOCABULARY, "OLIGO_GRADE", "", None, None, False],
#["GUANOSINE", "General", "guanosine", DataType.XML, None, "", guanosineScriptName],
- ["COMMENTS", "General", "Info", DataType.VARCHAR, None, "", None, None],
- ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
+ ["COMMENTS", "General", "Info", DataType.VARCHAR, None, "", None, None, False],
+ ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
#["LENGTH", "General", "length", DataType.XML, None, "", lengthScriptName],
- ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None],
- ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
+ ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
#["O_NUCLEOTIDE", "General", "O nucleotide", DataType.XML, None, "", nucelotideScriptName],
- ["OD", "General", "od", DataType.INTEGER, None, "", None, None],
- ["NAME", "General", "oligo ID", DataType.INTEGER, None, "", None, None],
- ["OLIGO_ID_NR", "General", "oligo_id_nr", DataType.VARCHAR, None, "", None, None],
- ["ORDER_DATE", "General", "order date", DataType.VARCHAR, None, "", None, None],
- ["ORGANISM", "General", "organism", DataType.CONTROLLEDVOCABULARY, "OLIGO_ORGANISM", "", None, None],
- ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None],
- ["PRIMER_PARTNER", "General", "primer partner", DataType.VARCHAR, None, "", None, None],
- ["PRIMER_POSITION", "General", "primer position", DataType.CONTROLLEDVOCABULARY, "PRIMER_POSITION", "", None, None],
- ["PUBLISHED_IN", "General", "PublishedIn", DataType.VARCHAR, None, "", None, None],
- ["RESTRICTION_SITE", "General", "restriction site", DataType.CONTROLLEDVOCABULARY, "RESTRICTION", "", None, None],
- ["SEQUENCE", "General", "sequence", DataType.VARCHAR, None, "", None, None],
- ["SERIAL_NUMBER", "General", "serial number", DataType.VARCHAR, None, "", None, None],
+ ["OD", "General", "od", DataType.INTEGER, None, "", None, None, False],
+ ["NAME", "General", "oligo ID", DataType.INTEGER, None, "", None, None, False],
+ ["OLIGO_ID_NR", "General", "oligo_id_nr", DataType.VARCHAR, None, "", None, None, False],
+ ["ORDER_DATE", "General", "order date", DataType.VARCHAR, None, "", None, None, False],
+ ["ORGANISM", "General", "organism", DataType.CONTROLLEDVOCABULARY, "OLIGO_ORGANISM", "", None, None, False],
+ ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None, False],
+ ["PRIMER_PARTNER", "General", "primer partner", DataType.VARCHAR, None, "", None, None, False],
+ ["PRIMER_POSITION", "General", "primer position", DataType.CONTROLLEDVOCABULARY, "PRIMER_POSITION", "", None, None, False],
+ ["PUBLISHED_IN", "General", "PublishedIn", DataType.VARCHAR, None, "", None, None, False],
+ ["RESTRICTION_SITE", "General", "restriction site", DataType.CONTROLLEDVOCABULARY, "RESTRICTION", "", None, None, False],
+ ["SEQUENCE", "General", "sequence", DataType.VARCHAR, None, "", None, None, False],
+ ["SERIAL_NUMBER", "General", "serial number", DataType.VARCHAR, None, "", None, None, False],
#["THYMIDINE", "General", "thymidine", DataType.XML, None, "", thymidineScriptName],
#["TM", "General", "tm", DataType.XML, None, "", tmScriptName],
- ["USAGE", "General", "usage", DataType.CONTROLLEDVOCABULARY, "OLIGO_USAGE", "", None, None]
+ ["USAGE", "General", "usage", DataType.CONTROLLEDVOCABULARY, "OLIGO_USAGE", "", None, None, False]
];
plasmidDefinition = [
- ["BACKBONE", "General", "backbone", DataType.CONTROLLEDVOCABULARY, "BACKBONE", "", None, None],
- ["BACKUP_STORAGE", "General", "backup storage", DataType.VARCHAR, None, "", None, None],
- ["BACTERIAL_HOST", "General", "bacterial host", DataType.CONTROLLEDVOCABULARY, "BACTERIAL_HOST", "", None, None],
- ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None],
- ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None],
- ["BIOSAFETY_LEVEL", "General", "biosafety level", DataType.CONTROLLEDVOCABULARY, "BIOSAFETY_LEVEL", "", None, None],
- ["BOXNR", "General", "boxNr", DataType.VARCHAR, None, "", None, None],
- ["CONCENTRATION_UNIT", "General", "concentration unit", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None],
- ["CONSTRUCTION_METHOD", "General", "construction method", DataType.VARCHAR, None, "", None, None],
- ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None],
- ["CTERMTAG", "General", "Ctermtag", DataType.VARCHAR, None, "", None, None],
- ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None],
- ["DATE_OF_CONSTRUCTION", "General", "date of construction", DataType.TIMESTAMP, None, "", None, None],
- ["DERIVATIVE_OF", "General", "Derivative of", DataType.VARCHAR, None, "", None, None],
- ["ECOLI_STRAIN", "General", "E.coli strain", DataType.VARCHAR, None, "", None, None],
- ["EXCISE_INSERT", "General", "excise insert", DataType.VARCHAR, None, "", None, None],
- ["EXCISE_INSERT2", "General", "excise insert 2", DataType.VARCHAR, None, "", None, None],
- ["FREEZEDATE", "General", "freezedate", DataType.VARCHAR, None, "", None, None],
- ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None],
- ["FUNCTIONAL_ELEMENTS_INSERT", "General", "functional elements insert", DataType.VARCHAR, None, "", None, None],
- ["HYPERCARD_FILE", "General", "hypercard file", DataType.VARCHAR, None, "", None, None],
- ["INFO", "General", "info", DataType.VARCHAR, None, "", None, None],
- ["INSERT", "General", "insert", DataType.VARCHAR, None, "", None, None],
- ["INSERTION_SITE", "General", "insertion site", DataType.VARCHAR, None, "", None, None],
- ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["LINEARIZE", "General", "linearize", DataType.VARCHAR, None, "", None, None],
- ["MARKER", "General", "Marker", DataType.VARCHAR, None, "", None, None],
- ["MODIFICATION_DATE", "General", "modification date", DataType.VARCHAR, None, "", None, None],
- ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["NAME_OF_PARENTAL_CLONE", "General", "name of parental clone", DataType.VARCHAR, None, "", None, None],
- ["NAME_OF_VECTOR", "General", "name of vector", DataType.VARCHAR, None, "", None, None],
- ["NTERMTAG", "General", "Ntermtag", DataType.VARCHAR, None, "", None, None],
- ["NUCLEOTIDE_SEQUENCE", "General", "nucleotide sequence", DataType.VARCHAR, None, "", None, None],
- ["OLIGOS_USED", "General", "oligos used", DataType.VARCHAR, None, "", None, None],
- ["ORGANISM", "General", "organism", DataType.VARCHAR, None, "", None, None],
- ["ORIGIN_OF_REPLICATION", "General", "origin of replication", DataType.VARCHAR, None, "", None, None],
- ["OTHER_MARKER", "General", "other marker", DataType.VARCHAR, None, "", None, None],
- ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None],
- ["PERSPLASMIDNUM", "General", "persPlasmidnum", DataType.INTEGER, None, "", None, None],
- ["PETERPLASMIDNUM", "General", "PeterPlasmidNum", DataType.INTEGER, None, "", None, None],
- ["PLASMID_ID", "General", "plasmid ID", DataType.VARCHAR, None, "", None, None],
- ["PLASMID_ID_NR", "General", "plasmid_id_nr", DataType.VARCHAR, None, "", None, None],
- ["PLASMIDNAME", "General", "plasmidname", DataType.VARCHAR, None, "", None, None],
- ["PRIMERS", "General", "primers", DataType.VARCHAR, None, "", None, None],
- ["PROMOTER", "General", "promoter", DataType.CONTROLLEDVOCABULARY, "PROMOTER", "", None, None],
- ["PUBLISHED_IN", "General", "published in", DataType.VARCHAR, None, "", None, None],
