diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java index 61ec02480acf9c4e19c2cafaf7c699d23f824c87..e7afa3d671a78128ab596f1c3989a65116b259e9 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java @@ -160,7 +160,7 @@ class FlowLaneFeeder extends AbstractPostRegistrationDataSetHandlerForFileBasedU File dropBox = createDropBoxFile(flowLane); String fileName = flowLaneSample.getGroup().getCode() + entitySepaparator + flowcellID - + entitySepaparator + flowLane; + + SampleIdentifier.CONTAINED_SAMPLE_CODE_SEPARARTOR_STRING + flowLane; File flowLaneDataSet = new File(dropBox, fileName); if (flowLaneDataSet.exists()) { diff --git a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java index 71f79a8b3eb02d6e1c53dea1a40cad193c1c41b3..6285c73fa5a1a62317fc17d1f6ede322d5e16852 100644 --- a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java +++ b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java @@ -263,7 +263,7 @@ public class FlowLaneFeederTest extends AbstractFileSystemTestCase File[] transferedFiles = transferDropBox.listFiles(); assertEquals(1, transferedFiles.length); - String sampleName = SAMPLE_CODE + "_2"; + String sampleName = SAMPLE_CODE + ":2"; assertEquals("G2_" + sampleName, transferedFiles[0].getName()); File metaFile = getFile(transferedFiles[0], FlowLaneFeeder.META_DATA_FILE_TYPE); String myFileName = asFileName(sampleName + FlowLaneFeeder.META_DATA_FILE_TYPE); @@ -303,7 +303,7 @@ public class FlowLaneFeederTest extends AbstractFileSystemTestCase File[] transferedFiles = transferDropBox.listFiles(); assertEquals(1, transferedFiles.length); - String sampleName = SAMPLE_CODE + "_2"; + String sampleName = SAMPLE_CODE + ":2"; assertEquals("G2_" + sampleName, transferedFiles[0].getName()); File metaFile = getFile(transferedFiles[0], FlowLaneFeeder.META_DATA_FILE_TYPE); assertEquals(asFileName(sampleName + FlowLaneFeeder.META_DATA_FILE_TYPE), metaFile @@ -456,7 +456,7 @@ public class FlowLaneFeederTest extends AbstractFileSystemTestCase private void checkFlowLaneDataSet(File originalFlowLane, String flowLaneNumber) { File dropBox = new File(workingDirectory, DROP_BOX_PREFIX + flowLaneNumber); - String flowLaneSampleCode = SAMPLE_CODE + "_" + flowLaneNumber; + String flowLaneSampleCode = SAMPLE_CODE + ":" + flowLaneNumber; String fileName = "G" + flowLaneNumber + FlowLaneFeeder.DEFAULT_ENTITY_SEPARATOR + flowLaneSampleCode; File ds = new File(dropBox, fileName);