- ["SELECTION_IN_BACTERIA", "General", "selection in bacteria", DataType.CONTROLLEDVOCABULARY, "SELECTION_IN_BACTERIA", "", None, None],
- ["SELECTION_IN_EUKARYOTES", "General", "selection in eukaryotes", DataType.CONTROLLEDVOCABULARY, "SELECTION_IN_EUKARYOTES", "", None, None],
- ["SEQUENCE_FILE_NAME", "General", "sequence file name", DataType.VARCHAR, None, "", None, None],
- ["SEQUENCING_DATE", "General", "sequencing date", DataType.TIMESTAMP, None, "", None, None],
- ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None],
- ["SHELF", "General", "shelf", DataType.VARCHAR, None, "", None, None],
- ["SIZE_INSERT", "General", "size insert", DataType.REAL, None, "", None, None],
- ["SIZE_OF_INSERT", "General", "size of insert", DataType.VARCHAR, None, "", None, None],
- ["SIZE_VECTOR", "General", "size vector", DataType.REAL, None, "", None, None],
- ["SOURCE", "General", "source", DataType.VARCHAR, None, "", None, None],
- ["SPECIES", "General", "species", DataType.CONTROLLEDVOCABULARY, "PLASMID_ORGANISM", "", None, None],
- #["TUBES", "General", "TUBES", DataType.VARCHAR, None, "", None, None],
- ["URL", "General", "url", DataType.VARCHAR, None, "", None, None]
+ ["BACKBONE", "General", "backbone", DataType.CONTROLLEDVOCABULARY, "BACKBONE", "", None, None, False],
+ ["BACKUP_STORAGE", "General", "backup storage", DataType.VARCHAR, None, "", None, None, False],
+ ["BACTERIAL_HOST", "General", "bacterial host", DataType.CONTROLLEDVOCABULARY, "BACTERIAL_HOST", "", None, None, False],
+ ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False],
+ ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False],
+ ["BIOSAFETY_LEVEL", "General", "biosafety level", DataType.CONTROLLEDVOCABULARY, "BIOSAFETY_LEVEL", "", None, None, False],
+ ["BOXNR", "General", "boxNr", DataType.VARCHAR, None, "", None, None, False],
+ ["CONCENTRATION_UNIT", "General", "concentration unit", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
+ ["CONSTRUCTION_METHOD", "General", "construction method", DataType.VARCHAR, None, "", None, None, False],
+ ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["CTERMTAG", "General", "Ctermtag", DataType.VARCHAR, None, "", None, None, False],
+ ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None, False],
+ ["DATE_OF_CONSTRUCTION", "General", "date of construction", DataType.TIMESTAMP, None, "", None, None, False],
+ ["DERIVATIVE_OF", "General", "Derivative of", DataType.VARCHAR, None, "", None, None, False],
+ ["ECOLI_STRAIN", "General", "E.coli strain", DataType.VARCHAR, None, "", None, None, False],
+ ["EXCISE_INSERT", "General", "excise insert", DataType.VARCHAR, None, "", None, None, False],
+ ["EXCISE_INSERT2", "General", "excise insert 2", DataType.VARCHAR, None, "", None, None, False],
+ ["FREEZEDATE", "General", "freezedate", DataType.VARCHAR, None, "", None, None, False],
+ ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False],
+ ["FUNCTIONAL_ELEMENTS_INSERT", "General", "functional elements insert", DataType.VARCHAR, None, "", None, None, False],
+ ["HYPERCARD_FILE", "General", "hypercard file", DataType.VARCHAR, None, "", None, None, False],
+ ["INFO", "General", "info", DataType.VARCHAR, None, "", None, None, False],
+ ["INSERT", "General", "insert", DataType.VARCHAR, None, "", None, None, False],
+ ["INSERTION_SITE", "General", "insertion site", DataType.VARCHAR, None, "", None, None, False],
+ ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["LINEARIZE", "General", "linearize", DataType.VARCHAR, None, "", None, None, False],
+ ["MARKER", "General", "Marker", DataType.VARCHAR, None, "", None, None, False],
+ ["MODIFICATION_DATE", "General", "modification date", DataType.VARCHAR, None, "", None, None, False],
+ ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["NAME_OF_PARENTAL_CLONE", "General", "name of parental clone", DataType.VARCHAR, None, "", None, None, False],
+ ["NAME_OF_VECTOR", "General", "name of vector", DataType.VARCHAR, None, "", None, None, False],
+ ["NTERMTAG", "General", "Ntermtag", DataType.VARCHAR, None, "", None, None, False],
+ ["NUCLEOTIDE_SEQUENCE", "General", "nucleotide sequence", DataType.VARCHAR, None, "", None, None, False],
+ ["OLIGOS_USED", "General", "oligos used", DataType.VARCHAR, None, "", None, None, False],
+ ["ORGANISM", "General", "organism", DataType.VARCHAR, None, "", None, None, False],
+ ["ORIGIN_OF_REPLICATION", "General", "origin of replication", DataType.VARCHAR, None, "", None, None, False],
+ ["OTHER_MARKER", "General", "other marker", DataType.VARCHAR, None, "", None, None, False],
+ ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None, False],
+ ["PERSPLASMIDNUM", "General", "persPlasmidnum", DataType.INTEGER, None, "", None, None, False],
+ ["PETERPLASMIDNUM", "General", "PeterPlasmidNum", DataType.INTEGER, None, "", None, None, False],
+ ["PLASMID_ID", "General", "plasmid ID", DataType.VARCHAR, None, "", None, None, False],
+ ["PLASMID_ID_NR", "General", "plasmid_id_nr", DataType.VARCHAR, None, "", None, None, False],
+ ["PLASMIDNAME", "General", "plasmidname", DataType.VARCHAR, None, "", None, None, False],
+ ["PRIMERS", "General", "primers", DataType.VARCHAR, None, "", None, None, False],
+ ["PROMOTER", "General", "promoter", DataType.CONTROLLEDVOCABULARY, "PROMOTER", "", None, None, False],
+ ["PUBLISHED_IN", "General", "published in", DataType.VARCHAR, None, "", None, None, False],
+ ["SELECTION_IN_BACTERIA", "General", "selection in bacteria", DataType.CONTROLLEDVOCABULARY, "SELECTION_IN_BACTERIA", "", None, None, False],
+ ["SELECTION_IN_EUKARYOTES", "General", "selection in eukaryotes", DataType.CONTROLLEDVOCABULARY, "SELECTION_IN_EUKARYOTES", "", None, None, False],
+ ["SEQUENCE_FILE_NAME", "General", "sequence file name", DataType.VARCHAR, None, "", None, None, False],
+ ["SEQUENCING_DATE", "General", "sequencing date", DataType.TIMESTAMP, None, "", None, None, False],
+ ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None, False],
+ ["SHELF", "General", "shelf", DataType.VARCHAR, None, "", None, None, False],
+ ["SIZE_INSERT", "General", "size insert", DataType.REAL, None, "", None, None, False],
+ ["SIZE_OF_INSERT", "General", "size of insert", DataType.VARCHAR, None, "", None, None, False],
+ ["SIZE_VECTOR", "General", "size vector", DataType.REAL, None, "", None, None, False],
+ ["SOURCE", "General", "source", DataType.VARCHAR, None, "", None, None, False],
+ ["SPECIES", "General", "species", DataType.CONTROLLEDVOCABULARY, "PLASMID_ORGANISM", "", None, None, False],
+ #["TUBES", "General", "TUBES", DataType.VARCHAR, None, "", None, None, False],
+ ["URL", "General", "url", DataType.VARCHAR, None, "", None, None, False]
];
chemicalDefinition = [
- ["ARTICLE", "General", "Article", DataType.VARCHAR, None, "", None, None],
- ["COMPANY", "General", "Company", DataType.CONTROLLEDVOCABULARY, "COMPANY", "", None, None],
- ["ARTICLE_NUM", "General", "Article Number", DataType.VARCHAR, None, "", None, None],
- ["LOCATION", "General", "Location", DataType.VARCHAR, None, "", None, None],
- ["RECORD_NUMBER", "General", "RecordNumber", DataType.VARCHAR, None, "", None, None]
+ ["ARTICLE", "General", "Article", DataType.VARCHAR, None, "", None, None, False],
+ ["COMPANY", "General", "Company", DataType.CONTROLLEDVOCABULARY, "COMPANY", "", None, None, False],
+ ["ARTICLE_NUM", "General", "Article Number", DataType.VARCHAR, None, "", None, None, False],
+ ["LOCATION", "General", "Location", DataType.VARCHAR, None, "", None, None, False],
+ ["RECORD_NUMBER", "General", "RecordNumber", DataType.VARCHAR, None, "", None, None, False]
];
siRNADefinition = [
- ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None],
- ["GENE_LOCUS", "General", "gene locus", DataType.VARCHAR, None, "", None, None],
- ["EXON_OR_THREE_PRIME", "General", "exon or three prime", DataType.VARCHAR, None, "", None, None],
- ["EXON", "General", "exon #", DataType.VARCHAR, None, "", None, None],
- ["3_PRIME_POSITION", "General", "3' position", DataType.VARCHAR, None, "", None, None],
- ["SPECIES", "General", "species", DataType.VARCHAR, None, "", None, None],
- ["SEQUENCE", "General", "SEQUENCE", DataType.VARCHAR, None, "", None, None],
- ["COMPANY", "General", "Company", DataType.VARCHAR, None, "", None, None],
- ["STOCK_CONCENTRATION", "General", "Stock concentration", DataType.VARCHAR, None, "", None, None],
- ["WORKING_CONCENTRATION", "General", "Working concentration", DataType.VARCHAR, None, "", None, None],
- ["EFFICIENCY", "General", "Efficiency", DataType.VARCHAR, None, "", None, None],
- ["EFFICIENCY_QPCR", "General", "Efficiency_qPCR", DataType.VARCHAR, None, "", None, None],
- ["EFFICIENCY_WESTERN", "General", "Efficiency_Western", DataType.VARCHAR, None, "", None, None],
- ["EFFICIENCY_OTHER", "General", "Efficiency_other", DataType.VARCHAR, None, "", None, None],
- ["OFF_TARGET_EFFECTS", "General", "Off target effects", DataType.VARCHAR, None, "", None, None],
- ["INFO", "General", "Info", DataType.VARCHAR, None, "", None, None],
- ["SPECIFIC_SPLICE_VARIANT", "General", "Specific splice variant", DataType.VARCHAR, None, "", None, None],
- ["TRANSFECTION_AGENT", "General", "Transfection agent", DataType.VARCHAR, None, "", None, None],
- ["PUBLISHED", "General", "Published", DataType.VARCHAR, None, "", None, None],
- ["LIBRARY", "General", "Library", DataType.VARCHAR, None, "", None, None],
- ["CHARACTERIZED_BY_COMPANY", "General", "Characterized by company", DataType.VARCHAR, None, "", None, None],
- ["NUMBERINPOOL", "General", "NumberINpool", DataType.VARCHAR, None, "", None, None],
- ["TEST", "General", "Test", DataType.VARCHAR, None, "", None, None],
- ["CHEMICAL_MODIFICATION", "General", "Chemical modification", DataType.VARCHAR, None, "", None, None],
- ["OLIGO_NAME", "General", "Oligo name", DataType.VARCHAR, None, "", None, None],
- ["SIRNA_OLIGONUMBER", "General", "siRNA_OligoNumber", DataType.VARCHAR, None, "", None, None],
- ["FREEZER_LOCATION", "General", "Freezer Location", DataType.VARCHAR, None, "", None, None],
- ["DRAWER", "General", "Drawer", DataType.VARCHAR, None, "", None, None]
+ ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
+ ["GENE_LOCUS", "General", "gene locus", DataType.VARCHAR, None, "", None, None, False],
+ ["EXON_OR_THREE_PRIME", "General", "exon or three prime", DataType.VARCHAR, None, "", None, None, False],
+ ["EXON", "General", "exon #", DataType.VARCHAR, None, "", None, None, False],
+ ["3_PRIME_POSITION", "General", "3' position", DataType.VARCHAR, None, "", None, None, False],
+ ["SPECIES", "General", "species", DataType.VARCHAR, None, "", None, None, False],
+ ["SEQUENCE", "General", "SEQUENCE", DataType.VARCHAR, None, "", None, None, False],
+ ["COMPANY", "General", "Company", DataType.VARCHAR, None, "", None, None, False],
+ ["STOCK_CONCENTRATION", "General", "Stock concentration", DataType.VARCHAR, None, "", None, None, False],
+ ["WORKING_CONCENTRATION", "General", "Working concentration", DataType.VARCHAR, None, "", None, None, False],
+ ["EFFICIENCY", "General", "Efficiency", DataType.VARCHAR, None, "", None, None, False],
+ ["EFFICIENCY_QPCR", "General", "Efficiency_qPCR", DataType.VARCHAR, None, "", None, None, False],
+ ["EFFICIENCY_WESTERN", "General", "Efficiency_Western", DataType.VARCHAR, None, "", None, None, False],
+ ["EFFICIENCY_OTHER", "General", "Efficiency_other", DataType.VARCHAR, None, "", None, None, False],
+ ["OFF_TARGET_EFFECTS", "General", "Off target effects", DataType.VARCHAR, None, "", None, None, False],
+ ["INFO", "General", "Info", DataType.VARCHAR, None, "", None, None, False],
+ ["SPECIFIC_SPLICE_VARIANT", "General", "Specific splice variant", DataType.VARCHAR, None, "", None, None, False],
+ ["TRANSFECTION_AGENT", "General", "Transfection agent", DataType.VARCHAR, None, "", None, None, False],
+ ["PUBLISHED", "General", "Published", DataType.VARCHAR, None, "", None, None, False],
+ ["LIBRARY", "General", "Library", DataType.VARCHAR, None, "", None, None, False],
+ ["CHARACTERIZED_BY_COMPANY", "General", "Characterized by company", DataType.VARCHAR, None, "", None, None, False],
+ ["NUMBERINPOOL", "General", "NumberINpool", DataType.VARCHAR, None, "", None, None, False],
+ ["TEST", "General", "Test", DataType.VARCHAR, None, "", None, None, False],
+ ["CHEMICAL_MODIFICATION", "General", "Chemical modification", DataType.VARCHAR, None, "", None, None, False],
+ ["OLIGO_NAME", "General", "Oligo name", DataType.VARCHAR, None, "", None, None, False],
+ ["SIRNA_OLIGONUMBER", "General", "siRNA_OligoNumber", DataType.VARCHAR, None, "", None, None, False],
+ ["FREEZER_LOCATION", "General", "Freezer Location", DataType.VARCHAR, None, "", None, None, False],
+ ["DRAWER", "General", "Drawer", DataType.VARCHAR, None, "", None, None, False]
];
#
# Data Set Types
#
documentDefinition = [
- ["NOTES", "General information", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes regarding the dataset", None, None]
+ ["NOTES", "General information", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes regarding the dataset", None, None, False]
];
diff --git a/plasmid/source/core-plugins/petermigration/1/as/initialize-master-data.py b/plasmid/source/core-plugins/petermigration/1/as/initialize-master-data.py
index bf7d13de54f..ebe35d1e62e 100644
--- a/plasmid/source/core-plugins/petermigration/1/as/initialize-master-data.py
+++ b/plasmid/source/core-plugins/petermigration/1/as/initialize-master-data.py
@@ -80,9 +80,9 @@ def addPropertiesToSamples(sampleTypeCodes, properties):
def addProperties(entity, properties):
for property in properties:
- addProperty(entity, property[0], property[1], property[2], property[3], property[4], property[5], property[6], property[7]);
+ addProperty(entity, property[0], property[1], property[2], property[3], property[4], property[5], property[6], property[7], property[8]);
-def addProperty(entity, propertyCode, section, propertyLabel, dataType, vocabularyCode, propertyDescription, managedScript, dynamicScript):
+def addProperty(entity, propertyCode, section, propertyLabel, dataType, vocabularyCode, propertyDescription, managedScript, dynamicScript, isMandatory):
property = None;
if propertyCode in propertiesCache:
@@ -92,6 +92,7 @@ def addProperty(entity, propertyCode, section, propertyLabel, dataType, vocabula
propertyAssignment = tr.assignPropertyType(entity, property);
propertyAssignment.setSection(section);
+ propertyAssignment.setMandatory(isMandatory);
if managedScript != None:
propertyAssignment.setManaged(True);
propertyAssignment.setShownEdit(True);
--
GitLab